Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108140 | XP_024639120.2 | 94.530 | 457 | 21 | 1 | 1 | 457 | 1 | 453 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108140 | sp|Q9C801|MOS2_ARATH | 49.680 | 469 | 201 | 11 | 4 | 451 | 2 | 456 | 9.34e-135 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108140 | A0A396JQ22 | 94.530 | 457 | 21 | 1 | 1 | 457 | 1 | 453 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0108140 | 0.837374 | 5.398841e-57 | -8.615850e-47 |
| Msa0044000 | Msa0108140 | 0.821415 | 4.087847e-53 | -8.615850e-47 |
| Msa0071250 | Msa0108140 | 0.800822 | 1.203601e-48 | -8.615850e-47 |
| Msa0072420 | Msa0108140 | 0.801320 | 9.517329e-49 | -8.615850e-47 |
| Msa0079070 | Msa0108140 | 0.802465 | 5.537983e-49 | -8.615850e-47 |
| Msa0090550 | Msa0108140 | 0.808206 | 3.470912e-50 | -8.615850e-47 |
| Msa0104230 | Msa0108140 | 0.803474 | 3.426453e-49 | -8.615850e-47 |
| Msa0106710 | Msa0108140 | 0.816933 | 4.283806e-52 | -8.615850e-47 |
| Msa0108140 | Msa0115790 | 0.800649 | 1.305244e-48 | -8.615850e-47 |
| Msa0108140 | Msa0139550 | -0.830093 | 3.566105e-55 | -8.615850e-47 |
| Msa0108140 | Msa0150230 | 0.811605 | 6.439211e-51 | -8.615850e-47 |
| Msa0108140 | Msa0160960 | 0.818822 | 1.603782e-52 | -8.615850e-47 |
| Msa0108140 | Msa0186950 | 0.821746 | 3.426650e-53 | -8.615850e-47 |
| Msa0108140 | Msa0191070 | 0.809460 | 1.871429e-50 | -8.615850e-47 |
| Msa0108140 | Msa0204960 | 0.804334 | 2.270361e-49 | -8.615850e-47 |
| Msa0108140 | Msa0207040 | -0.808584 | 2.883193e-50 | -8.615850e-47 |
| Msa0108140 | Msa0241140 | 0.802765 | 4.803131e-49 | -8.615850e-47 |
| Msa0108140 | Msa0257490 | 0.811666 | 6.247227e-51 | -8.615850e-47 |
| Msa0108140 | Msa0272300 | 0.807494 | 4.917529e-50 | -8.615850e-47 |
| Msa0108140 | Msa0278570 | 0.808714 | 2.703836e-50 | -8.615850e-47 |
| Msa0108140 | Msa0278580 | 0.807825 | 4.184087e-50 | -8.615850e-47 |
| Msa0108140 | Msa0317940 | 0.800698 | 1.275476e-48 | -8.615850e-47 |
| Msa0108140 | Msa0321690 | 0.814819 | 1.268468e-51 | -8.615850e-47 |
| Msa0108140 | Msa0361850 | 0.811852 | 5.689963e-51 | -8.615850e-47 |
| Msa0108140 | Msa0377290 | 0.814196 | 1.742619e-51 | -8.615850e-47 |
| Msa0108140 | Msa0385500 | 0.808899 | 2.469152e-50 | -8.615850e-47 |
| Msa0108140 | Msa0389210 | 0.833331 | 5.671462e-56 | -8.615850e-47 |
| Msa0108140 | Msa0395750 | 0.815640 | 8.333243e-52 | -8.615850e-47 |
| Msa0108140 | Msa0398670 | 0.801468 | 8.878360e-49 | -8.615850e-47 |
| Msa0108140 | Msa0404630 | 0.813077 | 3.071359e-51 | -8.615850e-47 |
| Msa0108140 | Msa0440510 | 0.815399 | 9.432802e-52 | -8.615850e-47 |
| Msa0108140 | Msa0482940 | 0.801315 | 9.539959e-49 | -8.615850e-47 |
| Msa0108140 | Msa0491000 | 0.819847 | 9.366874e-53 | -8.615850e-47 |
| Msa0108140 | Msa0527540 | 0.841281 | 5.227591e-58 | -8.615850e-47 |
| Msa0108140 | Msa0542560 | 0.825144 | 5.500542e-54 | -8.615850e-47 |
| Msa0108140 | Msa0544840 | 0.827170 | 1.814206e-54 | -8.615850e-47 |
| Msa0108140 | Msa0566350 | 0.816096 | 6.593449e-52 | -8.615850e-47 |
| Msa0108140 | Msa0566750 | 0.821686 | 3.538757e-53 | -8.615850e-47 |
| Msa0108140 | Msa0600450 | 0.808557 | 2.920758e-50 | -8.615850e-47 |
| Msa0108140 | Msa0604290 | 0.819795 | 9.624908e-53 | -8.615850e-47 |
| Msa0108140 | Msa0623990 | 0.828518 | 8.596967e-55 | -8.615850e-47 |
| Msa0108140 | Msa0624060 | 0.824816 | 6.576717e-54 | -8.615850e-47 |
| Msa0108140 | Msa0676130 | 0.825671 | 4.128401e-54 | -8.615850e-47 |
| Msa0108140 | Msa0676180 | 0.819984 | 8.713658e-53 | -8.615850e-47 |
| Msa0108140 | Msa0677530 | 0.814044 | 1.882701e-51 | -8.615850e-47 |
| Msa0108140 | Msa0679360 | 0.806959 | 6.384748e-50 | -8.615850e-47 |
| Msa0108140 | Msa0741440 | 0.822823 | 1.927274e-53 | -8.615850e-47 |
| Msa0108140 | Msa0746170 | 0.802338 | 5.882434e-49 | -8.615850e-47 |
| Msa0108140 | Msa0746210 | 0.807091 | 5.986336e-50 | -8.615850e-47 |
| Msa0108140 | Msa0769970 | 0.803780 | 2.960399e-49 | -8.615850e-47 |
| Msa0108140 | Msa0822500 | 0.818610 | 1.791555e-52 | -8.615850e-47 |
| Msa0108140 | Msa0878220 | 0.802386 | 5.750403e-49 | -8.615850e-47 |
| Msa0108140 | Msa0943970 | 0.810248 | 1.267065e-50 | -8.615850e-47 |
| Msa0108140 | Msa0974950 | 0.817154 | 3.819688e-52 | -8.615850e-47 |
| Msa0108140 | Msa0985180 | 0.843143 | 1.679280e-58 | -8.615850e-47 |
| Msa0108140 | Msa1037520 | 0.805271 | 1.446659e-49 | -8.615850e-47 |
| Msa0108140 | Msa1059470 | 0.828167 | 1.044984e-54 | -8.615850e-47 |
| Msa0108140 | Msa1081790 | -0.815841 | 7.519325e-52 | -8.615850e-47 |
| Msa0108140 | Msa1100130 | -0.804914 | 1.718720e-49 | -8.615850e-47 |
| Msa0108140 | Msa1117240 | 0.809048 | 2.293343e-50 | -8.615850e-47 |
| Msa0108140 | Msa1158640 | -0.877074 | 8.407967e-69 | -8.615850e-47 |
| Msa0108140 | Msa1166090 | -0.813144 | 2.969525e-51 | -8.615850e-47 |
| Msa0108140 | Msa1231840 | 0.814824 | 1.265210e-51 | -8.615850e-47 |
| Msa0108140 | Msa1246360 | 0.806118 | 9.608629e-50 | -8.615850e-47 |
| Msa0108140 | Msa1271130 | 0.840128 | 1.047696e-57 | -8.615850e-47 |
| Msa0108140 | Msa1305810 | 0.810569 | 1.080156e-50 | -8.615850e-47 |
| Msa0108140 | Msa1316440 | 0.809405 | 1.923387e-50 | -8.615850e-47 |
| Msa0108140 | Msa1325410 | -0.801142 | 1.035410e-48 | -8.615850e-47 |
| Msa0108140 | Msa1341060 | 0.812430 | 4.256395e-51 | -8.615850e-47 |
| Msa0108140 | Msa1346840 | 0.827898 | 1.213378e-54 | -8.615850e-47 |
| Msa0108140 | Msa1378410 | 0.822942 | 1.808684e-53 | -8.615850e-47 |
| Msa0108140 | Msa1384100 | 0.801009 | 1.101920e-48 | -8.615850e-47 |
| Msa0108140 | Msa1396400 | -0.814700 | 1.348310e-51 | -8.615850e-47 |
| Msa0108140 | Msa1401990 | 0.840791 | 7.030051e-58 | -8.615850e-47 |
| Msa0108140 | Msa1407760 | 0.812744 | 3.634825e-51 | -8.615850e-47 |
| Msa0108140 | Msa1410550 | 0.801769 | 7.699595e-49 | -8.615850e-47 |
| Msa0108140 | Msa1419690 | 0.802028 | 6.812466e-49 | -8.615850e-47 |
| Msa0108140 | Msa1437730 | 0.837168 | 6.093650e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108140 | MtrunA17_Chr1g0164771 | 94.530 | 457 | 21 | 1 | 1 | 457 | 1 | 453 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108140 | AT1G33520.1 | 49.680 | 469 | 201 | 11 | 4 | 451 | 2 | 456 | 9.49e-136 | 399 |
| Msa0108140 | AT4G25020.1 | 40.659 | 455 | 188 | 13 | 4 | 457 | 2 | 375 | 5.98e-92 | 283 |
Find 169 sgRNAs with CRISPR-Local
Find 402 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATGTTGCAGAAGTTTA+AGG | 0.220108 | 1_3:-19437318 | Msa0108140:CDS |
| GGAGAAGTTGCCGGATGATA+TGG | 0.244361 | 1_3:-19437288 | Msa0108140:CDS |
| GCAGAAGTTTAAGGAGGATA+TGG | 0.280618 | 1_3:-19437309 | Msa0108140:CDS |
| TTTGAAGAAAGGAGAGGTTT+TGG | 0.289276 | 1_3:-19436649 | Msa0108140:CDS |
| AGGACTGGTAAGGAGGGTTT+AGG | 0.303667 | 1_3:-19437134 | Msa0108140:CDS |
| AGGTGAGAGGAATGGGAGGG+GGG | 0.304767 | 1_3:-19437075 | Msa0108140:CDS |
| GGGGAGTGGTGAGGAGGTTA+AGG | 0.316917 | 1_3:-19436934 | Msa0108140:CDS |
| AACACATGGCAGAGTATATA+GGG | 0.324963 | 1_3:-19436395 | Msa0108140:CDS |
| GGACTGGTAAGGAGGGTTTA+GGG | 0.326808 | 1_3:-19437133 | Msa0108140:CDS |
| CGAAGAAAGGTGAGAGGAAT+GGG | 0.331896 | 1_3:-19437082 | Msa0108140:CDS |
| TAAGGAGGGTTTAGGGTTTG+TGG | 0.346070 | 1_3:-19437126 | Msa0108140:CDS |
| TATAGGGGACCCAAGCTTAC+TGG | 0.348314 | 1_3:-19436379 | Msa0108140:CDS |
| TACTACTTGTGATATAACTA+TGG | 0.363428 | 1_3:-19436613 | Msa0108140:CDS |
| AAGGTGAGAGGAATGGGAGG+GGG | 0.363599 | 1_3:-19437076 | Msa0108140:CDS |
| GGGTTTGGTGCGGCGTTGCT+TGG | 0.370658 | 1_3:-19437233 | Msa0108140:CDS |
| GGAAAGAAGGAATGGGGATT+GGG | 0.375744 | 1_3:-19437199 | Msa0108140:CDS |
| GAACACATGGCAGAGTATAT+AGG | 0.377532 | 1_3:-19436396 | Msa0108140:CDS |
| AGTGGAGGATGTGGCGGAGT+TGG | 0.379520 | 1_3:-19436907 | Msa0108140:CDS |
| TGATCGGAAACTGTGGTATC+AGG | 0.379852 | 1_3:+19437458 | None:intergenic |
| GTTGAGAGGGATTCGGATAA+GGG | 0.381178 | 1_3:-19436471 | Msa0108140:CDS |
| CTCTCACCTTTCTTCGAACT+CGG | 0.382191 | 1_3:+19437089 | None:intergenic |
| TGTATTGTATGGTAAACATA+AGG | 0.382985 | 1_3:-19436511 | Msa0108140:CDS |
| TTGAGGAGGAGAGGTGTTTG+AGG | 0.383923 | 1_3:-19436878 | Msa0108140:CDS |
| AAAGGTGAGAGGAATGGGAG+GGG | 0.385222 | 1_3:-19437077 | Msa0108140:CDS |
| ATTAGGGTTTGGGGTTTAGA+AGG | 0.385304 | 1_3:+19437593 | None:intergenic |
| GCGGCGTTGCTTGGTGGGTA+TGG | 0.390504 | 1_3:-19437224 | Msa0108140:CDS |
| TGTTGAGAGGGATTCGGATA+AGG | 0.392094 | 1_3:-19436472 | Msa0108140:CDS |
| GGGAGACTTTATTTGAAGAA+AGG | 0.393721 | 1_3:-19436660 | Msa0108140:CDS |
| GGTAAACATAAGGGTGCCTT+TGG | 0.396312 | 1_3:-19436501 | Msa0108140:CDS |
| GGATGTGGCGGAGTTGGGTT+CGG | 0.398198 | 1_3:-19436901 | Msa0108140:CDS |
| TTTGGTGCGGCGTTGCTTGG+TGG | 0.399071 | 1_3:-19437230 | Msa0108140:CDS |
| AGAAGGAGGATAGAGTTGTT+AGG | 0.405574 | 1_3:-19437037 | Msa0108140:CDS |
| TGGAAAGAAGGAATGGGGAT+TGG | 0.405983 | 1_3:-19437200 | Msa0108140:CDS |
| TGAGGGTTTGTTCGATTTGG+AGG | 0.407404 | 1_3:+19437679 | None:intergenic |
| TTGGTGCGGCGTTGCTTGGT+GGG | 0.412601 | 1_3:-19437229 | Msa0108140:CDS |
| TATGGGGTTTGATGAGTATA+AGG | 0.420777 | 1_3:-19437270 | Msa0108140:CDS |
| GGCGGAGTTGGGTTCGGTTG+AGG | 0.421407 | 1_3:-19436895 | Msa0108140:CDS |
| GGACCTGTTCTTGTATTGTA+TGG | 0.422641 | 1_3:-19436522 | Msa0108140:CDS |
| GAAGAGGAGGACTGGTAAGG+AGG | 0.432186 | 1_3:-19437141 | Msa0108140:CDS |
| TCGAAGAAAGGTGAGAGGAA+TGG | 0.439947 | 1_3:-19437083 | Msa0108140:CDS |
| GGGTTTAGAAGGATCGAATT+CGG | 0.443472 | 1_3:+19437604 | None:intergenic |
| CTTTGGAAGTCTTGTTGAGA+GGG | 0.445545 | 1_3:-19436484 | Msa0108140:CDS |
| GATGTACCGGTGGATGGGTT+TGG | 0.447293 | 1_3:-19437248 | Msa0108140:CDS |
| GTGGAGGATGTGGCGGAGTT+GGG | 0.449240 | 1_3:-19436906 | Msa0108140:CDS |
| GGAGAGTGAGAGGAAGAAGA+AGG | 0.450838 | 1_3:-19437054 | Msa0108140:CDS |
| GAGAAGTTGCCGGATGATAT+GGG | 0.453199 | 1_3:-19437287 | Msa0108140:CDS |
| TTGTTAGGATTGTGAGAGGG+AGG | 0.454109 | 1_3:-19437022 | Msa0108140:CDS |
| GTTTGAAAGCTAGTGTTGTC+GGG | 0.457112 | 1_3:-19436992 | Msa0108140:CDS |
| TGCACCGAGGGTGAAGGCTT+CGG | 0.459054 | 1_3:-19437348 | Msa0108140:CDS |
| GAGGGTGAAGGCTTCGGTTG+AGG | 0.459840 | 1_3:-19437342 | Msa0108140:CDS |
| GCTAGTGTTGTCGGGAGAGA+TGG | 0.459950 | 1_3:-19436984 | Msa0108140:CDS |
| TGTGGAAGAATCTTCGTTGA+AGG | 0.466165 | 1_3:+19437652 | None:intergenic |
| ATTGTGAGAGGGAGGGATGT+TGG | 0.467297 | 1_3:-19437014 | Msa0108140:CDS |
| AGGATTTGAAGATTCGAGGT+AGG | 0.468089 | 1_3:-19436848 | Msa0108140:CDS |
| GAAGATTCGAGGTAGGGATG+AGG | 0.469620 | 1_3:-19436841 | Msa0108140:CDS |
| TTGAAGGATTTGAAGATTCG+AGG | 0.470115 | 1_3:-19436852 | Msa0108140:CDS |
| TTACCATACAATACAAGAAC+AGG | 0.470597 | 1_3:+19436519 | None:intergenic |
| AATCAATGTCCCAGTAAGCT+TGG | 0.470609 | 1_3:+19436369 | None:intergenic |
| GGATTTGAAGATTCGAGGTA+GGG | 0.472523 | 1_3:-19436847 | Msa0108140:CDS |
| CGTTGCTTGGTGGGTATGGA+TGG | 0.473228 | 1_3:-19437220 | Msa0108140:CDS |
| GGAGGATATGGAGAAGTTGC+CGG | 0.473497 | 1_3:-19437297 | Msa0108140:CDS |
| AAGTCTTGTTGAGAGGGATT+CGG | 0.475431 | 1_3:-19436478 | Msa0108140:CDS |
| AAGAGGAGGACTGGTAAGGA+GGG | 0.476122 | 1_3:-19437140 | Msa0108140:CDS |
| CTAGTGTTGTCGGGAGAGAT+GGG | 0.477302 | 1_3:-19436983 | Msa0108140:CDS |
| GAGAGTAGGGAGATTATTCA+AGG | 0.477857 | 1_3:-19436588 | Msa0108140:CDS |
| TGATTAGTCGAAGTTTGAAA+GGG | 0.478124 | 1_3:-19436683 | Msa0108140:CDS |
| AGAGTTGTTAGGATTGTGAG+AGG | 0.481489 | 1_3:-19437026 | Msa0108140:CDS |
| CGAGGTAGGGATGAGGAGAA+AGG | 0.482117 | 1_3:-19436834 | Msa0108140:CDS |
| GGTGAAGAGGAGGACTGGTA+AGG | 0.484503 | 1_3:-19437144 | Msa0108140:CDS |
| TGACTCGTAAGCCACGAAAC+CGG | 0.487321 | 1_3:+19436720 | None:intergenic |
| TATAACTATGGATGAGAGTA+GGG | 0.493930 | 1_3:-19436601 | Msa0108140:CDS |
| ATCAATGTCCCAGTAAGCTT+GGG | 0.494827 | 1_3:+19436370 | None:intergenic |
| TGAGGAGGTTAAGGTTAAAG+TGG | 0.494894 | 1_3:-19436925 | Msa0108140:CDS |
| CCTTTGGAAGTCTTGTTGAG+AGG | 0.495502 | 1_3:-19436485 | Msa0108140:CDS |
| CACCCTCGGTGCATCAGCAT+TGG | 0.496909 | 1_3:+19437358 | None:intergenic |
| GGTGGGTATGGATGGAAAGA+AGG | 0.497455 | 1_3:-19437212 | Msa0108140:CDS |
| GTGATTAGTCGAAGTTTGAA+AGG | 0.501447 | 1_3:-19436684 | Msa0108140:CDS |
| GTTAGTGGTAAGGAAGAGAA+GGG | 0.504160 | 1_3:-19436750 | Msa0108140:CDS |
| GGTTTGAAAGCTAGTGTTGT+CGG | 0.505113 | 1_3:-19436993 | Msa0108140:CDS |
| GAGGTGTTTGAGGAAGTTGA+AGG | 0.505438 | 1_3:-19436868 | Msa0108140:CDS |
| ATTCAACATTGAGCCTCTCA+TGG | 0.507391 | 1_3:+19436421 | None:intergenic |
| ATAGGGGACCCAAGCTTACT+GGG | 0.508117 | 1_3:-19436378 | Msa0108140:CDS |
| TATAAGGATGTACCGGTGGA+TGG | 0.509199 | 1_3:-19437254 | Msa0108140:CDS |
| CCACCTCCGAGTTCGAAGAA+AGG | 0.511750 | 1_3:-19437095 | Msa0108140:CDS |
| GTTGACGAGAAGAGAGTGAA+TGG | 0.512213 | 1_3:-19436783 | Msa0108140:CDS |
| AGGGGAGGAAACCGGTTTCG+TGG | 0.513531 | 1_3:-19436731 | Msa0108140:CDS |
| TATGGATGGAAAGAAGGAAT+GGG | 0.514400 | 1_3:-19437206 | Msa0108140:CDS |
| GGAAGAGAAGGGGAGGAAAC+CGG | 0.514795 | 1_3:-19436739 | Msa0108140:CDS |
| AGAAAGGTGAGAGGAATGGG+AGG | 0.515891 | 1_3:-19437079 | Msa0108140:CDS |
| AGACCGTACGATGAATTCTC+AGG | 0.516592 | 1_3:+19437434 | None:intergenic |
| AATGGTAATGGCGGTGTTAG+TGG | 0.519378 | 1_3:-19436765 | Msa0108140:CDS |
| CAATGTTGAATTTGAACACA+TGG | 0.521834 | 1_3:-19436409 | Msa0108140:CDS |
| ATAGTTATATCACAAGTAGT+AGG | 0.522893 | 1_3:+19436615 | None:intergenic |
| GTATTGTATGGTAAACATAA+GGG | 0.526660 | 1_3:-19436510 | Msa0108140:CDS |
| ATATAACTATGGATGAGAGT+AGG | 0.527587 | 1_3:-19436602 | Msa0108140:CDS |
| GGAGTTGGGTTCGGTTGAGG+AGG | 0.528629 | 1_3:-19436892 | Msa0108140:CDS |
| GAGAAGAGAGTGAATGGTAA+TGG | 0.531889 | 1_3:-19436777 | Msa0108140:CDS |
| CCTTTCTTCGAACTCGGAGG+TGG | 0.531991 | 1_3:+19437095 | None:intergenic |
| TGTTAGTGGTAAGGAAGAGA+AGG | 0.534710 | 1_3:-19436751 | Msa0108140:CDS |
| TCGGAGTGTGAATCGGTGAT+TGG | 0.535978 | 1_3:+19437500 | None:intergenic |
| TGCTGATGCACCGAGGGTGA+AGG | 0.539763 | 1_3:-19437354 | Msa0108140:CDS |
| GTTGAGGTGAAGAGGAGGAC+TGG | 0.539917 | 1_3:-19437149 | Msa0108140:CDS |
| CAGGTACAAACGTGAGGGAA+TGG | 0.541500 | 1_3:+19437477 | None:intergenic |
| TGGGTTCGGTTGAGGAGGAG+AGG | 0.542166 | 1_3:-19436887 | Msa0108140:CDS |
| TTACGAGTCATATTCGCGTA+AGG | 0.542417 | 1_3:-19436707 | Msa0108140:CDS |
| TCATCAAACCCCATATCATC+CGG | 0.545408 | 1_3:+19437278 | None:intergenic |
| GAGTAAGCGAGGGAGGGATG+AGG | 0.545947 | 1_3:-19436805 | Msa0108140:CDS |
| GAAAGGTGAGAGGAATGGGA+GGG | 0.549583 | 1_3:-19437078 | Msa0108140:CDS |
| TAAGGTTAAAGTGGAGGATG+TGG | 0.551694 | 1_3:-19436916 | Msa0108140:CDS |
| TGTTAGGATTGTGAGAGGGA+GGG | 0.553230 | 1_3:-19437021 | Msa0108140:CDS |
| AGAGTAGGGAGATTATTCAA+GGG | 0.553369 | 1_3:-19436587 | Msa0108140:CDS |
| TAATGGCGGTGTTAGTGGTA+AGG | 0.555421 | 1_3:-19436760 | Msa0108140:CDS |
| GGTCGAAGAGTAAGCGAGGG+AGG | 0.555617 | 1_3:-19436812 | Msa0108140:CDS |
| CGATGAATTCTCAGGTTGAT+CGG | 0.557166 | 1_3:+19437442 | None:intergenic |
| GAGTAGGGAGATTATTCAAG+GGG | 0.560395 | 1_3:-19436586 | Msa0108140:CDS |
| TCAACCGAAGCCTTCACCCT+CGG | 0.560564 | 1_3:+19437344 | None:intergenic |
| AGGGATTCGGATAAGGGGAT+TGG | 0.563325 | 1_3:-19436465 | Msa0108140:CDS |
| GTGGTAAGGAAGAGAAGGGG+AGG | 0.563710 | 1_3:-19436746 | Msa0108140:CDS |
| GAGGTAGGGATGAGGAGAAA+GGG | 0.568645 | 1_3:-19436833 | Msa0108140:CDS |
| GGAGGTTAAGGTTAAAGTGG+AGG | 0.568832 | 1_3:-19436922 | Msa0108140:CDS |
| GAGTTGTTAGGATTGTGAGA+GGG | 0.569203 | 1_3:-19437025 | Msa0108140:CDS |
| TGAAGATTGTTGAGGTGAAG+AGG | 0.572831 | 1_3:-19437157 | Msa0108140:CDS |
| GAGTGAGAGGAAGAAGAAGG+AGG | 0.574117 | 1_3:-19437051 | Msa0108140:CDS |
| GATTGGGAAGAATGCTAAGG+AGG | 0.576476 | 1_3:-19437183 | Msa0108140:CDS |
| ACTTTATTTGAAGAAAGGAG+AGG | 0.578619 | 1_3:-19436655 | Msa0108140:CDS |
| TTAGTCGAAGTTTGAAAGGG+GGG | 0.581072 | 1_3:-19436680 | Msa0108140:CDS |
| ATAAGGATGTACCGGTGGAT+GGG | 0.582128 | 1_3:-19437253 | Msa0108140:CDS |
| AGATTGTTGAGGTGAAGAGG+AGG | 0.586489 | 1_3:-19437154 | Msa0108140:CDS |
| GTCGAAGAGTAAGCGAGGGA+GGG | 0.588487 | 1_3:-19436811 | Msa0108140:CDS |
| TGATGAGTATAAGGATGTAC+CGG | 0.592878 | 1_3:-19437261 | Msa0108140:CDS |
| GTATGGATGGAAAGAAGGAA+TGG | 0.593271 | 1_3:-19437207 | Msa0108140:CDS |
| GGTTAAAGTGGAGGATGTGG+CGG | 0.594941 | 1_3:-19436913 | Msa0108140:CDS |
| TACAAACGTGAGGGAATGGT+CGG | 0.598412 | 1_3:+19437481 | None:intergenic |
| AAAGGGTCGAAGAGTAAGCG+AGG | 0.600647 | 1_3:-19436816 | Msa0108140:CDS |
| TGCCAATGCTGATGCACCGA+GGG | 0.600975 | 1_3:-19437360 | Msa0108140:CDS |
| CCTCTCAACAAGACTTCCAA+AGG | 0.604622 | 1_3:+19436485 | None:intergenic |
| TTCAACATTGAGCCTCTCAT+GGG | 0.605589 | 1_3:+19436422 | None:intergenic |
| TTGAGAGGGATTCGGATAAG+GGG | 0.605890 | 1_3:-19436470 | Msa0108140:CDS |
| TTCTCAAGATATGCTCGAGA+CGG | 0.606221 | 1_3:-19436562 | Msa0108140:CDS |
| GGGGATTGGGAAGAATGCTA+AGG | 0.612402 | 1_3:-19437186 | Msa0108140:CDS |
| GCCGCACCAAACCCATCCAC+CGG | 0.613124 | 1_3:+19437242 | None:intergenic |
| ATTAGTCGAAGTTTGAAAGG+GGG | 0.617550 | 1_3:-19436681 | Msa0108140:CDS |
| GGAATGGTCGGAGTGTGAAT+CGG | 0.619805 | 1_3:+19437493 | None:intergenic |
| AAGGGTCGAAGAGTAAGCGA+GGG | 0.620359 | 1_3:-19436815 | Msa0108140:CDS |
| GACGGCTATTCCACGACGAG+GGG | 0.622170 | 1_3:-19436544 | Msa0108140:CDS |
| TATGTTGCAGAAGTTTAAGG+AGG | 0.626509 | 1_3:-19437315 | Msa0108140:CDS |
| TACGAGTCATATTCGCGTAA+GGG | 0.630899 | 1_3:-19436706 | Msa0108140:CDS |
| AGAAGTTGCCGGATGATATG+GGG | 0.631593 | 1_3:-19437286 | Msa0108140:CDS |
| ATGGATGGAAAGAAGGAATG+GGG | 0.634150 | 1_3:-19437205 | Msa0108140:CDS |
| TGGTATCAGGTACAAACGTG+AGG | 0.636918 | 1_3:+19437471 | None:intergenic |
| TTAGTGGTAAGGAAGAGAAG+GGG | 0.638126 | 1_3:-19436749 | Msa0108140:CDS |
| TCACCTTTCTTCGAACTCGG+AGG | 0.639296 | 1_3:+19437092 | None:intergenic |
| ACCGGTGGATGGGTTTGGTG+CGG | 0.643880 | 1_3:-19437243 | Msa0108140:CDS |
| CAACCTGAGAATTCATCGTA+CGG | 0.645522 | 1_3:-19437437 | Msa0108140:CDS |
| CTCAGGTTGATCGGAAACTG+TGG | 0.647576 | 1_3:+19437451 | None:intergenic |
| GATTAGTCGAAGTTTGAAAG+GGG | 0.650888 | 1_3:-19436682 | Msa0108140:CDS |
| CGAGTTCGAAGAAAGGTGAG+AGG | 0.651475 | 1_3:-19437088 | Msa0108140:CDS |
| AGACGGCTATTCCACGACGA+GGG | 0.652876 | 1_3:-19436545 | Msa0108140:CDS |
| TGTTGTCGGGAGAGATGGGG+AGG | 0.653677 | 1_3:-19436979 | Msa0108140:CDS |
| GGAGGATGTGAAGATTGTTG+AGG | 0.659360 | 1_3:-19437165 | Msa0108140:CDS |
| TAGTGTTGTCGGGAGAGATG+GGG | 0.679104 | 1_3:-19436982 | Msa0108140:CDS |
| AAGAGAGTGAATGGTAATGG+CGG | 0.680709 | 1_3:-19436774 | Msa0108140:CDS |
| GGTATCAGGTACAAACGTGA+GGG | 0.681222 | 1_3:+19437472 | None:intergenic |
| ACGGCTATTCCACGACGAGG+GGG | 0.684499 | 1_3:-19436543 | Msa0108140:CDS |
| AAGATGCTGATACCCATGAG+AGG | 0.701158 | 1_3:-19436434 | Msa0108140:CDS |
| TGAGTATAAGGATGTACCGG+TGG | 0.707266 | 1_3:-19437258 | Msa0108140:CDS |
| CTGCCAATGCTGATGCACCG+AGG | 0.726582 | 1_3:-19437361 | Msa0108140:CDS |
| ACACATGGCAGAGTATATAG+GGG | 0.730327 | 1_3:-19436394 | Msa0108140:CDS |
| GAGACGGCTATTCCACGACG+AGG | 0.751516 | 1_3:-19436546 | Msa0108140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATAATGATAAGAAAAACA+AGG | - | chr1_3:19436691-19436710 | Msa0108140:CDS | 20.0% |
| !!! | TGATAATGATAAGAAAAACA+AGG | - | chr1_3:19436691-19436710 | Msa0108140:CDS | 20.0% |
| ! | ATAGTTATATCACAAGTAGT+AGG | + | chr1_3:19437481-19437500 | None:intergenic | 25.0% |
| ! | TACTACTTGTGATATAACTA+TGG | - | chr1_3:19437480-19437499 | Msa0108140:CDS | 25.0% |
| ! | TGTATTGTATGGTAAACATA+AGG | - | chr1_3:19437582-19437601 | Msa0108140:CDS | 25.0% |
| ! | GTATTGTATGGTAAACATAA+GGG | - | chr1_3:19437583-19437602 | Msa0108140:CDS | 25.0% |
| ! | ATAGTTATATCACAAGTAGT+AGG | + | chr1_3:19437481-19437500 | None:intergenic | 25.0% |
| ! | TACTACTTGTGATATAACTA+TGG | - | chr1_3:19437480-19437499 | Msa0108140:CDS | 25.0% |
| ! | TGTATTGTATGGTAAACATA+AGG | - | chr1_3:19437582-19437601 | Msa0108140:CDS | 25.0% |
| ! | GTATTGTATGGTAAACATAA+GGG | - | chr1_3:19437583-19437602 | Msa0108140:CDS | 25.0% |
| !!! | TTGCTTTTGTTGTTGATTTG+TGG | + | chr1_3:19436462-19436481 | None:intergenic | 30.0% |
| !!! | AATTAGGGTTTTGGGAATTA+GGG | + | chr1_3:19436519-19436538 | None:intergenic | 30.0% |
| ! | AGATTCTTCATTTTCTTGTG+AGG | + | chr1_3:19436566-19436585 | None:intergenic | 30.0% |
| TTCTATGTTGCAGAAGTTTA+AGG | - | chr1_3:19436775-19436794 | Msa0108140:CDS | 30.0% | |
| ! | TGATTAGTCGAAGTTTGAAA+GGG | - | chr1_3:19437410-19437429 | Msa0108140:CDS | 30.0% |
| ! | ACTTTATTTGAAGAAAGGAG+AGG | - | chr1_3:19437438-19437457 | Msa0108140:CDS | 30.0% |
| ATATAACTATGGATGAGAGT+AGG | - | chr1_3:19437491-19437510 | Msa0108140:CDS | 30.0% | |
| TATAACTATGGATGAGAGTA+GGG | - | chr1_3:19437492-19437511 | Msa0108140:CDS | 30.0% | |
| TTACCATACAATACAAGAAC+AGG | + | chr1_3:19437577-19437596 | None:intergenic | 30.0% | |
| CAATGTTGAATTTGAACACA+TGG | - | chr1_3:19437684-19437703 | Msa0108140:CDS | 30.0% | |
| !!! | TTGCTTTTGTTGTTGATTTG+TGG | + | chr1_3:19436462-19436481 | None:intergenic | 30.0% |
| !!! | AATTAGGGTTTTGGGAATTA+GGG | + | chr1_3:19436519-19436538 | None:intergenic | 30.0% |
| ! | AGATTCTTCATTTTCTTGTG+AGG | + | chr1_3:19436566-19436585 | None:intergenic | 30.0% |
| TTCTATGTTGCAGAAGTTTA+AGG | - | chr1_3:19436775-19436794 | Msa0108140:CDS | 30.0% | |
| ! | TGATTAGTCGAAGTTTGAAA+GGG | - | chr1_3:19437410-19437429 | Msa0108140:CDS | 30.0% |
| ! | ACTTTATTTGAAGAAAGGAG+AGG | - | chr1_3:19437438-19437457 | Msa0108140:CDS | 30.0% |
| ATATAACTATGGATGAGAGT+AGG | - | chr1_3:19437491-19437510 | Msa0108140:CDS | 30.0% | |
| TATAACTATGGATGAGAGTA+GGG | - | chr1_3:19437492-19437511 | Msa0108140:CDS | 30.0% | |
| TTACCATACAATACAAGAAC+AGG | + | chr1_3:19437577-19437596 | None:intergenic | 30.0% | |
| CAATGTTGAATTTGAACACA+TGG | - | chr1_3:19437684-19437703 | Msa0108140:CDS | 30.0% | |
| !! | TGGAGGATGATTTTGAAGAT+GGG | + | chr1_3:19436400-19436419 | None:intergenic | 35.0% |
| !! | TTGGAGGATGATTTTGAAGA+TGG | + | chr1_3:19436401-19436420 | None:intergenic | 35.0% |
| !! | TTTTGAGGGTTTGTTCGATT+TGG | + | chr1_3:19436420-19436439 | None:intergenic | 35.0% |
| ! | TCTTCGTTGAAGGTTTTTGA+GGG | + | chr1_3:19436434-19436453 | None:intergenic | 35.0% |
| ! | ATCTTCGTTGAAGGTTTTTG+AGG | + | chr1_3:19436435-19436454 | None:intergenic | 35.0% |
| !!! | GAATTAGGGTTTTGGGAATT+AGG | + | chr1_3:19436520-19436539 | None:intergenic | 35.0% |
| ! | ATTTTCGATTGGGGGAATTA+GGG | + | chr1_3:19436534-19436553 | None:intergenic | 35.0% |
| TATGTTGCAGAAGTTTAAGG+AGG | - | chr1_3:19436778-19436797 | Msa0108140:CDS | 35.0% | |
| TATGGGGTTTGATGAGTATA+AGG | - | chr1_3:19436823-19436842 | Msa0108140:CDS | 35.0% | |
| TGATGAGTATAAGGATGTAC+CGG | - | chr1_3:19436832-19436851 | Msa0108140:CDS | 35.0% | |
| TATGGATGGAAAGAAGGAAT+GGG | - | chr1_3:19436887-19436906 | Msa0108140:CDS | 35.0% | |
| !!! | TGTTGTTGTTTTGAGGGTTT+TGG | - | chr1_3:19437138-19437157 | Msa0108140:CDS | 35.0% |
| !!! | GTTGTTGTTTTGAGGGTTTT+GGG | - | chr1_3:19437139-19437158 | Msa0108140:CDS | 35.0% |
| !!! | TTGTTGTTTTGAGGGTTTTG+GGG | - | chr1_3:19437140-19437159 | Msa0108140:CDS | 35.0% |
| TTGAAGGATTTGAAGATTCG+AGG | - | chr1_3:19437241-19437260 | Msa0108140:CDS | 35.0% | |
| ! | GTGATTAGTCGAAGTTTGAA+AGG | - | chr1_3:19437409-19437428 | Msa0108140:CDS | 35.0% |
| ! | GATTAGTCGAAGTTTGAAAG+GGG | - | chr1_3:19437411-19437430 | Msa0108140:CDS | 35.0% |
| ATTAGTCGAAGTTTGAAAGG+GGG | - | chr1_3:19437412-19437431 | Msa0108140:CDS | 35.0% | |
| ! | GGGAGACTTTATTTGAAGAA+AGG | - | chr1_3:19437433-19437452 | Msa0108140:CDS | 35.0% |
| ! | TTTGAAGAAAGGAGAGGTTT+TGG | - | chr1_3:19437444-19437463 | Msa0108140:CDS | 35.0% |
| !!! | GAGAGGTTTTGGATGTTATT+GGG | - | chr1_3:19437455-19437474 | Msa0108140:CDS | 35.0% |
| AGAGTAGGGAGATTATTCAA+GGG | - | chr1_3:19437506-19437525 | Msa0108140:CDS | 35.0% | |
| AACACATGGCAGAGTATATA+GGG | - | chr1_3:19437698-19437717 | Msa0108140:CDS | 35.0% | |
| !! | TGGAGGATGATTTTGAAGAT+GGG | + | chr1_3:19436400-19436419 | None:intergenic | 35.0% |
| !! | TTGGAGGATGATTTTGAAGA+TGG | + | chr1_3:19436401-19436420 | None:intergenic | 35.0% |
| !! | TTTTGAGGGTTTGTTCGATT+TGG | + | chr1_3:19436420-19436439 | None:intergenic | 35.0% |
| ! | TCTTCGTTGAAGGTTTTTGA+GGG | + | chr1_3:19436434-19436453 | None:intergenic | 35.0% |
| ! | ATCTTCGTTGAAGGTTTTTG+AGG | + | chr1_3:19436435-19436454 | None:intergenic | 35.0% |
| !!! | GAATTAGGGTTTTGGGAATT+AGG | + | chr1_3:19436520-19436539 | None:intergenic | 35.0% |
| ! | ATTTTCGATTGGGGGAATTA+GGG | + | chr1_3:19436534-19436553 | None:intergenic | 35.0% |
| TATGTTGCAGAAGTTTAAGG+AGG | - | chr1_3:19436778-19436797 | Msa0108140:CDS | 35.0% | |
| TATGGGGTTTGATGAGTATA+AGG | - | chr1_3:19436823-19436842 | Msa0108140:CDS | 35.0% | |
| TGATGAGTATAAGGATGTAC+CGG | - | chr1_3:19436832-19436851 | Msa0108140:CDS | 35.0% | |
| TATGGATGGAAAGAAGGAAT+GGG | - | chr1_3:19436887-19436906 | Msa0108140:CDS | 35.0% | |
| !!! | TGTTGTTGTTTTGAGGGTTT+TGG | - | chr1_3:19437138-19437157 | Msa0108140:CDS | 35.0% |
| !!! | GTTGTTGTTTTGAGGGTTTT+GGG | - | chr1_3:19437139-19437158 | Msa0108140:CDS | 35.0% |
| !!! | TTGTTGTTTTGAGGGTTTTG+GGG | - | chr1_3:19437140-19437159 | Msa0108140:CDS | 35.0% |
| TTGAAGGATTTGAAGATTCG+AGG | - | chr1_3:19437241-19437260 | Msa0108140:CDS | 35.0% | |
| ! | GTGATTAGTCGAAGTTTGAA+AGG | - | chr1_3:19437409-19437428 | Msa0108140:CDS | 35.0% |
| ! | GATTAGTCGAAGTTTGAAAG+GGG | - | chr1_3:19437411-19437430 | Msa0108140:CDS | 35.0% |
| ATTAGTCGAAGTTTGAAAGG+GGG | - | chr1_3:19437412-19437431 | Msa0108140:CDS | 35.0% | |
| ! | GGGAGACTTTATTTGAAGAA+AGG | - | chr1_3:19437433-19437452 | Msa0108140:CDS | 35.0% |
| ! | TTTGAAGAAAGGAGAGGTTT+TGG | - | chr1_3:19437444-19437463 | Msa0108140:CDS | 35.0% |
| !!! | GAGAGGTTTTGGATGTTATT+GGG | - | chr1_3:19437455-19437474 | Msa0108140:CDS | 35.0% |
| AGAGTAGGGAGATTATTCAA+GGG | - | chr1_3:19437506-19437525 | Msa0108140:CDS | 35.0% | |
| AACACATGGCAGAGTATATA+GGG | - | chr1_3:19437698-19437717 | Msa0108140:CDS | 35.0% | |
| TGTGGAAGAATCTTCGTTGA+AGG | + | chr1_3:19436444-19436463 | None:intergenic | 40.0% | |
| GGGTTTAGAAGGATCGAATT+CGG | + | chr1_3:19436492-19436511 | None:intergenic | 40.0% | |
| ! | ATTAGGGTTTGGGGTTTAGA+AGG | + | chr1_3:19436503-19436522 | None:intergenic | 40.0% |
| !!! | GTTTTGGGAATTAGGGTTTG+GGG | + | chr1_3:19436512-19436531 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGAATTAGGGTTT+GGG | + | chr1_3:19436513-19436532 | None:intergenic | 40.0% |
| ! | ATTGGGGGAATTAGGGTTTT+GGG | + | chr1_3:19436527-19436546 | None:intergenic | 40.0% |
| ! | GATTTTCGATTGGGGGAATT+AGG | + | chr1_3:19436535-19436554 | None:intergenic | 40.0% |
| TTCCCCCAATCGAAAATCAA+TGG | - | chr1_3:19436537-19436556 | Msa0108140:CDS | 40.0% | |
| !!! | ACGCCATTGATTTTCGATTG+GGG | + | chr1_3:19436543-19436562 | None:intergenic | 40.0% |
| !!! | GACGCCATTGATTTTCGATT+GGG | + | chr1_3:19436544-19436563 | None:intergenic | 40.0% |
| !! | CGATGAATTCTCAGGTTGAT+CGG | + | chr1_3:19436654-19436673 | None:intergenic | 40.0% |
| CAACCTGAGAATTCATCGTA+CGG | - | chr1_3:19436656-19436675 | Msa0108140:CDS | 40.0% | |
| GCAGAAGTTTAAGGAGGATA+TGG | - | chr1_3:19436784-19436803 | Msa0108140:CDS | 40.0% | |
| TCATCAAACCCCATATCATC+CGG | + | chr1_3:19436818-19436837 | None:intergenic | 40.0% | |
| GTATGGATGGAAAGAAGGAA+TGG | - | chr1_3:19436886-19436905 | Msa0108140:CDS | 40.0% | |
| ATGGATGGAAAGAAGGAATG+GGG | - | chr1_3:19436888-19436907 | Msa0108140:CDS | 40.0% | |
| TGAAGATTGTTGAGGTGAAG+AGG | - | chr1_3:19436936-19436955 | Msa0108140:CDS | 40.0% | |
| AGAAGGAGGATAGAGTTGTT+AGG | - | chr1_3:19437056-19437075 | Msa0108140:CDS | 40.0% | |
| AGAGTTGTTAGGATTGTGAG+AGG | - | chr1_3:19437067-19437086 | Msa0108140:CDS | 40.0% | |
| GAGTTGTTAGGATTGTGAGA+GGG | - | chr1_3:19437068-19437087 | Msa0108140:CDS | 40.0% | |
| GGTTTGAAAGCTAGTGTTGT+CGG | - | chr1_3:19437100-19437119 | Msa0108140:CDS | 40.0% | |
| GTTTGAAAGCTAGTGTTGTC+GGG | - | chr1_3:19437101-19437120 | Msa0108140:CDS | 40.0% | |
| !!! | GGAGGATGTTGTTGTTTTGA+GGG | - | chr1_3:19437132-19437151 | Msa0108140:CDS | 40.0% |
| TGAGGAGGTTAAGGTTAAAG+TGG | - | chr1_3:19437168-19437187 | Msa0108140:CDS | 40.0% | |
| TAAGGTTAAAGTGGAGGATG+TGG | - | chr1_3:19437177-19437196 | Msa0108140:CDS | 40.0% | |
| AGGATTTGAAGATTCGAGGT+AGG | - | chr1_3:19437245-19437264 | Msa0108140:CDS | 40.0% | |
| GGATTTGAAGATTCGAGGTA+GGG | - | chr1_3:19437246-19437265 | Msa0108140:CDS | 40.0% | |
| GAGAAGAGAGTGAATGGTAA+TGG | - | chr1_3:19437316-19437335 | Msa0108140:CDS | 40.0% | |
| !! | AAGAGAGTGAATGGTAATGG+CGG | - | chr1_3:19437319-19437338 | Msa0108140:CDS | 40.0% |
| TGTTAGTGGTAAGGAAGAGA+AGG | - | chr1_3:19437342-19437361 | Msa0108140:CDS | 40.0% | |
| GTTAGTGGTAAGGAAGAGAA+GGG | - | chr1_3:19437343-19437362 | Msa0108140:CDS | 40.0% | |
| TTAGTGGTAAGGAAGAGAAG+GGG | - | chr1_3:19437344-19437363 | Msa0108140:CDS | 40.0% | |
| TTACGAGTCATATTCGCGTA+AGG | - | chr1_3:19437386-19437405 | Msa0108140:CDS | 40.0% | |
| TACGAGTCATATTCGCGTAA+GGG | - | chr1_3:19437387-19437406 | Msa0108140:CDS | 40.0% | |
| TTAGTCGAAGTTTGAAAGGG+GGG | - | chr1_3:19437413-19437432 | Msa0108140:CDS | 40.0% | |
| !!! | GGAGAGGTTTTGGATGTTAT+TGG | - | chr1_3:19437454-19437473 | Msa0108140:CDS | 40.0% |
| GAGAGTAGGGAGATTATTCA+AGG | - | chr1_3:19437505-19437524 | Msa0108140:CDS | 40.0% | |
| GAGTAGGGAGATTATTCAAG+GGG | - | chr1_3:19437507-19437526 | Msa0108140:CDS | 40.0% | |
| TTCTCAAGATATGCTCGAGA+CGG | - | chr1_3:19437531-19437550 | Msa0108140:CDS | 40.0% | |
| GGACCTGTTCTTGTATTGTA+TGG | - | chr1_3:19437571-19437590 | Msa0108140:CDS | 40.0% | |
| !! | CTTTGGAAGTCTTGTTGAGA+GGG | - | chr1_3:19437609-19437628 | Msa0108140:CDS | 40.0% |
| !! | AAGTCTTGTTGAGAGGGATT+CGG | - | chr1_3:19437615-19437634 | Msa0108140:CDS | 40.0% |
| TTCAACATTGAGCCTCTCAT+GGG | + | chr1_3:19437674-19437693 | None:intergenic | 40.0% | |
| ATTCAACATTGAGCCTCTCA+TGG | + | chr1_3:19437675-19437694 | None:intergenic | 40.0% | |
| GAACACATGGCAGAGTATAT+AGG | - | chr1_3:19437697-19437716 | Msa0108140:CDS | 40.0% | |
| ACACATGGCAGAGTATATAG+GGG | - | chr1_3:19437699-19437718 | Msa0108140:CDS | 40.0% | |
| TGTGGAAGAATCTTCGTTGA+AGG | + | chr1_3:19436444-19436463 | None:intergenic | 40.0% | |
| GGGTTTAGAAGGATCGAATT+CGG | + | chr1_3:19436492-19436511 | None:intergenic | 40.0% | |
| ! | ATTAGGGTTTGGGGTTTAGA+AGG | + | chr1_3:19436503-19436522 | None:intergenic | 40.0% |
| !!! | GTTTTGGGAATTAGGGTTTG+GGG | + | chr1_3:19436512-19436531 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGAATTAGGGTTT+GGG | + | chr1_3:19436513-19436532 | None:intergenic | 40.0% |
| ! | ATTGGGGGAATTAGGGTTTT+GGG | + | chr1_3:19436527-19436546 | None:intergenic | 40.0% |
| ! | GATTTTCGATTGGGGGAATT+AGG | + | chr1_3:19436535-19436554 | None:intergenic | 40.0% |
| TTCCCCCAATCGAAAATCAA+TGG | - | chr1_3:19436537-19436556 | Msa0108140:CDS | 40.0% | |
| !!! | ACGCCATTGATTTTCGATTG+GGG | + | chr1_3:19436543-19436562 | None:intergenic | 40.0% |
| !!! | GACGCCATTGATTTTCGATT+GGG | + | chr1_3:19436544-19436563 | None:intergenic | 40.0% |
| !! | CGATGAATTCTCAGGTTGAT+CGG | + | chr1_3:19436654-19436673 | None:intergenic | 40.0% |
| CAACCTGAGAATTCATCGTA+CGG | - | chr1_3:19436656-19436675 | Msa0108140:CDS | 40.0% | |
| GCAGAAGTTTAAGGAGGATA+TGG | - | chr1_3:19436784-19436803 | Msa0108140:CDS | 40.0% | |
| TCATCAAACCCCATATCATC+CGG | + | chr1_3:19436818-19436837 | None:intergenic | 40.0% | |
| GTATGGATGGAAAGAAGGAA+TGG | - | chr1_3:19436886-19436905 | Msa0108140:CDS | 40.0% | |
| ATGGATGGAAAGAAGGAATG+GGG | - | chr1_3:19436888-19436907 | Msa0108140:CDS | 40.0% | |
| TGAAGATTGTTGAGGTGAAG+AGG | - | chr1_3:19436936-19436955 | Msa0108140:CDS | 40.0% | |
| AGAAGGAGGATAGAGTTGTT+AGG | - | chr1_3:19437056-19437075 | Msa0108140:CDS | 40.0% | |
| AGAGTTGTTAGGATTGTGAG+AGG | - | chr1_3:19437067-19437086 | Msa0108140:CDS | 40.0% | |
| GAGTTGTTAGGATTGTGAGA+GGG | - | chr1_3:19437068-19437087 | Msa0108140:CDS | 40.0% | |
| GGTTTGAAAGCTAGTGTTGT+CGG | - | chr1_3:19437100-19437119 | Msa0108140:CDS | 40.0% | |
| GTTTGAAAGCTAGTGTTGTC+GGG | - | chr1_3:19437101-19437120 | Msa0108140:CDS | 40.0% | |
| !!! | GGAGGATGTTGTTGTTTTGA+GGG | - | chr1_3:19437132-19437151 | Msa0108140:CDS | 40.0% |
| TGAGGAGGTTAAGGTTAAAG+TGG | - | chr1_3:19437168-19437187 | Msa0108140:CDS | 40.0% | |
| TAAGGTTAAAGTGGAGGATG+TGG | - | chr1_3:19437177-19437196 | Msa0108140:CDS | 40.0% | |
| AGGATTTGAAGATTCGAGGT+AGG | - | chr1_3:19437245-19437264 | Msa0108140:CDS | 40.0% | |
| GGATTTGAAGATTCGAGGTA+GGG | - | chr1_3:19437246-19437265 | Msa0108140:CDS | 40.0% | |
| GAGAAGAGAGTGAATGGTAA+TGG | - | chr1_3:19437316-19437335 | Msa0108140:CDS | 40.0% | |
| !! | AAGAGAGTGAATGGTAATGG+CGG | - | chr1_3:19437319-19437338 | Msa0108140:CDS | 40.0% |
| TGTTAGTGGTAAGGAAGAGA+AGG | - | chr1_3:19437342-19437361 | Msa0108140:CDS | 40.0% | |
| GTTAGTGGTAAGGAAGAGAA+GGG | - | chr1_3:19437343-19437362 | Msa0108140:CDS | 40.0% | |
| TTAGTGGTAAGGAAGAGAAG+GGG | - | chr1_3:19437344-19437363 | Msa0108140:CDS | 40.0% | |
| TTACGAGTCATATTCGCGTA+AGG | - | chr1_3:19437386-19437405 | Msa0108140:CDS | 40.0% | |
| TACGAGTCATATTCGCGTAA+GGG | - | chr1_3:19437387-19437406 | Msa0108140:CDS | 40.0% | |
| TTAGTCGAAGTTTGAAAGGG+GGG | - | chr1_3:19437413-19437432 | Msa0108140:CDS | 40.0% | |
| !!! | GGAGAGGTTTTGGATGTTAT+TGG | - | chr1_3:19437454-19437473 | Msa0108140:CDS | 40.0% |
| GAGAGTAGGGAGATTATTCA+AGG | - | chr1_3:19437505-19437524 | Msa0108140:CDS | 40.0% | |
| GAGTAGGGAGATTATTCAAG+GGG | - | chr1_3:19437507-19437526 | Msa0108140:CDS | 40.0% | |
| TTCTCAAGATATGCTCGAGA+CGG | - | chr1_3:19437531-19437550 | Msa0108140:CDS | 40.0% | |
| GGACCTGTTCTTGTATTGTA+TGG | - | chr1_3:19437571-19437590 | Msa0108140:CDS | 40.0% | |
| !! | CTTTGGAAGTCTTGTTGAGA+GGG | - | chr1_3:19437609-19437628 | Msa0108140:CDS | 40.0% |
| !! | AAGTCTTGTTGAGAGGGATT+CGG | - | chr1_3:19437615-19437634 | Msa0108140:CDS | 40.0% |
| TTCAACATTGAGCCTCTCAT+GGG | + | chr1_3:19437674-19437693 | None:intergenic | 40.0% | |
| ATTCAACATTGAGCCTCTCA+TGG | + | chr1_3:19437675-19437694 | None:intergenic | 40.0% | |
| GAACACATGGCAGAGTATAT+AGG | - | chr1_3:19437697-19437716 | Msa0108140:CDS | 40.0% | |
| ACACATGGCAGAGTATATAG+GGG | - | chr1_3:19437699-19437718 | Msa0108140:CDS | 40.0% | |
| !! | TGAGGGTTTGTTCGATTTGG+AGG | + | chr1_3:19436417-19436436 | None:intergenic | 45.0% |
| !!! | GGGTTTTGGGAATTAGGGTT+TGG | + | chr1_3:19436514-19436533 | None:intergenic | 45.0% |
| ! | GATTGGGGGAATTAGGGTTT+TGG | + | chr1_3:19436528-19436547 | None:intergenic | 45.0% |
| !!! | CGCCATTGATTTTCGATTGG+GGG | + | chr1_3:19436542-19436561 | None:intergenic | 45.0% |
| !!! | GGACGCCATTGATTTTCGAT+TGG | + | chr1_3:19436545-19436564 | None:intergenic | 45.0% |
| TACAAACGTGAGGGAATGGT+CGG | + | chr1_3:19436615-19436634 | None:intergenic | 45.0% | |
| GGTATCAGGTACAAACGTGA+GGG | + | chr1_3:19436624-19436643 | None:intergenic | 45.0% | |
| TGGTATCAGGTACAAACGTG+AGG | + | chr1_3:19436625-19436644 | None:intergenic | 45.0% | |
| TGATCGGAAACTGTGGTATC+AGG | + | chr1_3:19436638-19436657 | None:intergenic | 45.0% | |
| AGACCGTACGATGAATTCTC+AGG | + | chr1_3:19436662-19436681 | None:intergenic | 45.0% | |
| GAGAAGTTGCCGGATGATAT+GGG | - | chr1_3:19436806-19436825 | Msa0108140:CDS | 45.0% | |
| AGAAGTTGCCGGATGATATG+GGG | - | chr1_3:19436807-19436826 | Msa0108140:CDS | 45.0% | |
| TGAGTATAAGGATGTACCGG+TGG | - | chr1_3:19436835-19436854 | Msa0108140:CDS | 45.0% | |
| ! | TATAAGGATGTACCGGTGGA+TGG | - | chr1_3:19436839-19436858 | Msa0108140:CDS | 45.0% |
| ! | ATAAGGATGTACCGGTGGAT+GGG | - | chr1_3:19436840-19436859 | Msa0108140:CDS | 45.0% |
| TGGAAAGAAGGAATGGGGAT+TGG | - | chr1_3:19436893-19436912 | Msa0108140:CDS | 45.0% | |
| GGAAAGAAGGAATGGGGATT+GGG | - | chr1_3:19436894-19436913 | Msa0108140:CDS | 45.0% | |
| GATTGGGAAGAATGCTAAGG+AGG | - | chr1_3:19436910-19436929 | Msa0108140:CDS | 45.0% | |
| GGAGGATGTGAAGATTGTTG+AGG | - | chr1_3:19436928-19436947 | Msa0108140:CDS | 45.0% | |
| AGATTGTTGAGGTGAAGAGG+AGG | - | chr1_3:19436939-19436958 | Msa0108140:CDS | 45.0% | |
| ! | TAAGGAGGGTTTAGGGTTTG+TGG | - | chr1_3:19436967-19436986 | Msa0108140:CDS | 45.0% |
| CTCTCACCTTTCTTCGAACT+CGG | + | chr1_3:19437007-19437026 | None:intergenic | 45.0% | |
| TCGAAGAAAGGTGAGAGGAA+TGG | - | chr1_3:19437010-19437029 | Msa0108140:CDS | 45.0% | |
| CGAAGAAAGGTGAGAGGAAT+GGG | - | chr1_3:19437011-19437030 | Msa0108140:CDS | 45.0% | |
| TTGTTAGGATTGTGAGAGGG+AGG | - | chr1_3:19437071-19437090 | Msa0108140:CDS | 45.0% | |
| TGTTAGGATTGTGAGAGGGA+GGG | - | chr1_3:19437072-19437091 | Msa0108140:CDS | 45.0% | |
| !!! | GGGAGGATGTTGTTGTTTTG+AGG | - | chr1_3:19437131-19437150 | Msa0108140:CDS | 45.0% |
| GGAGGTTAAGGTTAAAGTGG+AGG | - | chr1_3:19437171-19437190 | Msa0108140:CDS | 45.0% | |
| ! | GAGGTGTTTGAGGAAGTTGA+AGG | - | chr1_3:19437225-19437244 | Msa0108140:CDS | 45.0% |
| GTTGACGAGAAGAGAGTGAA+TGG | - | chr1_3:19437310-19437329 | Msa0108140:CDS | 45.0% | |
| !! | AATGGTAATGGCGGTGTTAG+TGG | - | chr1_3:19437328-19437347 | Msa0108140:CDS | 45.0% |
| ! | TAATGGCGGTGTTAGTGGTA+AGG | - | chr1_3:19437333-19437352 | Msa0108140:CDS | 45.0% |
| !! | GGTAAACATAAGGGTGCCTT+TGG | - | chr1_3:19437592-19437611 | Msa0108140:CDS | 45.0% |
| CCTCTCAACAAGACTTCCAA+AGG | + | chr1_3:19437611-19437630 | None:intergenic | 45.0% | |
| !! | CCTTTGGAAGTCTTGTTGAG+AGG | - | chr1_3:19437608-19437627 | Msa0108140:CDS | 45.0% |
| TGTTGAGAGGGATTCGGATA+AGG | - | chr1_3:19437621-19437640 | Msa0108140:CDS | 45.0% | |
| GTTGAGAGGGATTCGGATAA+GGG | - | chr1_3:19437622-19437641 | Msa0108140:CDS | 45.0% | |
| TTGAGAGGGATTCGGATAAG+GGG | - | chr1_3:19437623-19437642 | Msa0108140:CDS | 45.0% | |
| AAGATGCTGATACCCATGAG+AGG | - | chr1_3:19437659-19437678 | Msa0108140:CDS | 45.0% | |
| !! | TGAGGGTTTGTTCGATTTGG+AGG | + | chr1_3:19436417-19436436 | None:intergenic | 45.0% |
| !!! | GGGTTTTGGGAATTAGGGTT+TGG | + | chr1_3:19436514-19436533 | None:intergenic | 45.0% |
| ! | GATTGGGGGAATTAGGGTTT+TGG | + | chr1_3:19436528-19436547 | None:intergenic | 45.0% |
| !!! | CGCCATTGATTTTCGATTGG+GGG | + | chr1_3:19436542-19436561 | None:intergenic | 45.0% |
| !!! | GGACGCCATTGATTTTCGAT+TGG | + | chr1_3:19436545-19436564 | None:intergenic | 45.0% |
| TACAAACGTGAGGGAATGGT+CGG | + | chr1_3:19436615-19436634 | None:intergenic | 45.0% | |
| GGTATCAGGTACAAACGTGA+GGG | + | chr1_3:19436624-19436643 | None:intergenic | 45.0% | |
| TGGTATCAGGTACAAACGTG+AGG | + | chr1_3:19436625-19436644 | None:intergenic | 45.0% | |
| TGATCGGAAACTGTGGTATC+AGG | + | chr1_3:19436638-19436657 | None:intergenic | 45.0% | |
| AGACCGTACGATGAATTCTC+AGG | + | chr1_3:19436662-19436681 | None:intergenic | 45.0% | |
| GAGAAGTTGCCGGATGATAT+GGG | - | chr1_3:19436806-19436825 | Msa0108140:CDS | 45.0% | |
| AGAAGTTGCCGGATGATATG+GGG | - | chr1_3:19436807-19436826 | Msa0108140:CDS | 45.0% | |
| TGAGTATAAGGATGTACCGG+TGG | - | chr1_3:19436835-19436854 | Msa0108140:CDS | 45.0% | |
| ! | TATAAGGATGTACCGGTGGA+TGG | - | chr1_3:19436839-19436858 | Msa0108140:CDS | 45.0% |
| ! | ATAAGGATGTACCGGTGGAT+GGG | - | chr1_3:19436840-19436859 | Msa0108140:CDS | 45.0% |
| TGGAAAGAAGGAATGGGGAT+TGG | - | chr1_3:19436893-19436912 | Msa0108140:CDS | 45.0% | |
| GGAAAGAAGGAATGGGGATT+GGG | - | chr1_3:19436894-19436913 | Msa0108140:CDS | 45.0% | |
| GATTGGGAAGAATGCTAAGG+AGG | - | chr1_3:19436910-19436929 | Msa0108140:CDS | 45.0% | |
| GGAGGATGTGAAGATTGTTG+AGG | - | chr1_3:19436928-19436947 | Msa0108140:CDS | 45.0% | |
| AGATTGTTGAGGTGAAGAGG+AGG | - | chr1_3:19436939-19436958 | Msa0108140:CDS | 45.0% | |
| ! | TAAGGAGGGTTTAGGGTTTG+TGG | - | chr1_3:19436967-19436986 | Msa0108140:CDS | 45.0% |
| CTCTCACCTTTCTTCGAACT+CGG | + | chr1_3:19437007-19437026 | None:intergenic | 45.0% | |
| TCGAAGAAAGGTGAGAGGAA+TGG | - | chr1_3:19437010-19437029 | Msa0108140:CDS | 45.0% | |
| CGAAGAAAGGTGAGAGGAAT+GGG | - | chr1_3:19437011-19437030 | Msa0108140:CDS | 45.0% | |
| TTGTTAGGATTGTGAGAGGG+AGG | - | chr1_3:19437071-19437090 | Msa0108140:CDS | 45.0% | |
| TGTTAGGATTGTGAGAGGGA+GGG | - | chr1_3:19437072-19437091 | Msa0108140:CDS | 45.0% | |
| !!! | GGGAGGATGTTGTTGTTTTG+AGG | - | chr1_3:19437131-19437150 | Msa0108140:CDS | 45.0% |
| GGAGGTTAAGGTTAAAGTGG+AGG | - | chr1_3:19437171-19437190 | Msa0108140:CDS | 45.0% | |
| ! | GAGGTGTTTGAGGAAGTTGA+AGG | - | chr1_3:19437225-19437244 | Msa0108140:CDS | 45.0% |
| GTTGACGAGAAGAGAGTGAA+TGG | - | chr1_3:19437310-19437329 | Msa0108140:CDS | 45.0% | |
| !! | AATGGTAATGGCGGTGTTAG+TGG | - | chr1_3:19437328-19437347 | Msa0108140:CDS | 45.0% |
| ! | TAATGGCGGTGTTAGTGGTA+AGG | - | chr1_3:19437333-19437352 | Msa0108140:CDS | 45.0% |
| !! | GGTAAACATAAGGGTGCCTT+TGG | - | chr1_3:19437592-19437611 | Msa0108140:CDS | 45.0% |
| CCTCTCAACAAGACTTCCAA+AGG | + | chr1_3:19437611-19437630 | None:intergenic | 45.0% | |
| !! | CCTTTGGAAGTCTTGTTGAG+AGG | - | chr1_3:19437608-19437627 | Msa0108140:CDS | 45.0% |
| TGTTGAGAGGGATTCGGATA+AGG | - | chr1_3:19437621-19437640 | Msa0108140:CDS | 45.0% | |
| GTTGAGAGGGATTCGGATAA+GGG | - | chr1_3:19437622-19437641 | Msa0108140:CDS | 45.0% | |
| TTGAGAGGGATTCGGATAAG+GGG | - | chr1_3:19437623-19437642 | Msa0108140:CDS | 45.0% | |
| AAGATGCTGATACCCATGAG+AGG | - | chr1_3:19437659-19437678 | Msa0108140:CDS | 45.0% | |
| TCGGAGTGTGAATCGGTGAT+TGG | + | chr1_3:19436596-19436615 | None:intergenic | 50.0% | |
| GGAATGGTCGGAGTGTGAAT+CGG | + | chr1_3:19436603-19436622 | None:intergenic | 50.0% | |
| CAGGTACAAACGTGAGGGAA+TGG | + | chr1_3:19436619-19436638 | None:intergenic | 50.0% | |
| !! | CTCAGGTTGATCGGAAACTG+TGG | + | chr1_3:19436645-19436664 | None:intergenic | 50.0% |
| GGAGGATATGGAGAAGTTGC+CGG | - | chr1_3:19436796-19436815 | Msa0108140:CDS | 50.0% | |
| GGAGAAGTTGCCGGATGATA+TGG | - | chr1_3:19436805-19436824 | Msa0108140:CDS | 50.0% | |
| GGTGGGTATGGATGGAAAGA+AGG | - | chr1_3:19436881-19436900 | Msa0108140:CDS | 50.0% | |
| GGGGATTGGGAAGAATGCTA+AGG | - | chr1_3:19436907-19436926 | Msa0108140:CDS | 50.0% | |
| ! | AAGAGGAGGACTGGTAAGGA+GGG | - | chr1_3:19436953-19436972 | Msa0108140:CDS | 50.0% |
| ! | AGGACTGGTAAGGAGGGTTT+AGG | - | chr1_3:19436959-19436978 | Msa0108140:CDS | 50.0% |
| ! | GGACTGGTAAGGAGGGTTTA+GGG | - | chr1_3:19436960-19436979 | Msa0108140:CDS | 50.0% |
| TCACCTTTCTTCGAACTCGG+AGG | + | chr1_3:19437004-19437023 | None:intergenic | 50.0% | |
| CGAGTTCGAAGAAAGGTGAG+AGG | - | chr1_3:19437005-19437024 | Msa0108140:CDS | 50.0% | |
| AGAAAGGTGAGAGGAATGGG+AGG | - | chr1_3:19437014-19437033 | Msa0108140:CDS | 50.0% | |
| GAAAGGTGAGAGGAATGGGA+GGG | - | chr1_3:19437015-19437034 | Msa0108140:CDS | 50.0% | |
| AAAGGTGAGAGGAATGGGAG+GGG | - | chr1_3:19437016-19437035 | Msa0108140:CDS | 50.0% | |
| GGAGAGTGAGAGGAAGAAGA+AGG | - | chr1_3:19437039-19437058 | Msa0108140:CDS | 50.0% | |
| GAGTGAGAGGAAGAAGAAGG+AGG | - | chr1_3:19437042-19437061 | Msa0108140:CDS | 50.0% | |
| ATTGTGAGAGGGAGGGATGT+TGG | - | chr1_3:19437079-19437098 | Msa0108140:CDS | 50.0% | |
| CTAGTGTTGTCGGGAGAGAT+GGG | - | chr1_3:19437110-19437129 | Msa0108140:CDS | 50.0% | |
| TAGTGTTGTCGGGAGAGATG+GGG | - | chr1_3:19437111-19437130 | Msa0108140:CDS | 50.0% | |
| !!! | GTTTTGAGGGTTTTGGGGAG+TGG | - | chr1_3:19437145-19437164 | Msa0108140:CDS | 50.0% |
| GGTTAAAGTGGAGGATGTGG+CGG | - | chr1_3:19437180-19437199 | Msa0108140:CDS | 50.0% | |
| !! | TTGAGGAGGAGAGGTGTTTG+AGG | - | chr1_3:19437215-19437234 | Msa0108140:CDS | 50.0% |
| GAAGATTCGAGGTAGGGATG+AGG | - | chr1_3:19437252-19437271 | Msa0108140:CDS | 50.0% | |
| GAGGTAGGGATGAGGAGAAA+GGG | - | chr1_3:19437260-19437279 | Msa0108140:CDS | 50.0% | |
| AAAGGGTCGAAGAGTAAGCG+AGG | - | chr1_3:19437277-19437296 | Msa0108140:CDS | 50.0% | |
| AAGGGTCGAAGAGTAAGCGA+GGG | - | chr1_3:19437278-19437297 | Msa0108140:CDS | 50.0% | |
| TGACTCGTAAGCCACGAAAC+CGG | + | chr1_3:19437376-19437395 | None:intergenic | 50.0% | |
| AGGGATTCGGATAAGGGGAT+TGG | - | chr1_3:19437628-19437647 | Msa0108140:CDS | 50.0% | |
| TATAGGGGACCCAAGCTTAC+TGG | - | chr1_3:19437714-19437733 | Msa0108140:CDS | 50.0% | |
| ATAGGGGACCCAAGCTTACT+GGG | - | chr1_3:19437715-19437734 | Msa0108140:CDS | 50.0% | |
| TCGGAGTGTGAATCGGTGAT+TGG | + | chr1_3:19436596-19436615 | None:intergenic | 50.0% | |
| GGAATGGTCGGAGTGTGAAT+CGG | + | chr1_3:19436603-19436622 | None:intergenic | 50.0% | |
| CAGGTACAAACGTGAGGGAA+TGG | + | chr1_3:19436619-19436638 | None:intergenic | 50.0% | |
| !! | CTCAGGTTGATCGGAAACTG+TGG | + | chr1_3:19436645-19436664 | None:intergenic | 50.0% |
| GGAGGATATGGAGAAGTTGC+CGG | - | chr1_3:19436796-19436815 | Msa0108140:CDS | 50.0% | |
| GGAGAAGTTGCCGGATGATA+TGG | - | chr1_3:19436805-19436824 | Msa0108140:CDS | 50.0% | |
| GGTGGGTATGGATGGAAAGA+AGG | - | chr1_3:19436881-19436900 | Msa0108140:CDS | 50.0% | |
| GGGGATTGGGAAGAATGCTA+AGG | - | chr1_3:19436907-19436926 | Msa0108140:CDS | 50.0% | |
| ! | AAGAGGAGGACTGGTAAGGA+GGG | - | chr1_3:19436953-19436972 | Msa0108140:CDS | 50.0% |
| ! | AGGACTGGTAAGGAGGGTTT+AGG | - | chr1_3:19436959-19436978 | Msa0108140:CDS | 50.0% |
| ! | GGACTGGTAAGGAGGGTTTA+GGG | - | chr1_3:19436960-19436979 | Msa0108140:CDS | 50.0% |
| TCACCTTTCTTCGAACTCGG+AGG | + | chr1_3:19437004-19437023 | None:intergenic | 50.0% | |
| CGAGTTCGAAGAAAGGTGAG+AGG | - | chr1_3:19437005-19437024 | Msa0108140:CDS | 50.0% | |
| AGAAAGGTGAGAGGAATGGG+AGG | - | chr1_3:19437014-19437033 | Msa0108140:CDS | 50.0% | |
| GAAAGGTGAGAGGAATGGGA+GGG | - | chr1_3:19437015-19437034 | Msa0108140:CDS | 50.0% | |
| AAAGGTGAGAGGAATGGGAG+GGG | - | chr1_3:19437016-19437035 | Msa0108140:CDS | 50.0% | |
| GGAGAGTGAGAGGAAGAAGA+AGG | - | chr1_3:19437039-19437058 | Msa0108140:CDS | 50.0% | |
| GAGTGAGAGGAAGAAGAAGG+AGG | - | chr1_3:19437042-19437061 | Msa0108140:CDS | 50.0% | |
| ATTGTGAGAGGGAGGGATGT+TGG | - | chr1_3:19437079-19437098 | Msa0108140:CDS | 50.0% | |
| CTAGTGTTGTCGGGAGAGAT+GGG | - | chr1_3:19437110-19437129 | Msa0108140:CDS | 50.0% | |
| TAGTGTTGTCGGGAGAGATG+GGG | - | chr1_3:19437111-19437130 | Msa0108140:CDS | 50.0% | |
| !!! | GTTTTGAGGGTTTTGGGGAG+TGG | - | chr1_3:19437145-19437164 | Msa0108140:CDS | 50.0% |
| GGTTAAAGTGGAGGATGTGG+CGG | - | chr1_3:19437180-19437199 | Msa0108140:CDS | 50.0% | |
| !! | TTGAGGAGGAGAGGTGTTTG+AGG | - | chr1_3:19437215-19437234 | Msa0108140:CDS | 50.0% |
| GAAGATTCGAGGTAGGGATG+AGG | - | chr1_3:19437252-19437271 | Msa0108140:CDS | 50.0% | |
| GAGGTAGGGATGAGGAGAAA+GGG | - | chr1_3:19437260-19437279 | Msa0108140:CDS | 50.0% | |
| AAAGGGTCGAAGAGTAAGCG+AGG | - | chr1_3:19437277-19437296 | Msa0108140:CDS | 50.0% | |
| AAGGGTCGAAGAGTAAGCGA+GGG | - | chr1_3:19437278-19437297 | Msa0108140:CDS | 50.0% | |
| TGACTCGTAAGCCACGAAAC+CGG | + | chr1_3:19437376-19437395 | None:intergenic | 50.0% | |
| AGGGATTCGGATAAGGGGAT+TGG | - | chr1_3:19437628-19437647 | Msa0108140:CDS | 50.0% | |
| TATAGGGGACCCAAGCTTAC+TGG | - | chr1_3:19437714-19437733 | Msa0108140:CDS | 50.0% | |
| ATAGGGGACCCAAGCTTACT+GGG | - | chr1_3:19437715-19437734 | Msa0108140:CDS | 50.0% | |
| TGCCAATGCTGATGCACCGA+GGG | - | chr1_3:19436733-19436752 | Msa0108140:CDS | 55.0% | |
| TCAACCGAAGCCTTCACCCT+CGG | + | chr1_3:19436752-19436771 | None:intergenic | 55.0% | |
| ! | GATGTACCGGTGGATGGGTT+TGG | - | chr1_3:19436845-19436864 | Msa0108140:CDS | 55.0% |
| ! | CGTTGCTTGGTGGGTATGGA+TGG | - | chr1_3:19436873-19436892 | Msa0108140:CDS | 55.0% |
| GTTGAGGTGAAGAGGAGGAC+TGG | - | chr1_3:19436944-19436963 | Msa0108140:CDS | 55.0% | |
| ! | GGTGAAGAGGAGGACTGGTA+AGG | - | chr1_3:19436949-19436968 | Msa0108140:CDS | 55.0% |
| ! | GAAGAGGAGGACTGGTAAGG+AGG | - | chr1_3:19436952-19436971 | Msa0108140:CDS | 55.0% |
| CCTTTCTTCGAACTCGGAGG+TGG | + | chr1_3:19437001-19437020 | None:intergenic | 55.0% | |
| CCACCTCCGAGTTCGAAGAA+AGG | - | chr1_3:19436998-19437017 | Msa0108140:CDS | 55.0% | |
| AAGGTGAGAGGAATGGGAGG+GGG | - | chr1_3:19437017-19437036 | Msa0108140:CDS | 55.0% | |
| GCTAGTGTTGTCGGGAGAGA+TGG | - | chr1_3:19437109-19437128 | Msa0108140:CDS | 55.0% | |
| CGAGGTAGGGATGAGGAGAA+AGG | - | chr1_3:19437259-19437278 | Msa0108140:CDS | 55.0% | |
| GTCGAAGAGTAAGCGAGGGA+GGG | - | chr1_3:19437282-19437301 | Msa0108140:CDS | 55.0% | |
| GTGGTAAGGAAGAGAAGGGG+AGG | - | chr1_3:19437347-19437366 | Msa0108140:CDS | 55.0% | |
| GGAAGAGAAGGGGAGGAAAC+CGG | - | chr1_3:19437354-19437373 | Msa0108140:CDS | 55.0% | |
| AGACGGCTATTCCACGACGA+GGG | - | chr1_3:19437548-19437567 | Msa0108140:CDS | 55.0% | |
| TGCCAATGCTGATGCACCGA+GGG | - | chr1_3:19436733-19436752 | Msa0108140:CDS | 55.0% | |
| TCAACCGAAGCCTTCACCCT+CGG | + | chr1_3:19436752-19436771 | None:intergenic | 55.0% | |
| ! | GATGTACCGGTGGATGGGTT+TGG | - | chr1_3:19436845-19436864 | Msa0108140:CDS | 55.0% |
| ! | CGTTGCTTGGTGGGTATGGA+TGG | - | chr1_3:19436873-19436892 | Msa0108140:CDS | 55.0% |
| GTTGAGGTGAAGAGGAGGAC+TGG | - | chr1_3:19436944-19436963 | Msa0108140:CDS | 55.0% | |
| ! | GGTGAAGAGGAGGACTGGTA+AGG | - | chr1_3:19436949-19436968 | Msa0108140:CDS | 55.0% |
| ! | GAAGAGGAGGACTGGTAAGG+AGG | - | chr1_3:19436952-19436971 | Msa0108140:CDS | 55.0% |
| CCTTTCTTCGAACTCGGAGG+TGG | + | chr1_3:19437001-19437020 | None:intergenic | 55.0% | |
| CCACCTCCGAGTTCGAAGAA+AGG | - | chr1_3:19436998-19437017 | Msa0108140:CDS | 55.0% | |
| AAGGTGAGAGGAATGGGAGG+GGG | - | chr1_3:19437017-19437036 | Msa0108140:CDS | 55.0% | |
| GCTAGTGTTGTCGGGAGAGA+TGG | - | chr1_3:19437109-19437128 | Msa0108140:CDS | 55.0% | |
| CGAGGTAGGGATGAGGAGAA+AGG | - | chr1_3:19437259-19437278 | Msa0108140:CDS | 55.0% | |
| GTCGAAGAGTAAGCGAGGGA+GGG | - | chr1_3:19437282-19437301 | Msa0108140:CDS | 55.0% | |
| GTGGTAAGGAAGAGAAGGGG+AGG | - | chr1_3:19437347-19437366 | Msa0108140:CDS | 55.0% | |
| GGAAGAGAAGGGGAGGAAAC+CGG | - | chr1_3:19437354-19437373 | Msa0108140:CDS | 55.0% | |
| AGACGGCTATTCCACGACGA+GGG | - | chr1_3:19437548-19437567 | Msa0108140:CDS | 55.0% | |
| CTGCCAATGCTGATGCACCG+AGG | - | chr1_3:19436732-19436751 | Msa0108140:CDS | 60.0% | |
| ! | CACCCTCGGTGCATCAGCAT+TGG | + | chr1_3:19436738-19436757 | None:intergenic | 60.0% |
| TGCTGATGCACCGAGGGTGA+AGG | - | chr1_3:19436739-19436758 | Msa0108140:CDS | 60.0% | |
| TGCACCGAGGGTGAAGGCTT+CGG | - | chr1_3:19436745-19436764 | Msa0108140:CDS | 60.0% | |
| GAGGGTGAAGGCTTCGGTTG+AGG | - | chr1_3:19436751-19436770 | Msa0108140:CDS | 60.0% | |
| !! | ACCGGTGGATGGGTTTGGTG+CGG | - | chr1_3:19436850-19436869 | Msa0108140:CDS | 60.0% |
| ! | TTTGGTGCGGCGTTGCTTGG+TGG | - | chr1_3:19436863-19436882 | Msa0108140:CDS | 60.0% |
| TTGGTGCGGCGTTGCTTGGT+GGG | - | chr1_3:19436864-19436883 | Msa0108140:CDS | 60.0% | |
| AGGTGAGAGGAATGGGAGGG+GGG | - | chr1_3:19437018-19437037 | Msa0108140:CDS | 60.0% | |
| TGTTGTCGGGAGAGATGGGG+AGG | - | chr1_3:19437114-19437133 | Msa0108140:CDS | 60.0% | |
| !!! | GAGGGTTTTGGGGAGTGGTG+AGG | - | chr1_3:19437150-19437169 | Msa0108140:CDS | 60.0% |
| !!! | GGTTTTGGGGAGTGGTGAGG+AGG | - | chr1_3:19437153-19437172 | Msa0108140:CDS | 60.0% |
| GGGGAGTGGTGAGGAGGTTA+AGG | - | chr1_3:19437159-19437178 | Msa0108140:CDS | 60.0% | |
| ! | AGTGGAGGATGTGGCGGAGT+TGG | - | chr1_3:19437186-19437205 | Msa0108140:CDS | 60.0% |
| ! | GTGGAGGATGTGGCGGAGTT+GGG | - | chr1_3:19437187-19437206 | Msa0108140:CDS | 60.0% |
| ! | GGATGTGGCGGAGTTGGGTT+CGG | - | chr1_3:19437192-19437211 | Msa0108140:CDS | 60.0% |
| ! | GGAGTTGGGTTCGGTTGAGG+AGG | - | chr1_3:19437201-19437220 | Msa0108140:CDS | 60.0% |
| ! | TGGGTTCGGTTGAGGAGGAG+AGG | - | chr1_3:19437206-19437225 | Msa0108140:CDS | 60.0% |
| GGTCGAAGAGTAAGCGAGGG+AGG | - | chr1_3:19437281-19437300 | Msa0108140:CDS | 60.0% | |
| GAGTAAGCGAGGGAGGGATG+AGG | - | chr1_3:19437288-19437307 | Msa0108140:CDS | 60.0% | |
| ! | AGGGGAGGAAACCGGTTTCG+TGG | - | chr1_3:19437362-19437381 | Msa0108140:CDS | 60.0% |
| GAGACGGCTATTCCACGACG+AGG | - | chr1_3:19437547-19437566 | Msa0108140:CDS | 60.0% | |
| GACGGCTATTCCACGACGAG+GGG | - | chr1_3:19437549-19437568 | Msa0108140:CDS | 60.0% | |
| ACGGCTATTCCACGACGAGG+GGG | - | chr1_3:19437550-19437569 | Msa0108140:CDS | 60.0% | |
| CTGCCAATGCTGATGCACCG+AGG | - | chr1_3:19436732-19436751 | Msa0108140:CDS | 60.0% | |
| ! | CACCCTCGGTGCATCAGCAT+TGG | + | chr1_3:19436738-19436757 | None:intergenic | 60.0% |
| TGCTGATGCACCGAGGGTGA+AGG | - | chr1_3:19436739-19436758 | Msa0108140:CDS | 60.0% | |
| TGCACCGAGGGTGAAGGCTT+CGG | - | chr1_3:19436745-19436764 | Msa0108140:CDS | 60.0% | |
| GAGGGTGAAGGCTTCGGTTG+AGG | - | chr1_3:19436751-19436770 | Msa0108140:CDS | 60.0% | |
| !! | ACCGGTGGATGGGTTTGGTG+CGG | - | chr1_3:19436850-19436869 | Msa0108140:CDS | 60.0% |
| ! | TTTGGTGCGGCGTTGCTTGG+TGG | - | chr1_3:19436863-19436882 | Msa0108140:CDS | 60.0% |
| TTGGTGCGGCGTTGCTTGGT+GGG | - | chr1_3:19436864-19436883 | Msa0108140:CDS | 60.0% | |
| AGGTGAGAGGAATGGGAGGG+GGG | - | chr1_3:19437018-19437037 | Msa0108140:CDS | 60.0% | |
| TGTTGTCGGGAGAGATGGGG+AGG | - | chr1_3:19437114-19437133 | Msa0108140:CDS | 60.0% | |
| !!! | GAGGGTTTTGGGGAGTGGTG+AGG | - | chr1_3:19437150-19437169 | Msa0108140:CDS | 60.0% |
| !!! | GGTTTTGGGGAGTGGTGAGG+AGG | - | chr1_3:19437153-19437172 | Msa0108140:CDS | 60.0% |
| GGGGAGTGGTGAGGAGGTTA+AGG | - | chr1_3:19437159-19437178 | Msa0108140:CDS | 60.0% | |
| ! | AGTGGAGGATGTGGCGGAGT+TGG | - | chr1_3:19437186-19437205 | Msa0108140:CDS | 60.0% |
| ! | GTGGAGGATGTGGCGGAGTT+GGG | - | chr1_3:19437187-19437206 | Msa0108140:CDS | 60.0% |
| ! | GGATGTGGCGGAGTTGGGTT+CGG | - | chr1_3:19437192-19437211 | Msa0108140:CDS | 60.0% |
| ! | GGAGTTGGGTTCGGTTGAGG+AGG | - | chr1_3:19437201-19437220 | Msa0108140:CDS | 60.0% |
| ! | TGGGTTCGGTTGAGGAGGAG+AGG | - | chr1_3:19437206-19437225 | Msa0108140:CDS | 60.0% |
| GGTCGAAGAGTAAGCGAGGG+AGG | - | chr1_3:19437281-19437300 | Msa0108140:CDS | 60.0% | |
| GAGTAAGCGAGGGAGGGATG+AGG | - | chr1_3:19437288-19437307 | Msa0108140:CDS | 60.0% | |
| ! | AGGGGAGGAAACCGGTTTCG+TGG | - | chr1_3:19437362-19437381 | Msa0108140:CDS | 60.0% |
| GAGACGGCTATTCCACGACG+AGG | - | chr1_3:19437547-19437566 | Msa0108140:CDS | 60.0% | |
| GACGGCTATTCCACGACGAG+GGG | - | chr1_3:19437549-19437568 | Msa0108140:CDS | 60.0% | |
| ACGGCTATTCCACGACGAGG+GGG | - | chr1_3:19437550-19437569 | Msa0108140:CDS | 60.0% | |
| GCCGCACCAAACCCATCCAC+CGG | + | chr1_3:19436854-19436873 | None:intergenic | 65.0% | |
| !! | GGGTTTGGTGCGGCGTTGCT+TGG | - | chr1_3:19436860-19436879 | Msa0108140:CDS | 65.0% |
| ! | GCGGCGTTGCTTGGTGGGTA+TGG | - | chr1_3:19436869-19436888 | Msa0108140:CDS | 65.0% |
| ATGGGAGGGGGGAGAGTGAG+AGG | - | chr1_3:19437029-19437048 | Msa0108140:CDS | 65.0% | |
| ! | GGCGGAGTTGGGTTCGGTTG+AGG | - | chr1_3:19437198-19437217 | Msa0108140:CDS | 65.0% |
| AGAACAGGTCCCCCTCGTCG+TGG | + | chr1_3:19437562-19437581 | None:intergenic | 65.0% | |
| GCCGCACCAAACCCATCCAC+CGG | + | chr1_3:19436854-19436873 | None:intergenic | 65.0% | |
| !! | GGGTTTGGTGCGGCGTTGCT+TGG | - | chr1_3:19436860-19436879 | Msa0108140:CDS | 65.0% |
| ! | GCGGCGTTGCTTGGTGGGTA+TGG | - | chr1_3:19436869-19436888 | Msa0108140:CDS | 65.0% |
| ATGGGAGGGGGGAGAGTGAG+AGG | - | chr1_3:19437029-19437048 | Msa0108140:CDS | 65.0% | |
| ! | GGCGGAGTTGGGTTCGGTTG+AGG | - | chr1_3:19437198-19437217 | Msa0108140:CDS | 65.0% |
| AGAACAGGTCCCCCTCGTCG+TGG | + | chr1_3:19437562-19437581 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 19436371 | 19437744 | 19436371 | ID=Msa0108140;Name=Msa0108140 |
| chr1_3 | mRNA | 19436371 | 19437744 | 19436371 | ID=Msa0108140-mRNA-1;Parent=Msa0108140;Name=Msa0108140-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|457 |
| chr1_3 | exon | 19436371 | 19437744 | 19436371 | ID=Msa0108140-mRNA-1:exon:7020;Parent=Msa0108140-mRNA-1 |
| chr1_3 | CDS | 19436371 | 19437744 | 19436371 | ID=Msa0108140-mRNA-1:cds;Parent=Msa0108140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
