AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0207040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207040 MtrunA17_Chr2g0301711 98.238 227 4 0 1 227 1 227 2.59e-163 450
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207040 AT5G49010.1 58.150 227 88 2 1 227 1 220 2.87e-86 255
Msa0207040 AT5G49010.2 59.770 174 66 1 1 174 1 170 5.41e-66 202

Find 77 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTTCCAGTTTGACATTT+TGG 0.143575 2_1:+37459929 None:intergenic
ATAGAACCTTATTTCTATTA+AGG 0.244460 2_1:-37462387 Msa0207040:CDS
CATCTCTCTCGCATTCATTC+AGG 0.267014 2_1:-37464901 Msa0207040:intron
AACTTTGGAACAGACTTTCT+AGG 0.280314 2_1:-37461929 Msa0207040:CDS
ATATGACCTTAATAGAAATA+AGG 0.379930 2_1:+37462381 None:intergenic
CAAAACAAACGTGTCTAGTT+GGG 0.387676 2_1:+37460317 None:intergenic
TGTTGGTAGTGACCCTCTTT+CGG 0.388310 2_1:-37462434 Msa0207040:CDS
CAAAGGACAGATTGAATTGA+TGG 0.395331 2_1:-37462743 Msa0207040:intron
AGAGATGCTGCTGCTGGTGC+TGG 0.395913 2_1:+37464917 None:intergenic
GAGGGTGAGAGACGAAAGTG+GGG 0.403121 2_1:+37464969 None:intergenic
GTGAGGGTGAGAGACGAAAG+TGG 0.405718 2_1:+37464967 None:intergenic
GTTGATCCAAAATGTCAAAC+TGG 0.422128 2_1:-37459935 Msa0207040:three_prime_UTR
TGCTCTCTAGATGTTCCTTC+AGG 0.422302 2_1:+37461739 None:intergenic
ATAAACAAGTATTAAGAAAA+CGG 0.430227 2_1:+37459961 None:intergenic
AACATCAGTGGTTGAAATCA+AGG 0.435422 2_1:+37462846 None:intergenic
CATATGAAGTAAAGGACATC+AGG 0.443528 2_1:+37460133 None:intergenic
TCACCCTCACCCCACTCTCT+TGG 0.447372 2_1:-37464954 Msa0207040:five_prime_UTR
ACAAAACAAACGTGTCTAGT+TGG 0.453499 2_1:+37460316 None:intergenic
TGAGGGTGAGAGACGAAAGT+GGG 0.454037 2_1:+37464968 None:intergenic
GATAATTGCCTGTCGTCAAC+AGG 0.460629 2_1:+37460249 None:intergenic
TAAACAAGTATTAAGAAAAC+GGG 0.461678 2_1:+37459962 None:intergenic
TGACAACAAGTACTTGAATC+AGG 0.461887 2_1:+37459882 None:intergenic
GATTCAAAACGAAGAATCTC+GGG 0.462194 2_1:+37462784 None:intergenic
CAAGTAACAATAGCAATAGA+AGG 0.467565 2_1:+37460014 None:intergenic
GAGAAGAGTGACCAAGAGAG+TGG 0.470849 2_1:+37464943 None:intergenic
ATCCATGGGTTCAAGATCTA+CGG 0.481878 2_1:-37462905 Msa0207040:exon
TGCGAGAGAGATGCTGCTGC+TGG 0.483240 2_1:+37464911 None:intergenic
CAAGTGAACAATGTTGATAT+TGG 0.492003 2_1:-37460058 Msa0207040:three_prime_UTR
ACTTTGGAACAGACTTTCTA+GGG 0.492617 2_1:-37461928 Msa0207040:CDS
AGATTCAAAACGAAGAATCT+CGG 0.501966 2_1:+37462783 None:intergenic
TTCGGTATCTCTGTATCAGA+TGG 0.507949 2_1:-37462416 Msa0207040:CDS
AACGTGTCTAGTTGGGGTGC+TGG 0.509310 2_1:+37460324 None:intergenic
GCGAGCATGGCGTAACGAAA+AGG 0.511669 2_1:-37462812 Msa0207040:CDS
ATAAAACCACTTGTAGAGAG+TGG 0.514618 2_1:-37460100 Msa0207040:CDS
GATGTGCGCGGGAGAGAAGA+AGG 0.515073 2_1:+37465059 None:intergenic
GATTTGATCAACCGCGTCAA+AGG 0.524234 2_1:-37462760 Msa0207040:CDS
TTCCGTAGATCTTGAACCCA+TGG 0.527155 2_1:+37462903 None:intergenic
TGACCAAGAGAGTGGGGTGA+GGG 0.531350 2_1:+37464951 None:intergenic
GTGACCAAGAGAGTGGGGTG+AGG 0.533743 2_1:+37464950 None:intergenic
GACTGATTACCTTCAGGATG+CGG 0.542811 2_1:+37462350 None:intergenic
CGAGCAATATTAGCCAATAG+TGG 0.543022 2_1:-37459821 Msa0207040:three_prime_UTR
ACAGGAATTCAACTTGAAGA+TGG 0.546681 2_1:-37460273 Msa0207040:CDS
AGAAGAGTGACCAAGAGAGT+GGG 0.547555 2_1:+37464944 None:intergenic
AAGATGGACCTGTTGACGAC+AGG 0.548763 2_1:-37460257 Msa0207040:intron
CATTAGTGAAGAGGATGACA+TGG 0.553868 2_1:-37461664 Msa0207040:CDS
ACTTGTAACATATGAAGTAA+AGG 0.556503 2_1:+37460125 None:intergenic
TTGAGCTTCTCAAGCGAGCA+TGG 0.560140 2_1:-37462825 Msa0207040:CDS
CAGGTCGAAGCTGTTTGAGA+TGG 0.566678 2_1:-37460158 Msa0207040:CDS
ACAATCTGTCATTAGTGAAG+AGG 0.570258 2_1:-37461673 Msa0207040:CDS
TCTTCGCATCCGCATCCTGA+AGG 0.576234 2_1:-37462359 Msa0207040:intron
TGATACAGAGATACCGAAAG+AGG 0.579183 2_1:+37462421 None:intergenic
TAAAACCACTTGTAGAGAGT+GGG 0.580787 2_1:-37460099 Msa0207040:CDS
CAATTTCAATTCAGAACAAG+CGG 0.583310 2_1:-37465013 Msa0207040:five_prime_UTR
ATGCTGCTGCTGGTGCTGGA+AGG 0.585579 2_1:+37464921 None:intergenic
CAATGTTGATATTGGTGCAA+TGG 0.599782 2_1:-37460050 Msa0207040:three_prime_UTR
AGAAGTAAAGAATATCTCAC+AGG 0.604102 2_1:-37460291 Msa0207040:CDS
CTGTGTTGCGAGATGTGCGC+GGG 0.605204 2_1:+37465048 None:intergenic
CTTGAGAAGCTCAACATCAG+TGG 0.611012 2_1:+37462834 None:intergenic
AAAACAAACGTGTCTAGTTG+GGG 0.617226 2_1:+37460318 None:intergenic
GAAGAGTGACCAAGAGAGTG+GGG 0.624641 2_1:+37464945 None:intergenic
CGCGGGAGAGAAGAAGGTGA+TGG 0.625947 2_1:+37465065 None:intergenic
TTGAATCAGGAAAACACCTA+CGG 0.628254 2_1:+37459895 None:intergenic
AATGAAAAGAACCAAGAGCA+TGG 0.636709 2_1:+37462991 None:intergenic
AGCATTGTGATTTATTCCGT+AGG 0.641637 2_1:-37459911 Msa0207040:three_prime_UTR
AGGGTGAGAGACGAAAGTGG+GGG 0.646647 2_1:+37464970 None:intergenic
GGGTGAGAGACGAAAGTGGG+GGG 0.647545 2_1:+37464971 None:intergenic
GATACAGAGATACCGAAAGA+GGG 0.651435 2_1:+37462422 None:intergenic
CAGGTGCACAGATGACCTGA+AGG 0.652118 2_1:-37461754 Msa0207040:CDS
TCTGAATTGAAATTGAGTTG+CGG 0.657684 2_1:+37465021 None:intergenic
ATGGGTTCAAGATCTACGGA+AGG 0.674495 2_1:-37462901 Msa0207040:CDS
GTGGAGGAGAAATTGTCTGT+TGG 0.675278 2_1:-37462451 Msa0207040:CDS
ATTCAAAACGAAGAATCTCG+GGG 0.677114 2_1:+37462785 None:intergenic
TTTACAGGAAGAAACTGTGG+AGG 0.680524 2_1:-37462467 Msa0207040:intron
ATTCAATCTGTCCTTTGACG+CGG 0.682411 2_1:+37462749 None:intergenic
ACTGTGTTGCGAGATGTGCG+CGG 0.684149 2_1:+37465047 None:intergenic
ATTAGTGAAGAGGATGACAT+GGG 0.687742 2_1:-37461663 Msa0207040:intron
TTCAAAACGAAGAATCTCGG+GGG 0.737687 2_1:+37462786 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTCTGAAATTGAAATT+TGG - chr2_1:37460056-37460075 Msa0207040:three_prime_UTR 15.0%
!!! ATTGAAATTTGGATTTTTAT+AGG - chr2_1:37460067-37460086 Msa0207040:exon 15.0%
!!! TTGAAATTTGGATTTTTATA+GGG - chr2_1:37460068-37460087 Msa0207040:exon 15.0%
!! TATGAATCTAAACTAAAATA+GGG + chr2_1:37460182-37460201 None:intergenic 15.0%
!! TTATGAATCTAAACTAAAAT+AGG + chr2_1:37460183-37460202 None:intergenic 15.0%
!!! TTTTTGTTTTTATGAAATAG+CGG + chr2_1:37460440-37460459 None:intergenic 15.0%
!! AAACAAAAACAACAAAAATA+AGG - chr2_1:37460451-37460470 Msa0207040:intron 15.0%
!! TTGTTAAACAAAAAAATAAC+AGG - chr2_1:37460628-37460647 Msa0207040:intron 15.0%
!! TTGGTTTAAAAAAAAAACAA+GGG + chr2_1:37460751-37460770 None:intergenic 15.0%
!! AATCTAGTTAAAGATTAATA+AGG + chr2_1:37462721-37462740 None:intergenic 15.0%
!! ATAAACAAGTATTAAGAAAA+CGG + chr2_1:37464946-37464965 None:intergenic 15.0%
!!! CTTATTAACCCTTTATTTTA+TGG - chr2_1:37460100-37460119 Msa0207040:CDS 20.0%
!! TAATCTAGCCATAAAATAAA+GGG + chr2_1:37460111-37460130 None:intergenic 20.0%
!! ATAATCTAGCCATAAAATAA+AGG + chr2_1:37460112-37460131 None:intergenic 20.0%
!! ATGAATCTAAACTAAAATAG+GGG + chr2_1:37460181-37460200 None:intergenic 20.0%
!! AAACACAAAAAACAACAATA+GGG + chr2_1:37460273-37460292 None:intergenic 20.0%
!! AAAACACAAAAAACAACAAT+AGG + chr2_1:37460274-37460293 None:intergenic 20.0%
!! CTTGGTTTAAAAAAAAAACA+AGG + chr2_1:37460752-37460771 None:intergenic 20.0%
!!! CTTGTTTTTTTTTTAAACCA+AGG - chr2_1:37460750-37460769 Msa0207040:intron 20.0%
!! TTTCTCTTAAAATGAAATAG+CGG - chr2_1:37460785-37460804 Msa0207040:intron 20.0%
!! TTGTTGCGTATTATTTAATT+GGG - chr2_1:37460880-37460899 Msa0207040:intron 20.0%
!! TATTGCTATGTTGAATAAAA+TGG - chr2_1:37460936-37460955 Msa0207040:intron 20.0%
!!! TTTTACCAAGTTATACTTAT+GGG - chr2_1:37461602-37461621 Msa0207040:intron 20.0%
!!! ATATATAAGGTTTTAAGTAG+AGG + chr2_1:37461739-37461758 None:intergenic 20.0%
!! AAATTGAAATTCATTTCAGT+TGG + chr2_1:37462242-37462261 None:intergenic 20.0%
!! TTATTTAATGTGAAGTAACT+AGG + chr2_1:37462402-37462421 None:intergenic 20.0%
!!! ATAGAACCTTATTTCTATTA+AGG - chr2_1:37462517-37462536 Msa0207040:intron 20.0%
!! ATATGACCTTAATAGAAATA+AGG + chr2_1:37462526-37462545 None:intergenic 20.0%
!! AAAGCAATAGGATTATTTAT+GGG - chr2_1:37462600-37462619 Msa0207040:intron 20.0%
!!! ATCATAGGTTTTATGTAATT+AGG - chr2_1:37462810-37462829 Msa0207040:CDS 20.0%
!!! TGTTTTTTAATCTAGTTTTC+TGG - chr2_1:37463124-37463143 Msa0207040:intron 20.0%
!!! GTTTTTTAATCTAGTTTTCT+GGG - chr2_1:37463125-37463144 Msa0207040:intron 20.0%
!!! AAAATTTCTTGTTACCATTT+TGG - chr2_1:37463382-37463401 Msa0207040:intron 20.0%
!!! ATGAAAGATTTTGAAATGAT+TGG - chr2_1:37463413-37463432 Msa0207040:intron 20.0%
!!! GATTTTGATGTAATACTTTA+TGG - chr2_1:37463611-37463630 Msa0207040:intron 20.0%
!! CTAAAAAATTGAAAAGAGAA+GGG - chr2_1:37463803-37463822 Msa0207040:intron 20.0%
!! TAAAAAATTGAAAAGAGAAG+GGG - chr2_1:37463804-37463823 Msa0207040:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG - chr2_1:37464259-37464278 Msa0207040:intron 20.0%
!! TAAACAAGTATTAAGAAAAC+GGG + chr2_1:37464945-37464964 None:intergenic 20.0%
!!! GTTTTCTTAATACTTGTTTA+TGG - chr2_1:37464945-37464964 Msa0207040:five_prime_UTR 20.0%
!!! TTTTTTTAAATCACCACTAT+TGG + chr2_1:37465099-37465118 None:intergenic 20.0%
!!! GATTTGAATATGATTTTTGG+GGG + chr2_1:37459809-37459828 None:intergenic 25.0%
!! GGATTTGAATATGATTTTTG+GGG + chr2_1:37459810-37459829 None:intergenic 25.0%
!! GGGATTTGAATATGATTTTT+GGG + chr2_1:37459811-37459830 None:intergenic 25.0%
!! AGGGATTTGAATATGATTTT+TGG + chr2_1:37459812-37459831 None:intergenic 25.0%
!! TGCTGAAATGATCAATTTTA+AGG - chr2_1:37460133-37460152 Msa0207040:CDS 25.0%
! TGAATCTAAACTAAAATAGG+GGG + chr2_1:37460180-37460199 None:intergenic 25.0%
! GATTCATAATCTTGAAATCA+AGG - chr2_1:37460194-37460213 Msa0207040:intron 25.0%
! TAATCTTGAAATCAAGGAAT+CGG - chr2_1:37460200-37460219 Msa0207040:intron 25.0%
! AACTAGAACAAAAAAGTAAC+AGG - chr2_1:37460588-37460607 Msa0207040:intron 25.0%
! AGAAAATACAAAATTGTCCT+TGG + chr2_1:37460770-37460789 None:intergenic 25.0%
! CTTGTTGCGTATTATTTAAT+TGG - chr2_1:37460879-37460898 Msa0207040:intron 25.0%
! TATGTTGAATAAAATGGTGT+GGG - chr2_1:37460942-37460961 Msa0207040:intron 25.0%
! TCTACAAATTACTATACTTC+AGG + chr2_1:37461018-37461037 None:intergenic 25.0%
!! TGAAGTATAGTAATTTGTAG+AGG - chr2_1:37461017-37461036 Msa0207040:intron 25.0%
! AAATGAGACACAAATAAATG+GGG + chr2_1:37461061-37461080 None:intergenic 25.0%
! CAAATGAGACACAAATAAAT+GGG + chr2_1:37461062-37461081 None:intergenic 25.0%
! ACAAATGAGACACAAATAAA+TGG + chr2_1:37461063-37461082 None:intergenic 25.0%
! AATTTAATAAGACTCTGTGT+TGG - chr2_1:37461132-37461151 Msa0207040:intron 25.0%
! TTGTATATTTCCTTTCAACT+TGG + chr2_1:37461184-37461203 None:intergenic 25.0%
! TAAAGAATGTATAAGATGTG+TGG - chr2_1:37461421-37461440 Msa0207040:intron 25.0%
!! ATGTTTGATGACAATGTTTA+TGG - chr2_1:37461467-37461486 Msa0207040:intron 25.0%
!! CTTTTACCAAGTTATACTTA+TGG - chr2_1:37461601-37461620 Msa0207040:intron 25.0%
!!! TCATTGTAAATTTTGATCCA+TGG - chr2_1:37461984-37462003 Msa0207040:intron 25.0%
!!! CATTGTAAATTTTGATCCAT+GGG - chr2_1:37461985-37462004 Msa0207040:intron 25.0%
! AAGAGATCACAAAAAGTAAA+AGG + chr2_1:37462208-37462227 None:intergenic 25.0%
!!! GAATTTCAATTTTGAAGACA+TGG - chr2_1:37462250-37462269 Msa0207040:intron 25.0%
! CAAAGCAATAGGATTATTTA+TGG - chr2_1:37462599-37462618 Msa0207040:intron 25.0%
! GTAAGGCAACAATAAATTAT+TGG + chr2_1:37462679-37462698 None:intergenic 25.0%
!!! CTAGATTGCAATTTGATTTT+CGG - chr2_1:37462734-37462753 Msa0207040:intron 25.0%
! TTACATAAAACCTATGATAC+AGG + chr2_1:37462808-37462827 None:intergenic 25.0%
! TTCGATCTGCAATATAAATA+TGG + chr2_1:37462924-37462943 None:intergenic 25.0%
!!! GTTTTAAAAGATAGCAATGT+AGG - chr2_1:37463093-37463112 Msa0207040:intron 25.0%
!! TCATAAGACTGATAATTTTC+AGG + chr2_1:37463208-37463227 None:intergenic 25.0%
! TTTCATATTACTTGCCAAAA+TGG + chr2_1:37463399-37463418 None:intergenic 25.0%
!! TTCAAATTTCTAGATTTCCA+TGG + chr2_1:37463761-37463780 None:intergenic 25.0%
!!! TTCAATTTTTTAGGTTTGCA+TGG + chr2_1:37463796-37463815 None:intergenic 25.0%
!! CCTTCTCTTTTCAATTTTTT+AGG + chr2_1:37463805-37463824 None:intergenic 25.0%
! CCTAAAAAATTGAAAAGAGA+AGG - chr2_1:37463802-37463821 Msa0207040:intron 25.0%
!! AGAATCATTTGGTTAGTTAT+GGG - chr2_1:37463967-37463986 Msa0207040:intron 25.0%
! TTATTATCAGTAAAGCTACA+AGG + chr2_1:37464093-37464112 None:intergenic 25.0%
! TTACTGATAATAACTACAGT+TGG - chr2_1:37464100-37464119 Msa0207040:intron 25.0%
!! GTTTCACTTATAGTTTTTCT+AGG + chr2_1:37464218-37464237 None:intergenic 25.0%
! AGATCTAGAGATTAATGATT+TGG - chr2_1:37464247-37464266 Msa0207040:intron 25.0%
!! TGGTATTTGATAGAACATTT+TGG - chr2_1:37464279-37464298 Msa0207040:intron 25.0%
!! TAATATGGTTTTTCATGGAA+AGG + chr2_1:37464385-37464404 None:intergenic 25.0%
! AAAAAAGACAGCATGATTTA+TGG + chr2_1:37464478-37464497 None:intergenic 25.0%
! AAACAAAATGTCATTGTAGA+TGG + chr2_1:37464546-37464565 None:intergenic 25.0%
! ACTTGTAACATATGAAGTAA+AGG + chr2_1:37464782-37464801 None:intergenic 25.0%
!!! AGAAGGTGATGGTTTTTTTA+GGG + chr2_1:37459831-37459850 None:intergenic 30.0%
!!! AAGAAGGTGATGGTTTTTTT+AGG + chr2_1:37459832-37459851 None:intergenic 30.0%
! TCTGAATTGAAATTGAGTTG+CGG + chr2_1:37459886-37459905 None:intergenic 30.0%
CAATTTCAATTCAGAACAAG+CGG - chr2_1:37459891-37459910 Msa0207040:three_prime_UTR 30.0%
CTTTGCATAGTAGTTAATAG+CGG - chr2_1:37460353-37460372 Msa0207040:intron 30.0%
! GTTTTATACGAACAAAACAG+AGG - chr2_1:37460495-37460514 Msa0207040:intron 30.0%
TTGCGTATTATTTAATTGGG+AGG - chr2_1:37460883-37460902 Msa0207040:intron 30.0%
TGCGTATTATTTAATTGGGA+GGG - chr2_1:37460884-37460903 Msa0207040:intron 30.0%
TTATTTAATTGGGAGGGTTA+AGG - chr2_1:37460890-37460909 Msa0207040:intron 30.0%
CTATGTTGAATAAAATGGTG+TGG - chr2_1:37460941-37460960 Msa0207040:intron 30.0%
ATCTGAATTTGACCAAACAA+TGG - chr2_1:37460971-37460990 Msa0207040:intron 30.0%
TCTGAATTTGACCAAACAAT+GGG - chr2_1:37460972-37460991 Msa0207040:intron 30.0%
TAGAGGCTAGATGTATTAAA+GGG - chr2_1:37461034-37461053 Msa0207040:intron 30.0%
!! TTTGTGTCTCATTTGTTATG+CGG - chr2_1:37461067-37461086 Msa0207040:intron 30.0%
! TAAATAGGTACCAAGTTGAA+AGG - chr2_1:37461171-37461190 Msa0207040:intron 30.0%
! ACTTTATTGTCAAAGAGCAT+TGG - chr2_1:37461265-37461284 Msa0207040:intron 30.0%
GTGGTTACTCATAAGAAAAT+TGG - chr2_1:37461287-37461306 Msa0207040:intron 30.0%
! AAATTGGTGCATCTTTTAAG+AGG - chr2_1:37461303-37461322 Msa0207040:intron 30.0%
! TATATGACCTCCCAATATTT+TGG - chr2_1:37461349-37461368 Msa0207040:intron 30.0%
! ATATGACCTCCCAATATTTT+GGG - chr2_1:37461350-37461369 Msa0207040:intron 30.0%
! AATTTTCAATCACCCAAATG+TGG + chr2_1:37461392-37461411 None:intergenic 30.0%
TGTATAAGATGTGTGGTTTA+TGG - chr2_1:37461428-37461447 Msa0207040:intron 30.0%
!! AGACACATTTTGATATGTTG+GGG + chr2_1:37461576-37461595 None:intergenic 30.0%
!! CAGACACATTTTGATATGTT+GGG + chr2_1:37461577-37461596 None:intergenic 30.0%
!! ACAGACACATTTTGATATGT+TGG + chr2_1:37461578-37461597 None:intergenic 30.0%
ATAGTCCCATAAGTATAACT+TGG + chr2_1:37461610-37461629 None:intergenic 30.0%
TTCCATCACTTTATCTAATG+AGG - chr2_1:37461836-37461855 Msa0207040:intron 30.0%
AACCTCATTAGATAAAGTGA+TGG + chr2_1:37461841-37461860 None:intergenic 30.0%
AGATTCAAAACGAAGAATCT+CGG + chr2_1:37462124-37462143 None:intergenic 30.0%
! ATGTGTTTTTCTCCTTTTAC+AGG - chr2_1:37462422-37462441 Msa0207040:CDS 30.0%
AATGTTATCTCGCAAATTAG+AGG + chr2_1:37462765-37462784 None:intergenic 30.0%
TATGATACAGGTAGAAACTA+AGG + chr2_1:37462796-37462815 None:intergenic 30.0%
TTAGTTTCTACCTGTATCAT+AGG - chr2_1:37462795-37462814 Msa0207040:CDS 30.0%
! TCCAAAGTTCTTGAGTTTTT+CGG + chr2_1:37462964-37462983 None:intergenic 30.0%
! ATGAGAAACTTTTCACTGAA+AGG - chr2_1:37462999-37463018 Msa0207040:intron 30.0%
! AAACTTTTCACTGAAAGGTA+AGG - chr2_1:37463004-37463023 Msa0207040:intron 30.0%
! AGCTATCTTTTACAACACAT+TGG + chr2_1:37463034-37463053 None:intergenic 30.0%
CCAAAAAGGACAACTAATAA+TGG + chr2_1:37463274-37463293 None:intergenic 30.0%
! CCATTATTAGTTGTCCTTTT+TGG - chr2_1:37463271-37463290 Msa0207040:intron 30.0%
CATTTAGCATCATCCTAATT+TGG + chr2_1:37463592-37463611 None:intergenic 30.0%
GATGTAATACTTTATGGTGA+TGG - chr2_1:37463617-37463636 Msa0207040:intron 30.0%
TCAAAATTAAGCACAACCAA+AGG + chr2_1:37463683-37463702 None:intergenic 30.0%
! GAATGTAAAAGTGACTTTTG+AGG + chr2_1:37463723-37463742 None:intergenic 30.0%
TCAGAATCTTTCATTAACCA+TGG - chr2_1:37463741-37463760 Msa0207040:intron 30.0%
AGATTGTTCATTTGTGTGAT+GGG - chr2_1:37463901-37463920 Msa0207040:intron 30.0%
! GAGAATCATTTGGTTAGTTA+TGG - chr2_1:37463966-37463985 Msa0207040:intron 30.0%
AAGCAGTAATATAGTTCGTT+AGG + chr2_1:37464036-37464055 None:intergenic 30.0%
! CTCTCTAATATGGTTTTTCA+TGG + chr2_1:37464390-37464409 None:intergenic 30.0%
CATGAAAAACCATATTAGAG+AGG - chr2_1:37464388-37464407 Msa0207040:intron 30.0%
AACACAAATGGAAAAAACCA+GGG + chr2_1:37464419-37464438 None:intergenic 30.0%
AAACACAAATGGAAAAAACC+AGG + chr2_1:37464420-37464439 None:intergenic 30.0%
! TTTTCTCTCTTGCTAATTGA+AGG - chr2_1:37464437-37464456 Msa0207040:intron 30.0%
TATGTTATGTGTTTGACACT+AGG - chr2_1:37464499-37464518 Msa0207040:intron 30.0%
AGAAGTAAAGAATATCTCAC+AGG - chr2_1:37464613-37464632 Msa0207040:intron 30.0%
GCCAGCATAATCAAATTAAA+CGG + chr2_1:37464727-37464746 None:intergenic 30.0%
!! TTTAATTTGATTATGCTGGC+AGG - chr2_1:37464727-37464746 Msa0207040:intron 30.0%
CAAGTGAACAATGTTGATAT+TGG - chr2_1:37464846-37464865 Msa0207040:intron 30.0%
CAAGTAACAATAGCAATAGA+AGG + chr2_1:37464893-37464912 None:intergenic 30.0%
TCAAGGAATCGGAAATTTCA+TGG - chr2_1:37460211-37460230 Msa0207040:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG - chr2_1:37460360-37460379 Msa0207040:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG + chr2_1:37460401-37460420 None:intergenic 35.0%
! TTTAAGATGCACCCATTGTT+TGG + chr2_1:37460986-37461005 None:intergenic 35.0%
GTAGAGGCTAGATGTATTAA+AGG - chr2_1:37461033-37461052 Msa0207040:intron 35.0%
!! TTGTGTCTCATTTGTTATGC+GGG - chr2_1:37461068-37461087 Msa0207040:intron 35.0%
! GATGTTGGCTAGAGTTAAAT+AGG - chr2_1:37461156-37461175 Msa0207040:intron 35.0%
!! TTATTGTCAAAGAGCATTGG+TGG - chr2_1:37461268-37461287 Msa0207040:intron 35.0%
TAACACGGTAGAGTTAAACA+TGG + chr2_1:37461496-37461515 None:intergenic 35.0%
!! ATTTTGATATGTTGGGGTAC+CGG + chr2_1:37461570-37461589 None:intergenic 35.0%
TATCAATGCAGATTCAGTCA+CGG - chr2_1:37461652-37461671 Msa0207040:intron 35.0%
! TTCTCTCCTTAACTCTTTTC+AGG - chr2_1:37461887-37461906 Msa0207040:intron 35.0%
AATGAAAAGAACCAAGAGCA+TGG + chr2_1:37461916-37461935 None:intergenic 35.0%
AACATCAGTGGTTGAAATCA+AGG + chr2_1:37462061-37462080 None:intergenic 35.0%
ATTCAAAACGAAGAATCTCG+GGG + chr2_1:37462122-37462141 None:intergenic 35.0%
GATTCAAAACGAAGAATCTC+GGG + chr2_1:37462123-37462142 None:intergenic 35.0%
CAAAGGACAGATTGAATTGA+TGG - chr2_1:37462161-37462180 Msa0207040:intron 35.0%
GTAACCTTTCATTGATGCTT+TGG - chr2_1:37462369-37462388 Msa0207040:CDS 35.0%
! GCTTTTACACTCAAAGCAAT+AGG - chr2_1:37462588-37462607 Msa0207040:intron 35.0%
TTACCCTCAAGTATTAACAG+CGG - chr2_1:37462695-37462714 Msa0207040:intron 35.0%
TCTAGTGAATACACAGCAAT+AGG + chr2_1:37462878-37462897 None:intergenic 35.0%
ATTGCTGTGTATTCACTAGA+TGG - chr2_1:37462878-37462897 Msa0207040:CDS 35.0%
TCCGAAAAACTCAAGAACTT+TGG - chr2_1:37462960-37462979 Msa0207040:five_prime_UTR 35.0%
!! AACTTTGGAACAGACTTTCT+AGG - chr2_1:37462975-37462994 Msa0207040:five_prime_UTR 35.0%
!! ACTTTGGAACAGACTTTCTA+GGG - chr2_1:37462976-37462995 Msa0207040:five_prime_UTR 35.0%
ACAATCTGTCATTAGTGAAG+AGG - chr2_1:37463231-37463250 Msa0207040:intron 35.0%
ATTAGTGAAGAGGATGACAT+GGG - chr2_1:37463241-37463260 Msa0207040:intron 35.0%
TTAAAGTGCATGAATCCCTT+AGG - chr2_1:37463548-37463567 Msa0207040:intron 35.0%
CATCCTTCCATTACCAAATT+AGG - chr2_1:37463576-37463595 Msa0207040:intron 35.0%
!! CATCCTAATTTGGTAATGGA+AGG + chr2_1:37463582-37463601 None:intergenic 35.0%
GCATCATCCTAATTTGGTAA+TGG + chr2_1:37463586-37463605 None:intergenic 35.0%
AAGGTCATTAAGTGCTTACA+GGG + chr2_1:37463664-37463683 None:intergenic 35.0%
AAAGGTCATTAAGTGCTTAC+AGG + chr2_1:37463665-37463684 None:intergenic 35.0%
TGTAAGCACTTAATGACCTT+TGG - chr2_1:37463664-37463683 Msa0207040:intron 35.0%
GAGATTGTTCATTTGTGTGA+TGG - chr2_1:37463900-37463919 Msa0207040:intron 35.0%
!! GTGATGGGTTCTGTTATATT+TGG - chr2_1:37463916-37463935 Msa0207040:intron 35.0%
TTTGGATCTGAAGAAGATAG+TGG - chr2_1:37463934-37463953 Msa0207040:intron 35.0%
TTGGATCTGAAGAAGATAGT+GGG - chr2_1:37463935-37463954 Msa0207040:intron 35.0%
!! AAGAAGATAGTGGGATATCT+TGG - chr2_1:37463944-37463963 Msa0207040:intron 35.0%
GGATATCTTGGAGAATCATT+TGG - chr2_1:37463956-37463975 Msa0207040:intron 35.0%
AGCAAGAGAGAAAACACAAA+TGG + chr2_1:37464431-37464450 None:intergenic 35.0%
TCTCTTGCTAATTGAAGGTT+TGG - chr2_1:37464442-37464461 Msa0207040:intron 35.0%
AAAACAAACGTGTCTAGTTG+GGG + chr2_1:37464589-37464608 None:intergenic 35.0%
CAAAACAAACGTGTCTAGTT+GGG + chr2_1:37464590-37464609 None:intergenic 35.0%
ACAAAACAAACGTGTCTAGT+TGG + chr2_1:37464591-37464610 None:intergenic 35.0%
ACAGGAATTCAACTTGAAGA+TGG - chr2_1:37464631-37464650 Msa0207040:intron 35.0%
!! GCCGTTTAATTTGATTATGC+TGG - chr2_1:37464723-37464742 Msa0207040:intron 35.0%
CATATGAAGTAAAGGACATC+AGG + chr2_1:37464774-37464793 None:intergenic 35.0%
ATAAAACCACTTGTAGAGAG+TGG - chr2_1:37464804-37464823 Msa0207040:intron 35.0%
TAAAACCACTTGTAGAGAGT+GGG - chr2_1:37464805-37464824 Msa0207040:intron 35.0%
CAATGTTGATATTGGTGCAA+TGG - chr2_1:37464854-37464873 Msa0207040:intron 35.0%
GTTGATCCAAAATGTCAAAC+TGG - chr2_1:37464969-37464988 Msa0207040:five_prime_UTR 35.0%
! ATGCTTCCAGTTTGACATTT+TGG + chr2_1:37464978-37464997 None:intergenic 35.0%
AGCATTGTGATTTATTCCGT+AGG - chr2_1:37464993-37465012 Msa0207040:five_prime_UTR 35.0%
TTGAATCAGGAAAACACCTA+CGG + chr2_1:37465012-37465031 None:intergenic 35.0%
TGACAACAAGTACTTGAATC+AGG + chr2_1:37465025-37465044 None:intergenic 35.0%
! ATCCCGCTATAGCATTTTTG+GGG + chr2_1:37460400-37460419 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG + chr2_1:37460402-37460421 None:intergenic 40.0%
GAGCAAACACAACAAAGTAG+AGG - chr2_1:37460657-37460676 Msa0207040:intron 40.0%
TAGAGGAAGATTTACAGCAG+AGG - chr2_1:37460674-37460693 Msa0207040:intron 40.0%
!! TCATTTGTTATGCGGGTTTC+TGG - chr2_1:37461075-37461094 Msa0207040:intron 40.0%
ATCTTGCCCAAAATATTGGG+AGG + chr2_1:37461359-37461378 None:intergenic 40.0%
CGGATCTTGCCCAAAATATT+GGG + chr2_1:37461362-37461381 None:intergenic 40.0%
!! TCTCCTTAACTCTTTTCAGG+TGG - chr2_1:37461890-37461909 Msa0207040:intron 40.0%
ATCCATGGGTTCAAGATCTA+CGG - chr2_1:37461999-37462018 Msa0207040:intron 40.0%
TTCAAAACGAAGAATCTCGG+GGG + chr2_1:37462121-37462140 None:intergenic 40.0%
ATTCAATCTGTCCTTTGACG+CGG + chr2_1:37462158-37462177 None:intergenic 40.0%
ACCTTTCATTGATGCTTTGG+TGG - chr2_1:37462372-37462391 Msa0207040:CDS 40.0%
! ACCACCAAAGCATCAATGAA+AGG + chr2_1:37462376-37462395 None:intergenic 40.0%
CCACAGTTTCTTCCTGTAAA+AGG + chr2_1:37462437-37462456 None:intergenic 40.0%
! CCTTTTACAGGAAGAAACTG+TGG - chr2_1:37462434-37462453 Msa0207040:CDS 40.0%
TTTACAGGAAGAAACTGTGG+AGG - chr2_1:37462437-37462456 Msa0207040:CDS 40.0%
GATACAGAGATACCGAAAGA+GGG + chr2_1:37462485-37462504 None:intergenic 40.0%
TGATACAGAGATACCGAAAG+AGG + chr2_1:37462486-37462505 None:intergenic 40.0%
TTCGGTATCTCTGTATCAGA+TGG - chr2_1:37462488-37462507 Msa0207040:intron 40.0%
TCCTGAAGGTAATCAGTCAT+AGG - chr2_1:37462559-37462578 Msa0207040:intron 40.0%
GCTGTTAATACTTGAGGGTA+AGG + chr2_1:37462696-37462715 None:intergenic 40.0%
GATACAGGTAGAAACTAAGG+TGG + chr2_1:37462793-37462812 None:intergenic 40.0%
!! GTTCTTGAGTTTTTCGGATG+TGG + chr2_1:37462958-37462977 None:intergenic 40.0%
AGATAGCAATGTAGGCTACT+TGG - chr2_1:37463101-37463120 Msa0207040:intron 40.0%
!!! TAATCTAGTTTTCTGGGTGC+AGG - chr2_1:37463131-37463150 Msa0207040:intron 40.0%
CATTAGTGAAGAGGATGACA+TGG - chr2_1:37463240-37463259 Msa0207040:intron 40.0%
AGTCCTAGACAGACACAAAA+TGG + chr2_1:37463316-37463335 None:intergenic 40.0%
! CATGTGCTAACTGCACATTT+TGG + chr2_1:37463847-37463866 None:intergenic 40.0%
TCTCTGAATAAGCTTAGCAC+TGG - chr2_1:37464004-37464023 Msa0207040:intron 40.0%
CTCTGAATAAGCTTAGCACT+GGG - chr2_1:37464005-37464024 Msa0207040:intron 40.0%
ACTATATTACTGCTTGCGAC+TGG - chr2_1:37464041-37464060 Msa0207040:intron 40.0%
TCATGTAAAGAGAAGACCTG+TGG - chr2_1:37464130-37464149 Msa0207040:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr2_1:37464160-37464179 Msa0207040:intron 40.0%
AGTCAAATCACTAGAGGTAG+AGG - chr2_1:37464188-37464207 Msa0207040:intron 40.0%
GTAGATGGTTCGTTTATGTC+AGG + chr2_1:37464531-37464550 None:intergenic 40.0%
! ATTTTCCCACTCTCTACAAG+TGG + chr2_1:37464813-37464832 None:intergenic 40.0%
CGAGCAATATTAGCCAATAG+TGG - chr2_1:37465083-37465102 Msa0207040:five_prime_UTR 40.0%
AGAAGAGTGACCAAGAGAGT+GGG + chr2_1:37459963-37459982 None:intergenic 45.0%
CATCTCTCTCGCATTCATTC+AGG - chr2_1:37460003-37460022 Msa0207040:three_prime_UTR 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG + chr2_1:37460396-37460415 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG - chr2_1:37460394-37460413 Msa0207040:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG - chr2_1:37460395-37460414 Msa0207040:intron 45.0%
CAGAAACAGAGAGAGCAGAA+TGG - chr2_1:37460539-37460558 Msa0207040:intron 45.0%
AGAGAGAGCAGAATGGAGTT+TGG - chr2_1:37460546-37460565 Msa0207040:intron 45.0%
ACAGAACAGCAGAAAAGCAG+AGG - chr2_1:37460709-37460728 Msa0207040:intron 45.0%
GGGAGGGTTAAGGTGTATAA+AGG - chr2_1:37460900-37460919 Msa0207040:intron 45.0%
AGACTCTGTGTTGGAGATGT+TGG - chr2_1:37461141-37461160 Msa0207040:intron 45.0%
GCGGATCTTGCCCAAAATAT+TGG + chr2_1:37461363-37461382 None:intergenic 45.0%
AATCACCCAAATGTGGTCAG+TGG + chr2_1:37461385-37461404 None:intergenic 45.0%
GCGCACTCAACTACATAACA+CGG + chr2_1:37461511-37461530 None:intergenic 45.0%
GTCAGAATGATGTTCGACAG+CGG + chr2_1:37461806-37461825 None:intergenic 45.0%
TGGCCACCTGAAAAGAGTTA+AGG + chr2_1:37461896-37461915 None:intergenic 45.0%
TTCCGTAGATCTTGAACCCA+TGG + chr2_1:37462004-37462023 None:intergenic 45.0%
ATGGGTTCAAGATCTACGGA+AGG - chr2_1:37462003-37462022 Msa0207040:intron 45.0%
CTTGAGAAGCTCAACATCAG+TGG + chr2_1:37462073-37462092 None:intergenic 45.0%
GATTTGATCAACCGCGTCAA+AGG - chr2_1:37462144-37462163 Msa0207040:intron 45.0%
GTGGAGGAGAAATTGTCTGT+TGG - chr2_1:37462453-37462472 Msa0207040:CDS 45.0%
!! TGTTGGTAGTGACCCTCTTT+CGG - chr2_1:37462470-37462489 Msa0207040:intron 45.0%
GACTGATTACCTTCAGGATG+CGG + chr2_1:37462557-37462576 None:intergenic 45.0%
GCCTATGACTGATTACCTTC+AGG + chr2_1:37462563-37462582 None:intergenic 45.0%
AGGCCGCTGTTAATACTTGA+GGG + chr2_1:37462701-37462720 None:intergenic 45.0%
AAGGCCGCTGTTAATACTTG+AGG + chr2_1:37462702-37462721 None:intergenic 45.0%
TGCTCTCTAGATGTTCCTTC+AGG + chr2_1:37463168-37463187 None:intergenic 45.0%
! GGACCATTTTGTGTCTGTCT+AGG - chr2_1:37463310-37463329 Msa0207040:intron 45.0%
! TTGTGTCTGTCTAGGACTGT+AGG - chr2_1:37463318-37463337 Msa0207040:intron 45.0%
TGGAAGGATGAACAGCCTAA+GGG + chr2_1:37463566-37463585 None:intergenic 45.0%
ATGGAAGGATGAACAGCCTA+AGG + chr2_1:37463567-37463586 None:intergenic 45.0%
! TTTTGGCCCACACTCTCATT+TGG + chr2_1:37463830-37463849 None:intergenic 45.0%
! GCCACATCACTGTAGGTTTT+CGG + chr2_1:37463875-37463894 None:intergenic 45.0%
GACCTGTGGATTCTGTAGTA+AGG - chr2_1:37464144-37464163 Msa0207040:intron 45.0%
CTCCTTACTACAGAATCCAC+AGG + chr2_1:37464149-37464168 None:intergenic 45.0%
AAGGAGAGTAGATCAGATGG+AGG - chr2_1:37464163-37464182 Msa0207040:intron 45.0%
AGGAGAGTAGATCAGATGGA+GGG - chr2_1:37464164-37464183 Msa0207040:intron 45.0%
CTAAGCCTTAACCCACTAAG+CGG + chr2_1:37464330-37464349 None:intergenic 45.0%
AGGGAGAAGCCTCTCTAATA+TGG + chr2_1:37464400-37464419 None:intergenic 45.0%
ATATTAGAGAGGCTTCTCCC+TGG - chr2_1:37464399-37464418 Msa0207040:intron 45.0%
GATAATTGCCTGTCGTCAAC+AGG + chr2_1:37464658-37464677 None:intergenic 45.0%
CAGCAGAGCAAATTCATGCA+AGG + chr2_1:37464685-37464704 None:intergenic 45.0%
!!! TTATTTTAATACAATATATA+AGG + chr2_1:37461752-37461771 None:intergenic 5.0%
TGAGGGTGAGAGACGAAAGT+GGG + chr2_1:37459939-37459958 None:intergenic 50.0%
GAAGAGTGACCAAGAGAGTG+GGG + chr2_1:37459962-37459981 None:intergenic 50.0%
GAGAAGAGTGACCAAGAGAG+TGG + chr2_1:37459964-37459983 None:intergenic 50.0%
TATCTCACACCGCAACGCTA+TGG - chr2_1:37460856-37460875 Msa0207040:intron 50.0%
ATCCGCCACTGACCACATTT+GGG - chr2_1:37461377-37461396 Msa0207040:intron 50.0%
GCACTAAGTGCCAAGAAGCT+GGG - chr2_1:37461529-37461548 Msa0207040:intron 50.0%
GCCAAGAAGCTGGGAATTGT+CGG - chr2_1:37461538-37461557 Msa0207040:intron 50.0%
ACCGACAATTCCCAGCTTCT+TGG + chr2_1:37461542-37461561 None:intergenic 50.0%
!! TGGGAATTGTCGGTTCGAAC+CGG - chr2_1:37461548-37461567 Msa0207040:intron 50.0%
!!! TTTTCAGGTGGCCATGCTCT+TGG - chr2_1:37461902-37461921 Msa0207040:intron 50.0%
TTGAGCTTCTCAAGCGAGCA+TGG - chr2_1:37462079-37462098 Msa0207040:intron 50.0%
! AAGGGGCCAAATGAGAGTGT+GGG - chr2_1:37463821-37463840 Msa0207040:intron 50.0%
GCCGAAAACCTACAGTGATG+TGG - chr2_1:37463871-37463890 Msa0207040:intron 50.0%
GGAGAGTAGATCAGATGGAG+GGG - chr2_1:37464165-37464184 Msa0207040:intron 50.0%
GAGGGGAGTCAAATCACTAG+AGG - chr2_1:37464182-37464201 Msa0207040:intron 50.0%
ACTAAGCGGAGTTGGCTACA+TGG + chr2_1:37464316-37464335 None:intergenic 50.0%
ATGTAGCCAACTCCGCTTAG+TGG - chr2_1:37464315-37464334 Msa0207040:intron 50.0%
TGTAGCCAACTCCGCTTAGT+GGG - chr2_1:37464316-37464335 Msa0207040:intron 50.0%
CTTAACCCACTAAGCGGAGT+TGG + chr2_1:37464324-37464343 None:intergenic 50.0%
!! CAACTCCGCTTAGTGGGTTA+AGG - chr2_1:37464322-37464341 Msa0207040:intron 50.0%
AAGATGGACCTGTTGACGAC+AGG - chr2_1:37464647-37464666 Msa0207040:intron 50.0%
CAGGTCGAAGCTGTTTGAGA+TGG - chr2_1:37464746-37464765 Msa0207040:intron 50.0%
ACTGTGTTGCGAGATGTGCG+CGG + chr2_1:37459860-37459879 None:intergenic 55.0%
! GTGGGGGGTGCAATTAACAG+TGG + chr2_1:37459921-37459940 None:intergenic 55.0%
AGGGTGAGAGACGAAAGTGG+GGG + chr2_1:37459937-37459956 None:intergenic 55.0%
GAGGGTGAGAGACGAAAGTG+GGG + chr2_1:37459938-37459957 None:intergenic 55.0%
GTGAGGGTGAGAGACGAAAG+TGG + chr2_1:37459940-37459959 None:intergenic 55.0%
TGACCAAGAGAGTGGGGTGA+GGG + chr2_1:37459956-37459975 None:intergenic 55.0%
! GTGAGATAGCGGCGCTATAG+CGG + chr2_1:37460844-37460863 None:intergenic 55.0%
AGCGTTGCGGTGTGAGATAG+CGG + chr2_1:37460855-37460874 None:intergenic 55.0%
CGCAACAAGCCATAGCGTTG+CGG + chr2_1:37460868-37460887 None:intergenic 55.0%
GATCCGCCACTGACCACATT+TGG - chr2_1:37461376-37461395 Msa0207040:intron 55.0%
CACCCAAATGTGGTCAGTGG+CGG + chr2_1:37461382-37461401 None:intergenic 55.0%
CGCACTAAGTGCCAAGAAGC+TGG - chr2_1:37461528-37461547 Msa0207040:intron 55.0%
AGATTCAGTCACGGACGCGT+TGG - chr2_1:37461661-37461680 Msa0207040:intron 55.0%
TTACGTCGCAGTCCAGACTG+TGG - chr2_1:37461706-37461725 Msa0207040:CDS 55.0%
AGAGGTTCGTGACCACAGTC+TGG + chr2_1:37461721-37461740 None:intergenic 55.0%
GCGAGCATGGCGTAACGAAA+AGG - chr2_1:37462092-37462111 Msa0207040:intron 55.0%
TCTTCGCATCCGCATCCTGA+AGG - chr2_1:37462545-37462564 Msa0207040:intron 55.0%
CAGGTGCACAGATGACCTGA+AGG - chr2_1:37463150-37463169 Msa0207040:intron 55.0%
GAAGGGGCCAAATGAGAGTG+TGG - chr2_1:37463820-37463839 Msa0207040:intron 55.0%
TCACGCTGCCACATCACTGT+AGG + chr2_1:37463882-37463901 None:intergenic 55.0%
AACGTGTCTAGTTGGGGTGC+TGG + chr2_1:37464583-37464602 None:intergenic 55.0%
CGCGGGAGAGAAGAAGGTGA+TGG + chr2_1:37459842-37459861 None:intergenic 60.0%
GATGTGCGCGGGAGAGAAGA+AGG + chr2_1:37459848-37459867 None:intergenic 60.0%
CTGTGTTGCGAGATGTGCGC+GGG + chr2_1:37459859-37459878 None:intergenic 60.0%
GGGTGAGAGACGAAAGTGGG+GGG + chr2_1:37459936-37459955 None:intergenic 60.0%
TCACCCTCACCCCACTCTCT+TGG - chr2_1:37459950-37459969 Msa0207040:three_prime_UTR 60.0%
GTGACCAAGAGAGTGGGGTG+AGG + chr2_1:37459957-37459976 None:intergenic 60.0%
! ATGCTGCTGCTGGTGCTGGA+AGG + chr2_1:37459986-37460005 None:intergenic 60.0%
AGAGATGCTGCTGCTGGTGC+TGG + chr2_1:37459990-37460009 None:intergenic 60.0%
TGCGAGAGAGATGCTGCTGC+TGG + chr2_1:37459996-37460015 None:intergenic 60.0%
! TAGCGGATAGCGGCGCGTAG+CGG - chr2_1:37460370-37460389 Msa0207040:intron 65.0%
AGCGGCGCAACGCTTCGCAG+CGG + chr2_1:37460826-37460845 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 37459799 37465127 37459799 ID=Msa0207040;Name=Msa0207040
chr2_1 mRNA 37459799 37465127 37459799 ID=Msa0207040-mRNA-1;Parent=Msa0207040;Name=Msa0207040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=320|1|1|1|0.83|0.71|7|282|227
chr2_1 exon 37459799 37460177 37459799 ID=Msa0207040-mRNA-1:exon:12121;Parent=Msa0207040-mRNA-1
chr2_1 exon 37460258 37460348 37460258 ID=Msa0207040-mRNA-1:exon:12120;Parent=Msa0207040-mRNA-1
chr2_1 exon 37461664 37461773 37461664 ID=Msa0207040-mRNA-1:exon:12119;Parent=Msa0207040-mRNA-1
chr2_1 exon 37461906 37461988 37461906 ID=Msa0207040-mRNA-1:exon:12118;Parent=Msa0207040-mRNA-1
chr2_1 exon 37462360 37462482 37462360 ID=Msa0207040-mRNA-1:exon:12117;Parent=Msa0207040-mRNA-1
chr2_1 exon 37462744 37463017 37462744 ID=Msa0207040-mRNA-1:exon:12116;Parent=Msa0207040-mRNA-1
chr2_1 exon 37464902 37465127 37464902 ID=Msa0207040-mRNA-1:exon:12115;Parent=Msa0207040-mRNA-1
chr2_1 five_prime_UTR 37464902 37465127 37464902 ID=Msa0207040-mRNA-1:five_prime_utr;Parent=Msa0207040-mRNA-1
chr2_1 five_prime_UTR 37462924 37463017 37462924 ID=Msa0207040-mRNA-1:five_prime_utr;Parent=Msa0207040-mRNA-1
chr2_1 CDS 37462744 37462923 37462744 ID=Msa0207040-mRNA-1:cds;Parent=Msa0207040-mRNA-1
chr2_1 CDS 37462360 37462482 37462360 ID=Msa0207040-mRNA-1:cds;Parent=Msa0207040-mRNA-1
chr2_1 CDS 37461906 37461988 37461906 ID=Msa0207040-mRNA-1:cds;Parent=Msa0207040-mRNA-1
chr2_1 CDS 37461664 37461773 37461664 ID=Msa0207040-mRNA-1:cds;Parent=Msa0207040-mRNA-1
chr2_1 CDS 37460258 37460348 37460258 ID=Msa0207040-mRNA-1:cds;Parent=Msa0207040-mRNA-1
chr2_1 CDS 37460081 37460177 37460081 ID=Msa0207040-mRNA-1:cds;Parent=Msa0207040-mRNA-1
chr2_1 three_prime_UTR 37459799 37460080 37459799 ID=Msa0207040-mRNA-1:three_prime_utr;Parent=Msa0207040-mRNA-1
Gene Sequence

>Msa0207040

ATGGGTTCAAGATCTACGGAAGGAGAACAATCATCGCTCGCTGACAATTATGATGCCTTGATTTCAACCACTGATGTTGAGCTTCTCAAGCGAGCATGGCGTAACGAAAAGGCAGCCCCCGAGATTCTTCGTTTTGAATCTGATTTGATCAACCGCGTCAAAGGACAGATTGAATTGATGGAAGAAACTGTGGAGGAGAAATTGTCTGTTGGTAGTGACCCTCTTTCGGTATCTCTGTATCAGATGGACTTAGATAGAACCTTATTTCTATTAAGGTCATATCTTCGCATCCGCATCCTGAAGATCGAAAAGTACATGTTCCACATCCGAAAAACTCAAGAACTTTGGAACAGACTTTCTAGGGATGAGAAACTTTTCACTGAAAGGTGCACAGATGACCTGAAGGAACATCTAGAGAGCAGTGTTCTATCAAAACTACCTGAAAATTATCAGTCTTATGAGAGACAATCTGTCATTAGTGAAGAGGATGACATGGTTCCAGCACCCCAACTAGACACGTTTGTTTTGTGTAGAAGTAAAGAATATCTCACAGGAATTCAACTTGAAGATGGACCTGTTGACGACAGGTCGAAGCTGTTTGAGATGGAGCCTGATGTCCTTTACTTCATATGTTACAAGTCGATAAAACCACTTGTAGAGAGTGGGAAAATTGATCTACTATGA

Protein sequence

>Msa0207040

MGSRSTEGEQSSLADNYDALISTTDVELLKRAWRNEKAAPEILRFESDLINRVKGQIELMEETVEEKLSVGSDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTQELWNRLSRDEKLFTERCTDDLKEHLESSVLSKLPENYQSYERQSVISEEDDMVPAPQLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL*