Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173810 | XP_003591301.1 | 98.416 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1017 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173810 | sp|Q9M115|ZDH16_ARATH | 63.230 | 514 | 170 | 9 | 2 | 505 | 4 | 508 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173810 | G7IBQ1 | 98.416 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1017 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0173810 | 0.818022 | 2.434515e-52 | -8.615850e-47 |
| Msa0027280 | Msa0173810 | 0.801679 | 8.036701e-49 | -8.615850e-47 |
| Msa0028420 | Msa0173810 | 0.812234 | 4.698093e-51 | -8.615850e-47 |
| Msa0030370 | Msa0173810 | 0.956195 | 5.226841e-114 | -8.615850e-47 |
| Msa0048510 | Msa0173810 | 0.837835 | 4.110179e-57 | -8.615850e-47 |
| Msa0049760 | Msa0173810 | 0.819762 | 9.795837e-53 | -8.615850e-47 |
| Msa0052480 | Msa0173810 | 0.819116 | 1.374762e-52 | -8.615850e-47 |
| Msa0054690 | Msa0173810 | 0.823113 | 1.649965e-53 | -8.615850e-47 |
| Msa0081570 | Msa0173810 | 0.942819 | 3.651065e-102 | -8.615850e-47 |
| Msa0094780 | Msa0173810 | 0.825124 | 5.561110e-54 | -8.615850e-47 |
| Msa0097670 | Msa0173810 | 0.804939 | 1.697901e-49 | -8.615850e-47 |
| Msa0097890 | Msa0173810 | 0.810184 | 1.307605e-50 | -8.615850e-47 |
| Msa0123070 | Msa0173810 | 0.808704 | 2.716992e-50 | -8.615850e-47 |
| Msa0136650 | Msa0173810 | 0.804565 | 2.031948e-49 | -8.615850e-47 |
| Msa0140280 | Msa0173810 | 0.805768 | 1.137855e-49 | -8.615850e-47 |
| Msa0173730 | Msa0173810 | 0.964989 | 5.007941e-124 | -8.615850e-47 |
| Msa0173810 | Msa0174450 | 0.806404 | 8.364231e-50 | -8.615850e-47 |
| Msa0173810 | Msa0182190 | 0.800823 | 1.202954e-48 | -8.615850e-47 |
| Msa0173810 | Msa0190110 | 0.805860 | 1.088659e-49 | -8.615850e-47 |
| Msa0173810 | Msa0190570 | 0.845105 | 4.997364e-59 | -8.615850e-47 |
| Msa0173810 | Msa0200050 | 0.822664 | 2.099263e-53 | -8.615850e-47 |
| Msa0173810 | Msa0213030 | 0.805866 | 1.085564e-49 | -8.615850e-47 |
| Msa0173810 | Msa0221000 | 0.800057 | 1.722978e-48 | -8.615850e-47 |
| Msa0173810 | Msa0222560 | 0.803129 | 4.040086e-49 | -8.615850e-47 |
| Msa0173810 | Msa0225860 | 0.843893 | 1.058895e-58 | -8.615850e-47 |
| Msa0173810 | Msa0242590 | 0.835661 | 1.473911e-56 | -8.615850e-47 |
| Msa0173810 | Msa0260510 | 0.840040 | 1.104802e-57 | -8.615850e-47 |
| Msa0173810 | Msa0271880 | 0.803213 | 3.880059e-49 | -8.615850e-47 |
| Msa0173810 | Msa0280790 | 0.823281 | 1.507378e-53 | -8.615850e-47 |
| Msa0173810 | Msa0298470 | 0.850203 | 1.976722e-60 | -8.615850e-47 |
| Msa0173810 | Msa0310850 | 0.810369 | 1.192793e-50 | -8.615850e-47 |
| Msa0173810 | Msa0330380 | 0.819510 | 1.118358e-52 | -8.615850e-47 |
| Msa0173810 | Msa0337700 | 0.800719 | 1.263208e-48 | -8.615850e-47 |
| Msa0173810 | Msa0340500 | 0.858588 | 7.431029e-63 | -8.615850e-47 |
| Msa0173810 | Msa0369790 | 0.807003 | 6.250206e-50 | -8.615850e-47 |
| Msa0173810 | Msa0371030 | 0.804767 | 1.844363e-49 | -8.615850e-47 |
| Msa0173810 | Msa0380670 | 0.802880 | 4.547617e-49 | -8.615850e-47 |
| Msa0173810 | Msa0390970 | 0.816057 | 6.730076e-52 | -8.615850e-47 |
| Msa0173810 | Msa0428370 | 0.802260 | 6.102969e-49 | -8.615850e-47 |
| Msa0173810 | Msa0430260 | 0.805806 | 1.117372e-49 | -8.615850e-47 |
| Msa0173810 | Msa0430300 | 0.806534 | 7.851907e-50 | -8.615850e-47 |
| Msa0173810 | Msa0464000 | 0.805173 | 1.517085e-49 | -8.615850e-47 |
| Msa0173810 | Msa0481890 | 0.835399 | 1.716209e-56 | -8.615850e-47 |
| Msa0173810 | Msa0483100 | 0.813816 | 2.113627e-51 | -8.615850e-47 |
| Msa0173810 | Msa0509550 | 0.808200 | 3.481046e-50 | -8.615850e-47 |
| Msa0173810 | Msa0530780 | 0.822667 | 2.095427e-53 | -8.615850e-47 |
| Msa0173810 | Msa0567170 | 0.862420 | 5.131349e-64 | -8.615850e-47 |
| Msa0173810 | Msa0580370 | 0.853031 | 3.126836e-61 | -8.615850e-47 |
| Msa0173810 | Msa0583830 | 0.801642 | 8.175965e-49 | -8.615850e-47 |
| Msa0173810 | Msa0624900 | 0.841679 | 4.104634e-58 | -8.615850e-47 |
| Msa0173810 | Msa0626450 | 0.800849 | 1.188065e-48 | -8.615850e-47 |
| Msa0173810 | Msa0658640 | 0.871847 | 5.000086e-67 | -8.615850e-47 |
| Msa0173810 | Msa0661150 | 0.819145 | 1.353999e-52 | -8.615850e-47 |
| Msa0173810 | Msa0664600 | 0.800359 | 1.495605e-48 | -8.615850e-47 |
| Msa0173810 | Msa0666700 | 0.830658 | 2.593844e-55 | -8.615850e-47 |
| Msa0173810 | Msa0703600 | 0.849164 | 3.855684e-60 | -8.615850e-47 |
| Msa0173810 | Msa0709200 | 0.851701 | 7.476095e-61 | -8.615850e-47 |
| Msa0173810 | Msa0709440 | 0.834730 | 2.531274e-56 | -8.615850e-47 |
| Msa0173810 | Msa0721080 | 0.803387 | 3.572693e-49 | -8.615850e-47 |
| Msa0173810 | Msa0735780 | 0.837188 | 6.023523e-57 | -8.615850e-47 |
| Msa0173810 | Msa0761670 | 0.809945 | 1.471951e-50 | -8.615850e-47 |
| Msa0173810 | Msa0773630 | 0.813715 | 2.224420e-51 | -8.615850e-47 |
| Msa0173810 | Msa0777750 | 0.825595 | 4.301807e-54 | -8.615850e-47 |
| Msa0173810 | Msa0795870 | 0.852692 | 3.906293e-61 | -8.615850e-47 |
| Msa0173810 | Msa0815920 | 0.820015 | 8.575389e-53 | -8.615850e-47 |
| Msa0173810 | Msa0824450 | 0.843545 | 1.312039e-58 | -8.615850e-47 |
| Msa0173810 | Msa0830130 | 0.805119 | 1.557183e-49 | -8.615850e-47 |
| Msa0173810 | Msa0830460 | 0.807700 | 4.447462e-50 | -8.615850e-47 |
| Msa0173810 | Msa0833650 | 0.852087 | 5.810678e-61 | -8.615850e-47 |
| Msa0173810 | Msa0842070 | 0.800478 | 1.414721e-48 | -8.615850e-47 |
| Msa0173810 | Msa0855230 | 0.816926 | 4.299365e-52 | -8.615850e-47 |
| Msa0173810 | Msa0861600 | 0.800455 | 1.429819e-48 | -8.615850e-47 |
| Msa0173810 | Msa0966320 | 0.800176 | 1.629337e-48 | -8.615850e-47 |
| Msa0173810 | Msa0981320 | 0.818873 | 1.561811e-52 | -8.615850e-47 |
| Msa0173810 | Msa0997920 | 0.830217 | 3.326099e-55 | -8.615850e-47 |
| Msa0173810 | Msa1042160 | 0.801301 | 9.604621e-49 | -8.615850e-47 |
| Msa0173810 | Msa1042190 | 0.806179 | 9.328325e-50 | -8.615850e-47 |
| Msa0173810 | Msa1081390 | 0.808674 | 2.758053e-50 | -8.615850e-47 |
| Msa0173810 | Msa1084530 | 0.832143 | 1.118489e-55 | -8.615850e-47 |
| Msa0173810 | Msa1116220 | 0.810374 | 1.190041e-50 | -8.615850e-47 |
| Msa0173810 | Msa1125820 | 0.831969 | 1.234945e-55 | -8.615850e-47 |
| Msa0173810 | Msa1125990 | 0.835800 | 1.358723e-56 | -8.615850e-47 |
| Msa0173810 | Msa1132530 | 0.824387 | 8.298377e-54 | -8.615850e-47 |
| Msa0173810 | Msa1132840 | 0.852195 | 5.413284e-61 | -8.615850e-47 |
| Msa0173810 | Msa1162590 | 0.804331 | 2.274441e-49 | -8.615850e-47 |
| Msa0173810 | Msa1171290 | 0.829997 | 3.762712e-55 | -8.615850e-47 |
| Msa0173810 | Msa1177320 | 0.808634 | 2.812356e-50 | -8.615850e-47 |
| Msa0173810 | Msa1192570 | 0.830511 | 2.818960e-55 | -8.615850e-47 |
| Msa0173810 | Msa1200890 | 0.827928 | 1.193161e-54 | -8.615850e-47 |
| Msa0173810 | Msa1208950 | 0.809085 | 2.252469e-50 | -8.615850e-47 |
| Msa0173810 | Msa1215870 | 0.831335 | 1.769929e-55 | -8.615850e-47 |
| Msa0173810 | Msa1226520 | 0.866400 | 2.930687e-65 | -8.615850e-47 |
| Msa0173810 | Msa1307630 | 0.807145 | 5.831161e-50 | -8.615850e-47 |
| Msa0173810 | Msa1320670 | 0.809880 | 1.520662e-50 | -8.615850e-47 |
| Msa0173810 | Msa1343170 | 0.831709 | 1.431591e-55 | -8.615850e-47 |
| Msa0173810 | Msa1343180 | 0.846835 | 1.691958e-59 | -8.615850e-47 |
| Msa0173810 | Msa1359690 | 0.834176 | 3.487608e-56 | -8.615850e-47 |
| Msa0173810 | Msa1397400 | 0.853774 | 1.913710e-61 | -8.615850e-47 |
| Msa0173810 | Msa1420950 | 0.846228 | 2.478423e-59 | -8.615850e-47 |
| Msa0173810 | Msa1440880 | 0.803664 | 3.129720e-49 | -8.615850e-47 |
| Msa0173810 | Msa1440960 | 0.800073 | 1.709920e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173810 | MtrunA17_Chr1g0193941 | 98.416 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1017 |
| Msa0173810 | MtrunA17_Chr3g0144181 | 34.937 | 395 | 235 | 7 | 2 | 393 | 3 | 378 | 8.17e-69 | 232 |
| Msa0173810 | MtrunA17_Chr4g0038841 | 37.346 | 324 | 175 | 5 | 1 | 298 | 2 | 323 | 2.02e-67 | 230 |
| Msa0173810 | MtrunA17_Chr4g0042821 | 27.883 | 581 | 311 | 12 | 1 | 488 | 1 | 566 | 2.13e-62 | 214 |
| Msa0173810 | MtrunA17_Chr5g0418141 | 31.368 | 475 | 246 | 13 | 1 | 421 | 1 | 449 | 4.56e-57 | 200 |
| Msa0173810 | MtrunA17_Chr6g0462021 | 27.228 | 202 | 121 | 5 | 155 | 344 | 149 | 336 | 1.91e-14 | 75.5 |
| Msa0173810 | MtrunA17_Chr4g0064931 | 40.909 | 88 | 46 | 2 | 139 | 220 | 353 | 440 | 4.19e-14 | 75.1 |
| Msa0173810 | MtrunA17_Chr7g0273371 | 28.070 | 228 | 139 | 7 | 114 | 328 | 127 | 342 | 2.57e-13 | 71.6 |
| Msa0173810 | MtrunA17_Chr6g0464751 | 30.075 | 133 | 83 | 3 | 155 | 287 | 138 | 260 | 3.52e-12 | 68.2 |
| Msa0173810 | MtrunA17_Chr1g0201631 | 30.075 | 133 | 84 | 3 | 155 | 287 | 135 | 258 | 3.69e-12 | 68.2 |
| Msa0173810 | MtrunA17_Chr4g0009911 | 26.816 | 179 | 100 | 5 | 141 | 305 | 87 | 248 | 5.55e-12 | 66.6 |
| Msa0173810 | MtrunA17_Chr3g0131931 | 28.571 | 133 | 85 | 3 | 155 | 287 | 150 | 272 | 5.63e-12 | 67.8 |
| Msa0173810 | MtrunA17_Chr4g0049351 | 39.796 | 98 | 51 | 4 | 157 | 251 | 363 | 455 | 6.45e-12 | 67.8 |
| Msa0173810 | MtrunA17_Chr7g0255151 | 27.068 | 133 | 81 | 2 | 155 | 287 | 162 | 278 | 2.00e-11 | 66.2 |
| Msa0173810 | MtrunA17_Chr7g0251761 | 29.545 | 132 | 81 | 3 | 157 | 287 | 151 | 271 | 2.63e-11 | 65.5 |
| Msa0173810 | MtrunA17_Chr1g0199411 | 33.824 | 136 | 70 | 5 | 169 | 303 | 108 | 224 | 4.46e-11 | 63.5 |
| Msa0173810 | MtrunA17_Chr5g0406311 | 42.373 | 59 | 34 | 0 | 158 | 216 | 170 | 228 | 5.65e-11 | 63.9 |
| Msa0173810 | MtrunA17_Chr1g0211241 | 45.000 | 60 | 33 | 0 | 157 | 216 | 462 | 521 | 6.90e-11 | 64.7 |
| Msa0173810 | MtrunA17_Chr7g0255161 | 27.407 | 135 | 89 | 2 | 155 | 287 | 89 | 216 | 7.22e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173810 | AT4G01730.1 | 63.230 | 514 | 170 | 9 | 2 | 505 | 4 | 508 | 0.0 | 543 |
| Msa0173810 | AT2G33640.1 | 34.750 | 400 | 209 | 9 | 2 | 370 | 3 | 381 | 3.83e-71 | 237 |
| Msa0173810 | AT3G22180.1 | 36.170 | 329 | 179 | 5 | 1 | 306 | 2 | 322 | 4.60e-65 | 224 |
| Msa0173810 | AT4G15080.2 | 31.743 | 482 | 253 | 11 | 1 | 425 | 2 | 464 | 1.78e-64 | 222 |
| Msa0173810 | AT4G15080.1 | 31.743 | 482 | 253 | 11 | 1 | 425 | 2 | 464 | 1.78e-64 | 222 |
| Msa0173810 | AT1G69420.1 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.16e-61 | 212 |
| Msa0173810 | AT1G69420.2 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.16e-61 | 212 |
| Msa0173810 | AT3G26935.1 | 32.090 | 134 | 79 | 3 | 155 | 287 | 148 | 270 | 1.54e-15 | 79.3 |
| Msa0173810 | AT3G48760.1 | 27.228 | 202 | 128 | 5 | 155 | 348 | 157 | 347 | 6.20e-15 | 77.4 |
| Msa0173810 | AT5G20350.1 | 36.154 | 130 | 74 | 4 | 92 | 221 | 316 | 436 | 1.05e-13 | 74.3 |
| Msa0173810 | AT5G41060.3 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.57e-13 | 71.6 |
| Msa0173810 | AT5G41060.4 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.57e-13 | 71.6 |
| Msa0173810 | AT3G04970.3 | 42.105 | 76 | 39 | 2 | 153 | 224 | 66 | 140 | 2.73e-13 | 71.2 |
| Msa0173810 | AT2G14255.1 | 43.836 | 73 | 41 | 0 | 148 | 220 | 355 | 427 | 2.82e-13 | 72.8 |
| Msa0173810 | AT5G41060.1 | 29.851 | 134 | 82 | 3 | 155 | 287 | 146 | 268 | 4.52e-13 | 71.6 |
| Msa0173810 | AT3G56930.1 | 28.148 | 135 | 83 | 3 | 155 | 287 | 145 | 267 | 4.77e-13 | 71.6 |
| Msa0173810 | AT4G24630.1 | 30.075 | 133 | 83 | 3 | 155 | 287 | 135 | 257 | 5.58e-13 | 71.2 |
| Msa0173810 | AT5G41060.2 | 29.851 | 134 | 82 | 3 | 155 | 287 | 131 | 253 | 5.76e-13 | 70.9 |
| Msa0173810 | AT3G04970.2 | 43.836 | 73 | 36 | 2 | 153 | 221 | 153 | 224 | 6.18e-13 | 70.1 |
| Msa0173810 | AT3G04970.1 | 42.105 | 76 | 39 | 2 | 153 | 224 | 153 | 227 | 7.68e-13 | 70.5 |
| Msa0173810 | AT5G50020.3 | 30.075 | 133 | 83 | 4 | 155 | 287 | 135 | 257 | 1.85e-12 | 69.7 |
| Msa0173810 | AT5G50020.2 | 30.075 | 133 | 83 | 4 | 155 | 287 | 165 | 287 | 2.24e-12 | 69.3 |
| Msa0173810 | AT5G04270.1 | 29.921 | 127 | 75 | 3 | 169 | 295 | 105 | 217 | 2.58e-12 | 67.8 |
| Msa0173810 | AT3G09320.1 | 29.677 | 155 | 95 | 4 | 141 | 293 | 80 | 222 | 6.76e-12 | 66.6 |
| Msa0173810 | AT4G22750.1 | 26.291 | 213 | 135 | 5 | 85 | 285 | 33 | 235 | 1.97e-11 | 65.5 |
| Msa0173810 | AT5G05070.1 | 27.820 | 133 | 82 | 3 | 155 | 287 | 170 | 288 | 6.48e-11 | 64.7 |
Find 116 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGACTTGAAAGCCTTAA+TGG | 0.179701 | 1_4:-59170907 | None:intergenic |
| CCCCTTTGATCAACACAAAA+AGG | 0.201505 | 1_4:+59170647 | Msa0173810:CDS |
| ATGTATAAATTTGATTTATA+AGG | 0.203769 | 1_4:-59171199 | None:intergenic |
| CTTAACTATGGATTCATTAT+TGG | 0.227661 | 1_4:+59169159 | Msa0173810:CDS |
| AGAGAACTACCTTTCGTATT+AGG | 0.235966 | 1_4:-59170152 | None:intergenic |
| CCTGCAGAAAATCTTCTTCT+TGG | 0.247950 | 1_4:-59170925 | None:intergenic |
| GCAATTCCTAAGCTTAACTA+TGG | 0.264138 | 1_4:+59169147 | Msa0173810:CDS |
| TTTCTTCTTCTTCTTGAAAC+TGG | 0.265760 | 1_4:-59169109 | None:intergenic |
| AATATTGGCAATGAGGGATT+TGG | 0.269143 | 1_4:+59170844 | Msa0173810:CDS |
| CATGGGGATTTATAGTTTCC+TGG | 0.270284 | 1_4:+59167901 | Msa0173810:CDS |
| ACGTCCTCTTCATCCTTTAC+AGG | 0.290395 | 1_4:+59167780 | Msa0173810:CDS |
| AACTTCATGTATCACCATTA+AGG | 0.298327 | 1_4:+59170893 | Msa0173810:CDS |
| CTTAGGAATTGCATTCCTTT+TGG | 0.301238 | 1_4:-59169136 | None:intergenic |
| AGTGGTTGAATAACTGTATT+GGG | 0.305251 | 1_4:+59169657 | Msa0173810:intron |
| GCATTGCCTCTGAAAATTAC+AGG | 0.312239 | 1_4:-59171292 | None:intergenic |
| AATTACCATGAAGGAAAATA+TGG | 0.329971 | 1_4:-59167990 | None:intergenic |
| CTGCAATTGCGATATTTATC+AGG | 0.330793 | 1_4:+59169865 | Msa0173810:CDS |
| TTCATAATAGTAACAACGTT+TGG | 0.332999 | 1_4:-59171349 | None:intergenic |
| CAGTGGTTGAATAACTGTAT+TGG | 0.338312 | 1_4:+59169656 | Msa0173810:intron |
| AAATACAATGCCTACGATCT+TGG | 0.340037 | 1_4:-59171108 | None:intergenic |
| AATACAATGCCTACGATCTT+GGG | 0.349348 | 1_4:-59171107 | None:intergenic |
| AATGAGAACTAACCATTAAC+AGG | 0.349646 | 1_4:-59169721 | None:intergenic |
| AGAGAATGAAGCCATGGAAT+TGG | 0.360067 | 1_4:+59170400 | Msa0173810:CDS |
| GCTTATAGTTCAGCTGCATT+GGG | 0.362020 | 1_4:+59170105 | Msa0173810:CDS |
| AGCTTATAGTTCAGCTGCAT+TGG | 0.379994 | 1_4:+59170104 | Msa0173810:CDS |
| AAGGGTTTGATCACCATTGC+AGG | 0.380383 | 1_4:+59169543 | Msa0173810:CDS |
| CTGAAAATTACAGGTCCATT+TGG | 0.392432 | 1_4:-59171283 | None:intergenic |
| TTGAAAATGTGACAGTTTGT+AGG | 0.405221 | 1_4:+59167878 | Msa0173810:intron |
| GAATAGAAAAGGAGCTTCAT+AGG | 0.409924 | 1_4:+59169907 | Msa0173810:CDS |
| TCTTTCATAACAAATGGAAA+TGG | 0.412686 | 1_4:-59169294 | None:intergenic |
| ATATTGGCAATGAGGGATTT+GGG | 0.413742 | 1_4:+59170845 | Msa0173810:CDS |
| AGCTTGAAACACATATTTCC+AGG | 0.415244 | 1_4:+59171040 | Msa0173810:CDS |
| TCATCATCTTTCATAACAAA+TGG | 0.417582 | 1_4:-59169300 | None:intergenic |
| TCAGGTGCTTTGTGGATAAG+AGG | 0.417899 | 1_4:+59169883 | Msa0173810:CDS |
| AATGAACTGTGCTCCCTCAT+TGG | 0.434720 | 1_4:-59170769 | None:intergenic |
| ATGTCGTCCTCTTTAAGATC+AGG | 0.449853 | 1_4:-59169336 | None:intergenic |
| GTGTGTTTCTATACTTTCCT+CGG | 0.453785 | 1_4:+59167926 | Msa0173810:CDS |
| GAGGACCTATGACTATATTC+TGG | 0.454122 | 1_4:+59170367 | Msa0173810:CDS |
| CTTTCATAACAAATGGAAAT+GGG | 0.456489 | 1_4:-59169293 | None:intergenic |
| TCAGATGACTATTACACATA+TGG | 0.457257 | 1_4:-59169967 | None:intergenic |
| ATGAATCCATAGTTAAGCTT+AGG | 0.465933 | 1_4:-59169153 | None:intergenic |
| TTGAAACTGGTTCTGTCTGT+AGG | 0.467295 | 1_4:-59169096 | None:intergenic |
| TGTTCAGTTATCAGCAAAGA+TGG | 0.472599 | 1_4:+59171072 | Msa0173810:CDS |
| GATATTTATCAGGTGCTTTG+TGG | 0.473980 | 1_4:+59169875 | Msa0173810:CDS |
| TTTCTGTTTACTTTAAACAT+AGG | 0.477009 | 1_4:+59171250 | Msa0173810:three_prime_UTR |
| TTATAAATCAAATTTATACA+TGG | 0.477535 | 1_4:+59171201 | Msa0173810:three_prime_UTR |
| TTCATTAAGACCTCTTCCAT+TGG | 0.478810 | 1_4:+59170786 | Msa0173810:CDS |
| AAATTACAGGTCCATTTGGC+TGG | 0.479592 | 1_4:-59171279 | None:intergenic |
| TGAAGTTAGCAGGTGTGTCT+AGG | 0.480378 | 1_4:+59171016 | Msa0173810:CDS |
| ATAGGATAATTCCAGCCAAA+TGG | 0.480414 | 1_4:+59171268 | Msa0173810:three_prime_UTR |
| AAAATCCTTGACATTAGTGT+TGG | 0.485995 | 1_4:-59170485 | None:intergenic |
| AACTGAACATAGAACCTGCC+TGG | 0.487655 | 1_4:-59171058 | None:intergenic |
| TTCACGTAAGCATTAACCCT+TGG | 0.489341 | 1_4:+59170671 | Msa0173810:CDS |
| ACTTGTAATCGTTGCGTTGA+AGG | 0.491089 | 1_4:+59169524 | Msa0173810:CDS |
| ATGTGACAGTTTGTAGGCAT+GGG | 0.494330 | 1_4:+59167884 | Msa0173810:intron |
| TGTGAACAGCTCATCATTGA+AGG | 0.494729 | 1_4:+59169837 | Msa0173810:intron |
| GGGTGGAAAAGAAGTTGCTT+AGG | 0.494730 | 1_4:+59169208 | Msa0173810:CDS |
| CATTGCCAGAATATAGTCAT+AGG | 0.496409 | 1_4:-59170372 | None:intergenic |
| GGATAAGAGGGGAATAGAAA+AGG | 0.502714 | 1_4:+59169896 | Msa0173810:CDS |
| GTCAACTTTACGAGTTTCCA+AGG | 0.513589 | 1_4:-59170688 | None:intergenic |
| GCTCTTTCTCGTCAACTCAA+CGG | 0.513844 | 1_4:-59167685 | None:intergenic |
| TTTGTTTCATAAAGGGGATG+AGG | 0.518890 | 1_4:+59170348 | Msa0173810:intron |
| CTTGTAATCGTTGCGTTGAA+GGG | 0.519111 | 1_4:+59169525 | Msa0173810:CDS |
| ATGGTGGCAAGAAGTCCTCT+TGG | 0.521474 | 1_4:-59169948 | None:intergenic |
| CAGGTGCTTTGTGGATAAGA+GGG | 0.525174 | 1_4:+59169884 | Msa0173810:CDS |
| ACTTTCCTCGGACTCTTCCT+CGG | 0.525401 | 1_4:+59167938 | Msa0173810:CDS |
| TGAAACACATATTTCCAGGC+AGG | 0.526662 | 1_4:+59171044 | Msa0173810:CDS |
| ACGCGGACCATTGACGAATG+TGG | 0.527722 | 1_4:+59170816 | Msa0173810:CDS |
| TGAGTGTTATCTCAGCAGTT+CGG | 0.530480 | 1_4:-59167964 | None:intergenic |
| TACTTGCAGCTGAGAAAGCA+AGG | 0.530537 | 1_4:+59170725 | Msa0173810:CDS |
| GAAGTTAGCAGGTGTGTCTA+GGG | 0.530558 | 1_4:+59171017 | Msa0173810:CDS |
| TATAAATCAAATTTATACAT+GGG | 0.533955 | 1_4:+59171202 | Msa0173810:three_prime_UTR |
| ACTTGTGCACTCGTCTTCAA+CGG | 0.546561 | 1_4:-59169258 | None:intergenic |
| ACAAATGGAAATGGGAGAAG+AGG | 0.548200 | 1_4:-59169285 | None:intergenic |
| CAATGCTGTCATCTGATGAA+AGG | 0.552272 | 1_4:-59170442 | None:intergenic |
| GTTGAAGACGAGTGCACAAG+TGG | 0.554243 | 1_4:+59169260 | Msa0173810:CDS |
| ACACTATGAGACGCCATGGT+TGG | 0.555301 | 1_4:+59167755 | Msa0173810:exon |
| AATGTGACAGTTTGTAGGCA+TGG | 0.560320 | 1_4:+59167883 | Msa0173810:intron |
| ATCAAATGACTCCAATTCCA+TGG | 0.560589 | 1_4:-59170411 | None:intergenic |
| CAGCTGAGAAAGCAAGGGAA+AGG | 0.566987 | 1_4:+59170731 | Msa0173810:CDS |
| GAATAGATAAATTACCATGA+AGG | 0.567650 | 1_4:-59167999 | None:intergenic |
| TTTACCTGTAAAGGATGAAG+AGG | 0.576281 | 1_4:-59167784 | None:intergenic |
| GAGAGAAGAGAATGAAGCCA+TGG | 0.580808 | 1_4:+59170394 | Msa0173810:CDS |
| TGTCGTCCCTGATCTTAAAG+AGG | 0.582192 | 1_4:+59169329 | Msa0173810:CDS |
| TTTGTGTTGATCAAAGGGGA+AGG | 0.592051 | 1_4:-59170643 | None:intergenic |
| CGTGCGAGAAAGACCAATGA+GGG | 0.592418 | 1_4:+59170756 | Msa0173810:CDS |
| AAAAGCCAACACTAATGTCA+AGG | 0.594065 | 1_4:+59170480 | Msa0173810:CDS |
| TCACGTTCTCCTAATACGAA+AGG | 0.596273 | 1_4:+59170143 | Msa0173810:CDS |
| AAGTATAGAAACACACCACC+AGG | 0.598487 | 1_4:-59167919 | None:intergenic |
| AACAGATACTGACCCTGCAA+TGG | 0.599614 | 1_4:-59169556 | None:intergenic |
| AGGGTTTGATCACCATTGCA+GGG | 0.600426 | 1_4:+59169544 | Msa0173810:CDS |
| ATACAATGCCTACGATCTTG+GGG | 0.601194 | 1_4:-59171106 | None:intergenic |
| TGTCGTCCTCTTTAAGATCA+GGG | 0.605943 | 1_4:-59169335 | None:intergenic |
| AATGCCTACGATCTTGGGGA+TGG | 0.606261 | 1_4:-59171102 | None:intergenic |
| ATTCATTATTGGTCAGATTG+TGG | 0.609221 | 1_4:+59169170 | Msa0173810:CDS |
| TTATTGGTCAGATTGTGGTG+AGG | 0.621959 | 1_4:+59169175 | Msa0173810:CDS |
| GAACAGCTCATCATTGAAGG+AGG | 0.626679 | 1_4:+59169840 | Msa0173810:intron |
| AACAGCTCATCATTGAAGGA+GGG | 0.627474 | 1_4:+59169841 | Msa0173810:intron |
| GAAGAGGACGTTGCCAACCA+TGG | 0.631280 | 1_4:-59167768 | None:intergenic |
| GATGACTATTACACATATGG+TGG | 0.631412 | 1_4:-59169964 | None:intergenic |
| TGAACCATCCCCAAGATCGT+AGG | 0.633327 | 1_4:+59171098 | Msa0173810:CDS |
| TGTGACAGTTTGTAGGCATG+GGG | 0.633700 | 1_4:+59167885 | Msa0173810:intron |
| TCTCAGCAGTTCGGTTTCCG+AGG | 0.633761 | 1_4:-59167955 | None:intergenic |
| CTTATAGTTCAGCTGCATTG+GGG | 0.635397 | 1_4:+59170106 | Msa0173810:CDS |
| ACTTGCAGCTGAGAAAGCAA+GGG | 0.638549 | 1_4:+59170726 | Msa0173810:CDS |
| ATAAGGAAACTATGATACAA+TGG | 0.642983 | 1_4:-59171182 | None:intergenic |
| TCAACTTTACGAGTTTCCAA+GGG | 0.643170 | 1_4:-59170687 | None:intergenic |
| ATAGACACTATGAGACGCCA+TGG | 0.643914 | 1_4:+59167751 | Msa0173810:exon |
| GGGGATTTATAGTTTCCTGG+TGG | 0.645721 | 1_4:+59167904 | Msa0173810:CDS |
| TACCATGAAGGAAAATATGG+AGG | 0.648021 | 1_4:-59167987 | None:intergenic |
| GGTTTCCGAGGAAGAGTCCG+AGG | 0.657144 | 1_4:-59167943 | None:intergenic |
| TCGTGCGAGAAAGACCAATG+AGG | 0.674025 | 1_4:+59170755 | Msa0173810:CDS |
| TCAATCTTGATAGACAACCT+AGG | 0.679060 | 1_4:-59170607 | None:intergenic |
| AGGTGCTTTGTGGATAAGAG+GGG | 0.684044 | 1_4:+59169885 | Msa0173810:CDS |
| CTTCCATTGGAGACAAAACG+CGG | 0.706884 | 1_4:+59170799 | Msa0173810:CDS |
| ATGCTGCTAGAGAATACCGA+TGG | 0.739752 | 1_4:-59170952 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAGAAAAAAAAATA+TGG | - | chr1_4:59168067-59168086 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTCTTTCAAAAA+TGG | + | chr1_4:59168068-59168087 | Msa0173810:intron | 10.0% |
| !!! | GATTGATATTTTTTAATTTA+AGG | + | chr1_4:59168875-59168894 | Msa0173810:intron | 10.0% |
| !!! | ATGTATAAATTTGATTTATA+AGG | - | chr1_4:59171202-59171221 | None:intergenic | 10.0% |
| !! | TTATAAATCAAATTTATACA+TGG | + | chr1_4:59171201-59171220 | Msa0173810:three_prime_UTR | 10.0% |
| !! | TATAAATCAAATTTATACAT+GGG | + | chr1_4:59171202-59171221 | Msa0173810:three_prime_UTR | 10.0% |
| !! | AACTAAAATGAAAAATAGAA+AGG | - | chr1_4:59167818-59167837 | None:intergenic | 15.0% |
| !! | AAGATAATTTAAGCAAAAAA+GGG | - | chr1_4:59168641-59168660 | None:intergenic | 15.0% |
| !!! | TTTTTTGCTTAAATTATCTT+CGG | + | chr1_4:59168641-59168660 | Msa0173810:intron | 15.0% |
| !!! | TTACTAAAGAAATATTTTGA+TGG | - | chr1_4:59168754-59168773 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAACTTTATAA+AGG | - | chr1_4:59168848-59168867 | None:intergenic | 15.0% |
| !! | CCTTTATAAAGTTTAAAAAA+TGG | + | chr1_4:59168845-59168864 | Msa0173810:intron | 15.0% |
| !!! | TCGTTTTTTGTTTTTGTTTT+TGG | - | chr1_4:59167714-59167733 | None:intergenic | 20.0% |
| !! | AATGAATTCAATTTAGGTAA+CGG | + | chr1_4:59168271-59168290 | Msa0173810:intron | 20.0% |
| !! | AGATAATTTAAGCAAAAAAG+GGG | - | chr1_4:59168640-59168659 | None:intergenic | 20.0% |
| !! | GAAGATAATTTAAGCAAAAA+AGG | - | chr1_4:59168642-59168661 | None:intergenic | 20.0% |
| !! | AAAATGCTTATTTACTAGTT+TGG | - | chr1_4:59168692-59168711 | None:intergenic | 20.0% |
| !! | ATTGATATTCTTACAATTAC+AGG | - | chr1_4:59168718-59168737 | None:intergenic | 20.0% |
| !! | GTCAATATTATATCGTTTAT+CGG | - | chr1_4:59168788-59168807 | None:intergenic | 20.0% |
| !!! | TATTGACTTAAATAGTCTTT+CGG | + | chr1_4:59168801-59168820 | Msa0173810:intron | 20.0% |
| !!! | ATTTTTTTTAATCTTAAGCG+TGG | + | chr1_4:59169427-59169446 | Msa0173810:intron | 20.0% |
| !! | CAGAATTAATGTTAAATAGA+AGG | - | chr1_4:59170034-59170053 | None:intergenic | 20.0% |
| !!! | TTGTTTGATTTGTTTCATAA+AGG | + | chr1_4:59170340-59170359 | Msa0173810:intron | 20.0% |
| !!! | TGTTTGATTTGTTTCATAAA+GGG | + | chr1_4:59170341-59170360 | Msa0173810:intron | 20.0% |
| !! | TTTCTGTTTACTTTAAACAT+AGG | + | chr1_4:59171250-59171269 | Msa0173810:three_prime_UTR | 20.0% |
| ! | AATTACCATGAAGGAAAATA+TGG | - | chr1_4:59167993-59168012 | None:intergenic | 25.0% |
| ! | GAATAGATAAATTACCATGA+AGG | - | chr1_4:59168002-59168021 | None:intergenic | 25.0% |
| ! | GCAATGAATGAATTCAATTT+AGG | + | chr1_4:59168265-59168284 | Msa0173810:intron | 25.0% |
| ! | AAGTAACATTAATGCTTCAT+TGG | + | chr1_4:59168409-59168428 | Msa0173810:intron | 25.0% |
| !!! | CTAAAGAAATATTTTGATGG+AGG | - | chr1_4:59168751-59168770 | None:intergenic | 25.0% |
| !!! | ATAATTTTGTTGTTTTGCAC+AGG | + | chr1_4:59169029-59169048 | Msa0173810:intron | 25.0% |
| ! | CTTAACTATGGATTCATTAT+TGG | + | chr1_4:59169159-59169178 | Msa0173810:CDS | 25.0% |
| ! | CTTTCATAACAAATGGAAAT+GGG | - | chr1_4:59169296-59169315 | None:intergenic | 25.0% |
| ! | TCTTTCATAACAAATGGAAA+TGG | - | chr1_4:59169297-59169316 | None:intergenic | 25.0% |
| ! | TCATCATCTTTCATAACAAA+TGG | - | chr1_4:59169303-59169322 | None:intergenic | 25.0% |
| !!! | GTTTGATTTGTTTCATAAAG+GGG | + | chr1_4:59170342-59170361 | Msa0173810:intron | 25.0% |
| ! | ACGAATGTGGAAAAAAATAT+TGG | + | chr1_4:59170829-59170848 | Msa0173810:CDS | 25.0% |
| ! | GAAAAAAATATTGGCAATGA+GGG | + | chr1_4:59170838-59170857 | Msa0173810:CDS | 25.0% |
| ! | ATAAGGAAACTATGATACAA+TGG | - | chr1_4:59171185-59171204 | None:intergenic | 25.0% |
| !! | GATGATGTTTTTACCTGTAA+AGG | - | chr1_4:59167796-59167815 | None:intergenic | 30.0% |
| TTGAAAATGTGACAGTTTGT+AGG | + | chr1_4:59167878-59167897 | Msa0173810:intron | 30.0% | |
| TAAACATGAGATTAAGCACA+AGG | + | chr1_4:59168103-59168122 | Msa0173810:intron | 30.0% | |
| ! | TGGTTTGAGTCAATTTTCAT+AGG | - | chr1_4:59168226-59168245 | None:intergenic | 30.0% |
| ATTGAATTCATTCATTGCAC+TGG | - | chr1_4:59168263-59168282 | None:intergenic | 30.0% | |
| !! | AATTTAGGTAACGGAAATGA+GGG | + | chr1_4:59168280-59168299 | Msa0173810:intron | 30.0% |
| TTGAAACGCGACATATAATT+TGG | + | chr1_4:59168434-59168453 | Msa0173810:intron | 30.0% | |
| TGAAACGCGACATATAATTT+GGG | + | chr1_4:59168435-59168454 | Msa0173810:intron | 30.0% | |
| ! | TTCCAAAGCGACATATATTT+TGG | + | chr1_4:59168470-59168489 | Msa0173810:intron | 30.0% |
| ! | TCCAAAGCGACATATATTTT+GGG | + | chr1_4:59168471-59168490 | Msa0173810:intron | 30.0% |
| ! | ATCAACTGTTTTCAGTTTCA+AGG | + | chr1_4:59168590-59168609 | Msa0173810:intron | 30.0% |
| TTGCTTAAATTATCTTCGGT+CGG | + | chr1_4:59168645-59168664 | Msa0173810:intron | 30.0% | |
| !!! | TTTGGAGGCTTTTTCAAAAT+AGG | - | chr1_4:59168674-59168693 | None:intergenic | 30.0% |
| ! | ATGCTTATTTACTAGTTTGG+AGG | - | chr1_4:59168689-59168708 | None:intergenic | 30.0% |
| GACTGAATTGATATTTCTCA+AGG | + | chr1_4:59168898-59168917 | Msa0173810:intron | 30.0% | |
| AATTGTTATCAATGTGTGTC+TGG | + | chr1_4:59168971-59168990 | Msa0173810:intron | 30.0% | |
| !! | CAGTTATGTTTTTGTTTGTG+AGG | + | chr1_4:59169058-59169077 | Msa0173810:CDS | 30.0% |
| TTTCTTCTTCTTCTTGAAAC+TGG | - | chr1_4:59169112-59169131 | None:intergenic | 30.0% | |
| AGAAGAAGAAAAAAGCCAAA+AGG | + | chr1_4:59169121-59169140 | Msa0173810:CDS | 30.0% | |
| ATGAATCCATAGTTAAGCTT+AGG | - | chr1_4:59169156-59169175 | None:intergenic | 30.0% | |
| ATTCATTATTGGTCAGATTG+TGG | + | chr1_4:59169170-59169189 | Msa0173810:CDS | 30.0% | |
| ACTCTGTTTATATGTGAATC+AGG | + | chr1_4:59169475-59169494 | Msa0173810:intron | 30.0% | |
| !!! | TTTTCTTCTCTTGTTTTCAG+TGG | + | chr1_4:59169639-59169658 | Msa0173810:intron | 30.0% |
| AGTGGTTGAATAACTGTATT+GGG | + | chr1_4:59169657-59169676 | Msa0173810:intron | 30.0% | |
| AATGAGAACTAACCATTAAC+AGG | - | chr1_4:59169724-59169743 | None:intergenic | 30.0% | |
| TCAGATGACTATTACACATA+TGG | - | chr1_4:59169970-59169989 | None:intergenic | 30.0% | |
| ATAGTCATCTGAATTGTTTC+TGG | + | chr1_4:59169978-59169997 | Msa0173810:intron | 30.0% | |
| ! | TAGTCATCTGAATTGTTTCT+GGG | + | chr1_4:59169979-59169998 | Msa0173810:intron | 30.0% |
| ATAGAAGGTTCAAAAGTCAA+GGG | - | chr1_4:59170019-59170038 | None:intergenic | 30.0% | |
| AATAGAAGGTTCAAAAGTCA+AGG | - | chr1_4:59170020-59170039 | None:intergenic | 30.0% | |
| AAAATCCTTGACATTAGTGT+TGG | - | chr1_4:59170488-59170507 | None:intergenic | 30.0% | |
| ! | ATGTCAAGGATTTTATGCAA+AGG | + | chr1_4:59170494-59170513 | Msa0173810:CDS | 30.0% |
| !! | ACCTTTTTGTGTTGATCAAA+GGG | - | chr1_4:59170651-59170670 | None:intergenic | 30.0% |
| !! | AACCTTTTTGTGTTGATCAA+AGG | - | chr1_4:59170652-59170671 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCACATTCGTCAA+TGG | - | chr1_4:59170826-59170845 | None:intergenic | 30.0% |
| GGAAAAAAATATTGGCAATG+AGG | + | chr1_4:59170837-59170856 | Msa0173810:CDS | 30.0% | |
| ! | TCAACACCTTTTATAGCAAA+AGG | + | chr1_4:59170868-59170887 | Msa0173810:CDS | 30.0% |
| ! | CAACACCTTTTATAGCAAAA+GGG | + | chr1_4:59170869-59170888 | Msa0173810:CDS | 30.0% |
| ! | AACACCTTTTATAGCAAAAG+GGG | + | chr1_4:59170870-59170889 | Msa0173810:CDS | 30.0% |
| AACTTCATGTATCACCATTA+AGG | + | chr1_4:59170893-59170912 | Msa0173810:CDS | 30.0% | |
| !!! | CTGCTTCTATATTTGTTTTG+TGG | - | chr1_4:59170988-59171007 | None:intergenic | 30.0% |
| TTTACCTGTAAAGGATGAAG+AGG | - | chr1_4:59167787-59167806 | None:intergenic | 35.0% | |
| ! | GTGTGTTTCTATACTTTCCT+CGG | + | chr1_4:59167926-59167945 | Msa0173810:CDS | 35.0% |
| TACCATGAAGGAAAATATGG+AGG | - | chr1_4:59167990-59168009 | None:intergenic | 35.0% | |
| AAACACAGTGTACCTTTGAT+CGG | - | chr1_4:59168190-59168209 | None:intergenic | 35.0% | |
| CACTGGATTGTACTTTGAAT+TGG | - | chr1_4:59168246-59168265 | None:intergenic | 35.0% | |
| !! | CAATTTAGGTAACGGAAATG+AGG | + | chr1_4:59168279-59168298 | Msa0173810:intron | 35.0% |
| !! | ATTTAGGTAACGGAAATGAG+GGG | + | chr1_4:59168281-59168300 | Msa0173810:intron | 35.0% |
| ! | TCCCAAAATATATGTCGCTT+TGG | - | chr1_4:59168475-59168494 | None:intergenic | 35.0% |
| !! | AAGCGACATATATTTTGGGA+CGG | + | chr1_4:59168475-59168494 | Msa0173810:intron | 35.0% |
| !! | AGTTGTTATGCTGGTTTAGA+GGG | - | chr1_4:59168544-59168563 | None:intergenic | 35.0% |
| !! | AAGTTGTTATGCTGGTTTAG+AGG | - | chr1_4:59168545-59168564 | None:intergenic | 35.0% |
| ! | AGCATCTTAAGTTGTTATGC+TGG | - | chr1_4:59168553-59168572 | None:intergenic | 35.0% |
| ! | GAAACTGAAAACAGTTGATG+CGG | - | chr1_4:59168589-59168608 | None:intergenic | 35.0% |
| TATACTATCAAGCACACACT+CGG | - | chr1_4:59169000-59169019 | None:intergenic | 35.0% | |
| !! | GTTTTTGTTTGTGAGGTGTA+CGG | + | chr1_4:59169065-59169084 | Msa0173810:CDS | 35.0% |
| ! | CTTAGGAATTGCATTCCTTT+TGG | - | chr1_4:59169139-59169158 | None:intergenic | 35.0% |
| GCAATTCCTAAGCTTAACTA+TGG | + | chr1_4:59169147-59169166 | Msa0173810:CDS | 35.0% | |
| ! | TTGCACACTTTGTGATTTTG+AGG | + | chr1_4:59169365-59169384 | Msa0173810:CDS | 35.0% |
| ! | ATCTGTTACTGTTAGGCTTT+TGG | + | chr1_4:59169572-59169591 | Msa0173810:intron | 35.0% |
| CAGTGGTTGAATAACTGTAT+TGG | + | chr1_4:59169656-59169675 | Msa0173810:intron | 35.0% | |
| ! | GATGATTTTCGTCCTGTTAA+TGG | + | chr1_4:59169709-59169728 | Msa0173810:CDS | 35.0% |
| CTGCAATTGCGATATTTATC+AGG | + | chr1_4:59169865-59169884 | Msa0173810:CDS | 35.0% | |
| GATATTTATCAGGTGCTTTG+TGG | + | chr1_4:59169875-59169894 | Msa0173810:CDS | 35.0% | |
| GAATAGAAAAGGAGCTTCAT+AGG | + | chr1_4:59169907-59169926 | Msa0173810:CDS | 35.0% | |
| ! | CTTTTTGTAGAGTTTCCAAG+AGG | + | chr1_4:59169933-59169952 | Msa0173810:CDS | 35.0% |
| GATGACTATTACACATATGG+TGG | - | chr1_4:59169967-59169986 | None:intergenic | 35.0% | |
| AGAGAACTACCTTTCGTATT+AGG | - | chr1_4:59170155-59170174 | None:intergenic | 35.0% | |
| AGAACTGCACAGAAAATCAA+AGG | - | chr1_4:59170303-59170322 | None:intergenic | 35.0% | |
| TTTGTTTCATAAAGGGGATG+AGG | + | chr1_4:59170348-59170367 | Msa0173810:intron | 35.0% | |
| CATTGCCAGAATATAGTCAT+AGG | - | chr1_4:59170375-59170394 | None:intergenic | 35.0% | |
| ATCAAATGACTCCAATTCCA+TGG | - | chr1_4:59170414-59170433 | None:intergenic | 35.0% | |
| AAAAGCCAACACTAATGTCA+AGG | + | chr1_4:59170480-59170499 | Msa0173810:CDS | 35.0% | |
| ! | AAGGATTTTATGCAAAGGAC+AGG | + | chr1_4:59170499-59170518 | Msa0173810:CDS | 35.0% |
| ! | TAAGGTTTGAGACAGAATGA+AGG | - | chr1_4:59170555-59170574 | None:intergenic | 35.0% |
| TCAAAACAAGCTTCTCTGTA+AGG | - | chr1_4:59170573-59170592 | None:intergenic | 35.0% | |
| TCAATCTTGATAGACAACCT+AGG | - | chr1_4:59170610-59170629 | None:intergenic | 35.0% | |
| !! | CCTTTTTGTGTTGATCAAAG+GGG | - | chr1_4:59170650-59170669 | None:intergenic | 35.0% |
| TCAACTTTACGAGTTTCCAA+GGG | - | chr1_4:59170690-59170709 | None:intergenic | 35.0% | |
| TTCATTAAGACCTCTTCCAT+TGG | + | chr1_4:59170786-59170805 | Msa0173810:CDS | 35.0% | |
| AATATTGGCAATGAGGGATT+TGG | + | chr1_4:59170844-59170863 | Msa0173810:CDS | 35.0% | |
| ATATTGGCAATGAGGGATTT+GGG | + | chr1_4:59170845-59170864 | Msa0173810:CDS | 35.0% | |
| !! | AGTTCCCCTTTTGCTATAAA+AGG | - | chr1_4:59170877-59170896 | None:intergenic | 35.0% |
| !!! | AGTTTTGACTTGAAGTTAGC+AGG | + | chr1_4:59171006-59171025 | Msa0173810:CDS | 35.0% |
| AGCTTGAAACACATATTTCC+AGG | + | chr1_4:59171040-59171059 | Msa0173810:CDS | 35.0% | |
| TGTTCAGTTATCAGCAAAGA+TGG | + | chr1_4:59171072-59171091 | Msa0173810:CDS | 35.0% | |
| AATACAATGCCTACGATCTT+GGG | - | chr1_4:59171110-59171129 | None:intergenic | 35.0% | |
| AAATACAATGCCTACGATCT+TGG | - | chr1_4:59171111-59171130 | None:intergenic | 35.0% | |
| ATAGGATAATTCCAGCCAAA+TGG | + | chr1_4:59171268-59171287 | Msa0173810:three_prime_UTR | 35.0% | |
| CTGAAAATTACAGGTCCATT+TGG | - | chr1_4:59171286-59171305 | None:intergenic | 35.0% | |
| ! | AATGGACCTGTAATTTTCAG+AGG | + | chr1_4:59171286-59171305 | Msa0173810:three_prime_UTR | 35.0% |
| AATGTGACAGTTTGTAGGCA+TGG | + | chr1_4:59167883-59167902 | Msa0173810:intron | 40.0% | |
| ATGTGACAGTTTGTAGGCAT+GGG | + | chr1_4:59167884-59167903 | Msa0173810:intron | 40.0% | |
| CATGGGGATTTATAGTTTCC+TGG | + | chr1_4:59167901-59167920 | Msa0173810:CDS | 40.0% | |
| AAGTATAGAAACACACCACC+AGG | - | chr1_4:59167922-59167941 | None:intergenic | 40.0% | |
| TGAGTGTTATCTCAGCAGTT+CGG | - | chr1_4:59167967-59167986 | None:intergenic | 40.0% | |
| ! | CACCTCCATATTTTCCTTCA+TGG | + | chr1_4:59167985-59168004 | Msa0173810:CDS | 40.0% |
| ATCTGTGCTAAACCGATCAA+AGG | + | chr1_4:59168175-59168194 | Msa0173810:intron | 40.0% | |
| ! | GATCAAAGGTACACTGTGTT+TGG | + | chr1_4:59168189-59168208 | Msa0173810:intron | 40.0% |
| !! | TTTAGGTAACGGAAATGAGG+GGG | + | chr1_4:59168282-59168301 | Msa0173810:intron | 40.0% |
| !! | AAAGGAGCATTTCTGAGATG+GGG | - | chr1_4:59168349-59168368 | None:intergenic | 40.0% |
| !! | GAAAGGAGCATTTCTGAGAT+GGG | - | chr1_4:59168350-59168369 | None:intergenic | 40.0% |
| ATGTTACAGCACCAATAGCA+GGG | - | chr1_4:59168372-59168391 | None:intergenic | 40.0% | |
| AATGTTACAGCACCAATAGC+AGG | - | chr1_4:59168373-59168392 | None:intergenic | 40.0% | |
| !!! | GACATATATTTTGGGACGGA+GGG | + | chr1_4:59168479-59168498 | Msa0173810:intron | 40.0% |
| !! | GTTGTTATGCTGGTTTAGAG+GGG | - | chr1_4:59168543-59168562 | None:intergenic | 40.0% |
| !! | TTGAAACTGGTTCTGTCTGT+AGG | - | chr1_4:59169099-59169118 | None:intergenic | 40.0% |
| TTATTGGTCAGATTGTGGTG+AGG | + | chr1_4:59169175-59169194 | Msa0173810:CDS | 40.0% | |
| ! | AGATTGTGGTGAGGTTTTTC+AGG | + | chr1_4:59169184-59169203 | Msa0173810:CDS | 40.0% |
| ACAAATGGAAATGGGAGAAG+AGG | - | chr1_4:59169288-59169307 | None:intergenic | 40.0% | |
| !! | TGTCGTCCTCTTTAAGATCA+GGG | - | chr1_4:59169338-59169357 | None:intergenic | 40.0% |
| !! | ATGTCGTCCTCTTTAAGATC+AGG | - | chr1_4:59169339-59169358 | None:intergenic | 40.0% |
| ACTTGTAATCGTTGCGTTGA+AGG | + | chr1_4:59169524-59169543 | Msa0173810:CDS | 40.0% | |
| CTTGTAATCGTTGCGTTGAA+GGG | + | chr1_4:59169525-59169544 | Msa0173810:CDS | 40.0% | |
| GGTCAGTATCTGTTACTGTT+AGG | + | chr1_4:59169565-59169584 | Msa0173810:intron | 40.0% | |
| !! | ACATGGTGTTGGAAACGTTT+TGG | - | chr1_4:59169813-59169832 | None:intergenic | 40.0% |
| GTTCACATAACACATGGTGT+TGG | - | chr1_4:59169824-59169843 | None:intergenic | 40.0% | |
| TGAGCTGTTCACATAACACA+TGG | - | chr1_4:59169830-59169849 | None:intergenic | 40.0% | |
| TGTGAACAGCTCATCATTGA+AGG | + | chr1_4:59169837-59169856 | Msa0173810:intron | 40.0% | |
| AACAGCTCATCATTGAAGGA+GGG | + | chr1_4:59169841-59169860 | Msa0173810:intron | 40.0% | |
| GGATAAGAGGGGAATAGAAA+AGG | + | chr1_4:59169896-59169915 | Msa0173810:CDS | 40.0% | |
| TGAACTTCATGAAATGCTGC+AGG | + | chr1_4:59170062-59170081 | Msa0173810:intron | 40.0% | |
| AGCTTATAGTTCAGCTGCAT+TGG | + | chr1_4:59170104-59170123 | Msa0173810:CDS | 40.0% | |
| GCTTATAGTTCAGCTGCATT+GGG | + | chr1_4:59170105-59170124 | Msa0173810:CDS | 40.0% | |
| CTTATAGTTCAGCTGCATTG+GGG | + | chr1_4:59170106-59170125 | Msa0173810:CDS | 40.0% | |
| TCACGTTCTCCTAATACGAA+AGG | + | chr1_4:59170143-59170162 | Msa0173810:CDS | 40.0% | |
| GGTAGTTCTCTTTCTTGCTT+TGG | + | chr1_4:59170164-59170183 | Msa0173810:intron | 40.0% | |
| GAGGACCTATGACTATATTC+TGG | + | chr1_4:59170367-59170386 | Msa0173810:CDS | 40.0% | |
| AGAGAATGAAGCCATGGAAT+TGG | + | chr1_4:59170400-59170419 | Msa0173810:CDS | 40.0% | |
| CAATGCTGTCATCTGATGAA+AGG | - | chr1_4:59170445-59170464 | None:intergenic | 40.0% | |
| !!! | GACATTAGTGTTGGCTTTTC+AGG | - | chr1_4:59170479-59170498 | None:intergenic | 40.0% |
| ! | GACAGAATGAAGGCATAAAG+CGG | - | chr1_4:59170545-59170564 | None:intergenic | 40.0% |
| ! | TTTGTGTTGATCAAAGGGGA+AGG | - | chr1_4:59170646-59170665 | None:intergenic | 40.0% |
| CCCCTTTGATCAACACAAAA+AGG | + | chr1_4:59170647-59170666 | Msa0173810:CDS | 40.0% | |
| TTCACGTAAGCATTAACCCT+TGG | + | chr1_4:59170671-59170690 | Msa0173810:CDS | 40.0% | |
| GTCAACTTTACGAGTTTCCA+AGG | - | chr1_4:59170691-59170710 | None:intergenic | 40.0% | |
| !! | TGCAAGTAGAGCTTTTTCTC+TGG | - | chr1_4:59170713-59170732 | None:intergenic | 40.0% |
| CTTGGACTTGAAAGCCTTAA+TGG | - | chr1_4:59170910-59170929 | None:intergenic | 40.0% | |
| CCTGCAGAAAATCTTCTTCT+TGG | - | chr1_4:59170928-59170947 | None:intergenic | 40.0% | |
| ! | CCAAGAAGAAGATTTTCTGC+AGG | + | chr1_4:59170925-59170944 | Msa0173810:CDS | 40.0% |
| TGAAACACATATTTCCAGGC+AGG | + | chr1_4:59171044-59171063 | Msa0173810:CDS | 40.0% | |
| ATACAATGCCTACGATCTTG+GGG | - | chr1_4:59171109-59171128 | None:intergenic | 40.0% | |
| AAATTACAGGTCCATTTGGC+TGG | - | chr1_4:59171282-59171301 | None:intergenic | 40.0% | |
| ! | GCATTGCCTCTGAAAATTAC+AGG | - | chr1_4:59171295-59171314 | None:intergenic | 40.0% |
| GCTCTTTCTCGTCAACTCAA+CGG | - | chr1_4:59167688-59167707 | None:intergenic | 45.0% | |
| ATAGACACTATGAGACGCCA+TGG | + | chr1_4:59167751-59167770 | Msa0173810:exon | 45.0% | |
| ACGTCCTCTTCATCCTTTAC+AGG | + | chr1_4:59167780-59167799 | Msa0173810:CDS | 45.0% | |
| TGTGACAGTTTGTAGGCATG+GGG | + | chr1_4:59167885-59167904 | Msa0173810:intron | 45.0% | |
| GGGGATTTATAGTTTCCTGG+TGG | + | chr1_4:59167904-59167923 | Msa0173810:CDS | 45.0% | |
| !! | AAGGAGCATTTCTGAGATGG+GGG | - | chr1_4:59168348-59168367 | None:intergenic | 45.0% |
| !! | GGAAAGGAGCATTTCTGAGA+TGG | - | chr1_4:59168351-59168370 | None:intergenic | 45.0% |
| AATGCTCCTTTCCCTGCTAT+TGG | + | chr1_4:59168358-59168377 | Msa0173810:intron | 45.0% | |
| !!! | CGACATATATTTTGGGACGG+AGG | + | chr1_4:59168478-59168497 | Msa0173810:intron | 45.0% |
| ! | ACTGAAAACAGTTGATGCGG+TGG | - | chr1_4:59168586-59168605 | None:intergenic | 45.0% |
| !!! | TTGTGGTGAGGTTTTTCAGG+AGG | + | chr1_4:59169187-59169206 | Msa0173810:CDS | 45.0% |
| !!! | TGTGGTGAGGTTTTTCAGGA+GGG | + | chr1_4:59169188-59169207 | Msa0173810:CDS | 45.0% |
| GGGTGGAAAAGAAGTTGCTT+AGG | + | chr1_4:59169208-59169227 | Msa0173810:CDS | 45.0% | |
| ACTTGTGCACTCGTCTTCAA+CGG | - | chr1_4:59169261-59169280 | None:intergenic | 45.0% | |
| TGTCGTCCCTGATCTTAAAG+AGG | + | chr1_4:59169329-59169348 | Msa0173810:CDS | 45.0% | |
| AAGGGTTTGATCACCATTGC+AGG | + | chr1_4:59169543-59169562 | Msa0173810:CDS | 45.0% | |
| AGGGTTTGATCACCATTGCA+GGG | + | chr1_4:59169544-59169563 | Msa0173810:CDS | 45.0% | |
| AACAGATACTGACCCTGCAA+TGG | - | chr1_4:59169559-59169578 | None:intergenic | 45.0% | |
| GAACAGCTCATCATTGAAGG+AGG | + | chr1_4:59169840-59169859 | Msa0173810:intron | 45.0% | |
| TCAGGTGCTTTGTGGATAAG+AGG | + | chr1_4:59169883-59169902 | Msa0173810:CDS | 45.0% | |
| CAGGTGCTTTGTGGATAAGA+GGG | + | chr1_4:59169884-59169903 | Msa0173810:CDS | 45.0% | |
| AGGTGCTTTGTGGATAAGAG+GGG | + | chr1_4:59169885-59169904 | Msa0173810:CDS | 45.0% | |
| ! | AATCAAAGGCTGGAGCACTT+TGG | - | chr1_4:59170289-59170308 | None:intergenic | 45.0% |
| CTGCACAGAAAATCAAAGGC+TGG | - | chr1_4:59170299-59170318 | None:intergenic | 45.0% | |
| GAGAGAAGAGAATGAAGCCA+TGG | + | chr1_4:59170394-59170413 | Msa0173810:CDS | 45.0% | |
| ! | TGAGTTTTCAGAGCTCACCT+AGG | + | chr1_4:59170590-59170609 | Msa0173810:intron | 45.0% |
| TACTTGCAGCTGAGAAAGCA+AGG | + | chr1_4:59170725-59170744 | Msa0173810:CDS | 45.0% | |
| ACTTGCAGCTGAGAAAGCAA+GGG | + | chr1_4:59170726-59170745 | Msa0173810:CDS | 45.0% | |
| AATGAACTGTGCTCCCTCAT+TGG | - | chr1_4:59170772-59170791 | None:intergenic | 45.0% | |
| ! | CGTTTTGTCTCCAATGGAAG+AGG | - | chr1_4:59170799-59170818 | None:intergenic | 45.0% |
| CTTCCATTGGAGACAAAACG+CGG | + | chr1_4:59170799-59170818 | Msa0173810:CDS | 45.0% | |
| ! | ATTTTCTGCAGGCACACCAT+CGG | + | chr1_4:59170936-59170955 | Msa0173810:CDS | 45.0% |
| ATGCTGCTAGAGAATACCGA+TGG | - | chr1_4:59170955-59170974 | None:intergenic | 45.0% | |
| TGAAGTTAGCAGGTGTGTCT+AGG | + | chr1_4:59171016-59171035 | Msa0173810:CDS | 45.0% | |
| GAAGTTAGCAGGTGTGTCTA+GGG | + | chr1_4:59171017-59171036 | Msa0173810:CDS | 45.0% | |
| AACTGAACATAGAACCTGCC+TGG | - | chr1_4:59171061-59171080 | None:intergenic | 45.0% | |
| !!! | ATTATTATTTATTTTTGAAT+TGG | + | chr1_4:59168127-59168146 | Msa0173810:intron | 5.0% |
| !!! | ATTGATATTTTTTAATTTAA+GGG | + | chr1_4:59168876-59168895 | Msa0173810:intron | 5.0% |
| ACACTATGAGACGCCATGGT+TGG | + | chr1_4:59167755-59167774 | Msa0173810:exon | 50.0% | |
| ACTTTCCTCGGACTCTTCCT+CGG | + | chr1_4:59167938-59167957 | Msa0173810:CDS | 50.0% | |
| ACAGCACCAATAGCAGGGAA+AGG | - | chr1_4:59168367-59168386 | None:intergenic | 50.0% | |
| ! | GCTGGTTTAGAGGGGTTATC+TGG | - | chr1_4:59168535-59168554 | None:intergenic | 50.0% |
| ! | AACAGTTGATGCGGTGGCAT+TGG | - | chr1_4:59168580-59168599 | None:intergenic | 50.0% |
| GTTGAAGACGAGTGCACAAG+TGG | + | chr1_4:59169260-59169279 | Msa0173810:CDS | 50.0% | |
| ATGGTGGCAAGAAGTCCTCT+TGG | - | chr1_4:59169951-59169970 | None:intergenic | 50.0% | |
| CAGCTGAGAAAGCAAGGGAA+AGG | + | chr1_4:59170731-59170750 | Msa0173810:CDS | 50.0% | |
| TCGTGCGAGAAAGACCAATG+AGG | + | chr1_4:59170755-59170774 | Msa0173810:CDS | 50.0% | |
| CGTGCGAGAAAGACCAATGA+GGG | + | chr1_4:59170756-59170775 | Msa0173810:CDS | 50.0% | |
| TGAACCATCCCCAAGATCGT+AGG | + | chr1_4:59171098-59171117 | Msa0173810:CDS | 50.0% | |
| AATGCCTACGATCTTGGGGA+TGG | - | chr1_4:59171105-59171124 | None:intergenic | 50.0% | |
| GAAGAGGACGTTGCCAACCA+TGG | - | chr1_4:59167771-59167790 | None:intergenic | 55.0% | |
| TCTCAGCAGTTCGGTTTCCG+AGG | - | chr1_4:59167958-59167977 | None:intergenic | 55.0% | |
| !! | AGCATTTCTGAGATGGGGGC+TGG | - | chr1_4:59168344-59168363 | None:intergenic | 55.0% |
| !!! | GGTGAGGTTTTTCAGGAGGG+TGG | + | chr1_4:59169191-59169210 | Msa0173810:CDS | 55.0% |
| ! | GGTCCGCGTTTTGTCTCCAA+TGG | - | chr1_4:59170805-59170824 | None:intergenic | 55.0% |
| ACGCGGACCATTGACGAATG+TGG | + | chr1_4:59170816-59170835 | Msa0173810:CDS | 55.0% | |
| GGTTTCCGAGGAAGAGTCCG+AGG | - | chr1_4:59167946-59167965 | None:intergenic | 60.0% | |
| !! | GGTAACGGAAATGAGGGGGC+TGG | + | chr1_4:59168286-59168305 | Msa0173810:intron | 60.0% |
| ! | GGGGCTGGTGCAATGTAGCT+CGG | + | chr1_4:59168301-59168320 | Msa0173810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 59167641 | 59171358 | 59167641 | ID=Msa0173810;Name=Msa0173810 |
| chr1_4 | mRNA | 59167641 | 59171358 | 59167641 | ID=Msa0173810-mRNA-1;Parent=Msa0173810;Name=Msa0173810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=119|1|1|1|1|1|9|239|506 |
| chr1_4 | exon | 59167641 | 59167801 | 59167641 | ID=Msa0173810-mRNA-1:exon:18477;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59167893 | 59168006 | 59167893 | ID=Msa0173810-mRNA-1:exon:18478;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59169051 | 59169386 | 59169051 | ID=Msa0173810-mRNA-1:exon:18479;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59169497 | 59169565 | 59169497 | ID=Msa0173810-mRNA-1:exon:18480;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59169659 | 59169730 | 59169659 | ID=Msa0173810-mRNA-1:exon:18481;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59169846 | 59169974 | 59169846 | ID=Msa0173810-mRNA-1:exon:18482;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59170084 | 59170164 | 59170084 | ID=Msa0173810-mRNA-1:exon:18483;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59170362 | 59170520 | 59170362 | ID=Msa0173810-mRNA-1:exon:18484;Parent=Msa0173810-mRNA-1 |
| chr1_4 | exon | 59170601 | 59171358 | 59170601 | ID=Msa0173810-mRNA-1:exon:18485;Parent=Msa0173810-mRNA-1 |
| chr1_4 | five_prime_UTR | 59167641 | 59167759 | 59167641 | ID=Msa0173810-mRNA-1:five_prime_utr;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59167760 | 59167801 | 59167760 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59167893 | 59168006 | 59167893 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59169051 | 59169386 | 59169051 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59169497 | 59169565 | 59169497 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59169659 | 59169730 | 59169659 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59169846 | 59169974 | 59169846 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59170084 | 59170164 | 59170084 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59170362 | 59170520 | 59170362 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | CDS | 59170601 | 59171119 | 59170601 | ID=Msa0173810-mRNA-1:cds;Parent=Msa0173810-mRNA-1 |
| chr1_4 | three_prime_UTR | 59171120 | 59171358 | 59171120 | ID=Msa0173810-mRNA-1:three_prime_utr;Parent=Msa0173810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
