AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032700 MtrunA17_Chr1g0192381 81.919 271 34 3 1 266 5 265 3.48e-150 420
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032700 AT3G05625.1 62.264 265 78 5 2 264 9 253 1.23e-112 325
Msa0032700 AT3G05625.2 59.000 200 60 5 2 199 9 188 9.60e-73 221

Find 84 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCCTTCCTTCTGTTTC+CGG 0.124019 1_1:-59876219 Msa0032700:CDS
TTCACTGTCTTTGCCGAAAT+TGG 0.138782 1_1:-59873785 Msa0032700:CDS
TTCCTTCTGTTTCCGGCATC+TGG 0.151607 1_1:-59876212 Msa0032700:CDS
AGGTAGTGGTGGTGGGTTTA+AGG 0.199019 1_1:+59876337 None:intergenic
TCGTCAATATCAATTGAATT+TGG 0.230249 1_1:-59875939 Msa0032700:CDS
CATTTGTTAGGGTGATGTTT+TGG 0.230806 1_1:-59876042 Msa0032700:intron
GGTTTAAGGTTGTGGATAAT+TGG 0.241491 1_1:+59876351 None:intergenic
GCTGCTTGCAAATCTCCTTA+TGG 0.251539 1_1:-59873939 Msa0032700:CDS
ATTGAATTTGGAATTGGAAT+TGG 0.276732 1_1:-59875927 Msa0032700:CDS
ATGCAGGTCTGATGATTATA+TGG 0.301057 1_1:-59873823 Msa0032700:intron
CTGTGTGAAGCTCAACTATA+TGG 0.307850 1_1:-59874804 Msa0032700:CDS
TTCAGCTGAAGTTCCAATTT+CGG 0.309631 1_1:+59873772 None:intergenic
GGAGAGTAAGGTAGTGGTGG+TGG 0.312943 1_1:+59876329 None:intergenic
TTTGGAATTGGAATTGGAAT+TGG 0.315183 1_1:-59875921 Msa0032700:CDS
GGAAACATATAACATGTTTA+AGG 0.318035 1_1:-59874630 Msa0032700:CDS
ATAATCGCTTTCTCTGCTAT+TGG 0.320277 1_1:+59874430 None:intergenic
ATATCAATTGAATTTGGAAT+TGG 0.323162 1_1:-59875933 Msa0032700:CDS
TTAGATGAGTGAACTACATT+AGG 0.328037 1_1:-59873560 Msa0032700:three_prime_UTR
GATTTACCCGTGTAGCTTGT+AGG 0.333350 1_1:-59874461 Msa0032700:intron
CTGCTTGCAAATCTCCTTAT+GGG 0.339629 1_1:-59873938 Msa0032700:CDS
ATGGACTCTTCCGTATCATT+TGG 0.341909 1_1:+59874837 None:intergenic
TGGTGGTGGGTTTAAGGTTG+TGG 0.360687 1_1:+59876343 None:intergenic
AAGAAGGAGCTGAGCAGTTT+CGG 0.373836 1_1:-59874878 Msa0032700:CDS
GTTTGATAAAGCAATTGAAT+TGG 0.379643 1_1:-59876006 Msa0032700:CDS
AATTGCAAGAAGGGCTTCAT+TGG 0.387452 1_1:+59876155 None:intergenic
AGTCTTCGAGAGAGATTTGA+AGG 0.396830 1_1:+59876240 None:intergenic
AATTGATATTGACGAAAGTT+CGG 0.400065 1_1:+59875947 None:intergenic
AAATCAAACCTTTGCCCATA+AGG 0.405834 1_1:+59873924 None:intergenic
TCCTTCTGTTTCCGGCATCT+GGG 0.413953 1_1:-59876211 Msa0032700:CDS
TGAAGGATTGGAGCAAAAGA+TGG 0.433606 1_1:+59876257 None:intergenic
TGAATATTAGTTGACTGTAC+TGG 0.442168 1_1:-59873631 Msa0032700:three_prime_UTR
GTTTCCCTCATGACAGGCCT+TGG 0.443161 1_1:+59874647 None:intergenic
GGCATCTGGGACGCCATCAC+CGG 0.445468 1_1:-59876198 Msa0032700:CDS
GACGCCATCACCGGCGGCAG+CGG 0.446702 1_1:-59876189 Msa0032700:CDS
TCGAGAGAGATTTGAAGGAT+TGG 0.454213 1_1:+59876245 None:intergenic
GAGAGTAAGGTAGTGGTGGT+GGG 0.471942 1_1:+59876330 None:intergenic
TTATCTGGAAGACTGGTTGA+TGG 0.477062 1_1:+59873518 None:intergenic
ATTGCCGCTGCCGCCGGTGA+TGG 0.479013 1_1:+59876185 None:intergenic
TTTATGCTTCGCTATATGCT+GGG 0.488456 1_1:-59874406 Msa0032700:CDS
TGGGCTTTATTACGAATCTC+AGG 0.491384 1_1:-59874387 Msa0032700:intron
GGTGATGGCGTCCCAGATGC+CGG 0.498720 1_1:+59876200 None:intergenic
GTTGTTATTGCCGCTGCCGC+CGG 0.501222 1_1:+59876179 None:intergenic
ATAAACATTATCTGGAAGAC+TGG 0.502377 1_1:+59873511 None:intergenic
GATAATTGGCATGGACTTAG+TGG 0.503671 1_1:+59876365 None:intergenic
GGTAACAAGCATCGTAGCCC+AGG 0.504504 1_1:+59876415 None:intergenic
TGAATTGGATCCTCGTCAAA+AGG 0.506304 1_1:-59875991 Msa0032700:CDS
GAAGGATTGGAGCAAAAGAT+GGG 0.507555 1_1:+59876258 None:intergenic
TTGAAAGATGATGATGATGA+TGG 0.514554 1_1:+59876285 None:intergenic
ATGATACGGAAGAGTCCATA+TGG 0.514782 1_1:-59874833 Msa0032700:CDS
TTATATGTTTCCCTCATGAC+AGG 0.514876 1_1:+59874641 None:intergenic
AAAATTAAGTAAAATGATGA+AGG 0.521273 1_1:+59873665 None:intergenic
TTATATGGCTTCTCTTTCCA+AGG 0.521826 1_1:-59873808 Msa0032700:CDS
GCAAATCTCCTTATGGGCAA+AGG 0.522193 1_1:-59873932 Msa0032700:intron
TATAACATGTTTAAGGATGG+TGG 0.523328 1_1:-59874623 Msa0032700:CDS
TCCTCGTCGAATTGCAAGAA+GGG 0.524837 1_1:+59876146 None:intergenic
TGGGAATGGTGAAGAAAGGA+AGG 0.526224 1_1:+59876305 None:intergenic
TTCACACAGAAAACACCATA+TGG 0.527292 1_1:+59874818 None:intergenic
ATAACATGTTTAAGGATGGT+GGG 0.535247 1_1:-59874622 Msa0032700:CDS
TGCTCAAAATCCAAATGATA+CGG 0.539447 1_1:-59874847 Msa0032700:CDS
GGATGGTGGGGATCCTGAAA+AGG 0.539874 1_1:-59874609 Msa0032700:intron
AAGGTTGTGGATAATTGGCA+TGG 0.556289 1_1:+59876356 None:intergenic
TCGGCAAAGACAGTGAACCT+TGG 0.571507 1_1:+59873791 None:intergenic
ATCTGGGACGCCATCACCGG+CGG 0.572114 1_1:-59876195 Msa0032700:CDS
GGAATGGTGAAGAAAGGAAG+GGG 0.575992 1_1:+59876307 None:intergenic
TACATTACAGTCTAAAGAGA+TGG 0.581754 1_1:-59873708 Msa0032700:three_prime_UTR
TCCCAGATGCCGGAAACAGA+AGG 0.582501 1_1:+59876210 None:intergenic
ACATATAACATGTTTAAGGA+TGG 0.584854 1_1:-59874626 Msa0032700:CDS
ATGATGGGAATGGTGAAGAA+AGG 0.586825 1_1:+59876301 None:intergenic
TTCCTCGTCGAATTGCAAGA+AGG 0.589113 1_1:+59876145 None:intergenic
TAACATGTTTAAGGATGGTG+GGG 0.591570 1_1:-59874621 Msa0032700:CDS
TTTAGGTTGGCAGAGATCCA+AGG 0.592463 1_1:-59874664 Msa0032700:intron
AGGAATGTCTCTCTTCAGAC+AGG 0.594107 1_1:-59876127 Msa0032700:intron
GAGATCCAAGGCCTGTCATG+AGG 0.597114 1_1:-59874652 Msa0032700:CDS
GGGAATGGTGAAGAAAGGAA+GGG 0.615047 1_1:+59876306 None:intergenic
GGATTGGAGCAAAAGATGGG+TGG 0.615577 1_1:+59876261 None:intergenic
AGCAAGAAAGCGATATCTTG+AGG 0.633760 1_1:-59874772 Msa0032700:intron
AGATCCAAGGCCTGTCATGA+GGG 0.634537 1_1:-59874651 Msa0032700:CDS
AGATGCCGGAAACAGAAGGA+AGG 0.639435 1_1:+59876214 None:intergenic
GCATGGACTTAGTGGAAGCG+CGG 0.644332 1_1:+59876373 None:intergenic
GAATGGTGAAGAAAGGAAGG+GGG 0.644780 1_1:+59876308 None:intergenic
ATCCTCGTCAAAAGGCCTGT+AGG 0.646953 1_1:-59875983 Msa0032700:CDS
GTAACAAGCATCGTAGCCCA+GGG 0.652453 1_1:+59876416 None:intergenic
GCCCTTCTTGCAATTCGACG+AGG 0.664402 1_1:-59876147 Msa0032700:CDS
TGAAGCTCAACTATATGGTG+TGG 0.677146 1_1:-59874799 Msa0032700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATAAAAATCATTCATT+TGG + chr1_1:59875018-59875037 None:intergenic 10.0%
!!! TTATTTTATGAAATTTACAA+AGG + chr1_1:59875369-59875388 None:intergenic 10.0%
!! TTGAAATGAATTAAAAAAGT+TGG + chr1_1:59874469-59874488 None:intergenic 15.0%
!!! AAGTACATTTTGTTTAATAA+GGG - chr1_1:59874748-59874767 Msa0032700:intron 15.0%
!! TCTGAATATATTATAACAAA+AGG - chr1_1:59874968-59874987 Msa0032700:intron 15.0%
!! AGATTATATATACATCATAT+TGG - chr1_1:59875645-59875664 Msa0032700:intron 15.0%
!!! TATACTTTATTGTTACTTTT+TGG - chr1_1:59875774-59875793 Msa0032700:intron 15.0%
!! AAAATTAAGTAAAATGATGA+AGG + chr1_1:59876276-59876295 None:intergenic 15.0%
!!! GGATTTAATTATTTTATGTG+GGG + chr1_1:59873547-59873566 None:intergenic 20.0%
!!! CGGATTTAATTATTTTATGT+GGG + chr1_1:59873548-59873567 None:intergenic 20.0%
!! CAGTATCAAAATATCTTTAA+TGG - chr1_1:59873851-59873870 Msa0032700:intron 20.0%
!!! ATATCAATTGAATTTGGAAT+TGG - chr1_1:59874005-59874024 Msa0032700:intron 20.0%
!! ATACAAGCTTAATCTAAATT+AGG - chr1_1:59874344-59874363 Msa0032700:intron 20.0%
!!! GTCTATATTTTTAAGAAGAA+TGG + chr1_1:59874499-59874518 None:intergenic 20.0%
!! GAAAGAATATATTCTGATAA+TGG - chr1_1:59874580-59874599 Msa0032700:intron 20.0%
!!! CAAGTACATTTTGTTTAATA+AGG - chr1_1:59874747-59874766 Msa0032700:intron 20.0%
!! TTAACTTTCTTGATGAATTT+AGG - chr1_1:59875257-59875276 Msa0032700:intron 20.0%
!! TAATACACAATATTTCAGTT+TGG + chr1_1:59875837-59875856 None:intergenic 20.0%
!!! CATCATTTTACTTAATTTTG+TGG - chr1_1:59876277-59876296 Msa0032700:CDS 20.0%
!!! GCGGATTTAATTATTTTATG+TGG + chr1_1:59873549-59873568 None:intergenic 25.0%
! GTTTGATAAAGCAATTGAAT+TGG - chr1_1:59873932-59873951 Msa0032700:intron 25.0%
! AATTGATATTGACGAAAGTT+CGG + chr1_1:59873994-59874013 None:intergenic 25.0%
! TCGTCAATATCAATTGAATT+TGG - chr1_1:59873999-59874018 Msa0032700:intron 25.0%
!! ATTGAATTTGGAATTGGAAT+TGG - chr1_1:59874011-59874030 Msa0032700:intron 25.0%
! TTATAGCTTCTACAAAATCA+CGG + chr1_1:59874270-59874289 None:intergenic 25.0%
! ATTTAGATTAAGCTTGTATG+TGG + chr1_1:59874343-59874362 None:intergenic 25.0%
!!! ACAATTTTGTGTCATTAGTT+AGG + chr1_1:59874547-59874566 None:intergenic 25.0%
! ACTAATGACACAAAATTGTA+TGG - chr1_1:59874548-59874567 Msa0032700:intron 25.0%
!!! AGAATATATTCTGATAATGG+TGG - chr1_1:59874583-59874602 Msa0032700:intron 25.0%
! AATAAGATATGAAATAGCCA+AGG + chr1_1:59874849-59874868 None:intergenic 25.0%
!! TTTTTCCATAGATTTGAAGA+AGG - chr1_1:59875044-59875063 Msa0032700:intron 25.0%
!!! ATTGTCATGTTCTTTTTTCA+CGG + chr1_1:59875225-59875244 None:intergenic 25.0%
! GGAAACATATAACATGTTTA+AGG - chr1_1:59875308-59875327 Msa0032700:intron 25.0%
! ACATATAACATGTTTAAGGA+TGG - chr1_1:59875312-59875331 Msa0032700:intron 25.0%
! ACTGCATTTAAATTGTGAAA+GGG + chr1_1:59875398-59875417 None:intergenic 25.0%
! AACTGCATTTAAATTGTGAA+AGG + chr1_1:59875399-59875418 None:intergenic 25.0%
! TATCAGATTGCATTTCATAA+AGG + chr1_1:59875448-59875467 None:intergenic 25.0%
! TAGTAAGGAAAGAAAAATGT+TGG + chr1_1:59875591-59875610 None:intergenic 25.0%
! TGAAAGATGATGATGATGAT+GGG + chr1_1:59873655-59873674 None:intergenic 30.0%
! TTGAAAGATGATGATGATGA+TGG + chr1_1:59873656-59873675 None:intergenic 30.0%
!! ATTTGTTAGGGTGATGTTTT+GGG - chr1_1:59873897-59873916 Msa0032700:intron 30.0%
! TTTGGAATTGGAATTGGAAT+TGG - chr1_1:59874017-59874036 Msa0032700:intron 30.0%
ACGAAACATACACACTAATT+TGG + chr1_1:59874207-59874226 None:intergenic 30.0%
CGATACTTCAATGATAGTAT+TGG - chr1_1:59874376-59874395 Msa0032700:intron 30.0%
!! TATGTTGCTATTTGTGTGTT+TGG - chr1_1:59874614-59874633 Msa0032700:CDS 30.0%
! TATTTGTGTGTTTGGAATCA+TGG - chr1_1:59874622-59874641 Msa0032700:CDS 30.0%
AGAAGCTTCATGTTAATATG+TGG - chr1_1:59874664-59874683 Msa0032700:intron 30.0%
GAAGCTTCATGTTAATATGT+GGG - chr1_1:59874665-59874684 Msa0032700:intron 30.0%
AAGCTTCATGTTAATATGTG+GGG - chr1_1:59874666-59874685 Msa0032700:intron 30.0%
!! ACAAACTTGTTAATGTACCT+TGG - chr1_1:59874829-59874848 Msa0032700:CDS 30.0%
TAGTACAATACGACATGTAT+AGG + chr1_1:59874892-59874911 None:intergenic 30.0%
TGCTCAAAATCCAAATGATA+CGG - chr1_1:59875091-59875110 Msa0032700:intron 30.0%
!!! TTGTCATGTTCTTTTTTCAC+GGG + chr1_1:59875224-59875243 None:intergenic 30.0%
CTTTCTTGATGAATTTAGGT+TGG - chr1_1:59875261-59875280 Msa0032700:intron 30.0%
TATAACATGTTTAAGGATGG+TGG - chr1_1:59875315-59875334 Msa0032700:intron 30.0%
ATAACATGTTTAAGGATGGT+GGG - chr1_1:59875316-59875335 Msa0032700:intron 30.0%
! TTGCATTTCATAAAGGCATA+AGG + chr1_1:59875441-59875460 None:intergenic 30.0%
AGTAACTGGTATAGTTAGTA+AGG + chr1_1:59875606-59875625 None:intergenic 30.0%
ATCTCTTAAGATGTCAAGAT+TGG + chr1_1:59875629-59875648 None:intergenic 30.0%
TGTGTATACATGCATTTGAT+TGG + chr1_1:59875711-59875730 None:intergenic 30.0%
CAAATGCATGTATACACAAA+TGG - chr1_1:59875713-59875732 Msa0032700:intron 30.0%
! AGCATCATTTTCATTCTATG+CGG + chr1_1:59875961-59875980 None:intergenic 30.0%
TACATTACAGTCTAAAGAGA+TGG - chr1_1:59876230-59876249 Msa0032700:CDS 30.0%
TGAATATTAGTTGACTGTAC+TGG - chr1_1:59876307-59876326 Msa0032700:CDS 30.0%
TTAGATGAGTGAACTACATT+AGG - chr1_1:59876378-59876397 Msa0032700:five_prime_UTR 30.0%
! GGTTTAAGGTTGTGGATAAT+TGG + chr1_1:59873590-59873609 None:intergenic 35.0%
! TAACGAGTGCTCATTTGTTA+GGG - chr1_1:59873885-59873904 Msa0032700:intron 35.0%
!! CATTTGTTAGGGTGATGTTT+TGG - chr1_1:59873896-59873915 Msa0032700:intron 35.0%
! TTTGTTAGGGTGATGTTTTG+GGG - chr1_1:59873898-59873917 Msa0032700:intron 35.0%
GGAAAAACGAATAAACCTAC+AGG + chr1_1:59873973-59873992 None:intergenic 35.0%
AATACCAGATCTTTGGCAAA+GGG - chr1_1:59874063-59874082 Msa0032700:intron 35.0%
TCTCACTTTACTACTTGGAT+AGG - chr1_1:59874089-59874108 Msa0032700:intron 35.0%
CAGAAAAATAAAAGCAGGTG+AGG + chr1_1:59874123-59874142 None:intergenic 35.0%
!!! CACCTGCTTTTATTTTTCTG+TGG - chr1_1:59874123-59874142 Msa0032700:intron 35.0%
AGCCACAGAAAAATAAAAGC+AGG + chr1_1:59874128-59874147 None:intergenic 35.0%
!!! TGCTTTTATTTTTCTGTGGC+TGG - chr1_1:59874127-59874146 Msa0032700:intron 35.0%
AGTGTGTATGTTTCGTATCA+CGG - chr1_1:59874211-59874230 Msa0032700:intron 35.0%
GTATGTCAGAATCACAATCA+CGG - chr1_1:59874237-59874256 Msa0032700:intron 35.0%
TAGATATGTTCGAATCACGT+TGG + chr1_1:59874312-59874331 None:intergenic 35.0%
TAAGCTTGTATGTGGTATCA+CGG + chr1_1:59874335-59874354 None:intergenic 35.0%
AACACGTACGTACTTGATAT+CGG - chr1_1:59874404-59874423 Msa0032700:CDS 35.0%
GATACTTTCTGAGTACACAT+TGG + chr1_1:59874447-59874466 None:intergenic 35.0%
CATGTTAATATGTGGGGAAA+AGG - chr1_1:59874672-59874691 Msa0032700:intron 35.0%
GTGATCATAACAAGTAGAGT+AGG + chr1_1:59874728-59874747 None:intergenic 35.0%
GTCGTATTGTACTATGTATG+CGG - chr1_1:59874898-59874917 Msa0032700:intron 35.0%
TCGTATTGTACTATGTATGC+GGG - chr1_1:59874899-59874918 Msa0032700:intron 35.0%
TTCACACAGAAAACACCATA+TGG + chr1_1:59875123-59875142 None:intergenic 35.0%
TTATATGTTTCCCTCATGAC+AGG + chr1_1:59875300-59875319 None:intergenic 35.0%
TAACATGTTTAAGGATGGTG+GGG - chr1_1:59875317-59875336 Msa0032700:intron 35.0%
! ATTATTGAGCACACCTTTTC+AGG + chr1_1:59875345-59875364 None:intergenic 35.0%
ATAATCGCTTTCTCTGCTAT+TGG + chr1_1:59875511-59875530 None:intergenic 35.0%
! TTTTATGCTTCGCTATATGC+TGG - chr1_1:59875531-59875550 Msa0032700:intron 35.0%
TTTATGCTTCGCTATATGCT+GGG - chr1_1:59875532-59875551 Msa0032700:intron 35.0%
AGTTACAAAGCTGAAGAAAG+TGG - chr1_1:59875810-59875829 Msa0032700:intron 35.0%
! GCATCATTTTCATTCTATGC+GGG + chr1_1:59875960-59875979 None:intergenic 35.0%
AAATCAAACCTTTGCCCATA+AGG + chr1_1:59876017-59876036 None:intergenic 35.0%
ATGCAGGTCTGATGATTATA+TGG - chr1_1:59876115-59876134 Msa0032700:intron 35.0%
TTATATGGCTTCTCTTTCCA+AGG - chr1_1:59876130-59876149 Msa0032700:CDS 35.0%
TTCAGCTGAAGTTCCAATTT+CGG + chr1_1:59876169-59876188 None:intergenic 35.0%
GATAATTGGCATGGACTTAG+TGG + chr1_1:59873576-59873595 None:intergenic 40.0%
AAGGTTGTGGATAATTGGCA+TGG + chr1_1:59873585-59873604 None:intergenic 40.0%
! ATGATGGGAATGGTGAAGAA+AGG + chr1_1:59873640-59873659 None:intergenic 40.0%
!! GATGATGATGATGATGGGAA+TGG + chr1_1:59873650-59873669 None:intergenic 40.0%
GAAGGATTGGAGCAAAAGAT+GGG + chr1_1:59873683-59873702 None:intergenic 40.0%
TGAAGGATTGGAGCAAAAGA+TGG + chr1_1:59873684-59873703 None:intergenic 40.0%
TCGAGAGAGATTTGAAGGAT+TGG + chr1_1:59873696-59873715 None:intergenic 40.0%
AGTCTTCGAGAGAGATTTGA+AGG + chr1_1:59873701-59873720 None:intergenic 40.0%
AATTGCAAGAAGGGCTTCAT+TGG + chr1_1:59873786-59873805 None:intergenic 40.0%
CTAACGAGTGCTCATTTGTT+AGG - chr1_1:59873884-59873903 Msa0032700:intron 40.0%
TGAATTGGATCCTCGTCAAA+AGG - chr1_1:59873947-59873966 Msa0032700:CDS 40.0%
GAGTTCCAATACCAGATCTT+TGG - chr1_1:59874056-59874075 Msa0032700:intron 40.0%
CTTTGCCAAAGATCTGGTAT+TGG + chr1_1:59874064-59874083 None:intergenic 40.0%
CAATACCAGATCTTTGGCAA+AGG - chr1_1:59874062-59874081 Msa0032700:intron 40.0%
ATACCAGATCTTTGGCAAAG+GGG - chr1_1:59874064-59874083 Msa0032700:intron 40.0%
!! TTTTTCTGTGGCTGGTTATG+TGG - chr1_1:59874135-59874154 Msa0032700:intron 40.0%
!! TTTTCTGTGGCTGGTTATGT+GGG - chr1_1:59874136-59874155 Msa0032700:intron 40.0%
AGCTTCTACAAAATCACGGT+TGG + chr1_1:59874266-59874285 None:intergenic 40.0%
CAGCTCCTTCTTCAAATCTA+TGG + chr1_1:59875052-59875071 None:intergenic 40.0%
ATGGACTCTTCCGTATCATT+TGG + chr1_1:59875104-59875123 None:intergenic 40.0%
ATGATACGGAAGAGTCCATA+TGG - chr1_1:59875105-59875124 Msa0032700:intron 40.0%
CTGTGTGAAGCTCAACTATA+TGG - chr1_1:59875134-59875153 Msa0032700:intron 40.0%
TGAAGCTCAACTATATGGTG+TGG - chr1_1:59875139-59875158 Msa0032700:intron 40.0%
AGCAAGAAAGCGATATCTTG+AGG - chr1_1:59875166-59875185 Msa0032700:intron 40.0%
!! TGGGCTTTATTACGAATCTC+AGG - chr1_1:59875551-59875570 Msa0032700:intron 40.0%
GATGTCAAGATTGGAGTAAC+TGG + chr1_1:59875620-59875639 None:intergenic 40.0%
CTGCTTGCAAATCTCCTTAT+GGG - chr1_1:59876000-59876019 Msa0032700:CDS 40.0%
TTCACTGTCTTTGCCGAAAT+TGG - chr1_1:59876153-59876172 Msa0032700:CDS 40.0%
GAATGGTGAAGAAAGGAAGG+GGG + chr1_1:59873633-59873652 None:intergenic 45.0%
GGAATGGTGAAGAAAGGAAG+GGG + chr1_1:59873634-59873653 None:intergenic 45.0%
GGGAATGGTGAAGAAAGGAA+GGG + chr1_1:59873635-59873654 None:intergenic 45.0%
TGGGAATGGTGAAGAAAGGA+AGG + chr1_1:59873636-59873655 None:intergenic 45.0%
CTCTTCCTTCCTTCTGTTTC+CGG - chr1_1:59873719-59873738 Msa0032700:three_prime_UTR 45.0%
TCCTCGTCGAATTGCAAGAA+GGG + chr1_1:59873795-59873814 None:intergenic 45.0%
TTCCTCGTCGAATTGCAAGA+AGG + chr1_1:59873796-59873815 None:intergenic 45.0%
AGGAATGTCTCTCTTCAGAC+AGG - chr1_1:59873811-59873830 Msa0032700:CDS 45.0%
!!! TGATGTTTTGGGGTCTGTTG+TGG - chr1_1:59873908-59873927 Msa0032700:intron 45.0%
GGGTCTCTCACTTTACTACT+TGG - chr1_1:59874084-59874103 Msa0032700:intron 45.0%
ATGCGGGCTTCTTAGAAGTT+AGG - chr1_1:59874915-59874934 Msa0032700:intron 45.0%
AAGAAGGAGCTGAGCAGTTT+CGG - chr1_1:59875060-59875079 Msa0032700:intron 45.0%
!! TTTAGGTTGGCAGAGATCCA+AGG - chr1_1:59875274-59875293 Msa0032700:intron 45.0%
! GATTTACCCGTGTAGCTTGT+AGG - chr1_1:59875477-59875496 Msa0032700:intron 45.0%
AATGCACCTACAAGCTACAC+GGG + chr1_1:59875486-59875505 None:intergenic 45.0%
GAATGCACCTACAAGCTACA+CGG + chr1_1:59875487-59875506 None:intergenic 45.0%
TACACAAATGGCGACACTCA+TGG - chr1_1:59875725-59875744 Msa0032700:intron 45.0%
GCTGCTTGCAAATCTCCTTA+TGG - chr1_1:59875999-59876018 Msa0032700:CDS 45.0%
GCAAATCTCCTTATGGGCAA+AGG - chr1_1:59876006-59876025 Msa0032700:CDS 45.0%
GCACATGCATTCTTTGATGC+AGG - chr1_1:59876099-59876118 Msa0032700:intron 45.0%
! GTAACAAGCATCGTAGCCCA+GGG + chr1_1:59873525-59873544 None:intergenic 50.0%
!! TGGTGGTGGGTTTAAGGTTG+TGG + chr1_1:59873598-59873617 None:intergenic 50.0%
!! AGGTAGTGGTGGTGGGTTTA+AGG + chr1_1:59873604-59873623 None:intergenic 50.0%
! GAGAGTAAGGTAGTGGTGGT+GGG + chr1_1:59873611-59873630 None:intergenic 50.0%
AGAAAGGAAGGGGGAGAGTA+AGG + chr1_1:59873624-59873643 None:intergenic 50.0%
GGATTGGAGCAAAAGATGGG+TGG + chr1_1:59873680-59873699 None:intergenic 50.0%
AGATGCCGGAAACAGAAGGA+AGG + chr1_1:59873727-59873746 None:intergenic 50.0%
TTCCTTCTGTTTCCGGCATC+TGG - chr1_1:59873726-59873745 Msa0032700:three_prime_UTR 50.0%
TCCTTCTGTTTCCGGCATCT+GGG - chr1_1:59873727-59873746 Msa0032700:three_prime_UTR 50.0%
ATCCTCGTCAAAAGGCCTGT+AGG - chr1_1:59873955-59873974 Msa0032700:CDS 50.0%
! AACCTACAGGCCTTTTGACG+AGG + chr1_1:59873960-59873979 None:intergenic 50.0%
AGACCCCTTTGCCAAAGATC+TGG + chr1_1:59874070-59874089 None:intergenic 50.0%
AGATCCAAGGCCTGTCATGA+GGG - chr1_1:59875287-59875306 Msa0032700:intron 50.0%
TCGGCAAAGACAGTGAACCT+TGG + chr1_1:59876150-59876169 None:intergenic 50.0%
! GGTAACAAGCATCGTAGCCC+AGG + chr1_1:59873526-59873545 None:intergenic 55.0%
GCATGGACTTAGTGGAAGCG+CGG + chr1_1:59873568-59873587 None:intergenic 55.0%
! GGAGAGTAAGGTAGTGGTGG+TGG + chr1_1:59873612-59873631 None:intergenic 55.0%
GAAGGGGGAGAGTAAGGTAG+TGG + chr1_1:59873618-59873637 None:intergenic 55.0%
TCCCAGATGCCGGAAACAGA+AGG + chr1_1:59873731-59873750 None:intergenic 55.0%
GCCCTTCTTGCAATTCGACG+AGG - chr1_1:59873791-59873810 Msa0032700:CDS 55.0%
GAGATCCAAGGCCTGTCATG+AGG - chr1_1:59875286-59875305 Msa0032700:intron 55.0%
GTTTCCCTCATGACAGGCCT+TGG + chr1_1:59875294-59875313 None:intergenic 55.0%
!! GGATGGTGGGGATCCTGAAA+AGG - chr1_1:59875329-59875348 Msa0032700:intron 55.0%
! GGGGGAGAGTAAGGTAGTGG+TGG + chr1_1:59873615-59873634 None:intergenic 60.0%
! GTTGTTATTGCCGCTGCCGC+CGG + chr1_1:59873762-59873781 None:intergenic 60.0%
! GGTGATGGCGTCCCAGATGC+CGG + chr1_1:59873741-59873760 None:intergenic 65.0%
! GGCATCTGGGACGCCATCAC+CGG - chr1_1:59873740-59873759 Msa0032700:three_prime_UTR 65.0%
! ATCTGGGACGCCATCACCGG+CGG - chr1_1:59873743-59873762 Msa0032700:three_prime_UTR 65.0%
ATTGCCGCTGCCGCCGGTGA+TGG + chr1_1:59873756-59873775 None:intergenic 70.0%
GACGCCATCACCGGCGGCAG+CGG - chr1_1:59873749-59873768 Msa0032700:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59873522 59876438 59873522 ID=Msa0032700;Name=Msa0032700
chr1_1 mRNA 59873522 59876438 59873522 ID=Msa0032700-mRNA-1;Parent=Msa0032700;Name=Msa0032700-mRNA-1;_AED=0.21;_eAED=0.21;_QI=62|0.83|0.85|1|1|1|7|251|266
chr1_1 exon 59873522 59873839 59873522 ID=Msa0032700-mRNA-1:exon:18630;Parent=Msa0032700-mRNA-1
chr1_1 exon 59873933 59873994 59873933 ID=Msa0032700-mRNA-1:exon:18629;Parent=Msa0032700-mRNA-1
chr1_1 exon 59874388 59874468 59874388 ID=Msa0032700-mRNA-1:exon:18628;Parent=Msa0032700-mRNA-1
chr1_1 exon 59874610 59874681 59874610 ID=Msa0032700-mRNA-1:exon:18627;Parent=Msa0032700-mRNA-1
chr1_1 exon 59874773 59874905 59874773 ID=Msa0032700-mRNA-1:exon:18626;Parent=Msa0032700-mRNA-1
chr1_1 exon 59875918 59876054 59875918 ID=Msa0032700-mRNA-1:exon:18625;Parent=Msa0032700-mRNA-1
chr1_1 exon 59876128 59876438 59876128 ID=Msa0032700-mRNA-1:exon:18624;Parent=Msa0032700-mRNA-1
chr1_1 five_prime_UTR 59876377 59876438 59876377 ID=Msa0032700-mRNA-1:five_prime_utr;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59876128 59876376 59876128 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59875918 59876054 59875918 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59874773 59874905 59874773 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59874610 59874681 59874610 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59874388 59874468 59874388 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59873933 59873994 59873933 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 CDS 59873773 59873839 59873773 ID=Msa0032700-mRNA-1:cds;Parent=Msa0032700-mRNA-1
chr1_1 three_prime_UTR 59873522 59873772 59873522 ID=Msa0032700-mRNA-1:three_prime_utr;Parent=Msa0032700-mRNA-1
Gene Sequence

>Msa0032700

ATGCCAATTATCCACAACCTTAAACCCACCACCACTACCTTACTCTCCCCCTTCCTTTCTTCACCATTCCCATCATCATCATCATCTTTCAAACCACCCATCTTTTGCTCCAATCCTTCAAATCTCTCTCGAAGACTCTTCCTTCCTTCTGTTTCCGGCATCTGGGACGCCATCACCGGCGGCAGCGGCAATAACAACACCAATGAAGCCCTTCTTGCAATTCGACGAGGAATGTCTCTCTTCAGACAGGGTGATGTTTTGGGGTCTGTTGTGGAGTTTGATAAAGCAATTGAATTGGATCCTCGTCAAAAGGCCTGTAGGTTTATTCGTTTTTCCGAACTTTCGTCAATATCAATTGAATTTGGAATTGGAATTGGAATTGGAATATTTGAAGAAGGAGCTGAGCAGTTTCGGTTAGACGTTGCTCAAAATCCAAATGATACGGAAGAGTCCATATGGTGTTTTCTGTGTGAAGCTCAACTATATGGTGTGGATGAAGCAAGAAAGCGATATCTTGAGGTTGGCAGAGATCCAAGGCCTGTCATGAGGGAAACATATAACATGTTTAAGGATGGTGGGGATCCTGAAAAGCTTGTAGGTGCATTCTCCAATAGCAGAGAAAGCGATTATTTTTATGCTTCGCTATATGCTGGGCTTTATTACGAATCTCAGAATGAAAATGATGCTGCAAAAGTTCATATAGTTGCTGCTTGCAAATCTCCTTATGGGCAAAGGTCTGATGATTATATGGCTTCTCTTTCCAAGGTTCACTGTCTTTGCCGAAATTGGAACTTCAGCTGA

Protein sequence

>Msa0032700

MPIIHNLKPTTTTLLSPFLSSPFPSSSSSFKPPIFCSNPSNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGDVLGSVVEFDKAIELDPRQKACRFIRFSELSSISIEFGIGIGIGIFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNENDAAKVHIVAACKSPYGQRSDDYMASLSKVHCLCRNWNFS*