AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420100 MtrunA17_Chr3g0118801 94.009 217 13 0 1 217 1 217 6.61e-147 408
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420100 AT2G21530.1 59.231 130 52 1 82 211 81 209 9.71e-51 164

Find 51 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTCTTGTTATAGATT+TGG 0.263843 3_2:-68371333 Msa0420100:CDS
TTTAATGCATGATGAGATAT+TGG 0.293541 3_2:+68372457 None:intergenic
TCTGGGAGTTATATTACTTT+TGG 0.301923 3_2:-68371245 Msa0420100:intron
ATATCTCATCATGCATTAAA+TGG 0.304957 3_2:-68372454 Msa0420100:five_prime_UTR
AATGCCAGGGGACACTAATT+TGG 0.313943 3_2:-68371018 Msa0420100:intron
CAATATGCTTTGTATCAAAA+TGG 0.318784 3_2:+68370822 None:intergenic
ACTTCTATACCTGTTGCAAC+TGG 0.344018 3_2:+68371550 None:intergenic
CCATTGTCTAGTTCACCTTC+TGG 0.345009 3_2:+68370942 None:intergenic
GCAGAACATGTTTGAGACTT+TGG 0.358567 3_2:+68372226 None:intergenic
GTAGTTACCACTGTATCTTC+TGG 0.366490 3_2:-68371263 Msa0420100:CDS
CTTTGTGTAGCATTAGTTGT+TGG 0.401469 3_2:+68372028 None:intergenic
ATGAATAATTAAGTTACTCT+TGG 0.427390 3_2:+68372385 None:intergenic
GCATTGGAGTGTAATAAAAT+TGG 0.429187 3_2:+68372187 None:intergenic
TAATACTCTAGCAACAATAA+TGG 0.429297 3_2:-68372284 Msa0420100:exon
TTGCTAGAGTATTATTAGCT+TGG 0.439298 3_2:+68372293 None:intergenic
ATCACTAAATCAGCTTTCTC+TGG 0.443107 3_2:+68371574 None:intergenic
GCTCATAGAAGCTAGCTTTG+TGG 0.448094 3_2:+68372345 None:intergenic
TTGATGCATGTATAGCTCCT+AGG 0.449624 3_2:+68372062 None:intergenic
TCAATTGTCACTTGTTTATG+TGG 0.455268 3_2:+68372428 None:intergenic
TTAGTGATCCCAGTTGCAAC+AGG 0.462387 3_2:-68371559 Msa0420100:intron
TTCAAGGCATATAGGCTTCA+AGG 0.462486 3_2:-68371729 Msa0420100:CDS
GATGGTGATTCAAGGCATAT+AGG 0.467110 3_2:-68371737 Msa0420100:CDS
AGCACCAATGGAACATTCAT+TGG 0.469041 3_2:-68371308 Msa0420100:CDS
GAACATTCATTGGTGACAAA+AGG 0.471831 3_2:-68371298 Msa0420100:CDS
TAGTTACCACTGTATCTTCT+GGG 0.476442 3_2:-68371262 Msa0420100:CDS
CAACTAATGCTACACAAAGA+TGG 0.490326 3_2:-68372024 Msa0420100:CDS
AGAAGCTAGCTTTGTGGTGT+TGG 0.490807 3_2:+68372351 None:intergenic
TGATAGGAGATGGTGATTCA+AGG 0.491582 3_2:-68371745 Msa0420100:intron
TAAGTTACTCTTGGTTGCGT+AGG 0.500424 3_2:+68372394 None:intergenic
ACTCTTGGTTGCGTAGGTCA+TGG 0.502974 3_2:+68372400 None:intergenic
GAAAGTTACTGAAGTGGCAT+TGG 0.511446 3_2:+68372171 None:intergenic
GTCACCAATGAATGTTCCAT+TGG 0.522297 3_2:+68371304 None:intergenic
GAGAAGGCTGCAGATACAGT+TGG 0.528528 3_2:-68370969 Msa0420100:CDS
GGTGACAAAAGGCTGAAACC+TGG 0.545814 3_2:-68371287 Msa0420100:CDS
AGATGGATTCTTGAACCAGT+TGG 0.550406 3_2:-68372007 Msa0420100:intron
ATAGATTTGGATAGCACCAA+TGG 0.560750 3_2:-68371320 Msa0420100:CDS
GGCTTCAAGGTTGAGAGACC+AGG 0.565164 3_2:-68371716 Msa0420100:CDS
GATACAGTGGTAACTACTCC+AGG 0.567838 3_2:+68371269 None:intergenic
TGTTATACATCCCAAATCAC+AGG 0.568456 3_2:-68372095 Msa0420100:CDS
CTTCTATACCTGTTGCAACT+GGG 0.577256 3_2:+68371551 None:intergenic
CAGGTGTGCATGCACGCATT+CGG 0.581165 3_2:-68371367 Msa0420100:CDS
TGTGTCGAAAATAGAAGAGA+AGG 0.593642 3_2:-68370985 Msa0420100:CDS
TGTAGCATTAGTTGTTGGAG+TGG 0.594055 3_2:+68372033 None:intergenic
ACTCTAGCAACAATAATGGA+AGG 0.614859 3_2:-68372280 Msa0420100:exon
ATCTAGAATGAAGTCACTGT+AGG 0.636581 3_2:-68371604 Msa0420100:intron
TGAACTGAAAGTTACTGAAG+TGG 0.650521 3_2:+68372165 None:intergenic
GATACAGTTGGAGAACCAGA+AGG 0.670779 3_2:-68370957 Msa0420100:CDS
GAAGTAATTTCATAAGCACC+TGG 0.674584 3_2:+68371698 None:intergenic
TTGGGATGTATAACACGACC+TGG 0.687791 3_2:+68372103 None:intergenic
ATAACTCCCAGAAGATACAG+TGG 0.690459 3_2:+68371256 None:intergenic
CCAGAAGGTGAACTAGACAA+TGG 0.701962 3_2:-68370942 Msa0420100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTAACAATTTTTCAAT+TGG + chr3_2:68371282-68371301 None:intergenic 15.0%
!! TTTAAGTATTTGTTTCAATA+TGG - chr3_2:68371411-68371430 Msa0420100:intron 15.0%
!!! GATTTTAACAATTTTTCAAT+TGG + chr3_2:68371282-68371301 None:intergenic 15.0%
!! TTTAAGTATTTGTTTCAATA+TGG - chr3_2:68371411-68371430 Msa0420100:intron 15.0%
!! ATGAATAATTAAGTTACTCT+TGG + chr3_2:68370846-68370865 None:intergenic 20.0%
!! TATTTGTAGTAATATCATGA+AGG + chr3_2:68371369-68371388 None:intergenic 20.0%
!! TTCATGATATTACTACAAAT+AGG - chr3_2:68371368-68371387 Msa0420100:CDS 20.0%
!! TGAAACAAATACTTAAAAAG+TGG + chr3_2:68371408-68371427 None:intergenic 20.0%
!! TTTGTAACTGTAAGAAAAAT+AGG + chr3_2:68371735-68371754 None:intergenic 20.0%
!! ACATAATTATTCAACAGAAA+AGG + chr3_2:68372046-68372065 None:intergenic 20.0%
!!! TATCATTTTGAAATTCTCTT+AGG + chr3_2:68372138-68372157 None:intergenic 20.0%
!! ATGAATAATTAAGTTACTCT+TGG + chr3_2:68370846-68370865 None:intergenic 20.0%
!! TATTTGTAGTAATATCATGA+AGG + chr3_2:68371369-68371388 None:intergenic 20.0%
!! TTCATGATATTACTACAAAT+AGG - chr3_2:68371368-68371387 Msa0420100:CDS 20.0%
!! TGAAACAAATACTTAAAAAG+TGG + chr3_2:68371408-68371427 None:intergenic 20.0%
!! TTTGTAACTGTAAGAAAAAT+AGG + chr3_2:68371735-68371754 None:intergenic 20.0%
!! ACATAATTATTCAACAGAAA+AGG + chr3_2:68372046-68372065 None:intergenic 20.0%
!!! TATCATTTTGAAATTCTCTT+AGG + chr3_2:68372138-68372157 None:intergenic 20.0%
! TTTAATGCATGATGAGATAT+TGG + chr3_2:68370774-68370793 None:intergenic 25.0%
! ATATCTCATCATGCATTAAA+TGG - chr3_2:68370774-68370793 Msa0420100:three_prime_UTR 25.0%
! TAATACTCTAGCAACAATAA+TGG - chr3_2:68370944-68370963 Msa0420100:CDS 25.0%
! CTCAATCAAGATAAGAAAAA+TGG + chr3_2:68371328-68371347 None:intergenic 25.0%
! CTTAAAAAGTGGTTAATTGA+GGG + chr3_2:68371397-68371416 None:intergenic 25.0%
! ACTTAAAAAGTGGTTAATTG+AGG + chr3_2:68371398-68371417 None:intergenic 25.0%
! CAATATGGTCAATATTAACA+AGG - chr3_2:68371426-68371445 Msa0420100:intron 25.0%
!!! ACAAAACCAATCATTTTGAT+AGG - chr3_2:68371467-68371486 Msa0420100:intron 25.0%
! AGCATAGTACATTAAGATTA+AGG + chr3_2:68371781-68371800 None:intergenic 25.0%
! CAAATTATATTGTGATTCTC+TGG + chr3_2:68371815-68371834 None:intergenic 25.0%
!! CAATCTTCTTGTTATAGATT+TGG - chr3_2:68371895-68371914 Msa0420100:intron 25.0%
! TTGAAATTCTCTTAGGAATA+TGG + chr3_2:68372131-68372150 None:intergenic 25.0%
! ATAATAGCAGAGGTTAAATA+TGG + chr3_2:68372189-68372208 None:intergenic 25.0%
! CAATATGCTTTGTATCAAAA+TGG + chr3_2:68372409-68372428 None:intergenic 25.0%
! TTTAATGCATGATGAGATAT+TGG + chr3_2:68370774-68370793 None:intergenic 25.0%
! ATATCTCATCATGCATTAAA+TGG - chr3_2:68370774-68370793 Msa0420100:three_prime_UTR 25.0%
! TAATACTCTAGCAACAATAA+TGG - chr3_2:68370944-68370963 Msa0420100:CDS 25.0%
! CTCAATCAAGATAAGAAAAA+TGG + chr3_2:68371328-68371347 None:intergenic 25.0%
! CTTAAAAAGTGGTTAATTGA+GGG + chr3_2:68371397-68371416 None:intergenic 25.0%
! ACTTAAAAAGTGGTTAATTG+AGG + chr3_2:68371398-68371417 None:intergenic 25.0%
! CAATATGGTCAATATTAACA+AGG - chr3_2:68371426-68371445 Msa0420100:intron 25.0%
!!! ACAAAACCAATCATTTTGAT+AGG - chr3_2:68371467-68371486 Msa0420100:intron 25.0%
! AGCATAGTACATTAAGATTA+AGG + chr3_2:68371781-68371800 None:intergenic 25.0%
! CAAATTATATTGTGATTCTC+TGG + chr3_2:68371815-68371834 None:intergenic 25.0%
!! CAATCTTCTTGTTATAGATT+TGG - chr3_2:68371895-68371914 Msa0420100:intron 25.0%
! TTGAAATTCTCTTAGGAATA+TGG + chr3_2:68372131-68372150 None:intergenic 25.0%
! ATAATAGCAGAGGTTAAATA+TGG + chr3_2:68372189-68372208 None:intergenic 25.0%
! CAATATGCTTTGTATCAAAA+TGG + chr3_2:68372409-68372428 None:intergenic 25.0%
! TCAATTGTCACTTGTTTATG+TGG + chr3_2:68370803-68370822 None:intergenic 30.0%
! TTGCTAGAGTATTATTAGCT+TGG + chr3_2:68370938-68370957 None:intergenic 30.0%
!!! GAGACTTTGGAATTTTTGTT+AGG + chr3_2:68370992-68371011 None:intergenic 30.0%
GCATTGGAGTGTAATAAAAT+TGG + chr3_2:68371044-68371063 None:intergenic 30.0%
!!! TTCACTTTTTCCTGTGATTT+GGG + chr3_2:68371146-68371165 None:intergenic 30.0%
!! AACAAGGTGTTTTATCACTT+TGG - chr3_2:68371442-68371461 Msa0420100:intron 30.0%
! ATCAGAATCAATGATTTGTG+TGG - chr3_2:68371563-68371582 Msa0420100:CDS 30.0%
! TGTTTTGTATTTACAGTGTC+AGG - chr3_2:68371842-68371861 Msa0420100:intron 30.0%
! TCTGGGAGTTATATTACTTT+TGG - chr3_2:68371983-68372002 Msa0420100:intron 30.0%
TATATAACCCTGTTTGTAGA+AGG - chr3_2:68372092-68372111 Msa0420100:CDS 30.0%
TTAAGATCCTTCTACAAACA+GGG + chr3_2:68372102-68372121 None:intergenic 30.0%
! TTTAAGATCCTTCTACAAAC+AGG + chr3_2:68372103-68372122 None:intergenic 30.0%
CAGAGGTTAAATATGGAATA+GGG + chr3_2:68372182-68372201 None:intergenic 30.0%
! TCAATTGTCACTTGTTTATG+TGG + chr3_2:68370803-68370822 None:intergenic 30.0%
! TTGCTAGAGTATTATTAGCT+TGG + chr3_2:68370938-68370957 None:intergenic 30.0%
!!! GAGACTTTGGAATTTTTGTT+AGG + chr3_2:68370992-68371011 None:intergenic 30.0%
GCATTGGAGTGTAATAAAAT+TGG + chr3_2:68371044-68371063 None:intergenic 30.0%
!!! TTCACTTTTTCCTGTGATTT+GGG + chr3_2:68371146-68371165 None:intergenic 30.0%
!! AACAAGGTGTTTTATCACTT+TGG - chr3_2:68371442-68371461 Msa0420100:intron 30.0%
! ATCAGAATCAATGATTTGTG+TGG - chr3_2:68371563-68371582 Msa0420100:CDS 30.0%
! TGTTTTGTATTTACAGTGTC+AGG - chr3_2:68371842-68371861 Msa0420100:intron 30.0%
! TCTGGGAGTTATATTACTTT+TGG - chr3_2:68371983-68372002 Msa0420100:intron 30.0%
TATATAACCCTGTTTGTAGA+AGG - chr3_2:68372092-68372111 Msa0420100:CDS 30.0%
TTAAGATCCTTCTACAAACA+GGG + chr3_2:68372102-68372121 None:intergenic 30.0%
! TTTAAGATCCTTCTACAAAC+AGG + chr3_2:68372103-68372122 None:intergenic 30.0%
CAGAGGTTAAATATGGAATA+GGG + chr3_2:68372182-68372201 None:intergenic 30.0%
! ACTCTAGCAACAATAATGGA+AGG - chr3_2:68370948-68370967 Msa0420100:CDS 35.0%
TGAACTGAAAGTTACTGAAG+TGG + chr3_2:68371066-68371085 None:intergenic 35.0%
TGTTATACATCCCAAATCAC+AGG - chr3_2:68371133-68371152 Msa0420100:intron 35.0%
!!! GTTCACTTTTTCCTGTGATT+TGG + chr3_2:68371147-68371166 None:intergenic 35.0%
CTTTGTGTAGCATTAGTTGT+TGG + chr3_2:68371203-68371222 None:intergenic 35.0%
CAACTAATGCTACACAAAGA+TGG - chr3_2:68371204-68371223 Msa0420100:intron 35.0%
! AGAAAGTGTAACTAACCAAC+TGG + chr3_2:68371239-68371258 None:intergenic 35.0%
CCATCTCCTATCAAAATGAT+TGG + chr3_2:68371476-68371495 None:intergenic 35.0%
!! CCAATCATTTTGATAGGAGA+TGG - chr3_2:68371473-68371492 Msa0420100:intron 35.0%
GAAGTAATTTCATAAGCACC+TGG + chr3_2:68371533-68371552 None:intergenic 35.0%
! ATCTAGAATGAAGTCACTGT+AGG - chr3_2:68371624-68371643 Msa0420100:intron 35.0%
ATCACTAAATCAGCTTTCTC+TGG + chr3_2:68371657-68371676 None:intergenic 35.0%
GATTAAGGAGCTTATTTCAG+TGG + chr3_2:68371766-68371785 None:intergenic 35.0%
ATAGATTTGGATAGCACCAA+TGG - chr3_2:68371908-68371927 Msa0420100:intron 35.0%
! GAACATTCATTGGTGACAAA+AGG - chr3_2:68371930-68371949 Msa0420100:intron 35.0%
TAGTTACCACTGTATCTTCT+GGG - chr3_2:68371966-68371985 Msa0420100:intron 35.0%
GCAGAGGTTAAATATGGAAT+AGG + chr3_2:68372183-68372202 None:intergenic 35.0%
! TCTCTTCTATTTTCGACACA+CGG + chr3_2:68372243-68372262 None:intergenic 35.0%
TGTGTCGAAAATAGAAGAGA+AGG - chr3_2:68372243-68372262 Msa0420100:CDS 35.0%
! ACTCTAGCAACAATAATGGA+AGG - chr3_2:68370948-68370967 Msa0420100:CDS 35.0%
TGAACTGAAAGTTACTGAAG+TGG + chr3_2:68371066-68371085 None:intergenic 35.0%
TGTTATACATCCCAAATCAC+AGG - chr3_2:68371133-68371152 Msa0420100:intron 35.0%
!!! GTTCACTTTTTCCTGTGATT+TGG + chr3_2:68371147-68371166 None:intergenic 35.0%
CTTTGTGTAGCATTAGTTGT+TGG + chr3_2:68371203-68371222 None:intergenic 35.0%
CAACTAATGCTACACAAAGA+TGG - chr3_2:68371204-68371223 Msa0420100:intron 35.0%
! AGAAAGTGTAACTAACCAAC+TGG + chr3_2:68371239-68371258 None:intergenic 35.0%
CCATCTCCTATCAAAATGAT+TGG + chr3_2:68371476-68371495 None:intergenic 35.0%
!! CCAATCATTTTGATAGGAGA+TGG - chr3_2:68371473-68371492 Msa0420100:intron 35.0%
GAAGTAATTTCATAAGCACC+TGG + chr3_2:68371533-68371552 None:intergenic 35.0%
! ATCTAGAATGAAGTCACTGT+AGG - chr3_2:68371624-68371643 Msa0420100:intron 35.0%
ATCACTAAATCAGCTTTCTC+TGG + chr3_2:68371657-68371676 None:intergenic 35.0%
GATTAAGGAGCTTATTTCAG+TGG + chr3_2:68371766-68371785 None:intergenic 35.0%
ATAGATTTGGATAGCACCAA+TGG - chr3_2:68371908-68371927 Msa0420100:intron 35.0%
! GAACATTCATTGGTGACAAA+AGG - chr3_2:68371930-68371949 Msa0420100:intron 35.0%
TAGTTACCACTGTATCTTCT+GGG - chr3_2:68371966-68371985 Msa0420100:intron 35.0%
GCAGAGGTTAAATATGGAAT+AGG + chr3_2:68372183-68372202 None:intergenic 35.0%
! TCTCTTCTATTTTCGACACA+CGG + chr3_2:68372243-68372262 None:intergenic 35.0%
TGTGTCGAAAATAGAAGAGA+AGG - chr3_2:68372243-68372262 Msa0420100:CDS 35.0%
TAAGTTACTCTTGGTTGCGT+AGG + chr3_2:68370837-68370856 None:intergenic 40.0%
! GCAGAACATGTTTGAGACTT+TGG + chr3_2:68371005-68371024 None:intergenic 40.0%
GAAAGTTACTGAAGTGGCAT+TGG + chr3_2:68371060-68371079 None:intergenic 40.0%
!!! TGCTTTCTTTTTCAGCAACC+AGG - chr3_2:68371107-68371126 Msa0420100:intron 40.0%
TCACAGGAAAAAGTGAACCT+AGG - chr3_2:68371149-68371168 Msa0420100:intron 40.0%
TTGATGCATGTATAGCTCCT+AGG + chr3_2:68371169-68371188 None:intergenic 40.0%
TGTAGCATTAGTTGTTGGAG+TGG + chr3_2:68371198-68371217 None:intergenic 40.0%
! AGATGGATTCTTGAACCAGT+TGG - chr3_2:68371221-68371240 Msa0420100:intron 40.0%
TGATAGGAGATGGTGATTCA+AGG - chr3_2:68371483-68371502 Msa0420100:intron 40.0%
GATGGTGATTCAAGGCATAT+AGG - chr3_2:68371491-68371510 Msa0420100:intron 40.0%
TTCAAGGCATATAGGCTTCA+AGG - chr3_2:68371499-68371518 Msa0420100:intron 40.0%
CTTCTATACCTGTTGCAACT+GGG + chr3_2:68371680-68371699 None:intergenic 40.0%
ACTTCTATACCTGTTGCAAC+TGG + chr3_2:68371681-68371700 None:intergenic 40.0%
AGCACCAATGGAACATTCAT+TGG - chr3_2:68371920-68371939 Msa0420100:intron 40.0%
GTCACCAATGAATGTTCCAT+TGG + chr3_2:68371927-68371946 None:intergenic 40.0%
GTAGTTACCACTGTATCTTC+TGG - chr3_2:68371965-68371984 Msa0420100:intron 40.0%
ATAACTCCCAGAAGATACAG+TGG + chr3_2:68371975-68371994 None:intergenic 40.0%
CTCTGCTATTATGAATGCCA+GGG - chr3_2:68372197-68372216 Msa0420100:CDS 40.0%
TCTGCTATTATGAATGCCAG+GGG - chr3_2:68372198-68372217 Msa0420100:CDS 40.0%
TAAGTTACTCTTGGTTGCGT+AGG + chr3_2:68370837-68370856 None:intergenic 40.0%
! GCAGAACATGTTTGAGACTT+TGG + chr3_2:68371005-68371024 None:intergenic 40.0%
GAAAGTTACTGAAGTGGCAT+TGG + chr3_2:68371060-68371079 None:intergenic 40.0%
!!! TGCTTTCTTTTTCAGCAACC+AGG - chr3_2:68371107-68371126 Msa0420100:intron 40.0%
TCACAGGAAAAAGTGAACCT+AGG - chr3_2:68371149-68371168 Msa0420100:intron 40.0%
TTGATGCATGTATAGCTCCT+AGG + chr3_2:68371169-68371188 None:intergenic 40.0%
TGTAGCATTAGTTGTTGGAG+TGG + chr3_2:68371198-68371217 None:intergenic 40.0%
! AGATGGATTCTTGAACCAGT+TGG - chr3_2:68371221-68371240 Msa0420100:intron 40.0%
TGATAGGAGATGGTGATTCA+AGG - chr3_2:68371483-68371502 Msa0420100:intron 40.0%
GATGGTGATTCAAGGCATAT+AGG - chr3_2:68371491-68371510 Msa0420100:intron 40.0%
TTCAAGGCATATAGGCTTCA+AGG - chr3_2:68371499-68371518 Msa0420100:intron 40.0%
CTTCTATACCTGTTGCAACT+GGG + chr3_2:68371680-68371699 None:intergenic 40.0%
ACTTCTATACCTGTTGCAAC+TGG + chr3_2:68371681-68371700 None:intergenic 40.0%
AGCACCAATGGAACATTCAT+TGG - chr3_2:68371920-68371939 Msa0420100:intron 40.0%
GTCACCAATGAATGTTCCAT+TGG + chr3_2:68371927-68371946 None:intergenic 40.0%
GTAGTTACCACTGTATCTTC+TGG - chr3_2:68371965-68371984 Msa0420100:intron 40.0%
ATAACTCCCAGAAGATACAG+TGG + chr3_2:68371975-68371994 None:intergenic 40.0%
CTCTGCTATTATGAATGCCA+GGG - chr3_2:68372197-68372216 Msa0420100:CDS 40.0%
TCTGCTATTATGAATGCCAG+GGG - chr3_2:68372198-68372217 Msa0420100:CDS 40.0%
!! AGAAGCTAGCTTTGTGGTGT+TGG + chr3_2:68370880-68370899 None:intergenic 45.0%
!! GCTCATAGAAGCTAGCTTTG+TGG + chr3_2:68370886-68370905 None:intergenic 45.0%
TTGGGATGTATAACACGACC+TGG + chr3_2:68371128-68371147 None:intergenic 45.0%
TTAGTGATCCCAGTTGCAAC+AGG - chr3_2:68371669-68371688 Msa0420100:intron 45.0%
GATACAGTGGTAACTACTCC+AGG + chr3_2:68371962-68371981 None:intergenic 45.0%
CCTGGCATTCATAATAGCAG+AGG + chr3_2:68372199-68372218 None:intergenic 45.0%
CCTCTGCTATTATGAATGCC+AGG - chr3_2:68372196-68372215 Msa0420100:CDS 45.0%
AATGCCAGGGGACACTAATT+TGG - chr3_2:68372210-68372229 Msa0420100:CDS 45.0%
ATAGCCAAATTAGTGTCCCC+TGG + chr3_2:68372217-68372236 None:intergenic 45.0%
GATACAGTTGGAGAACCAGA+AGG - chr3_2:68372271-68372290 Msa0420100:exon 45.0%
! CCATTGTCTAGTTCACCTTC+TGG + chr3_2:68372289-68372308 None:intergenic 45.0%
CCAGAAGGTGAACTAGACAA+TGG - chr3_2:68372286-68372305 Msa0420100:exon 45.0%
!! AGAAGCTAGCTTTGTGGTGT+TGG + chr3_2:68370880-68370899 None:intergenic 45.0%
!! GCTCATAGAAGCTAGCTTTG+TGG + chr3_2:68370886-68370905 None:intergenic 45.0%
TTGGGATGTATAACACGACC+TGG + chr3_2:68371128-68371147 None:intergenic 45.0%
TTAGTGATCCCAGTTGCAAC+AGG - chr3_2:68371669-68371688 Msa0420100:intron 45.0%
GATACAGTGGTAACTACTCC+AGG + chr3_2:68371962-68371981 None:intergenic 45.0%
CCTGGCATTCATAATAGCAG+AGG + chr3_2:68372199-68372218 None:intergenic 45.0%
CCTCTGCTATTATGAATGCC+AGG - chr3_2:68372196-68372215 Msa0420100:CDS 45.0%
AATGCCAGGGGACACTAATT+TGG - chr3_2:68372210-68372229 Msa0420100:CDS 45.0%
ATAGCCAAATTAGTGTCCCC+TGG + chr3_2:68372217-68372236 None:intergenic 45.0%
GATACAGTTGGAGAACCAGA+AGG - chr3_2:68372271-68372290 Msa0420100:exon 45.0%
! CCATTGTCTAGTTCACCTTC+TGG + chr3_2:68372289-68372308 None:intergenic 45.0%
CCAGAAGGTGAACTAGACAA+TGG - chr3_2:68372286-68372305 Msa0420100:exon 45.0%
ACTCTTGGTTGCGTAGGTCA+TGG + chr3_2:68370831-68370850 None:intergenic 50.0%
GGTGACAAAAGGCTGAAACC+TGG - chr3_2:68371941-68371960 Msa0420100:intron 50.0%
GAGAAGGCTGCAGATACAGT+TGG - chr3_2:68372259-68372278 Msa0420100:CDS 50.0%
ACTCTTGGTTGCGTAGGTCA+TGG + chr3_2:68370831-68370850 None:intergenic 50.0%
GGTGACAAAAGGCTGAAACC+TGG - chr3_2:68371941-68371960 Msa0420100:intron 50.0%
GAGAAGGCTGCAGATACAGT+TGG - chr3_2:68372259-68372278 Msa0420100:CDS 50.0%
GGCTTCAAGGTTGAGAGACC+AGG - chr3_2:68371512-68371531 Msa0420100:intron 55.0%
CAGGTGTGCATGCACGCATT+CGG - chr3_2:68371861-68371880 Msa0420100:intron 55.0%
GGCTTCAAGGTTGAGAGACC+AGG - chr3_2:68371512-68371531 Msa0420100:intron 55.0%
CAGGTGTGCATGCACGCATT+CGG - chr3_2:68371861-68371880 Msa0420100:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 68370771 68372479 68370771 ID=Msa0420100;Name=Msa0420100
chr3_2 mRNA 68370771 68372479 68370771 ID=Msa0420100-mRNA-1;Parent=Msa0420100;Name=Msa0420100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=192|1|1|1|1|1|5|128|228
chr3_2 exon 68370771 68371032 68370771 ID=Msa0420100-mRNA-1:exon:16079;Parent=Msa0420100-mRNA-1
chr3_2 exon 68371246 68371392 68371246 ID=Msa0420100-mRNA-1:exon:16078;Parent=Msa0420100-mRNA-1
chr3_2 exon 68371560 68371620 68371560 ID=Msa0420100-mRNA-1:exon:16077;Parent=Msa0420100-mRNA-1
chr3_2 exon 68371697 68371761 68371697 ID=Msa0420100-mRNA-1:exon:16076;Parent=Msa0420100-mRNA-1
chr3_2 exon 68372008 68372479 68372008 ID=Msa0420100-mRNA-1:exon:16075;Parent=Msa0420100-mRNA-1
chr3_2 five_prime_UTR 68372288 68372479 68372288 ID=Msa0420100-mRNA-1:five_prime_utr;Parent=Msa0420100-mRNA-1
chr3_2 CDS 68372008 68372287 68372008 ID=Msa0420100-mRNA-1:cds;Parent=Msa0420100-mRNA-1
chr3_2 CDS 68371697 68371761 68371697 ID=Msa0420100-mRNA-1:cds;Parent=Msa0420100-mRNA-1
chr3_2 CDS 68371560 68371620 68371560 ID=Msa0420100-mRNA-1:cds;Parent=Msa0420100-mRNA-1
chr3_2 CDS 68371246 68371392 68371246 ID=Msa0420100-mRNA-1:cds;Parent=Msa0420100-mRNA-1
chr3_2 CDS 68370899 68371032 68370899 ID=Msa0420100-mRNA-1:cds;Parent=Msa0420100-mRNA-1
chr3_2 three_prime_UTR 68370771 68370898 68370771 ID=Msa0420100-mRNA-1:three_prime_utr;Parent=Msa0420100-mRNA-1
Gene Sequence

>Msa0420100

ATGGAAGGCATTGTAAAATCTCTCTACCTAACAAAAATTCCAAAGTCTCAAACATGTTCTGCTTCTCTGTTGAACTCACCAATTTTATTACACTCCAATGCCACTTCAGTAACTTTCAGTTCAGCAACAAATCATCTGCACAAGTGCTTTCTTTTTCAGCAACCAGGTCGTGTTATACATCCCAAATCACAGGAAAAAGTGAACCTAGGAGCTATACATGCATCAAAAGCTACCACTCCAACAACTAATGCTACACAAAGATGGATTCTTGAACCAGTTGGAGATGGTGATTCAAGGCATATAGGCTTCAAGGTTGAGAGACCAGGTGCTTATGAAATTACTTCTAATGAAGTCACTGTAGGACGTGTTCCAGAGAAAGCTGATTTAGTGATCCCAGTTGCAACAGTGTCAGGTGTGCATGCACGCATTCGGATGAAACAAGACAATCTTCTTGTTATAGATTTGGATAGCACCAATGGAACATTCATTGGTGACAAAAGGCTGAAACCTGGAGTAGTTACCACTGTATCTTCTGGGAGTTATATTACTTTTGGGGACACTAATTTGGCTATGTTCCGTGTGTCGAAAATAGAAGAGAAGGCTGCAGATACAGTTGGAGAACCAGAAGGTGAACTAGACAATGGTGACAAATCTGATAGTACTGAAACAAGTTCAACTTCTAGTTGA

Protein sequence

>Msa0420100

MEGIVKSLYLTKIPKSQTCSASLLNSPILLHSNATSVTFSSATNHLHKCFLFQQPGRVIHPKSQEKVNLGAIHASKATTPTTNATQRWILEPVGDGDSRHIGFKVERPGAYEITSNEVTVGRVPEKADLVIPVATVSGVHARIRMKQDNLLVIDLDSTNGTFIGDKRLKPGVVTTVSSGSYITFGDTNLAMFRVSKIEEKAADTVGEPEGELDNGDKSDSTETSSTSS*