AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0304020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304020 MtrunA17_Chr2g0331271 96.335 191 7 0 1 191 1 191 2.74e-137 381
Msa0304020 MtrunA17_Chr1g0148731 53.846 104 46 2 72 174 60 162 1.55e-24 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304020 AT3G16250.1 64.088 181 52 5 18 186 20 199 3.81e-77 229
Msa0304020 AT4G32590.1 53.846 104 46 2 72 174 70 172 1.86e-25 97.1
Msa0304020 AT4G32590.3 49.074 108 53 2 57 163 55 161 3.64e-19 80.9

Find 74 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGTACATTATTCTTTA+TGG 0.068016 2_3:-61319700 Msa0304020:five_prime_UTR
CATTTCCTCATGTGCTATTT+TGG 0.116905 2_3:+61317799 None:intergenic
ACTCCTCTAAAACTCTAAAA+TGG 0.152772 2_3:+61317496 None:intergenic
CATGCTAATCTCCAATTCTT+TGG 0.246574 2_3:+61318606 None:intergenic
GTCAGAAAGCAACTGATATT+TGG 0.264267 2_3:-61317668 Msa0304020:three_prime_UTR
AGTGCCGACTGCTCTAATTT+TGG 0.281013 2_3:+61319424 None:intergenic
TGCACGTGGCATAACATAAT+TGG 0.309607 2_3:-61317778 Msa0304020:three_prime_UTR
GAGAGACGTGTGAATGCATT+AGG 0.321958 2_3:+61319497 None:intergenic
GACAAATGCAAAACCTATAG+AGG 0.334673 2_3:+61319352 None:intergenic
CCTTGTCCACTACAAGAAAA+TGG 0.347151 2_3:-61318014 Msa0304020:three_prime_UTR
CTTTATAGAAACCAAAGAAT+TGG 0.359961 2_3:-61318617 Msa0304020:intron
TTATCTCATATAATTTGAAT+TGG 0.367948 2_3:+61319671 None:intergenic
GATTCTAACATTGAACTCTA+TGG 0.373731 2_3:-61319101 Msa0304020:CDS
AACTAGTGTTATGTTGTTGA+AGG 0.378823 2_3:+61319568 None:intergenic
TAGGGGTTAGTTTGAGTTGG+AGG 0.393377 2_3:+61319516 None:intergenic
TCTAATGACCCTCCCTCTAT+AGG 0.394740 2_3:-61319365 Msa0304020:CDS
AATCTTGTGCTTCTTGATCC+TGG 0.407919 2_3:-61318069 Msa0304020:three_prime_UTR
CTTGTAAAGAGTGTTGTGTT+TGG 0.421734 2_3:+61319449 None:intergenic
CATTCATGTCCTTTCCACTC+TGG 0.430702 2_3:+61318400 None:intergenic
AGAGACGTGTGAATGCATTA+GGG 0.437849 2_3:+61319498 None:intergenic
TGCACATCTGGTGTTCCATC+TGG 0.437999 2_3:+61319170 None:intergenic
CTCCTCTAAAACTCTAAAAT+GGG 0.446112 2_3:+61317497 None:intergenic
CATTAGGGGTTAGTTTGAGT+TGG 0.450485 2_3:+61319513 None:intergenic
ATTTGCTATTAGGTTCTTGA+AGG 0.451453 2_3:-61318842 Msa0304020:intron
AGGATTCCAACCTTGTACAT+TGG 0.463397 2_3:-61317846 Msa0304020:three_prime_UTR
GATTCTAAGAGCATAATTAT+CGG 0.467437 2_3:-61317730 Msa0304020:three_prime_UTR
GCTGTACGATAATGCACATC+TGG 0.480063 2_3:+61319158 None:intergenic
TATTGTTATTGTAAGATAAG+TGG 0.482367 2_3:-61317522 Msa0304020:three_prime_UTR
GTGGGTGAAGCAGATTCTAC+AGG 0.486617 2_3:-61318573 Msa0304020:CDS
TTATTTCCAATGTACAAGGT+TGG 0.502984 2_3:+61317840 None:intergenic
CTATTAGGTTCTTGAAGGCA+AGG 0.503895 2_3:-61318837 Msa0304020:intron
GAAGCTTAGGAACATAATGT+TGG 0.511451 2_3:-61319123 Msa0304020:CDS
CTTGTGGTGGACAGAAGCTT+AGG 0.512735 2_3:-61319136 Msa0304020:CDS
ATTGTTATTGTAAGATAAGT+GGG 0.514386 2_3:-61317521 Msa0304020:three_prime_UTR
ACATGAATGGAAATATGAAA+AGG 0.521149 2_3:-61318386 Msa0304020:CDS
CAGAGTGGAAAGGACATGAA+TGG 0.529406 2_3:-61318399 Msa0304020:CDS
ATAAATATTGATATCCATGT+TGG 0.529519 2_3:+61319747 None:intergenic
GTACTTATTTCCAATGTACA+AGG 0.532016 2_3:+61317836 None:intergenic
TCTTGATCCTGGTGATAGCT+AGG 0.533485 2_3:-61318058 Msa0304020:three_prime_UTR
TTTCTGGTAGCTCAGTTCCA+TGG 0.547316 2_3:+61317918 None:intergenic
TGGAACTTGTGCTACATGTA+TGG 0.561485 2_3:-61318963 Msa0304020:CDS
TAGTCTGTGTTGCTACCAGA+TGG 0.569681 2_3:-61319185 Msa0304020:CDS
TGGCATAACATAATTGGTTG+AGG 0.572563 2_3:-61317772 Msa0304020:three_prime_UTR
TGGGTGAAGCAGATTCTACA+GGG 0.575014 2_3:-61318572 Msa0304020:CDS
CGGCACTGTCCCTGAAAAGA+CGG 0.578806 2_3:-61319408 Msa0304020:CDS
ATGATCCAAAATAGCACATG+AGG 0.580565 2_3:-61317804 Msa0304020:three_prime_UTR
TTATGTCTTTATCTCCAACA+TGG 0.586390 2_3:-61319761 Msa0304020:five_prime_UTR
AGTAGTAAAACTTAACAAAG+TGG 0.587524 2_3:-61317635 Msa0304020:three_prime_UTR
GATCCTGGTGATAGCTAGGA+CGG 0.588930 2_3:-61318054 Msa0304020:three_prime_UTR
TCTTTCTCTTTGTCAGTGCG+AGG 0.589508 2_3:+61318803 None:intergenic
ATGGTCGAGTTTGAATCAAG+TGG 0.592731 2_3:+61317937 None:intergenic
TTAGCATGTCAAACAACTGT+GGG 0.604116 2_3:-61318591 Msa0304020:CDS
TACATTGGAAATAAGTACAA+AGG 0.610804 2_3:-61317831 Msa0304020:three_prime_UTR
TTGTGCTACATGTATGGTAG+AGG 0.614537 2_3:-61318957 Msa0304020:intron
AAACCGTCCTAGCTATCACC+AGG 0.614689 2_3:+61318051 None:intergenic
AGAACCAAAATTAGAGCAGT+CGG 0.615630 2_3:-61319428 Msa0304020:CDS
TGGTTGAGGTAAATGACACT+TGG 0.617626 2_3:-61317758 Msa0304020:three_prime_UTR
ACTTGATTCAAACTCGACCA+TGG 0.622490 2_3:-61317935 Msa0304020:three_prime_UTR
ACAAATGCAAAACCTATAGA+GGG 0.622761 2_3:+61319353 None:intergenic
GACTCAGCAGACTCTTTGTG+AGG 0.642468 2_3:-61318355 Msa0304020:exon
GTGCATTATCGTACAGCTTG+TGG 0.644594 2_3:-61319152 Msa0304020:CDS
CAACAATTACCAGAGTGGAA+AGG 0.648231 2_3:-61318409 Msa0304020:CDS
AAATGCAACGATTGATCACA+AGG 0.650416 2_3:+61317872 None:intergenic
TGAAGCAGATTCTACAGGGG+TGG 0.651914 2_3:-61318568 Msa0304020:intron
ATGCAAAACCTATAGAGGGA+GGG 0.653145 2_3:+61319357 None:intergenic
GAGACGTGTGAATGCATTAG+GGG 0.653996 2_3:+61319499 None:intergenic
AATGCAAAACCTATAGAGGG+AGG 0.655010 2_3:+61319356 None:intergenic
ATTAGCATGTCAAACAACTG+TGG 0.658456 2_3:-61318592 Msa0304020:CDS
TGATTCAACAATTACCAGAG+TGG 0.670303 2_3:-61318414 Msa0304020:CDS
CATTATCGTACAGCTTGTGG+TGG 0.680953 2_3:-61319149 Msa0304020:CDS
AGGGTCATTAGAGTCACTAG+TGG 0.691443 2_3:+61319376 None:intergenic
ATTATCGGTGCAAAAGCACG+TGG 0.697957 2_3:-61317715 Msa0304020:three_prime_UTR
AGCACATGAGGAAATGCACG+TGG 0.720914 2_3:-61317792 Msa0304020:three_prime_UTR
GGGTGAAGCAGATTCTACAG+GGG 0.770570 2_3:-61318571 Msa0304020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_3:61318221-61318240 Msa0304020:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_3:61318415-61318434 Msa0304020:CDS 10.0%
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_3:61318221-61318240 Msa0304020:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_3:61318415-61318434 Msa0304020:CDS 10.0%
!! TTTATGTACATTATTCTTTA+TGG - chr2_3:61317567-61317586 Msa0304020:three_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_3:61317599-61317618 None:intergenic 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_3:61318756-61318775 Msa0304020:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_3:61319671-61319690 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_3:61319672-61319691 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_3:61319698-61319717 Msa0304020:five_prime_UTR 15.0%
!! TTTATGTACATTATTCTTTA+TGG - chr2_3:61317567-61317586 Msa0304020:three_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_3:61317599-61317618 None:intergenic 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_3:61318756-61318775 Msa0304020:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_3:61319671-61319690 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_3:61319672-61319691 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_3:61319698-61319717 Msa0304020:five_prime_UTR 15.0%
!! ATAAATATTGATATCCATGT+TGG + chr2_3:61317523-61317542 None:intergenic 20.0%
!! TAATTCTACTTATATCTAGT+TGG - chr2_3:61318008-61318027 Msa0304020:three_prime_UTR 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG - chr2_3:61318057-61318076 Msa0304020:three_prime_UTR 20.0%
!!! AGCAAAAATACACATTTTAT+TGG - chr2_3:61318362-61318381 Msa0304020:CDS 20.0%
!!! GCAAAAATACACATTTTATT+GGG - chr2_3:61318363-61318382 Msa0304020:CDS 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_3:61318721-61318740 Msa0304020:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_3:61318801-61318820 Msa0304020:CDS 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_3:61319301-61319320 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_3:61319302-61319321 None:intergenic 20.0%
!!! TATTGTTATTGTAAGATAAG+TGG - chr2_3:61319745-61319764 Msa0304020:five_prime_UTR 20.0%
!!! ATTGTTATTGTAAGATAAGT+GGG - chr2_3:61319746-61319765 Msa0304020:five_prime_UTR 20.0%
!! ATAAATATTGATATCCATGT+TGG + chr2_3:61317523-61317542 None:intergenic 20.0%
!! TAATTCTACTTATATCTAGT+TGG - chr2_3:61318008-61318027 Msa0304020:three_prime_UTR 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG - chr2_3:61318057-61318076 Msa0304020:three_prime_UTR 20.0%
!!! AGCAAAAATACACATTTTAT+TGG - chr2_3:61318362-61318381 Msa0304020:CDS 20.0%
!!! GCAAAAATACACATTTTATT+GGG - chr2_3:61318363-61318382 Msa0304020:CDS 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_3:61318721-61318740 Msa0304020:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_3:61318801-61318820 Msa0304020:CDS 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_3:61319301-61319320 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_3:61319302-61319321 None:intergenic 20.0%
!!! TATTGTTATTGTAAGATAAG+TGG - chr2_3:61319745-61319764 Msa0304020:five_prime_UTR 20.0%
!!! ATTGTTATTGTAAGATAAGT+GGG - chr2_3:61319746-61319765 Msa0304020:five_prime_UTR 20.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_3:61318193-61318212 None:intergenic 25.0%
!!! ATTTTGTTGTTGATTTTTCC+AGG - chr2_3:61318253-61318272 Msa0304020:three_prime_UTR 25.0%
!!! TTTTGTTGTTGATTTTTCCA+GGG - chr2_3:61318254-61318273 Msa0304020:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_3:61318274-61318293 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_3:61318275-61318294 Msa0304020:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_3:61318278-61318297 Msa0304020:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_3:61318279-61318298 Msa0304020:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_3:61318280-61318299 Msa0304020:three_prime_UTR 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_3:61318477-61318496 Msa0304020:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_3:61318478-61318497 Msa0304020:intron 25.0%
! CTTTATAGAAACCAAAGAAT+TGG - chr2_3:61318650-61318669 Msa0304020:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_3:61318720-61318739 Msa0304020:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_3:61318881-61318900 Msa0304020:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_3:61319102-61319121 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_3:61319300-61319319 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_3:61319368-61319387 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_3:61319436-61319455 Msa0304020:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_3:61319537-61319556 Msa0304020:exon 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_3:61319632-61319651 Msa0304020:five_prime_UTR 25.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_3:61318193-61318212 None:intergenic 25.0%
!!! ATTTTGTTGTTGATTTTTCC+AGG - chr2_3:61318253-61318272 Msa0304020:three_prime_UTR 25.0%
!!! TTTTGTTGTTGATTTTTCCA+GGG - chr2_3:61318254-61318273 Msa0304020:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_3:61318274-61318293 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_3:61318275-61318294 Msa0304020:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_3:61318278-61318297 Msa0304020:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_3:61318279-61318298 Msa0304020:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_3:61318280-61318299 Msa0304020:three_prime_UTR 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_3:61318477-61318496 Msa0304020:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_3:61318478-61318497 Msa0304020:intron 25.0%
! CTTTATAGAAACCAAAGAAT+TGG - chr2_3:61318650-61318669 Msa0304020:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_3:61318720-61318739 Msa0304020:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_3:61318881-61318900 Msa0304020:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_3:61319102-61319121 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_3:61319300-61319319 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_3:61319368-61319387 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_3:61319436-61319455 Msa0304020:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_3:61319537-61319556 Msa0304020:exon 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_3:61319632-61319651 Msa0304020:five_prime_UTR 25.0%
TTATGTCTTTATCTCCAACA+TGG - chr2_3:61317506-61317525 Msa0304020:three_prime_UTR 30.0%
! TGAAGTGTGTTTTTCATTTG+TGG + chr2_3:61317655-61317674 None:intergenic 30.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_3:61317702-61317721 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_3:61317801-61317820 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_3:61317917-61317936 None:intergenic 30.0%
GATTCTAACATTGAACTCTA+TGG - chr2_3:61318166-61318185 Msa0304020:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_3:61318281-61318300 Msa0304020:three_prime_UTR 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_3:61318425-61318444 Msa0304020:intron 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_3:61318827-61318846 Msa0304020:CDS 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_3:61319262-61319281 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_3:61319290-61319309 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_3:61319430-61319449 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_3:61319434-61319453 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_3:61319587-61319606 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_3:61319668-61319687 None:intergenic 30.0%
TTATGTCTTTATCTCCAACA+TGG - chr2_3:61317506-61317525 Msa0304020:three_prime_UTR 30.0%
! TGAAGTGTGTTTTTCATTTG+TGG + chr2_3:61317655-61317674 None:intergenic 30.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_3:61317702-61317721 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_3:61317801-61317820 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_3:61317917-61317936 None:intergenic 30.0%
GATTCTAACATTGAACTCTA+TGG - chr2_3:61318166-61318185 Msa0304020:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_3:61318281-61318300 Msa0304020:three_prime_UTR 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_3:61318425-61318444 Msa0304020:intron 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_3:61318827-61318846 Msa0304020:CDS 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_3:61319262-61319281 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_3:61319290-61319309 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_3:61319430-61319449 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_3:61319434-61319453 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_3:61319587-61319606 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_3:61319668-61319687 None:intergenic 30.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_3:61317821-61317840 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG - chr2_3:61317839-61317858 Msa0304020:three_prime_UTR 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_3:61317918-61317937 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_3:61318144-61318163 Msa0304020:three_prime_UTR 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_3:61318593-61318612 Msa0304020:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_3:61318664-61318683 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_3:61318675-61318694 Msa0304020:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_3:61318676-61318695 Msa0304020:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_3:61318853-61318872 Msa0304020:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_3:61319398-61319417 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_3:61319401-61319420 Msa0304020:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_3:61319463-61319482 Msa0304020:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_3:61319471-61319490 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_3:61319495-61319514 Msa0304020:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_3:61319588-61319607 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_3:61319599-61319618 Msa0304020:five_prime_UTR 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_3:61317821-61317840 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG - chr2_3:61317839-61317858 Msa0304020:three_prime_UTR 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_3:61317918-61317937 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_3:61318144-61318163 Msa0304020:three_prime_UTR 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_3:61318593-61318612 Msa0304020:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_3:61318664-61318683 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_3:61318675-61318694 Msa0304020:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_3:61318676-61318695 Msa0304020:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_3:61318853-61318872 Msa0304020:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_3:61319398-61319417 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_3:61319401-61319420 Msa0304020:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_3:61319463-61319482 Msa0304020:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_3:61319471-61319490 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_3:61319495-61319514 Msa0304020:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_3:61319588-61319607 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_3:61319599-61319618 Msa0304020:five_prime_UTR 35.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_3:61317757-61317776 None:intergenic 40.0%
AGAGACGTGTGAATGCATTA+GGG + chr2_3:61317772-61317791 None:intergenic 40.0%
! TCTCTGAATCCGTCTTTTCA+GGG + chr2_3:61317871-61317890 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_3:61317913-61317932 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_3:61317914-61317933 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_3:61318304-61318323 Msa0304020:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_3:61318310-61318329 Msa0304020:three_prime_UTR 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_3:61318430-61318449 Msa0304020:intron 40.0%
GAATCACAACCTACATCACA+TGG + chr2_3:61318839-61318858 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_3:61318858-61318877 Msa0304020:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_3:61319198-61319217 Msa0304020:intron 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_3:61319222-61319241 Msa0304020:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_3:61319256-61319275 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_3:61319253-61319272 Msa0304020:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_3:61319333-61319352 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_3:61319332-61319351 Msa0304020:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_3:61319421-61319440 Msa0304020:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_3:61319489-61319508 Msa0304020:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_3:61319509-61319528 Msa0304020:CDS 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_3:61317757-61317776 None:intergenic 40.0%
AGAGACGTGTGAATGCATTA+GGG + chr2_3:61317772-61317791 None:intergenic 40.0%
! TCTCTGAATCCGTCTTTTCA+GGG + chr2_3:61317871-61317890 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_3:61317913-61317932 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_3:61317914-61317933 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_3:61318304-61318323 Msa0304020:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_3:61318310-61318329 Msa0304020:three_prime_UTR 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_3:61318430-61318449 Msa0304020:intron 40.0%
GAATCACAACCTACATCACA+TGG + chr2_3:61318839-61318858 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_3:61318858-61318877 Msa0304020:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_3:61319198-61319217 Msa0304020:intron 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_3:61319222-61319241 Msa0304020:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_3:61319256-61319275 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_3:61319253-61319272 Msa0304020:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_3:61319333-61319352 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_3:61319332-61319351 Msa0304020:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_3:61319421-61319440 Msa0304020:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_3:61319489-61319508 Msa0304020:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_3:61319509-61319528 Msa0304020:CDS 40.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_3:61317754-61317773 None:intergenic 45.0%
GAGACGTGTGAATGCATTAG+GGG + chr2_3:61317771-61317790 None:intergenic 45.0%
GAGAGACGTGTGAATGCATT+AGG + chr2_3:61317773-61317792 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG + chr2_3:61317846-61317865 None:intergenic 45.0%
! GTCTCTGAATCCGTCTTTTC+AGG + chr2_3:61317872-61317891 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_3:61317894-61317913 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_3:61317902-61317921 Msa0304020:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_3:61318082-61318101 Msa0304020:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_3:61318112-61318131 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_3:61318115-61318134 Msa0304020:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_3:61318118-61318137 Msa0304020:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_3:61318284-61318303 Msa0304020:three_prime_UTR 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_3:61318467-61318486 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_3:61318695-61318714 Msa0304020:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_3:61318870-61318889 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_3:61318868-61318887 Msa0304020:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_3:61319209-61319228 Msa0304020:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_3:61319352-61319371 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_3:61319552-61319571 Msa0304020:five_prime_UTR 45.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_3:61317754-61317773 None:intergenic 45.0%
GAGACGTGTGAATGCATTAG+GGG + chr2_3:61317771-61317790 None:intergenic 45.0%
GAGAGACGTGTGAATGCATT+AGG + chr2_3:61317773-61317792 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG + chr2_3:61317846-61317865 None:intergenic 45.0%
! GTCTCTGAATCCGTCTTTTC+AGG + chr2_3:61317872-61317891 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_3:61317894-61317913 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_3:61317902-61317921 Msa0304020:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_3:61318082-61318101 Msa0304020:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_3:61318112-61318131 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_3:61318115-61318134 Msa0304020:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_3:61318118-61318137 Msa0304020:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_3:61318284-61318303 Msa0304020:three_prime_UTR 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_3:61318467-61318486 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_3:61318695-61318714 Msa0304020:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_3:61318870-61318889 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_3:61318868-61318887 Msa0304020:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_3:61319209-61319228 Msa0304020:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_3:61319352-61319371 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_3:61319552-61319571 Msa0304020:five_prime_UTR 45.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_3:61318100-61318119 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_3:61318131-61318150 Msa0304020:three_prime_UTR 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_3:61318694-61318713 Msa0304020:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_3:61318696-61318715 Msa0304020:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_3:61318699-61318718 Msa0304020:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_3:61318912-61318931 Msa0304020:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_3:61319213-61319232 Msa0304020:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_3:61319219-61319238 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_3:61319475-61319494 Msa0304020:CDS 50.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_3:61318100-61318119 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_3:61318131-61318150 Msa0304020:three_prime_UTR 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_3:61318694-61318713 Msa0304020:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_3:61318696-61318715 Msa0304020:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_3:61318699-61318718 Msa0304020:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_3:61318912-61318931 Msa0304020:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_3:61319213-61319232 Msa0304020:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_3:61319219-61319238 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_3:61319475-61319494 Msa0304020:CDS 50.0%
CGGCACTGTCCCTGAAAAGA+CGG - chr2_3:61317859-61317878 Msa0304020:three_prime_UTR 55.0%
CGGCACTGTCCCTGAAAAGA+CGG - chr2_3:61317859-61317878 Msa0304020:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61317504 61319785 61317504 ID=Msa0304020;Name=Msa0304020
chr2_3 mRNA 61317504 61319785 61317504 ID=Msa0304020-mRNA-1;Parent=Msa0304020;Name=Msa0304020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=239|1|1|1|1|1|6|853|191
chr2_3 exon 61317504 61318440 61317504 ID=Msa0304020-mRNA-1:exon:20269;Parent=Msa0304020-mRNA-1
chr2_3 exon 61318569 61318631 61318569 ID=Msa0304020-mRNA-1:exon:20268;Parent=Msa0304020-mRNA-1
chr2_3 exon 61318790 61318852 61318790 ID=Msa0304020-mRNA-1:exon:20267;Parent=Msa0304020-mRNA-1
chr2_3 exon 61318958 61319014 61318958 ID=Msa0304020-mRNA-1:exon:20266;Parent=Msa0304020-mRNA-1
chr2_3 exon 61319094 61319204 61319094 ID=Msa0304020-mRNA-1:exon:20265;Parent=Msa0304020-mRNA-1
chr2_3 exon 61319349 61319785 61319349 ID=Msa0304020-mRNA-1:exon:20264;Parent=Msa0304020-mRNA-1
chr2_3 five_prime_UTR 61319547 61319785 61319547 ID=Msa0304020-mRNA-1:five_prime_utr;Parent=Msa0304020-mRNA-1
chr2_3 CDS 61319349 61319546 61319349 ID=Msa0304020-mRNA-1:cds;Parent=Msa0304020-mRNA-1
chr2_3 CDS 61319094 61319204 61319094 ID=Msa0304020-mRNA-1:cds;Parent=Msa0304020-mRNA-1
chr2_3 CDS 61318958 61319014 61318958 ID=Msa0304020-mRNA-1:cds;Parent=Msa0304020-mRNA-1
chr2_3 CDS 61318790 61318852 61318790 ID=Msa0304020-mRNA-1:cds;Parent=Msa0304020-mRNA-1
chr2_3 CDS 61318569 61318631 61318569 ID=Msa0304020-mRNA-1:cds;Parent=Msa0304020-mRNA-1
chr2_3 CDS 61318357 61318440 61318357 ID=Msa0304020-mRNA-1:cds;Parent=Msa0304020-mRNA-1
chr2_3 three_prime_UTR 61317504 61318356 61317504 ID=Msa0304020-mRNA-1:three_prime_utr;Parent=Msa0304020-mRNA-1
Gene Sequence

>Msa0304020

ATGTCACTCCTCCAACTCAAACTAACCCCTAATGCATTCACACGTCTCTCTTCTTCCTCACATAAAAAATTCAGACCAAACACAACACTCTTTACAAGAACCAAAATTAGAGCAGTCGGCACTGTCCCTGAAAAGACGGATTCAGAGACCACTAGTGACTCTAATGACCCTCCCTCTATAGGTTTTGCATTTGTCAGTTCTGTGTTGCTACCAGATGGAACACCAGATGTGCATTATCGTACAGCTTGTGGTGGACAGAAGCTTAGGAACATAATGTTGGATTCTAACATTGAACTCTATGGACCTTATGGTAGAATTTTGTTAAATTGTGGAGGGGGTGGAACTTGTGCTACATGTATGGTAGAGGTTCTTGAAGGCAAGGAGCTTCTGAGTCCTCGCACTGACAAAGAGAAAGAAAAACTTAAGAGGAAACCAAAGAATTGGAGATTAGCATGTCAAACAACTGTGGGTGAAGCAGATTCTACAGGGGTGGTTGTGATTCAACAATTACCAGAGTGGAAAGGACATGAATGGAAATATGAAAAGGATGATGATGACTCAGCAGACTCTTTGTGA

Protein sequence

>Msa0304020

MSLLQLKLTPNAFTRLSSSSHKKFRPNTTLFTRTKIRAVGTVPEKTDSETTSDSNDPPSIGFAFVSSVLLPDGTPDVHYRTACGGQKLRNIMLDSNIELYGPYGRILLNCGGGGTCATCMVEVLEGKELLSPRTDKEKEKLKRKPKNWRLACQTTVGEADSTGVVVIQQLPEWKGHEWKYEKDDDDSADSL*