AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428740 MtrunA17_Chr3g0132191 99.070 215 0 2 4 217 3 216 1.19e-156 432
Msa0428740 MtrunA17_Chr7g0272991 66.038 159 40 4 38 185 83 238 7.86e-66 204
Msa0428740 MtrunA17_Chr2g0310741 68.966 145 34 4 37 172 84 226 1.25e-65 203
Msa0428740 MtrunA17_Chr1g0191681 69.014 142 33 2 38 168 83 224 1.57e-62 195
Msa0428740 MtrunA17_Chr2g0288481 48.333 180 73 3 38 199 67 244 1.63e-49 161
Msa0428740 MtrunA17_Chr2g0318881 62.069 87 32 1 55 140 21 107 3.76e-32 113
Msa0428740 MtrunA17_Chr2g0318921 63.855 83 29 1 55 136 21 103 1.49e-31 111
Msa0428740 MtrunA17_Chr8g0376351 71.429 63 18 0 74 136 1 63 5.01e-27 99.0
Msa0428740 MtrunA17_Chr3g0081161 35.514 107 69 0 56 162 8 114 1.58e-12 65.1
Msa0428740 MtrunA17_Chr8g0354151 37.975 79 49 0 56 134 8 86 7.43e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428740 AT5G63470.2 76.887 212 25 4 12 200 20 230 5.63e-101 293
Msa0428740 AT5G63470.1 76.887 212 25 4 12 200 20 230 5.63e-101 293
Msa0428740 AT3G48590.1 85.792 183 19 3 24 200 33 214 6.23e-101 292
Msa0428740 AT1G56170.1 71.324 136 34 2 35 168 55 187 1.42e-66 204
Msa0428740 AT1G56170.2 71.324 136 34 2 35 168 55 187 1.42e-66 204
Msa0428740 AT1G54830.2 65.584 154 44 4 38 184 52 203 8.50e-64 197
Msa0428740 AT1G54830.3 65.584 154 44 4 38 184 52 203 8.50e-64 197
Msa0428740 AT1G54830.1 65.584 154 44 4 38 184 52 203 8.50e-64 197
Msa0428740 AT1G08970.3 67.586 145 37 3 38 173 62 205 1.12e-62 195
Msa0428740 AT1G08970.4 67.586 145 37 3 38 173 62 205 1.12e-62 195
Msa0428740 AT1G08970.2 67.586 145 37 3 38 173 62 205 1.12e-62 195
Msa0428740 AT1G08970.1 67.586 145 37 3 38 173 62 205 1.12e-62 195
Msa0428740 AT5G50480.1 51.075 186 72 8 21 200 20 192 1.71e-52 168
Msa0428740 AT5G27910.1 43.779 217 88 7 1 213 1 187 3.67e-46 151
Msa0428740 AT5G50490.1 45.946 148 72 3 30 174 13 155 1.50e-36 127
Msa0428740 AT5G50470.1 39.086 197 94 7 21 208 31 210 8.70e-35 123
Msa0428740 AT5G38140.1 44.000 100 52 2 35 133 48 144 1.89e-25 98.6
Msa0428740 AT3G12480.1 37.975 79 49 0 56 134 8 86 7.93e-12 63.5

Find 101 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGCTAAAGCATATTTAA+TGG 0.228543 3_2:-79697074 None:intergenic
CATTAGATGAACGTTATTAA+AGG 0.257098 3_2:-79697289 None:intergenic
CTCAGGCTTGGCAGTCTGTT+TGG 0.288988 3_2:+79695165 Msa0428740:CDS
TTGAACTCACCATTCGTTCT+TGG 0.290380 3_2:+79694883 Msa0428740:CDS
AAGTTTCCAATGATACTTAA+AGG 0.290533 3_2:+79697871 Msa0428740:three_prime_UTR
CTAGGGCTTAATTTAATTGA+TGG 0.293080 3_2:+79697151 Msa0428740:three_prime_UTR
TTGTTGATCATCAAGTTAAA+AGG 0.293290 3_2:-79697734 None:intergenic
CTTTAGCCTGGGAAACTGTT+AGG 0.320246 3_2:+79697086 Msa0428740:three_prime_UTR
TCCTTATTATTATCCTCCTA+TGG 0.322109 3_2:+79695070 Msa0428740:CDS
CCCATAGGAGGATAATAATA+AGG 0.322822 3_2:-79695071 None:intergenic
GTGTTGGATATTGTTGTTGC+TGG 0.326874 3_2:-79694626 None:intergenic
AATATCTTGTAAAAGACATT+TGG 0.349503 3_2:+79697921 Msa0428740:three_prime_UTR
TTTGTTTATATGTCTCAAAA+TGG 0.358976 3_2:+79697536 Msa0428740:three_prime_UTR
TCATCATCATTCATCATTCA+TGG 0.360396 3_2:+79694590 Msa0428740:exon
TCACCTCCTTTAAGTATCAT+TGG 0.361341 3_2:-79697877 None:intergenic
AATTAGTTAGACTTTACAAT+TGG 0.370481 3_2:+79694422 None:intergenic
AATGGTTTCAATGCCTCATA+TGG 0.374157 3_2:+79697554 Msa0428740:three_prime_UTR
CACTCAGCTGCTGAGCAAAA+AGG 0.376691 3_2:-79697580 None:intergenic
TTATCTTATTCAAATTTCCT+AGG 0.377329 3_2:+79697133 Msa0428740:three_prime_UTR
TGAATAAGATAATTGATTGC+TGG 0.383736 3_2:-79697122 None:intergenic
TCAAGTTAAAAGGTTCTTGA+TGG 0.388642 3_2:-79697724 None:intergenic
CAAGCTTTGGCAAAGAGAAT+TGG 0.395526 3_2:-79694846 None:intergenic
GGTGCTGCTGCTGCTATTGT+TGG 0.404432 3_2:+79695029 Msa0428740:CDS
TTATGTTCAGCCGCCTTCTC+AGG 0.407879 3_2:+79695148 Msa0428740:CDS
AATGAAAAGCTCACAAGCTT+TGG 0.414215 3_2:-79694859 None:intergenic
AACAAGACAAACAAGCCAAC+TGG 0.422647 3_2:-79697511 None:intergenic
TGGTCGTCCCGCTGTTGATC+CGG 0.430949 3_2:+79695115 Msa0428740:CDS
CCATTAAATATGCTTTAGCC+TGG 0.435397 3_2:+79697074 Msa0428740:three_prime_UTR
CCTCCTATGGGACAACCTGC+TGG 0.443243 3_2:+79695083 Msa0428740:CDS
TCATGTACATCTGTGCTTCA+AGG 0.444382 3_2:+79697411 Msa0428740:three_prime_UTR
TTCAGCCGCCTTCTCAGGCT+TGG 0.445274 3_2:+79695153 Msa0428740:CDS
ATATTGCTGCTGCTATTACT+AGG 0.451638 3_2:+79694949 Msa0428740:CDS
TGGCAGACGGGAGCGGATGA+TGG 0.454235 3_2:+79695185 Msa0428740:CDS
TGCACAGAAGGACCATTGTT+CGG 0.455723 3_2:-79697790 None:intergenic
AACAACAGCTTCAAATGTTC+TGG 0.455902 3_2:+79694703 Msa0428740:CDS
TGGCAGTCTGTTTGGCAGAC+GGG 0.457754 3_2:+79695173 Msa0428740:CDS
TGGACTTCTGCAGTGTTGCT+TGG 0.458943 3_2:+79697645 Msa0428740:three_prime_UTR
TCTTATGCTGGTGGTGGTGT+TGG 0.460055 3_2:+79695209 Msa0428740:CDS
TTGGCAGTCTGTTTGGCAGA+CGG 0.463047 3_2:+79695172 Msa0428740:CDS
GTCTGTTTGGCAGACGGGAG+CGG 0.463208 3_2:+79695178 Msa0428740:CDS
ATATGTTTGATATGATGATC+TGG 0.465242 3_2:-79697182 None:intergenic
CCCGCTGTTGATCCGGCTAC+CGG 0.469158 3_2:+79695122 Msa0428740:CDS
CCTTATTATTATCCTCCTAT+GGG 0.475192 3_2:+79695071 Msa0428740:CDS
ATTAGTTAGACTTTACAATT+GGG 0.481509 3_2:+79694423 None:intergenic
TGATGGAATTGTGAATTCAA+TGG 0.488221 3_2:-79694532 None:intergenic
AGGTAGGGCCTACGGCAGCC+TGG 0.493696 3_2:-79694481 None:intergenic
GCGGATGATGGTTCTTATGC+TGG 0.494268 3_2:+79695197 Msa0428740:CDS
CATCAATTAAATTAAGCCCT+AGG 0.504678 3_2:-79697150 None:intergenic
AGTGACCGCACTGCTGCTGA+TGG 0.506239 3_2:+79697599 Msa0428740:three_prime_UTR
TATCTTATTCAAATTTCCTA+GGG 0.509926 3_2:+79697134 Msa0428740:three_prime_UTR
GTTGTTGTTGGAGAAGATGT+TGG 0.512349 3_2:-79694680 None:intergenic
AATGGAATAACAACATAAGC+AGG 0.516458 3_2:-79697474 None:intergenic
TTGGATGATTGGATAAGGTA+GGG 0.519348 3_2:-79694496 None:intergenic
ATTCCAGCAGGTTGTCCCAT+AGG 0.521379 3_2:-79695086 None:intergenic
GGTGTAACTGCCGTGGGCGA+AGG 0.521917 3_2:-79694648 None:intergenic
CCTGCATAATCTTGTAAATG+TGG 0.522307 3_2:+79697220 Msa0428740:three_prime_UTR
GCTGGTGGTGGTGTTGGCAG+TGG 0.530864 3_2:+79695215 Msa0428740:CDS
CAACCTGCTGGAATGATGAT+TGG 0.531059 3_2:+79695095 Msa0428740:CDS
TTCAATTTCTTGACGTTGGT+AGG 0.532955 3_2:-79694727 None:intergenic
GGTAGGGCCTACGGCAGCCT+GGG 0.538956 3_2:-79694480 None:intergenic
CATTAAATATGCTTTAGCCT+GGG 0.541648 3_2:+79697075 Msa0428740:three_prime_UTR
TCATCTTTAATCTCGTCTCT+CGG 0.549440 3_2:-79695005 None:intergenic
CCACATTTACAAGATTATGC+AGG 0.551427 3_2:-79697220 None:intergenic
ATTGGATAAGGTAGGGCCTA+CGG 0.553186 3_2:-79694489 None:intergenic
TGTTTCACATATTGCACAGA+AGG 0.553286 3_2:-79697802 None:intergenic
TGGTGGTGGTGTAACTGCCG+TGG 0.553933 3_2:-79694655 None:intergenic
TGAACATAAACACCGGTAGC+CGG 0.556443 3_2:-79695134 None:intergenic
ATTGTTGGTGCTGCTGCTAG+TGG 0.559151 3_2:+79695044 Msa0428740:CDS
TTTGGATGATTGGATAAGGT+AGG 0.559688 3_2:-79694497 None:intergenic
CGACCAATCATCATTCCAGC+AGG 0.560161 3_2:-79695098 None:intergenic
TGGAAGCAGAAAATGCTACT+AGG 0.560272 3_2:-79697054 None:intergenic
CTAAATCCTAACAGTTTCCC+AGG 0.561836 3_2:-79697092 None:intergenic
TGCGTGCTAATGGAAGTTGA+TGG 0.566195 3_2:-79694770 None:intergenic
CCGGTAGCCGGATCAACAGC+GGG 0.566961 3_2:-79695122 None:intergenic
AGTGGTCAGCACAATGGCGA+TGG 0.568390 3_2:+79695233 Msa0428740:CDS
CGTGTTCAATTTCTTGACGT+TGG 0.574575 3_2:-79694731 None:intergenic
GATGGTTCTTATGCTGGTGG+TGG 0.575597 3_2:+79695203 Msa0428740:CDS
GGGGAAAGAAAACAAGTCCC+AGG 0.577150 3_2:+79694463 Msa0428740:five_prime_UTR
TGGAGAAGATGTTGGAATGG+TGG 0.580552 3_2:-79694672 None:intergenic
GACTGCCAAGCCTGAGAAGG+CGG 0.581694 3_2:-79695158 None:intergenic
ACTGCCGTGGGCGAAGGTGT+TGG 0.584798 3_2:-79694642 None:intergenic
AGCATGAAGCCAAGAACGAA+TGG 0.590029 3_2:-79694892 None:intergenic
AGAGACGAGATTAAAGATGA+AGG 0.596434 3_2:+79695008 Msa0428740:CDS
TGTTGGAGAAGATGTTGGAA+TGG 0.596521 3_2:-79694675 None:intergenic
CCAGCAGGTTGTCCCATAGG+AGG 0.597127 3_2:-79695083 None:intergenic
ACAGACTGCCAAGCCTGAGA+AGG 0.599594 3_2:-79695161 None:intergenic
AGCACAATGGCGATGGCCAG+AGG 0.601116 3_2:+79695240 Msa0428740:CDS
AGAAGATGTTGGAATGGTGG+TGG 0.605173 3_2:-79694669 None:intergenic
GGTGGTGGTGTAACTGCCGT+GGG 0.608785 3_2:-79694654 None:intergenic
ATAAGATAATTGATTGCTGG+AGG 0.617569 3_2:-79697119 None:intergenic
ATCTGTGCTTCAAGGCACAC+AGG 0.620861 3_2:+79697419 Msa0428740:three_prime_UTR
GGAATTGTGAATTCAATGGA+AGG 0.624201 3_2:-79694528 None:intergenic
AACAAGTCCCAGGCTGCCGT+AGG 0.626135 3_2:+79694473 Msa0428740:five_prime_UTR
ATATCCAACACCTTCGCCCA+CGG 0.631925 3_2:+79694638 Msa0428740:CDS
ACCGGTAGCCGGATCAACAG+CGG 0.640253 3_2:-79695123 None:intergenic
TTTCCAATGATACTTAAAGG+AGG 0.656557 3_2:+79697874 Msa0428740:three_prime_UTR
GTTGGCAGTGGTCAGCACAA+TGG 0.663712 3_2:+79695227 Msa0428740:CDS
GATGATGGTTCTTATGCTGG+TGG 0.665141 3_2:+79695200 Msa0428740:CDS
CAAAATTTAAAACCGAACAA+TGG 0.668599 3_2:+79697778 Msa0428740:three_prime_UTR
AGGCGGCTGAACATAAACAC+CGG 0.726448 3_2:-79695141 None:intergenic
ACAGTCCATCAGCAGCAGTG+CGG 0.747713 3_2:-79697604 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGATAAAAAACATTAA+AGG + chr3_2:79696145-79696164 Msa0428740:intron 10.0%
!!! ATTTTGTTAACTAAATTTAT+GGG + chr3_2:79697698-79697717 Msa0428740:three_prime_UTR 10.0%
!!! TTAATTTATAGATGATTTTG+AGG + chr3_2:79695731-79695750 Msa0428740:intron 15.0%
!!! TAATTTATAGATGATTTTGA+GGG + chr3_2:79695732-79695751 Msa0428740:intron 15.0%
!! TTAATAAAAACAAAACAATG+TGG - chr3_2:79696286-79696305 None:intergenic 15.0%
!! TTATTAATTATTTATAGGTG+TGG + chr3_2:79696299-79696318 Msa0428740:intron 15.0%
!!! CTAAAAATTTAATTTGCATT+AGG + chr3_2:79696603-79696622 Msa0428740:intron 15.0%
!!! CTTTCTTTTATTGTTATTTT+AGG + chr3_2:79697001-79697020 Msa0428740:intron 15.0%
!!! GATTTTGTTAACTAAATTTA+TGG + chr3_2:79697697-79697716 Msa0428740:three_prime_UTR 15.0%
!!! GATTTTCTAAATTACATTTT+TGG + chr3_2:79697898-79697917 Msa0428740:three_prime_UTR 15.0%
!!! GACTGATATTTTTGATTTTT+TGG + chr3_2:79694971-79694990 Msa0428740:CDS 20.0%
!! TAAGTATTATGCAAGTATAA+AGG + chr3_2:79695781-79695800 Msa0428740:intron 20.0%
!! AAGTATTATGCAAGTATAAA+GGG + chr3_2:79695782-79695801 Msa0428740:intron 20.0%
!! TATCTAGATAGATATTTCAT+TGG + chr3_2:79695815-79695834 Msa0428740:intron 20.0%
!!! TAATGTTACATGTCATTTAT+TGG + chr3_2:79695916-79695935 Msa0428740:intron 20.0%
!! TAAAACATATTGGTAAATTC+CGG - chr3_2:79696225-79696244 None:intergenic 20.0%
!! GCAAATCTAATAAAACATAT+TGG - chr3_2:79696235-79696254 None:intergenic 20.0%
!! TTTGCTTTGCAATAAAATTA+TGG + chr3_2:79696250-79696269 Msa0428740:intron 20.0%
!! ATTTATGACAAAAACTTTGA+TGG + chr3_2:79696465-79696484 Msa0428740:intron 20.0%
!!! AATTTAATTTGCATTAGGTT+AGG + chr3_2:79696608-79696627 Msa0428740:intron 20.0%
!!! ATTTTCAAAACTATTGTTGA+TGG + chr3_2:79696965-79696984 Msa0428740:intron 20.0%
!!! TCTTTTATTGTTATTTTAGG+TGG + chr3_2:79697004-79697023 Msa0428740:intron 20.0%
!! TTATCTTATTCAAATTTCCT+AGG + chr3_2:79697133-79697152 Msa0428740:three_prime_UTR 20.0%
!! TATCTTATTCAAATTTCCTA+GGG + chr3_2:79697134-79697153 Msa0428740:three_prime_UTR 20.0%
!! TTTGTTTATATGTCTCAAAA+TGG + chr3_2:79697536-79697555 Msa0428740:three_prime_UTR 20.0%
!! AATATCTTGTAAAAGACATT+TGG + chr3_2:79697921-79697940 Msa0428740:three_prime_UTR 20.0%
!! TCATTTTCTCATATTATTGC+TGG - chr3_2:79695562-79695581 None:intergenic 25.0%
! TTAAATGTAGCTACATTTGT+TGG + chr3_2:79695588-79695607 Msa0428740:intron 25.0%
! TAGATAGATATTTCATTGGT+TGG + chr3_2:79695819-79695838 Msa0428740:intron 25.0%
! TAGTATTACCTTGTCAAAAA+CGG + chr3_2:79696042-79696061 Msa0428740:intron 25.0%
!! TAGATGCTATGTTCTTTTAA+AGG + chr3_2:79696343-79696362 Msa0428740:intron 25.0%
!! AGATGCTATGTTCTTTTAAA+GGG + chr3_2:79696344-79696363 Msa0428740:intron 25.0%
! GTCAATAATAATCCATAACA+AGG - chr3_2:79696491-79696510 None:intergenic 25.0%
!!! TGGATTATTATTGACTTAGT+CGG + chr3_2:79696496-79696515 Msa0428740:intron 25.0%
! TCTGATCTAATCAATGAATT+GGG - chr3_2:79696746-79696765 None:intergenic 25.0%
! ATCTGATCTAATCAATGAAT+TGG - chr3_2:79696747-79696766 None:intergenic 25.0%
! ACCATTTATGTAAGATTAGA+TGG + chr3_2:79696853-79696872 Msa0428740:intron 25.0%
! ACCATCTAATCTTACATAAA+TGG - chr3_2:79696857-79696876 None:intergenic 25.0%
!!! TTTATTGTTATTTTAGGTGG+TGG + chr3_2:79697007-79697026 Msa0428740:intron 25.0%
! TGAATAAGATAATTGATTGC+TGG - chr3_2:79697125-79697144 None:intergenic 25.0%
! ATATGTTTGATATGATGATC+TGG - chr3_2:79697185-79697204 None:intergenic 25.0%
! CATTAGATGAACGTTATTAA+AGG - chr3_2:79697292-79697311 None:intergenic 25.0%
!!! TGTTGCTTGGAATTTTTTTA+GGG + chr3_2:79697658-79697677 Msa0428740:three_prime_UTR 25.0%
! TTGTTGATCATCAAGTTAAA+AGG - chr3_2:79697737-79697756 None:intergenic 25.0%
!! CAAAATTTAAAACCGAACAA+TGG + chr3_2:79697778-79697797 Msa0428740:three_prime_UTR 25.0%
! AAGTTTCCAATGATACTTAA+AGG + chr3_2:79697871-79697890 Msa0428740:three_prime_UTR 25.0%
TGGGCAAACAAAAATTTAGA+AGG + chr3_2:79694442-79694461 Msa0428740:five_prime_UTR 30.0%
GGGCAAACAAAAATTTAGAA+GGG + chr3_2:79694443-79694462 Msa0428740:five_prime_UTR 30.0%
GGCAAACAAAAATTTAGAAG+GGG + chr3_2:79694444-79694463 Msa0428740:five_prime_UTR 30.0%
!! CATTTTTGGATGATTGGATA+AGG - chr3_2:79694504-79694523 None:intergenic 30.0%
!! GGAAATCATTTTTGGATGAT+TGG - chr3_2:79694510-79694529 None:intergenic 30.0%
! CAATGGAAGGAAATCATTTT+TGG - chr3_2:79694518-79694537 None:intergenic 30.0%
TGATGGAATTGTGAATTCAA+TGG - chr3_2:79694535-79694554 None:intergenic 30.0%
!!! ATGTTTTGAGGAGTAACAAT+TGG - chr3_2:79694571-79694590 None:intergenic 30.0%
!! TGAATGATGATGATGTTTTG+AGG - chr3_2:79694583-79694602 None:intergenic 30.0%
TCATCATCATTCATCATTCA+TGG + chr3_2:79694590-79694609 Msa0428740:exon 30.0%
! ATTTTCTTAATGCGTGCTAA+TGG - chr3_2:79694783-79694802 None:intergenic 30.0%
TCCTTATTATTATCCTCCTA+TGG + chr3_2:79695070-79695089 Msa0428740:CDS 30.0%
CCTTATTATTATCCTCCTAT+GGG + chr3_2:79695071-79695090 Msa0428740:CDS 30.0%
GGAATATGAATCATGAACAT+CGG + chr3_2:79695327-79695346 Msa0428740:intron 30.0%
!! TTAAAAGTGTTTGTGTCAGT+TGG + chr3_2:79695411-79695430 Msa0428740:intron 30.0%
! ATATCAGCGTTTTATAGCAA+CGG - chr3_2:79695477-79695496 None:intergenic 30.0%
ACAGTGTTGCATATGTATTT+AGG + chr3_2:79695653-79695672 Msa0428740:intron 30.0%
! TAGATATTTCATTGGTTGGT+TGG + chr3_2:79695823-79695842 Msa0428740:intron 30.0%
ATACATTGGACTAAAACAGA+AGG - chr3_2:79695997-79696016 None:intergenic 30.0%
TGAGACAAAAAGAGATACAT+TGG - chr3_2:79696011-79696030 None:intergenic 30.0%
!! GTTCTGCTTTTCTTAGATTT+CGG + chr3_2:79696119-79696138 Msa0428740:intron 30.0%
!! GGATTATTATTGACTTAGTC+GGG + chr3_2:79696497-79696516 Msa0428740:intron 30.0%
!! GATTATTATTGACTTAGTCG+GGG + chr3_2:79696498-79696517 Msa0428740:intron 30.0%
!! ATTATTATTGACTTAGTCGG+GGG + chr3_2:79696499-79696518 Msa0428740:intron 30.0%
!! AACTGTGATGTGTTTTTATC+TGG + chr3_2:79696776-79696795 Msa0428740:intron 30.0%
!! ACTGTGATGTGTTTTTATCT+GGG + chr3_2:79696777-79696796 Msa0428740:intron 30.0%
GTGAACAATGACAGTTTAAA+TGG + chr3_2:79696808-79696827 Msa0428740:intron 30.0%
CATTAAATATGCTTTAGCCT+GGG + chr3_2:79697075-79697094 Msa0428740:three_prime_UTR 30.0%
ATAAGATAATTGATTGCTGG+AGG - chr3_2:79697122-79697141 None:intergenic 30.0%
CATCAATTAAATTAAGCCCT+AGG - chr3_2:79697153-79697172 None:intergenic 30.0%
CTAGGGCTTAATTTAATTGA+TGG + chr3_2:79697151-79697170 Msa0428740:three_prime_UTR 30.0%
AATGGAATAACAACATAAGC+AGG - chr3_2:79697477-79697496 None:intergenic 30.0%
CTGGAAGAAAAAAATCAGAA+TGG - chr3_2:79697495-79697514 None:intergenic 30.0%
!!! TCTGATTTTTTTCTTCCAGT+TGG + chr3_2:79697496-79697515 Msa0428740:three_prime_UTR 30.0%
!!! GTGTTGCTTGGAATTTTTTT+AGG + chr3_2:79697657-79697676 Msa0428740:three_prime_UTR 30.0%
TCAAGTTAAAAGGTTCTTGA+TGG - chr3_2:79697727-79697746 None:intergenic 30.0%
TTTCCAATGATACTTAAAGG+AGG + chr3_2:79697874-79697893 Msa0428740:three_prime_UTR 30.0%
TTGGATGATTGGATAAGGTA+GGG - chr3_2:79694499-79694518 None:intergenic 35.0%
TTTGGATGATTGGATAAGGT+AGG - chr3_2:79694500-79694519 None:intergenic 35.0%
GGAATTGTGAATTCAATGGA+AGG - chr3_2:79694531-79694550 None:intergenic 35.0%
!! TTTTGAGGAGTAACAATTGG+TGG - chr3_2:79694568-79694587 None:intergenic 35.0%
AACAACAGCTTCAAATGTTC+TGG + chr3_2:79694703-79694722 Msa0428740:CDS 35.0%
TTCAATTTCTTGACGTTGGT+AGG - chr3_2:79694730-79694749 None:intergenic 35.0%
AATGAAAAGCTCACAAGCTT+TGG - chr3_2:79694862-79694881 None:intergenic 35.0%
ATATTGCTGCTGCTATTACT+AGG + chr3_2:79694949-79694968 Msa0428740:CDS 35.0%
TCATCTTTAATCTCGTCTCT+CGG - chr3_2:79695008-79695027 None:intergenic 35.0%
AGAGACGAGATTAAAGATGA+AGG + chr3_2:79695008-79695027 Msa0428740:CDS 35.0%
CCCATAGGAGGATAATAATA+AGG - chr3_2:79695074-79695093 None:intergenic 35.0%
ATCGAACAAAATGATACCTC+TGG - chr3_2:79695259-79695278 None:intergenic 35.0%
TGTGCTTAGAAAGAGATCTT+TGG + chr3_2:79695287-79695306 Msa0428740:intron 35.0%
GTGCTTAGAAAGAGATCTTT+GGG + chr3_2:79695288-79695307 Msa0428740:intron 35.0%
TGCTTAGAAAGAGATCTTTG+GGG + chr3_2:79695289-79695308 Msa0428740:intron 35.0%
!! CACTTTAAATTGGAGGTGTT+TGG - chr3_2:79695633-79695652 None:intergenic 35.0%
!! ACACTGTCACTTTAAATTGG+AGG - chr3_2:79695640-79695659 None:intergenic 35.0%
!! GCAACACTGTCACTTTAAAT+TGG - chr3_2:79695643-79695662 None:intergenic 35.0%
GTGTTGCATATGTATTTAGG+AGG + chr3_2:79695656-79695675 Msa0428740:intron 35.0%
! TTAGGAGGTCTATTTTGTGT+TGG + chr3_2:79695671-79695690 Msa0428740:intron 35.0%
!!! GGGAGTGTTAAAATGCATTT+TGG + chr3_2:79695752-79695771 Msa0428740:intron 35.0%
! AGTTGCATTTTCCATTTCAC+TGG + chr3_2:79696086-79696105 Msa0428740:intron 35.0%
! GTTGCATTTTCCATTTCACT+GGG + chr3_2:79696087-79696106 Msa0428740:intron 35.0%
CGAGATTTATATTTGCACTG+AGG + chr3_2:79696170-79696189 Msa0428740:intron 35.0%
!! TATTATGCTTTTGCTGTGAG+AGG + chr3_2:79696194-79696213 Msa0428740:intron 35.0%
ATTTATAGGTGTGGCTGATT+TGG + chr3_2:79696308-79696327 Msa0428740:intron 35.0%
!! AAACTTTGATGGCCTTGTTA+TGG + chr3_2:79696476-79696495 Msa0428740:intron 35.0%
GCATTAGGTTAGGACAATTA+TGG + chr3_2:79696618-79696637 Msa0428740:intron 35.0%
! TTGGTTGTTGTTGTTAGGTT+AGG + chr3_2:79696685-79696704 Msa0428740:intron 35.0%
TCTAATCAATGAATTGGGTC+AGG - chr3_2:79696741-79696760 None:intergenic 35.0%
!! TGATGTGTTTTTATCTGGGA+GGG + chr3_2:79696781-79696800 Msa0428740:intron 35.0%
CCAGGCTAAAGCATATTTAA+TGG - chr3_2:79697077-79697096 None:intergenic 35.0%
CCATTAAATATGCTTTAGCC+TGG + chr3_2:79697074-79697093 Msa0428740:three_prime_UTR 35.0%
CCACATTTACAAGATTATGC+AGG - chr3_2:79697223-79697242 None:intergenic 35.0%
CCTGCATAATCTTGTAAATG+TGG + chr3_2:79697220-79697239 Msa0428740:three_prime_UTR 35.0%
AATGGTTTCAATGCCTCATA+TGG + chr3_2:79697554-79697573 Msa0428740:three_prime_UTR 35.0%
AGCAAAAAGGAAACCATATG+AGG - chr3_2:79697570-79697589 None:intergenic 35.0%
GTCAAGACTTAAAAAGATGC+TGG + chr3_2:79697625-79697644 Msa0428740:three_prime_UTR 35.0%
TGTTTCACATATTGCACAGA+AGG - chr3_2:79697805-79697824 None:intergenic 35.0%
TCACCTCCTTTAAGTATCAT+TGG - chr3_2:79697880-79697899 None:intergenic 35.0%
!!! TTGGTGGCTGTTGATTTTGA+TGG - chr3_2:79694552-79694571 None:intergenic 40.0%
! GTGTTGGATATTGTTGTTGC+TGG - chr3_2:79694629-79694648 None:intergenic 40.0%
TGTTGGAGAAGATGTTGGAA+TGG - chr3_2:79694678-79694697 None:intergenic 40.0%
! GTTGTTGTTGGAGAAGATGT+TGG - chr3_2:79694683-79694702 None:intergenic 40.0%
! GAAGCTGTTGTTGTTGTTGT+TGG - chr3_2:79694695-79694714 None:intergenic 40.0%
CGTGTTCAATTTCTTGACGT+TGG - chr3_2:79694734-79694753 None:intergenic 40.0%
! CAAGCTTTGGCAAAGAGAAT+TGG - chr3_2:79694849-79694868 None:intergenic 40.0%
TTGAACTCACCATTCGTTCT+TGG + chr3_2:79694883-79694902 Msa0428740:CDS 40.0%
GCTTAGAAAGAGATCTTTGG+GGG + chr3_2:79695290-79695309 Msa0428740:intron 40.0%
! TTGGGGGTGAATTTTTGTCT+TGG + chr3_2:79695306-79695325 Msa0428740:intron 40.0%
TCAGTGGTATAGATGTCATG+TGG - chr3_2:79695529-79695548 None:intergenic 40.0%
CATCTATACCACTGACATGT+TGG + chr3_2:79695534-79695553 Msa0428740:intron 40.0%
! GAGGTGTTTGGTTCAATGTA+TGG - chr3_2:79695621-79695640 None:intergenic 40.0%
!! AGGTCTATTTTGTGTTGGTG+AGG + chr3_2:79695676-79695695 Msa0428740:intron 40.0%
!! TATTTTGTGTTGGTGAGGCT+TGG + chr3_2:79695681-79695700 Msa0428740:intron 40.0%
!! ATTTTGTGTTGGTGAGGCTT+GGG + chr3_2:79695682-79695701 Msa0428740:intron 40.0%
!! TCTACGATCCGTTTTTGACA+AGG - chr3_2:79696053-79696072 None:intergenic 40.0%
CTTTCTCATGCACAAACTAC+TGG + chr3_2:79696549-79696568 Msa0428740:intron 40.0%
! AAGGCTTGGTTGTTGTTGTT+AGG + chr3_2:79696680-79696699 Msa0428740:intron 40.0%
TCAATGAATTGGGTCAGGTT+GGG - chr3_2:79696736-79696755 None:intergenic 40.0%
ATCAATGAATTGGGTCAGGT+TGG - chr3_2:79696737-79696756 None:intergenic 40.0%
!! GTGATGTGTTTTTATCTGGG+AGG + chr3_2:79696780-79696799 Msa0428740:intron 40.0%
!! GATGTGTTTTTATCTGGGAG+GGG + chr3_2:79696782-79696801 Msa0428740:intron 40.0%
!! ATGTGTTTTTATCTGGGAGG+GGG + chr3_2:79696783-79696802 Msa0428740:intron 40.0%
!!! GTTATTTTAGGTGGTGGTAG+TGG + chr3_2:79697013-79697032 Msa0428740:intron 40.0%
TGGAAGCAGAAAATGCTACT+AGG - chr3_2:79697057-79697076 None:intergenic 40.0%
CTAAATCCTAACAGTTTCCC+AGG - chr3_2:79697095-79697114 None:intergenic 40.0%
TCATGTACATCTGTGCTTCA+AGG + chr3_2:79697411-79697430 Msa0428740:three_prime_UTR 40.0%
AACAAGACAAACAAGCCAAC+TGG - chr3_2:79697514-79697533 None:intergenic 40.0%
ATTGGATAAGGTAGGGCCTA+CGG - chr3_2:79694492-79694511 None:intergenic 45.0%
AGAAGATGTTGGAATGGTGG+TGG - chr3_2:79694672-79694691 None:intergenic 45.0%
TGGAGAAGATGTTGGAATGG+TGG - chr3_2:79694675-79694694 None:intergenic 45.0%
TGCGTGCTAATGGAAGTTGA+TGG - chr3_2:79694773-79694792 None:intergenic 45.0%
AGCATGAAGCCAAGAACGAA+TGG - chr3_2:79694895-79694914 None:intergenic 45.0%
CAACCTGCTGGAATGATGAT+TGG + chr3_2:79695095-79695114 Msa0428740:CDS 45.0%
TGAACATAAACACCGGTAGC+CGG - chr3_2:79695137-79695156 None:intergenic 45.0%
! GATGATGGTTCTTATGCTGG+TGG + chr3_2:79695200-79695219 Msa0428740:CDS 45.0%
GGACAACATCAATGACACGT+AGG + chr3_2:79695348-79695367 Msa0428740:intron 45.0%
!! TTTTGTGTTGGTGAGGCTTG+GGG + chr3_2:79695683-79695702 Msa0428740:intron 45.0%
!! TGCTTTTGCTGTGAGAGGAA+TGG + chr3_2:79696199-79696218 Msa0428740:intron 45.0%
ACTTAGTCGGGGGTTCATAT+AGG + chr3_2:79696509-79696528 Msa0428740:intron 45.0%
CTTAGTCGGGGGTTCATATA+GGG + chr3_2:79696510-79696529 Msa0428740:intron 45.0%
GGTTCATATAGGGAAGGTTC+TGG + chr3_2:79696520-79696539 Msa0428740:intron 45.0%
CATGTAACCGATCCCACTTA+GGG + chr3_2:79696653-79696672 Msa0428740:intron 45.0%
ATGTAACCGATCCCACTTAG+GGG + chr3_2:79696654-79696673 Msa0428740:intron 45.0%
CTTATTCCCCTAAGTGGGAT+CGG - chr3_2:79696663-79696682 None:intergenic 45.0%
!! CAAGCCTTATTCCCCTAAGT+GGG - chr3_2:79696668-79696687 None:intergenic 45.0%
! CAATGAATTGGGTCAGGTTG+GGG - chr3_2:79696735-79696754 None:intergenic 45.0%
ACTTGCACTCTCGCATAATG+TGG + chr3_2:79696895-79696914 Msa0428740:intron 45.0%
CTTTAGCCTGGGAAACTGTT+AGG + chr3_2:79697086-79697105 Msa0428740:three_prime_UTR 45.0%
TGCACAGAAGGACCATTGTT+CGG - chr3_2:79697793-79697812 None:intergenic 45.0%
!!! TGTTTTTATTAATTATTTAT+AGG + chr3_2:79696294-79696313 Msa0428740:intron 5.0%
GGGGAAAGAAAACAAGTCCC+AGG + chr3_2:79694463-79694482 Msa0428740:five_prime_UTR 50.0%
ATATCCAACACCTTCGCCCA+CGG + chr3_2:79694638-79694657 Msa0428740:CDS 50.0%
!! ATTGTTGGTGCTGCTGCTAG+TGG + chr3_2:79695044-79695063 Msa0428740:CDS 50.0%
ATTCCAGCAGGTTGTCCCAT+AGG - chr3_2:79695089-79695108 None:intergenic 50.0%
CGACCAATCATCATTCCAGC+AGG - chr3_2:79695101-79695120 None:intergenic 50.0%
AGGCGGCTGAACATAAACAC+CGG - chr3_2:79695144-79695163 None:intergenic 50.0%
TTATGTTCAGCCGCCTTCTC+AGG + chr3_2:79695148-79695167 Msa0428740:CDS 50.0%
TTGGCAGTCTGTTTGGCAGA+CGG + chr3_2:79695172-79695191 Msa0428740:CDS 50.0%
! GCGGATGATGGTTCTTATGC+TGG + chr3_2:79695197-79695216 Msa0428740:CDS 50.0%
GATGGTTCTTATGCTGGTGG+TGG + chr3_2:79695203-79695222 Msa0428740:CDS 50.0%
!! TCTTATGCTGGTGGTGGTGT+TGG + chr3_2:79695209-79695228 Msa0428740:CDS 50.0%
GGCGTACGTCTAACACATGT+TGG - chr3_2:79695440-79695459 None:intergenic 50.0%
GCAACGGCACTTCAGATTGA+AGG - chr3_2:79695461-79695480 None:intergenic 50.0%
TGCTGGTACCAACATGTCAG+TGG - chr3_2:79695545-79695564 None:intergenic 50.0%
AGTGTCAGGGTTTCACTGGT+TGG + chr3_2:79695706-79695725 Msa0428740:intron 50.0%
CCAACTAGCACCCAGTGAAA+TGG - chr3_2:79696100-79696119 None:intergenic 50.0%
CCATTTCACTGGGTGCTAGT+TGG + chr3_2:79696097-79696116 Msa0428740:intron 50.0%
! TTTGCTGTGAGAGGAATGGC+CGG + chr3_2:79696203-79696222 Msa0428740:intron 50.0%
CCTAAGTGGGATCGGTTACA+TGG - chr3_2:79696655-79696674 None:intergenic 50.0%
CCATGTAACCGATCCCACTT+AGG + chr3_2:79696652-79696671 Msa0428740:intron 50.0%
CGATCCCACTTAGGGGAATA+AGG + chr3_2:79696661-79696680 Msa0428740:intron 50.0%
!! CCAAGCCTTATTCCCCTAAG+TGG - chr3_2:79696669-79696688 None:intergenic 50.0%
CCACTTAGGGGAATAAGGCT+TGG + chr3_2:79696666-79696685 Msa0428740:intron 50.0%
!! TGTTTTTATCTGGGAGGGGG+TGG + chr3_2:79696786-79696805 Msa0428740:intron 50.0%
ATCTGTGCTTCAAGGCACAC+AGG + chr3_2:79697419-79697438 Msa0428740:three_prime_UTR 50.0%
CACTCAGCTGCTGAGCAAAA+AGG - chr3_2:79697583-79697602 None:intergenic 50.0%
! TGGACTTCTGCAGTGTTGCT+TGG + chr3_2:79697645-79697664 Msa0428740:three_prime_UTR 50.0%
!! GGTGCTGCTGCTGCTATTGT+TGG + chr3_2:79695029-79695048 Msa0428740:CDS 55.0%
ACAGACTGCCAAGCCTGAGA+AGG - chr3_2:79695164-79695183 None:intergenic 55.0%
CTCAGGCTTGGCAGTCTGTT+TGG + chr3_2:79695165-79695184 Msa0428740:CDS 55.0%
TGGCAGTCTGTTTGGCAGAC+GGG + chr3_2:79695173-79695192 Msa0428740:CDS 55.0%
GTTGGCAGTGGTCAGCACAA+TGG + chr3_2:79695227-79695246 Msa0428740:CDS 55.0%
AGTGGTCAGCACAATGGCGA+TGG + chr3_2:79695233-79695252 Msa0428740:CDS 55.0%
GTCGGGGGTTCATATAGGGA+AGG + chr3_2:79696514-79696533 Msa0428740:intron 55.0%
ACAGTCCATCAGCAGCAGTG+CGG - chr3_2:79697607-79697626 None:intergenic 55.0%
AACAAGTCCCAGGCTGCCGT+AGG + chr3_2:79694473-79694492 Msa0428740:five_prime_UTR 60.0%
! GGTGGTGGTGTAACTGCCGT+GGG - chr3_2:79694657-79694676 None:intergenic 60.0%
!! TGGTGGTGGTGTAACTGCCG+TGG - chr3_2:79694658-79694677 None:intergenic 60.0%
CCAGCAGGTTGTCCCATAGG+AGG - chr3_2:79695086-79695105 None:intergenic 60.0%
CCTCCTATGGGACAACCTGC+TGG + chr3_2:79695083-79695102 Msa0428740:CDS 60.0%
TGGTCGTCCCGCTGTTGATC+CGG + chr3_2:79695115-79695134 Msa0428740:CDS 60.0%
ACCGGTAGCCGGATCAACAG+CGG - chr3_2:79695126-79695145 None:intergenic 60.0%
TTCAGCCGCCTTCTCAGGCT+TGG + chr3_2:79695153-79695172 Msa0428740:CDS 60.0%
GACTGCCAAGCCTGAGAAGG+CGG - chr3_2:79695161-79695180 None:intergenic 60.0%
GTCTGTTTGGCAGACGGGAG+CGG + chr3_2:79695178-79695197 Msa0428740:CDS 60.0%
AGCACAATGGCGATGGCCAG+AGG + chr3_2:79695240-79695259 Msa0428740:CDS 60.0%
!! GTGAGGCTTGGGGAGTGTCA+GGG + chr3_2:79695693-79695712 Msa0428740:intron 60.0%
!! GGGGAGTGTCAGGGTTTCAC+TGG + chr3_2:79695702-79695721 Msa0428740:intron 60.0%
AGTGACCGCACTGCTGCTGA+TGG + chr3_2:79697599-79697618 Msa0428740:three_prime_UTR 60.0%
! ACTGCCGTGGGCGAAGGTGT+TGG - chr3_2:79694645-79694664 None:intergenic 65.0%
GGTGTAACTGCCGTGGGCGA+AGG - chr3_2:79694651-79694670 None:intergenic 65.0%
CCGGTAGCCGGATCAACAGC+GGG - chr3_2:79695125-79695144 None:intergenic 65.0%
CCCGCTGTTGATCCGGCTAC+CGG + chr3_2:79695122-79695141 Msa0428740:CDS 65.0%
TGGCAGACGGGAGCGGATGA+TGG + chr3_2:79695185-79695204 Msa0428740:CDS 65.0%
!! GCTGGTGGTGGTGTTGGCAG+TGG + chr3_2:79695215-79695234 Msa0428740:CDS 65.0%
!! GGTGAGGCTTGGGGAGTGTC+AGG + chr3_2:79695692-79695711 Msa0428740:intron 65.0%
GGTAGGGCCTACGGCAGCCT+GGG - chr3_2:79694483-79694502 None:intergenic 70.0%
AGGTAGGGCCTACGGCAGCC+TGG - chr3_2:79694484-79694503 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79694427 79697968 79694427 ID=Msa0428740;Name=Msa0428740
chr3_2 mRNA 79694427 79697968 79694427 ID=Msa0428740-mRNA-1;Parent=Msa0428740;Name=Msa0428740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|0|0.5|2|936|220
chr3_2 exon 79694427 79695261 79694427 ID=Msa0428740-mRNA-1:exon:21549;Parent=Msa0428740-mRNA-1
chr3_2 exon 79697023 79697968 79697023 ID=Msa0428740-mRNA-1:exon:21550;Parent=Msa0428740-mRNA-1
chr3_2 five_prime_UTR 79694427 79694608 79694427 ID=Msa0428740-mRNA-1:five_prime_utr;Parent=Msa0428740-mRNA-1
chr3_2 CDS 79694609 79695261 79694609 ID=Msa0428740-mRNA-1:cds;Parent=Msa0428740-mRNA-1
chr3_2 CDS 79697023 79697032 79697023 ID=Msa0428740-mRNA-1:cds;Parent=Msa0428740-mRNA-1
chr3_2 three_prime_UTR 79697033 79697968 79697033 ID=Msa0428740-mRNA-1:three_prime_utr;Parent=Msa0428740-mRNA-1
Gene Sequence

>Msa0428740

ATGGAGAACAACAACAACCAGCAACAACAATATCCAACACCTTCGCCCACGGCAGTTACACCACCACCATTCCAACATCTTCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCCTACCAACGTCAAGAAATTGAACACGTCAACGACTTCAAAAACCATCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCTGATGAAGACGTTCGAATGATTTCTGCAGAAGCACCAATTCTCTTTGCCAAAGCTTGTGAGCTTTTCATTCTTGAACTCACCATTCGTTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACTCTTCAGAAAAATGATATTGCTGCTGCTATTACTAGGACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGACGAGATTAAAGATGAAGGTGCTGCTGCTGCTATTGTTGGTGCTGCTGCTAGTGGTGTTCCTTATTATTATCCTCCTATGGGACAACCTGCTGGAATGATGATTGGTCGTCCCGCTGTTGATCCGGCTACCGGTGTTTATGTTCAGCCGCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACGGGAGCGGATGATGGTTCTTATGCTGGTGGTGGTGTTGGCAGTGGTCAGCACAATGGCGATGGCCAGAGGTGGTGGTAG

Protein sequence

>Msa0428740

MENNNNQQQQYPTPSPTAVTPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGAAAAIVGAAASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAGGGVGSGQHNGDGQRWW*