AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511930 MtrunA17_Chr3g0118801 93.548 217 14 0 1 217 1 217 3.82e-146 406
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511930 AT2G21530.1 59.231 130 52 1 82 211 81 209 1.01e-50 164

Find 51 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTCTTGTTATAGATT+TGG 0.263843 3_4:-61641132 Msa0511930:CDS
TTTAATGCATGATGAGATAT+TGG 0.293541 3_4:+61642256 None:intergenic
TCTGGGAGTTATATTACTTT+TGG 0.301923 3_4:-61641044 Msa0511930:intron
ATATCTCATCATGCATTAAA+TGG 0.304957 3_4:-61642253 Msa0511930:five_prime_UTR
AATGCCAGGGGACACTAATT+TGG 0.313943 3_4:-61640817 Msa0511930:intron
CAATATGCTTTGTATCAAAA+TGG 0.318784 3_4:+61640621 None:intergenic
ACTTCTATACCTGTTGCAAC+TGG 0.344018 3_4:+61641349 None:intergenic
CCATTGTCTAGTTCACCTTC+TGG 0.345009 3_4:+61640741 None:intergenic
GCAGAACATGTTTGAGACTT+TGG 0.358567 3_4:+61642025 None:intergenic
GTAGTTACCACTGTATCTTC+TGG 0.366490 3_4:-61641062 Msa0511930:CDS
CTTTGTGTAGCATTAGTTGT+TGG 0.401469 3_4:+61641827 None:intergenic
ATGAATAATTAAGTTACTCT+TGG 0.427390 3_4:+61642184 None:intergenic
GCATTGGAGTGTAATAAAAT+TGG 0.429187 3_4:+61641986 None:intergenic
TAATACTCTAGCAACAATAA+TGG 0.429297 3_4:-61642083 Msa0511930:exon
GCTCATATGAGCTAGCTTTG+TGG 0.429557 3_4:+61642144 None:intergenic
TTGCTAGAGTATTATTAGCT+TGG 0.439298 3_4:+61642092 None:intergenic
ATCACTAAATCAGCTTTCTC+TGG 0.443107 3_4:+61641373 None:intergenic
TTGATGCATGTATAGCTCCT+AGG 0.449624 3_4:+61641861 None:intergenic
TCAATTGTCACTTGTTTATG+TGG 0.455268 3_4:+61642227 None:intergenic
ATGAGCTAGCTTTGTGGTGT+TGG 0.455619 3_4:+61642150 None:intergenic
TTAGTGATCCCAGTTGCAAC+AGG 0.462387 3_4:-61641358 Msa0511930:intron
TTCAAGGCATATAGGCTTCA+AGG 0.462486 3_4:-61641528 Msa0511930:CDS
GATGGTGATTCAAGGCATAT+AGG 0.467110 3_4:-61641536 Msa0511930:CDS
AGCACCAATGGAACATTCAT+TGG 0.469041 3_4:-61641107 Msa0511930:CDS
GAACATTCATTGGTGACAAA+AGG 0.471831 3_4:-61641097 Msa0511930:CDS
TAGTTACCACTGTATCTTCT+GGG 0.476442 3_4:-61641061 Msa0511930:CDS
CAACTAATGCTACACAAAGA+TGG 0.490326 3_4:-61641823 Msa0511930:CDS
TGATAGGAGATGGTGATTCA+AGG 0.491582 3_4:-61641544 Msa0511930:intron
TAAGTTACTCTTGGTTGCGT+AGG 0.500424 3_4:+61642193 None:intergenic
ACTCTTGGTTGCGTAGGTCA+TGG 0.502974 3_4:+61642199 None:intergenic
GAAAGTTACTGAAGTGGCAT+TGG 0.511446 3_4:+61641970 None:intergenic
GTCACCAATGAATGTTCCAT+TGG 0.522297 3_4:+61641103 None:intergenic
GAGAAGGCTGCAGATACAGT+TGG 0.528528 3_4:-61640768 Msa0511930:CDS
GGTGACAAAAGGCTGAAACC+TGG 0.545814 3_4:-61641086 Msa0511930:CDS
AGATGGATTCTTGAACCAGT+TGG 0.550406 3_4:-61641806 Msa0511930:intron
ATAGATTTGGATAGCACCAA+TGG 0.560750 3_4:-61641119 Msa0511930:CDS
GGCTTCAAGGTTGAGAGACC+AGG 0.565164 3_4:-61641515 Msa0511930:CDS
GATACAGTGGTAACTACTCC+AGG 0.567838 3_4:+61641068 None:intergenic
TGTTATACATCCCAAATCAC+AGG 0.568456 3_4:-61641894 Msa0511930:CDS
CTTCTATACCTGTTGCAACT+GGG 0.577256 3_4:+61641350 None:intergenic
CAGGTGTGCATGCACGCATT+CGG 0.581165 3_4:-61641166 Msa0511930:CDS
TGTGTCGAAAATAGAAGAGA+AGG 0.593642 3_4:-61640784 Msa0511930:CDS
TGTAGCATTAGTTGTTGGAG+TGG 0.594055 3_4:+61641832 None:intergenic
ACTCTAGCAACAATAATGGA+AGG 0.614859 3_4:-61642079 Msa0511930:exon
ATCTAGAATGAAGTCACTGT+AGG 0.636581 3_4:-61641403 Msa0511930:intron
TGAACTGAAAGTTACTGAAG+TGG 0.650521 3_4:+61641964 None:intergenic
GATACAGTTGGAGAACCAGA+AGG 0.670779 3_4:-61640756 Msa0511930:CDS
GAAGTAATTTCATAAGCACC+TGG 0.674584 3_4:+61641497 None:intergenic
TTGGGATGTATAACACGACC+TGG 0.687791 3_4:+61641902 None:intergenic
ATAACTCCCAGAAGATACAG+TGG 0.690459 3_4:+61641055 None:intergenic
CCAGAAGGTGAACTAGACAA+TGG 0.701962 3_4:-61640741 Msa0511930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTAACAATTTTTCAAT+TGG + chr3_4:61641081-61641100 None:intergenic 15.0%
!! TTTAAGTATTTGTTTCAATA+TGG - chr3_4:61641210-61641229 Msa0511930:intron 15.0%
!!! GATTTTAACAATTTTTCAAT+TGG + chr3_4:61641081-61641100 None:intergenic 15.0%
!! TTTAAGTATTTGTTTCAATA+TGG - chr3_4:61641210-61641229 Msa0511930:intron 15.0%
!! ATGAATAATTAAGTTACTCT+TGG + chr3_4:61640645-61640664 None:intergenic 20.0%
!! TATTTGTAGTAATATCATGA+AGG + chr3_4:61641168-61641187 None:intergenic 20.0%
!! TTCATGATATTACTACAAAT+AGG - chr3_4:61641167-61641186 Msa0511930:CDS 20.0%
!! TGAAACAAATACTTAAAAAG+TGG + chr3_4:61641207-61641226 None:intergenic 20.0%
!! TTTGTAACTGTAAGAAAAAT+AGG + chr3_4:61641534-61641553 None:intergenic 20.0%
!! ACATAATTATTCAACAGAAA+AGG + chr3_4:61641845-61641864 None:intergenic 20.0%
!!! TATCATTTTGAAATTCTCTT+AGG + chr3_4:61641937-61641956 None:intergenic 20.0%
!! ATGAATAATTAAGTTACTCT+TGG + chr3_4:61640645-61640664 None:intergenic 20.0%
!! TATTTGTAGTAATATCATGA+AGG + chr3_4:61641168-61641187 None:intergenic 20.0%
!! TTCATGATATTACTACAAAT+AGG - chr3_4:61641167-61641186 Msa0511930:CDS 20.0%
!! TGAAACAAATACTTAAAAAG+TGG + chr3_4:61641207-61641226 None:intergenic 20.0%
!! TTTGTAACTGTAAGAAAAAT+AGG + chr3_4:61641534-61641553 None:intergenic 20.0%
!! ACATAATTATTCAACAGAAA+AGG + chr3_4:61641845-61641864 None:intergenic 20.0%
!!! TATCATTTTGAAATTCTCTT+AGG + chr3_4:61641937-61641956 None:intergenic 20.0%
! TTTAATGCATGATGAGATAT+TGG + chr3_4:61640573-61640592 None:intergenic 25.0%
! ATATCTCATCATGCATTAAA+TGG - chr3_4:61640573-61640592 Msa0511930:three_prime_UTR 25.0%
! TAATACTCTAGCAACAATAA+TGG - chr3_4:61640743-61640762 Msa0511930:CDS 25.0%
! CTCAATCAAGATAAGAAAAA+TGG + chr3_4:61641127-61641146 None:intergenic 25.0%
! CTTAAAAAGTGGTTAATTGA+GGG + chr3_4:61641196-61641215 None:intergenic 25.0%
! ACTTAAAAAGTGGTTAATTG+AGG + chr3_4:61641197-61641216 None:intergenic 25.0%
! CAATATGGTCAATATTAACA+AGG - chr3_4:61641225-61641244 Msa0511930:intron 25.0%
!!! ACAAAACCAATCATTTTGAT+AGG - chr3_4:61641266-61641285 Msa0511930:intron 25.0%
! AGCATAGTACATTAAGATTA+AGG + chr3_4:61641580-61641599 None:intergenic 25.0%
! CAAATTATATTGTGATTCTC+TGG + chr3_4:61641614-61641633 None:intergenic 25.0%
!! CAATCTTCTTGTTATAGATT+TGG - chr3_4:61641694-61641713 Msa0511930:intron 25.0%
! TTGAAATTCTCTTAGGAATA+TGG + chr3_4:61641930-61641949 None:intergenic 25.0%
! ATAATAGCAGAGGTTAAATA+TGG + chr3_4:61641988-61642007 None:intergenic 25.0%
! CAATATGCTTTGTATCAAAA+TGG + chr3_4:61642208-61642227 None:intergenic 25.0%
! TTTAATGCATGATGAGATAT+TGG + chr3_4:61640573-61640592 None:intergenic 25.0%
! ATATCTCATCATGCATTAAA+TGG - chr3_4:61640573-61640592 Msa0511930:three_prime_UTR 25.0%
! TAATACTCTAGCAACAATAA+TGG - chr3_4:61640743-61640762 Msa0511930:CDS 25.0%
! CTCAATCAAGATAAGAAAAA+TGG + chr3_4:61641127-61641146 None:intergenic 25.0%
! CTTAAAAAGTGGTTAATTGA+GGG + chr3_4:61641196-61641215 None:intergenic 25.0%
! ACTTAAAAAGTGGTTAATTG+AGG + chr3_4:61641197-61641216 None:intergenic 25.0%
! CAATATGGTCAATATTAACA+AGG - chr3_4:61641225-61641244 Msa0511930:intron 25.0%
!!! ACAAAACCAATCATTTTGAT+AGG - chr3_4:61641266-61641285 Msa0511930:intron 25.0%
! AGCATAGTACATTAAGATTA+AGG + chr3_4:61641580-61641599 None:intergenic 25.0%
! CAAATTATATTGTGATTCTC+TGG + chr3_4:61641614-61641633 None:intergenic 25.0%
!! CAATCTTCTTGTTATAGATT+TGG - chr3_4:61641694-61641713 Msa0511930:intron 25.0%
! TTGAAATTCTCTTAGGAATA+TGG + chr3_4:61641930-61641949 None:intergenic 25.0%
! ATAATAGCAGAGGTTAAATA+TGG + chr3_4:61641988-61642007 None:intergenic 25.0%
! CAATATGCTTTGTATCAAAA+TGG + chr3_4:61642208-61642227 None:intergenic 25.0%
! TCAATTGTCACTTGTTTATG+TGG + chr3_4:61640602-61640621 None:intergenic 30.0%
! TTGCTAGAGTATTATTAGCT+TGG + chr3_4:61640737-61640756 None:intergenic 30.0%
!!! GAGACTTTGGAATTTTTGTT+AGG + chr3_4:61640791-61640810 None:intergenic 30.0%
GCATTGGAGTGTAATAAAAT+TGG + chr3_4:61640843-61640862 None:intergenic 30.0%
!!! TTCACTTTTTCCTGTGATTT+GGG + chr3_4:61640945-61640964 None:intergenic 30.0%
!! AACAAGGTGTTTTATCACTT+TGG - chr3_4:61641241-61641260 Msa0511930:intron 30.0%
! ATCAGAATCAATGATTTGTG+TGG - chr3_4:61641362-61641381 Msa0511930:CDS 30.0%
! TGTTTTGTATTTACAGTGTC+AGG - chr3_4:61641641-61641660 Msa0511930:intron 30.0%
! TCTGGGAGTTATATTACTTT+TGG - chr3_4:61641782-61641801 Msa0511930:intron 30.0%
TATATAACCCTGTTTGTAGA+AGG - chr3_4:61641891-61641910 Msa0511930:CDS 30.0%
! TAGGAATATGGAGTCTTTTA+AGG + chr3_4:61641918-61641937 None:intergenic 30.0%
CAGAGGTTAAATATGGAATA+GGG + chr3_4:61641981-61642000 None:intergenic 30.0%
! TCAATTGTCACTTGTTTATG+TGG + chr3_4:61640602-61640621 None:intergenic 30.0%
! TTGCTAGAGTATTATTAGCT+TGG + chr3_4:61640737-61640756 None:intergenic 30.0%
!!! GAGACTTTGGAATTTTTGTT+AGG + chr3_4:61640791-61640810 None:intergenic 30.0%
GCATTGGAGTGTAATAAAAT+TGG + chr3_4:61640843-61640862 None:intergenic 30.0%
!!! TTCACTTTTTCCTGTGATTT+GGG + chr3_4:61640945-61640964 None:intergenic 30.0%
!! AACAAGGTGTTTTATCACTT+TGG - chr3_4:61641241-61641260 Msa0511930:intron 30.0%
! ATCAGAATCAATGATTTGTG+TGG - chr3_4:61641362-61641381 Msa0511930:CDS 30.0%
! TGTTTTGTATTTACAGTGTC+AGG - chr3_4:61641641-61641660 Msa0511930:intron 30.0%
! TCTGGGAGTTATATTACTTT+TGG - chr3_4:61641782-61641801 Msa0511930:intron 30.0%
TATATAACCCTGTTTGTAGA+AGG - chr3_4:61641891-61641910 Msa0511930:CDS 30.0%
! TAGGAATATGGAGTCTTTTA+AGG + chr3_4:61641918-61641937 None:intergenic 30.0%
CAGAGGTTAAATATGGAATA+GGG + chr3_4:61641981-61642000 None:intergenic 30.0%
! ACTCTAGCAACAATAATGGA+AGG - chr3_4:61640747-61640766 Msa0511930:CDS 35.0%
TGAACTGAAAGTTACTGAAG+TGG + chr3_4:61640865-61640884 None:intergenic 35.0%
TGTTATACATCCCAAATCAC+AGG - chr3_4:61640932-61640951 Msa0511930:intron 35.0%
!!! GTTCACTTTTTCCTGTGATT+TGG + chr3_4:61640946-61640965 None:intergenic 35.0%
CTTTGTGTAGCATTAGTTGT+TGG + chr3_4:61641002-61641021 None:intergenic 35.0%
CAACTAATGCTACACAAAGA+TGG - chr3_4:61641003-61641022 Msa0511930:intron 35.0%
! AGAAAGTGTAACTAACCAAC+TGG + chr3_4:61641038-61641057 None:intergenic 35.0%
CCATCTCCTATCAAAATGAT+TGG + chr3_4:61641275-61641294 None:intergenic 35.0%
!! CCAATCATTTTGATAGGAGA+TGG - chr3_4:61641272-61641291 Msa0511930:intron 35.0%
GAAGTAATTTCATAAGCACC+TGG + chr3_4:61641332-61641351 None:intergenic 35.0%
! ATCTAGAATGAAGTCACTGT+AGG - chr3_4:61641423-61641442 Msa0511930:intron 35.0%
ATCACTAAATCAGCTTTCTC+TGG + chr3_4:61641456-61641475 None:intergenic 35.0%
GATTAAGGAGCTTATTTCAG+TGG + chr3_4:61641565-61641584 None:intergenic 35.0%
ATAGATTTGGATAGCACCAA+TGG - chr3_4:61641707-61641726 Msa0511930:intron 35.0%
! GAACATTCATTGGTGACAAA+AGG - chr3_4:61641729-61641748 Msa0511930:intron 35.0%
TAGTTACCACTGTATCTTCT+GGG - chr3_4:61641765-61641784 Msa0511930:intron 35.0%
TTAAGGTCCTTCTACAAACA+GGG + chr3_4:61641901-61641920 None:intergenic 35.0%
! TTTAAGGTCCTTCTACAAAC+AGG + chr3_4:61641902-61641921 None:intergenic 35.0%
GCAGAGGTTAAATATGGAAT+AGG + chr3_4:61641982-61642001 None:intergenic 35.0%
! TCTCTTCTATTTTCGACACA+CGG + chr3_4:61642042-61642061 None:intergenic 35.0%
TGTGTCGAAAATAGAAGAGA+AGG - chr3_4:61642042-61642061 Msa0511930:CDS 35.0%
! ACTCTAGCAACAATAATGGA+AGG - chr3_4:61640747-61640766 Msa0511930:CDS 35.0%
TGAACTGAAAGTTACTGAAG+TGG + chr3_4:61640865-61640884 None:intergenic 35.0%
TGTTATACATCCCAAATCAC+AGG - chr3_4:61640932-61640951 Msa0511930:intron 35.0%
!!! GTTCACTTTTTCCTGTGATT+TGG + chr3_4:61640946-61640965 None:intergenic 35.0%
CTTTGTGTAGCATTAGTTGT+TGG + chr3_4:61641002-61641021 None:intergenic 35.0%
CAACTAATGCTACACAAAGA+TGG - chr3_4:61641003-61641022 Msa0511930:intron 35.0%
! AGAAAGTGTAACTAACCAAC+TGG + chr3_4:61641038-61641057 None:intergenic 35.0%
CCATCTCCTATCAAAATGAT+TGG + chr3_4:61641275-61641294 None:intergenic 35.0%
!! CCAATCATTTTGATAGGAGA+TGG - chr3_4:61641272-61641291 Msa0511930:intron 35.0%
GAAGTAATTTCATAAGCACC+TGG + chr3_4:61641332-61641351 None:intergenic 35.0%
! ATCTAGAATGAAGTCACTGT+AGG - chr3_4:61641423-61641442 Msa0511930:intron 35.0%
ATCACTAAATCAGCTTTCTC+TGG + chr3_4:61641456-61641475 None:intergenic 35.0%
GATTAAGGAGCTTATTTCAG+TGG + chr3_4:61641565-61641584 None:intergenic 35.0%
ATAGATTTGGATAGCACCAA+TGG - chr3_4:61641707-61641726 Msa0511930:intron 35.0%
! GAACATTCATTGGTGACAAA+AGG - chr3_4:61641729-61641748 Msa0511930:intron 35.0%
TAGTTACCACTGTATCTTCT+GGG - chr3_4:61641765-61641784 Msa0511930:intron 35.0%
TTAAGGTCCTTCTACAAACA+GGG + chr3_4:61641901-61641920 None:intergenic 35.0%
! TTTAAGGTCCTTCTACAAAC+AGG + chr3_4:61641902-61641921 None:intergenic 35.0%
GCAGAGGTTAAATATGGAAT+AGG + chr3_4:61641982-61642001 None:intergenic 35.0%
! TCTCTTCTATTTTCGACACA+CGG + chr3_4:61642042-61642061 None:intergenic 35.0%
TGTGTCGAAAATAGAAGAGA+AGG - chr3_4:61642042-61642061 Msa0511930:CDS 35.0%
TAAGTTACTCTTGGTTGCGT+AGG + chr3_4:61640636-61640655 None:intergenic 40.0%
! GCAGAACATGTTTGAGACTT+TGG + chr3_4:61640804-61640823 None:intergenic 40.0%
GAAAGTTACTGAAGTGGCAT+TGG + chr3_4:61640859-61640878 None:intergenic 40.0%
!!! TGCTTTCTTTTTCAGCAACC+AGG - chr3_4:61640906-61640925 Msa0511930:intron 40.0%
TCACAGGAAAAAGTGAACCT+AGG - chr3_4:61640948-61640967 Msa0511930:intron 40.0%
TTGATGCATGTATAGCTCCT+AGG + chr3_4:61640968-61640987 None:intergenic 40.0%
TGTAGCATTAGTTGTTGGAG+TGG + chr3_4:61640997-61641016 None:intergenic 40.0%
! AGATGGATTCTTGAACCAGT+TGG - chr3_4:61641020-61641039 Msa0511930:intron 40.0%
TGATAGGAGATGGTGATTCA+AGG - chr3_4:61641282-61641301 Msa0511930:intron 40.0%
GATGGTGATTCAAGGCATAT+AGG - chr3_4:61641290-61641309 Msa0511930:intron 40.0%
TTCAAGGCATATAGGCTTCA+AGG - chr3_4:61641298-61641317 Msa0511930:intron 40.0%
CTTCTATACCTGTTGCAACT+GGG + chr3_4:61641479-61641498 None:intergenic 40.0%
ACTTCTATACCTGTTGCAAC+TGG + chr3_4:61641480-61641499 None:intergenic 40.0%
AGCACCAATGGAACATTCAT+TGG - chr3_4:61641719-61641738 Msa0511930:intron 40.0%
GTCACCAATGAATGTTCCAT+TGG + chr3_4:61641726-61641745 None:intergenic 40.0%
GTAGTTACCACTGTATCTTC+TGG - chr3_4:61641764-61641783 Msa0511930:intron 40.0%
ATAACTCCCAGAAGATACAG+TGG + chr3_4:61641774-61641793 None:intergenic 40.0%
CTCTGCTATTATGAATGCCA+GGG - chr3_4:61641996-61642015 Msa0511930:CDS 40.0%
TCTGCTATTATGAATGCCAG+GGG - chr3_4:61641997-61642016 Msa0511930:CDS 40.0%
TAAGTTACTCTTGGTTGCGT+AGG + chr3_4:61640636-61640655 None:intergenic 40.0%
! GCAGAACATGTTTGAGACTT+TGG + chr3_4:61640804-61640823 None:intergenic 40.0%
GAAAGTTACTGAAGTGGCAT+TGG + chr3_4:61640859-61640878 None:intergenic 40.0%
!!! TGCTTTCTTTTTCAGCAACC+AGG - chr3_4:61640906-61640925 Msa0511930:intron 40.0%
TCACAGGAAAAAGTGAACCT+AGG - chr3_4:61640948-61640967 Msa0511930:intron 40.0%
TTGATGCATGTATAGCTCCT+AGG + chr3_4:61640968-61640987 None:intergenic 40.0%
TGTAGCATTAGTTGTTGGAG+TGG + chr3_4:61640997-61641016 None:intergenic 40.0%
! AGATGGATTCTTGAACCAGT+TGG - chr3_4:61641020-61641039 Msa0511930:intron 40.0%
TGATAGGAGATGGTGATTCA+AGG - chr3_4:61641282-61641301 Msa0511930:intron 40.0%
GATGGTGATTCAAGGCATAT+AGG - chr3_4:61641290-61641309 Msa0511930:intron 40.0%
TTCAAGGCATATAGGCTTCA+AGG - chr3_4:61641298-61641317 Msa0511930:intron 40.0%
CTTCTATACCTGTTGCAACT+GGG + chr3_4:61641479-61641498 None:intergenic 40.0%
ACTTCTATACCTGTTGCAAC+TGG + chr3_4:61641480-61641499 None:intergenic 40.0%
AGCACCAATGGAACATTCAT+TGG - chr3_4:61641719-61641738 Msa0511930:intron 40.0%
GTCACCAATGAATGTTCCAT+TGG + chr3_4:61641726-61641745 None:intergenic 40.0%
GTAGTTACCACTGTATCTTC+TGG - chr3_4:61641764-61641783 Msa0511930:intron 40.0%
ATAACTCCCAGAAGATACAG+TGG + chr3_4:61641774-61641793 None:intergenic 40.0%
CTCTGCTATTATGAATGCCA+GGG - chr3_4:61641996-61642015 Msa0511930:CDS 40.0%
TCTGCTATTATGAATGCCAG+GGG - chr3_4:61641997-61642016 Msa0511930:CDS 40.0%
!! ATGAGCTAGCTTTGTGGTGT+TGG + chr3_4:61640679-61640698 None:intergenic 45.0%
!! GCTCATATGAGCTAGCTTTG+TGG + chr3_4:61640685-61640704 None:intergenic 45.0%
TTGGGATGTATAACACGACC+TGG + chr3_4:61640927-61640946 None:intergenic 45.0%
TTAGTGATCCCAGTTGCAAC+AGG - chr3_4:61641468-61641487 Msa0511930:intron 45.0%
GATACAGTGGTAACTACTCC+AGG + chr3_4:61641761-61641780 None:intergenic 45.0%
CCTGGCATTCATAATAGCAG+AGG + chr3_4:61641998-61642017 None:intergenic 45.0%
CCTCTGCTATTATGAATGCC+AGG - chr3_4:61641995-61642014 Msa0511930:CDS 45.0%
AATGCCAGGGGACACTAATT+TGG - chr3_4:61642009-61642028 Msa0511930:CDS 45.0%
ATAGCCAAATTAGTGTCCCC+TGG + chr3_4:61642016-61642035 None:intergenic 45.0%
GATACAGTTGGAGAACCAGA+AGG - chr3_4:61642070-61642089 Msa0511930:exon 45.0%
! CCATTGTCTAGTTCACCTTC+TGG + chr3_4:61642088-61642107 None:intergenic 45.0%
CCAGAAGGTGAACTAGACAA+TGG - chr3_4:61642085-61642104 Msa0511930:exon 45.0%
!! ATGAGCTAGCTTTGTGGTGT+TGG + chr3_4:61640679-61640698 None:intergenic 45.0%
!! GCTCATATGAGCTAGCTTTG+TGG + chr3_4:61640685-61640704 None:intergenic 45.0%
TTGGGATGTATAACACGACC+TGG + chr3_4:61640927-61640946 None:intergenic 45.0%
TTAGTGATCCCAGTTGCAAC+AGG - chr3_4:61641468-61641487 Msa0511930:intron 45.0%
GATACAGTGGTAACTACTCC+AGG + chr3_4:61641761-61641780 None:intergenic 45.0%
CCTGGCATTCATAATAGCAG+AGG + chr3_4:61641998-61642017 None:intergenic 45.0%
CCTCTGCTATTATGAATGCC+AGG - chr3_4:61641995-61642014 Msa0511930:CDS 45.0%
AATGCCAGGGGACACTAATT+TGG - chr3_4:61642009-61642028 Msa0511930:CDS 45.0%
ATAGCCAAATTAGTGTCCCC+TGG + chr3_4:61642016-61642035 None:intergenic 45.0%
GATACAGTTGGAGAACCAGA+AGG - chr3_4:61642070-61642089 Msa0511930:exon 45.0%
! CCATTGTCTAGTTCACCTTC+TGG + chr3_4:61642088-61642107 None:intergenic 45.0%
CCAGAAGGTGAACTAGACAA+TGG - chr3_4:61642085-61642104 Msa0511930:exon 45.0%
ACTCTTGGTTGCGTAGGTCA+TGG + chr3_4:61640630-61640649 None:intergenic 50.0%
GGTGACAAAAGGCTGAAACC+TGG - chr3_4:61641740-61641759 Msa0511930:intron 50.0%
GAGAAGGCTGCAGATACAGT+TGG - chr3_4:61642058-61642077 Msa0511930:CDS 50.0%
ACTCTTGGTTGCGTAGGTCA+TGG + chr3_4:61640630-61640649 None:intergenic 50.0%
GGTGACAAAAGGCTGAAACC+TGG - chr3_4:61641740-61641759 Msa0511930:intron 50.0%
GAGAAGGCTGCAGATACAGT+TGG - chr3_4:61642058-61642077 Msa0511930:CDS 50.0%
GGCTTCAAGGTTGAGAGACC+AGG - chr3_4:61641311-61641330 Msa0511930:intron 55.0%
CAGGTGTGCATGCACGCATT+CGG - chr3_4:61641660-61641679 Msa0511930:intron 55.0%
GGCTTCAAGGTTGAGAGACC+AGG - chr3_4:61641311-61641330 Msa0511930:intron 55.0%
CAGGTGTGCATGCACGCATT+CGG - chr3_4:61641660-61641679 Msa0511930:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61640570 61642278 61640570 ID=Msa0511930;Name=Msa0511930
chr3_4 mRNA 61640570 61642278 61640570 ID=Msa0511930-mRNA-1;Parent=Msa0511930;Name=Msa0511930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=192|1|1|1|1|1|5|128|228
chr3_4 exon 61640570 61640831 61640570 ID=Msa0511930-mRNA-1:exon:15097;Parent=Msa0511930-mRNA-1
chr3_4 exon 61641045 61641191 61641045 ID=Msa0511930-mRNA-1:exon:15096;Parent=Msa0511930-mRNA-1
chr3_4 exon 61641359 61641419 61641359 ID=Msa0511930-mRNA-1:exon:15095;Parent=Msa0511930-mRNA-1
chr3_4 exon 61641496 61641560 61641496 ID=Msa0511930-mRNA-1:exon:15094;Parent=Msa0511930-mRNA-1
chr3_4 exon 61641807 61642278 61641807 ID=Msa0511930-mRNA-1:exon:15093;Parent=Msa0511930-mRNA-1
chr3_4 five_prime_UTR 61642087 61642278 61642087 ID=Msa0511930-mRNA-1:five_prime_utr;Parent=Msa0511930-mRNA-1
chr3_4 CDS 61641807 61642086 61641807 ID=Msa0511930-mRNA-1:cds;Parent=Msa0511930-mRNA-1
chr3_4 CDS 61641496 61641560 61641496 ID=Msa0511930-mRNA-1:cds;Parent=Msa0511930-mRNA-1
chr3_4 CDS 61641359 61641419 61641359 ID=Msa0511930-mRNA-1:cds;Parent=Msa0511930-mRNA-1
chr3_4 CDS 61641045 61641191 61641045 ID=Msa0511930-mRNA-1:cds;Parent=Msa0511930-mRNA-1
chr3_4 CDS 61640698 61640831 61640698 ID=Msa0511930-mRNA-1:cds;Parent=Msa0511930-mRNA-1
chr3_4 three_prime_UTR 61640570 61640697 61640570 ID=Msa0511930-mRNA-1:three_prime_utr;Parent=Msa0511930-mRNA-1
Gene Sequence

>Msa0511930

ATGGAAGGCATTGCAAAATCTCTCTACCTAACAAAAATTCCAAAGTCTCAAACATGTTCTGCTTCTCTGTTGAACTCACCAATTTTATTACACTCCAATGCCACTTCAGTAACTTTCAGTTCAGCAACAAATCATCTGCACAAGTGCTTTCTTTTTCAGCAACCAGGTCGTGTTATACATCCCAAATCACAGGAAAAAGTGAACCTAGGAGCTATACATGCATCAAAAGCTACCACTCCAACAACTAATGCTACACAAAGATGGATTCTTGAACCAGTTGGAGATGGTGATTCAAGGCATATAGGCTTCAAGGTTGAGAGACCAGGTGCTTATGAAATTACTTCTAATGAAGTCACTGTAGGACGTGTTCCAGAGAAAGCTGATTTAGTGATCCCAGTTGCAACAGTGTCAGGTGTGCATGCACGCATTCGGATGAAACAAGACAATCTTCTTGTTATAGATTTGGATAGCACCAATGGAACATTCATTGGTGACAAAAGGCTGAAACCTGGAGTAGTTACCACTGTATCTTCTGGGAGTTATATTACTTTTGGGGACACTAATTTGGCTATGTTCCGTGTGTCGAAAATAGAAGAGAAGGCTGCAGATACAGTTGGAGAACCAGAAGGTGAACTAGACAATGGTGACAAATCTGATAGTACTGAAACAAGTTCAACTTCTAGTTGA

Protein sequence

>Msa0511930

MEGIAKSLYLTKIPKSQTCSASLLNSPILLHSNATSVTFSSATNHLHKCFLFQQPGRVIHPKSQEKVNLGAIHASKATTPTTNATQRWILEPVGDGDSRHIGFKVERPGAYEITSNEVTVGRVPEKADLVIPVATVSGVHARIRMKQDNLLVIDLDSTNGTFIGDKRLKPGVVTTVSSGSYITFGDTNLAMFRVSKIEEKAADTVGEPEGELDNGDKSDSTETSSTSS*