AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376230 MtrunA17_Chr1g0212681 99.145 234 2 0 1 234 1 234 4.55e-177 485
Msa1376230 MtrunA17_Chr7g0222751 37.696 191 118 1 45 234 50 240 2.76e-45 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376230 AT2G39470.1 60.084 238 91 2 1 234 1 238 6.69e-97 283
Msa1376230 AT2G39470.2 60.593 236 85 3 1 234 1 230 5.16e-95 278
Msa1376230 AT2G39470.3 58.824 170 62 3 1 168 1 164 3.25e-60 187
Msa1376230 AT3G55330.1 37.017 181 112 2 53 231 48 228 1.01e-41 142

Find 84 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTTTCACAATTGAAAT+TGG 0.198890 tig0019789:-40084 None:intergenic
ATATTGTTGGTCTTTGGTTT+GGG 0.234233 tig0019789:-38797 None:intergenic
TATATTGTTGGTCTTTGGTT+TGG 0.266254 tig0019789:-38798 None:intergenic
ATATATCAGATATCGTAAAT+AGG 0.271891 tig0019789:-39897 None:intergenic
TAATCAGGTTATTACTGATT+TGG 0.282582 tig0019789:+38755 Msa1376230:intron
CACAAAATGCATGGAAGTTA+AGG 0.289530 tig0019789:+40135 Msa1376230:three_prime_UTR
GAAGAAAGATATCAGAGATT+TGG 0.298345 tig0019789:+38645 Msa1376230:CDS
TGTCATATATTGTTGGTCTT+TGG 0.307687 tig0019789:-38803 None:intergenic
AAGTGGTAGCAGACTCCTTT+AGG 0.329582 tig0019789:+39559 Msa1376230:CDS
TTCCCCAGGAATTTGACTTC+AGG 0.336858 tig0019789:+38551 Msa1376230:intron
AAGAAAGATATCAGAGATTT+GGG 0.360869 tig0019789:+38646 Msa1376230:CDS
CACATTCAAATCATTTGCTT+CGG 0.366493 tig0019789:+37707 Msa1376230:CDS
TGAATGCAGCGGACGATAGA+TGG 0.372410 tig0019789:+38936 Msa1376230:intron
TCTTGCATGTCATATATTGT+TGG 0.373534 tig0019789:-38810 None:intergenic
CTGATATCTTTCTTCTCAGT+TGG 0.377354 tig0019789:-38637 None:intergenic
GCCTTGTTATATAATCTGTT+TGG 0.394580 tig0019789:-39945 None:intergenic
CTTTAAAATATAGATCTGTT+TGG 0.397300 tig0019789:-39860 None:intergenic
ATTTACAGTTACAAAATGTA+AGG 0.400765 tig0019789:+38602 Msa1376230:CDS
TATATCAGATATCGTAAATA+GGG 0.402152 tig0019789:-39896 None:intergenic
TTTCTTCTTGCTCTTTAACC+TGG 0.402638 tig0019789:+37558 Msa1376230:CDS
TCCCCAGGAATTTGACTTCA+GGG 0.410418 tig0019789:+38552 Msa1376230:intron
ACGACACTTGCCATAGGAAA+TGG 0.413180 tig0019789:+39020 Msa1376230:CDS
AGACCACTGCTGTTGGGTAT+AGG 0.414717 tig0019789:+37967 Msa1376230:CDS
AAATCATGAACACACCTTAT+GGG 0.424094 tig0019789:-37597 None:intergenic
TATGAATCATGATCATGAAT+AGG 0.431014 tig0019789:+39917 Msa1376230:three_prime_UTR
CATAAACATCACCACTTAAG+AGG 0.438219 tig0019789:+40004 Msa1376230:three_prime_UTR
CTTACATTTATCCCTCAGAT+TGG 0.440474 tig0019789:+38173 Msa1376230:CDS
AGATTACTTACCATTTCCTA+TGG 0.448627 tig0019789:-39030 None:intergenic
CCAACAGCAGTGGTCTTCTC+TGG 0.449995 tig0019789:-37960 None:intergenic
ATTTGGTGTCTTGGTCGTCT+TGG 0.459995 tig0019789:-40103 None:intergenic
TATACCACTCTTCACCACTA+TGG 0.462456 tig0019789:+37532 Msa1376230:exon
GTGATGTGGCTAGGAGTTTG+TGG 0.466897 tig0019789:-37449 None:intergenic
CATTTATCCCTCAGATTGGA+AGG 0.470985 tig0019789:+38177 Msa1376230:CDS
TCTGTTTGGATTTGGTGTCT+TGG 0.479619 tig0019789:-40112 None:intergenic
CAGAGAAGACCACTGCTGTT+GGG 0.485011 tig0019789:+37961 Msa1376230:CDS
TCAGCTAAGAGTGAGTTTGC+TGG 0.485092 tig0019789:-38012 None:intergenic
ATCATAATCACCTCTTCCAT+TGG 0.486106 tig0019789:-38670 None:intergenic
TTAGTATCATCAAGAAAGAA+AGG 0.498552 tig0019789:-40060 None:intergenic
TAGGCTCTTACTTTCTGTAC+TGG 0.501571 tig0019789:-37782 None:intergenic
ACAAAAGATCGGTATCTGTC+TGG 0.502898 tig0019789:-38130 None:intergenic
ATATTTCAATCTTGATGTGT+AGG 0.505775 tig0019789:-39634 None:intergenic
ACAAAATGCATGGAAGTTAA+GGG 0.508559 tig0019789:+40136 Msa1376230:three_prime_UTR
TTCATCCTACTTATCCCATA+AGG 0.512519 tig0019789:+37583 Msa1376230:CDS
GTTATATAATCTGTTTGGCA+AGG 0.516645 tig0019789:-39940 None:intergenic
TTAGACCTTGTGATGTGGCT+AGG 0.516779 tig0019789:-37458 None:intergenic
TCCTATGGCAAGTGTCGTAA+AGG 0.521687 tig0019789:-39015 None:intergenic
AAGATACTACACATTAATTG+TGG 0.525487 tig0019789:+39494 Msa1376230:CDS
CCAGAGAAGACCACTGCTGT+TGG 0.535568 tig0019789:+37960 Msa1376230:CDS
TATCAGAGATTTGGGTCCAA+TGG 0.538055 tig0019789:+38654 Msa1376230:CDS
TAACAATGTCTCTTGTGCAA+TGG 0.546990 tig0019789:+37750 Msa1376230:CDS
ACACACCTTATGGGATAAGT+AGG 0.562591 tig0019789:-37588 None:intergenic
AGATTTGGGTCCAATGGAAG+AGG 0.563882 tig0019789:+38660 Msa1376230:CDS
AGTACGAGATCAGCTTAAAG+TGG 0.565699 tig0019789:+39542 Msa1376230:CDS
CCACTGCTGTTGGGTATAGG+AGG 0.567018 tig0019789:+37970 Msa1376230:CDS
TCAGATGTCAAGGAGCCTAA+AGG 0.574123 tig0019789:-39574 None:intergenic
CCAAACAGACACAAAATGCA+TGG 0.575218 tig0019789:+40126 Msa1376230:three_prime_UTR
AGATACTACACATTAATTGT+GGG 0.575783 tig0019789:+39495 Msa1376230:CDS
CGAAGCAAATGATTTGAATG+TGG 0.577902 tig0019789:-37706 None:intergenic
ATGTAACATTTCAGATGTCA+AGG 0.578967 tig0019789:-39584 None:intergenic
TATTGTTGGTCTTTGGTTTG+GGG 0.579380 tig0019789:-38796 None:intergenic
TGGAAAACATTATTATACAA+TGG 0.592201 tig0019789:+38956 Msa1376230:CDS
TTTACAGTTACAAAATGTAA+GGG 0.596231 tig0019789:+38603 Msa1376230:CDS
TGATGTTTATGTGACTTTGA+AGG 0.599429 tig0019789:-39992 None:intergenic
CTTCATAGTCGACAAAAGAT+CGG 0.601736 tig0019789:-38141 None:intergenic
GGATAAGTAGGATGAAGTCC+AGG 0.607100 tig0019789:-37576 None:intergenic
GCAAACTCACTCTTAGCTGA+AGG 0.608621 tig0019789:+38015 Msa1376230:CDS
GCAAGAAGAAACTACCATAG+TGG 0.608868 tig0019789:-37546 None:intergenic
AACAATATATGACATGCAAG+AGG 0.615986 tig0019789:+38812 Msa1376230:CDS
AGATGGAAAGAAATAGTGAG+TGG 0.619866 tig0019789:-37495 None:intergenic
TCCTTTACGACACTTGCCAT+AGG 0.621482 tig0019789:+39014 Msa1376230:CDS
TATGGCAAGTGTCGTAAAGG+AGG 0.624367 tig0019789:-39012 None:intergenic
AAACTCCTAGCCACATCACA+AGG 0.625733 tig0019789:+37453 Msa1376230:five_prime_UTR
AGAATTTAGACCTTGTGATG+TGG 0.627994 tig0019789:-37463 None:intergenic
CTGAGAATTACAGAAGGACG+AGG 0.638190 tig0019789:+39794 Msa1376230:three_prime_UTR
AGTTTCTGTATTGCATACAG+AGG 0.646416 tig0019789:+39718 Msa1376230:three_prime_UTR
TGGGAGCCAATGAAAGACGA+TGG 0.646942 tig0019789:+39514 Msa1376230:CDS
ATGCAATGTATGTGTCAAAG+TGG 0.650682 tig0019789:-39745 None:intergenic
TGCAATGTATGTGTCAAAGT+GGG 0.656188 tig0019789:-39744 None:intergenic
ACTACCATAGTGGTGAAGAG+TGG 0.666095 tig0019789:-37536 None:intergenic
CCTCCTATACCCAACAGCAG+TGG 0.668075 tig0019789:-37970 None:intergenic
GCCAAACAGATTATATAACA+AGG 0.675376 tig0019789:+39944 Msa1376230:three_prime_UTR
ATGAAACCAATGATAGCATG+TGG 0.678879 tig0019789:-40182 None:intergenic
CAATCACTGAGAATTACAGA+AGG 0.696152 tig0019789:+39788 Msa1376230:three_prime_UTR
AATGTATGTGTCAAAGTGGG+CGG 0.746612 tig0019789:-39741 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATAACATCTTTGTT+TGG + tig0019789:38040-38059 Msa1376230:intron 20.0%
!! GATAGTTAATATGAAAACAA+GGG - tig0019789:38237-38256 None:intergenic 20.0%
!! TGATAGTTAATATGAAAACA+AGG - tig0019789:38238-38257 None:intergenic 20.0%
!!! TTTTAAAAAGACTGATAATG+AGG - tig0019789:38280-38299 None:intergenic 20.0%
!! TTTGCGTAACTATATTAATA+AGG + tig0019789:38373-38392 Msa1376230:intron 20.0%
!! TTGCGTAACTATATTAATAA+GGG + tig0019789:38374-38393 Msa1376230:intron 20.0%
!! ATTTACAGTTACAAAATGTA+AGG + tig0019789:38602-38621 Msa1376230:CDS 20.0%
!! TTTACAGTTACAAAATGTAA+GGG + tig0019789:38603-38622 Msa1376230:CDS 20.0%
!!! TTCTTTTGGAAAAAACAAAT+TGG - tig0019789:38863-38882 None:intergenic 20.0%
!!! TTTTTCCAAAAGAATATCTT+AGG + tig0019789:38869-38888 Msa1376230:intron 20.0%
!! TGGAAAACATTATTATACAA+TGG + tig0019789:38956-38975 Msa1376230:CDS 20.0%
!! TCAGTATAATATAATAATGC+TGG + tig0019789:39380-39399 Msa1376230:intron 20.0%
!!! CTTTAAAATATAGATCTGTT+TGG - tig0019789:39863-39882 None:intergenic 20.0%
!! TATATCAGATATCGTAAATA+GGG - tig0019789:39899-39918 None:intergenic 20.0%
!! ATATATCAGATATCGTAAAT+AGG - tig0019789:39900-39919 None:intergenic 20.0%
!! TCTGGTATTTCTACAAAATA+AGG - tig0019789:38115-38134 None:intergenic 25.0%
! AAGAAAGATATCAGAGATTT+GGG + tig0019789:38646-38665 Msa1376230:CDS 25.0%
! TTAGATTCTGTCTTAATGTA+TGG + tig0019789:38693-38712 Msa1376230:intron 25.0%
!! TAATCAGGTTATTACTGATT+TGG + tig0019789:38755-38774 Msa1376230:intron 25.0%
!! CAAAACCTAAGATATTCTTT+TGG - tig0019789:38877-38896 None:intergenic 25.0%
!!! AAGAATATCTTAGGTTTTGA+TGG + tig0019789:38878-38897 Msa1376230:intron 25.0%
!! TTCTTTGAGAGAATATTTGT+TGG - tig0019789:39081-39100 None:intergenic 25.0%
! TAGTTGTTGTATTATCTAAC+AGG - tig0019789:39131-39150 None:intergenic 25.0%
!! TTCTTGTTGTATTATCTAAC+AGG - tig0019789:39155-39174 None:intergenic 25.0%
! AAAATGATTATAAGTGACAC+AGG + tig0019789:39187-39206 Msa1376230:intron 25.0%
!! GAATGTTATTAGCTTACATA+AGG - tig0019789:39462-39481 None:intergenic 25.0%
! TAATAACATTCACTTTGTAC+AGG + tig0019789:39471-39490 Msa1376230:intron 25.0%
! AAGATACTACACATTAATTG+TGG + tig0019789:39494-39513 Msa1376230:CDS 25.0%
! AGATACTACACATTAATTGT+GGG + tig0019789:39495-39514 Msa1376230:CDS 25.0%
! ATATTTCAATCTTGATGTGT+AGG - tig0019789:39637-39656 None:intergenic 25.0%
! TATGAATCATGATCATGAAT+AGG + tig0019789:39917-39936 Msa1376230:three_prime_UTR 25.0%
! TTAGTATCATCAAGAAAGAA+AGG - tig0019789:40063-40082 None:intergenic 25.0%
AAATCATGAACACACCTTAT+GGG - tig0019789:37600-37619 None:intergenic 30.0%
AAAATCATGAACACACCTTA+TGG - tig0019789:37601-37620 None:intergenic 30.0%
CACATTCAAATCATTTGCTT+CGG + tig0019789:37707-37726 Msa1376230:CDS 30.0%
!! AGTCATTTTAACCACACTTT+AGG - tig0019789:37804-37823 None:intergenic 30.0%
TGATAAAGGTAGATTACTTC+TGG - tig0019789:37895-37914 None:intergenic 30.0%
! TCAGATCAAAGCTTTGATAA+AGG - tig0019789:37909-37928 None:intergenic 30.0%
! CTTTGTTTGGATATGTAAAG+AGG + tig0019789:38053-38072 Msa1376230:intron 30.0%
! AATTTTACCTTCCAATCTGA+GGG - tig0019789:38187-38206 None:intergenic 30.0%
! TAAAAAGACTGATAATGAGG+TGG - tig0019789:38277-38296 None:intergenic 30.0%
GACAAACTTGTAGAAAATTG+TGG - tig0019789:38513-38532 None:intergenic 30.0%
GAAGAAAGATATCAGAGATT+TGG + tig0019789:38645-38664 Msa1376230:CDS 30.0%
!! ATATTGTTGGTCTTTGGTTT+GGG - tig0019789:38800-38819 None:intergenic 30.0%
!! TATATTGTTGGTCTTTGGTT+TGG - tig0019789:38801-38820 None:intergenic 30.0%
!! TGTCATATATTGTTGGTCTT+TGG - tig0019789:38806-38825 None:intergenic 30.0%
TCTTGCATGTCATATATTGT+TGG - tig0019789:38813-38832 None:intergenic 30.0%
AACAATATATGACATGCAAG+AGG + tig0019789:38812-38831 Msa1376230:CDS 30.0%
GATTGTTTGTCAATATGCAT+TGG - tig0019789:38904-38923 None:intergenic 30.0%
AGATTACTTACCATTTCCTA+TGG - tig0019789:39033-39052 None:intergenic 30.0%
! ATTAGCTTACATAAGGAGTT+AGG - tig0019789:39455-39474 None:intergenic 30.0%
!!! TTTTTTCCATCGTCTTTCAT+TGG - tig0019789:39523-39542 None:intergenic 30.0%
ATGTAACATTTCAGATGTCA+AGG - tig0019789:39587-39606 None:intergenic 30.0%
TCTTGATGTGTAGGAAAAAT+TGG - tig0019789:39628-39647 None:intergenic 30.0%
GTTATATAATCTGTTTGGCA+AGG - tig0019789:39943-39962 None:intergenic 30.0%
GCCAAACAGATTATATAACA+AGG + tig0019789:39944-39963 Msa1376230:three_prime_UTR 30.0%
! GCCTTGTTATATAATCTGTT+TGG - tig0019789:39948-39967 None:intergenic 30.0%
TGATGTTTATGTGACTTTGA+AGG - tig0019789:39995-40014 None:intergenic 30.0%
! TTGGCTTTCACAATTGAAAT+TGG - tig0019789:40087-40106 None:intergenic 30.0%
! ATTTTGTGTCTGTTTGGATT+TGG - tig0019789:40123-40142 None:intergenic 30.0%
ACAAAATGCATGGAAGTTAA+GGG + tig0019789:40136-40155 Msa1376230:three_prime_UTR 30.0%
AGAATTTAGACCTTGTGATG+TGG - tig0019789:37466-37485 None:intergenic 35.0%
AGATGGAAAGAAATAGTGAG+TGG - tig0019789:37498-37517 None:intergenic 35.0%
!!! ATAGAGCTTCAGTTTTGAGA+TGG - tig0019789:37515-37534 None:intergenic 35.0%
TTTCTTCTTGCTCTTTAACC+TGG + tig0019789:37558-37577 Msa1376230:CDS 35.0%
TTCATCCTACTTATCCCATA+AGG + tig0019789:37583-37602 Msa1376230:CDS 35.0%
CGAAGCAAATGATTTGAATG+TGG - tig0019789:37709-37728 None:intergenic 35.0%
TAACAATGTCTCTTGTGCAA+TGG + tig0019789:37750-37769 Msa1376230:CDS 35.0%
CTTCATAGTCGACAAAAGAT+CGG - tig0019789:38144-38163 None:intergenic 35.0%
!! TCTTTTGTCGACTATGAAGA+TGG + tig0019789:38145-38164 Msa1376230:CDS 35.0%
CTTACATTTATCCCTCAGAT+TGG + tig0019789:38173-38192 Msa1376230:CDS 35.0%
! GAATTTTACCTTCCAATCTG+AGG - tig0019789:38188-38207 None:intergenic 35.0%
!! CATCATACTGATTCACAAGA+TGG + tig0019789:38207-38226 Msa1376230:intron 35.0%
ACACGAATTAGTACACACAA+TGG + tig0019789:38425-38444 Msa1376230:intron 35.0%
CAAAACTTACGATAAGACAG+AGG + tig0019789:38472-38491 Msa1376230:intron 35.0%
CTGATATCTTTCTTCTCAGT+TGG - tig0019789:38640-38659 None:intergenic 35.0%
ATCATAATCACCTCTTCCAT+TGG - tig0019789:38673-38692 None:intergenic 35.0%
AACCAGTTTGTGTCTTAATC+AGG + tig0019789:38740-38759 Msa1376230:intron 35.0%
AACCTGATTAAGACACAAAC+TGG - tig0019789:38745-38764 None:intergenic 35.0%
!! TATTGTTGGTCTTTGGTTTG+GGG - tig0019789:38799-38818 None:intergenic 35.0%
TTTCTGAATTCTGAATGCAG+CGG + tig0019789:38925-38944 Msa1376230:intron 35.0%
TATCACACTGAGATTTGAGA+TGG - tig0019789:39057-39076 None:intergenic 35.0%
TCGCGTAATTTCGAAGAAAT+TGG - tig0019789:39283-39302 None:intergenic 35.0%
! GGAGTTTTCAATGCAATCAA+AGG + tig0019789:39356-39375 Msa1376230:intron 35.0%
TATACAATGGCATGAACTCA+TGG + tig0019789:39428-39447 Msa1376230:intron 35.0%
AGTTTCTGTATTGCATACAG+AGG + tig0019789:39718-39737 Msa1376230:three_prime_UTR 35.0%
TGCAATGTATGTGTCAAAGT+GGG - tig0019789:39747-39766 None:intergenic 35.0%
ATGCAATGTATGTGTCAAAG+TGG - tig0019789:39748-39767 None:intergenic 35.0%
CAATCACTGAGAATTACAGA+AGG + tig0019789:39788-39807 Msa1376230:three_prime_UTR 35.0%
CATAAACATCACCACTTAAG+AGG + tig0019789:40004-40023 Msa1376230:three_prime_UTR 35.0%
! AGTTTTCTTCACCTCTTAAG+TGG - tig0019789:40018-40037 None:intergenic 35.0%
CACAAAATGCATGGAAGTTA+AGG + tig0019789:40135-40154 Msa1376230:three_prime_UTR 35.0%
TATACCACTCTTCACCACTA+TGG + tig0019789:37532-37551 Msa1376230:exon 40.0%
GCAAGAAGAAACTACCATAG+TGG - tig0019789:37549-37568 None:intergenic 40.0%
ACACACCTTATGGGATAAGT+AGG - tig0019789:37591-37610 None:intergenic 40.0%
TAGGCTCTTACTTTCTGTAC+TGG - tig0019789:37785-37804 None:intergenic 40.0%
GAAAGTAAGAGCCTAAAGTG+TGG + tig0019789:37790-37809 Msa1376230:intron 40.0%
ACAAAAGATCGGTATCTGTC+TGG - tig0019789:38133-38152 None:intergenic 40.0%
CATTTATCCCTCAGATTGGA+AGG + tig0019789:38177-38196 Msa1376230:CDS 40.0%
TATCAGAGATTTGGGTCCAA+TGG + tig0019789:38654-38673 Msa1376230:CDS 40.0%
CTCAATGTTGTCTCTCTACT+GGG - tig0019789:39238-39257 None:intergenic 40.0%
TCTCAATGTTGTCTCTCTAC+TGG - tig0019789:39239-39258 None:intergenic 40.0%
ACATACAGAAGTTCAACTGC+AGG + tig0019789:39335-39354 Msa1376230:intron 40.0%
AGTACGAGATCAGCTTAAAG+TGG + tig0019789:39542-39561 Msa1376230:CDS 40.0%
AATGTATGTGTCAAAGTGGG+CGG - tig0019789:39744-39763 None:intergenic 40.0%
!! TCTGTTTGGATTTGGTGTCT+TGG - tig0019789:40115-40134 None:intergenic 40.0%
! CCATGCATTTTGTGTCTGTT+TGG - tig0019789:40129-40148 None:intergenic 40.0%
CCAAACAGACACAAAATGCA+TGG + tig0019789:40126-40145 Msa1376230:three_prime_UTR 40.0%
AAACTCCTAGCCACATCACA+AGG + tig0019789:37453-37472 Msa1376230:five_prime_UTR 45.0%
TTAGACCTTGTGATGTGGCT+AGG - tig0019789:37461-37480 None:intergenic 45.0%
ACTACCATAGTGGTGAAGAG+TGG - tig0019789:37539-37558 None:intergenic 45.0%
GGATAAGTAGGATGAAGTCC+AGG - tig0019789:37579-37598 None:intergenic 45.0%
TCAGCTAAGAGTGAGTTTGC+TGG - tig0019789:38015-38034 None:intergenic 45.0%
GCAAACTCACTCTTAGCTGA+AGG + tig0019789:38015-38034 Msa1376230:CDS 45.0%
! TTCCCCAGGAATTTGACTTC+AGG + tig0019789:38551-38570 Msa1376230:intron 45.0%
! TCCCCAGGAATTTGACTTCA+GGG + tig0019789:38552-38571 Msa1376230:intron 45.0%
TGCCCTGAAGTCAAATTCCT+GGG - tig0019789:38557-38576 None:intergenic 45.0%
AGATTTGGGTCCAATGGAAG+AGG + tig0019789:38660-38679 Msa1376230:CDS 45.0%
! TATGGCAAGTGTCGTAAAGG+AGG - tig0019789:39015-39034 None:intergenic 45.0%
TCCTTTACGACACTTGCCAT+AGG + tig0019789:39014-39033 Msa1376230:CDS 45.0%
! TCCTATGGCAAGTGTCGTAA+AGG - tig0019789:39018-39037 None:intergenic 45.0%
ACGACACTTGCCATAGGAAA+TGG + tig0019789:39020-39039 Msa1376230:CDS 45.0%
AAGTGGTAGCAGACTCCTTT+AGG + tig0019789:39559-39578 Msa1376230:CDS 45.0%
TCAGATGTCAAGGAGCCTAA+AGG - tig0019789:39577-39596 None:intergenic 45.0%
CTGAGAATTACAGAAGGACG+AGG + tig0019789:39794-39813 Msa1376230:three_prime_UTR 45.0%
!! ATTTGGTGTCTTGGTCGTCT+TGG - tig0019789:40106-40125 None:intergenic 45.0%
!!! TTTCTTTTTTAATTATTATT+AGG + tig0019789:37931-37950 Msa1376230:intron 5.0%
!! AATTATAATAAAATATACAA+TGG + tig0019789:39415-39434 Msa1376230:intron 5.0%
CAGAGAAGACCACTGCTGTT+GGG + tig0019789:37961-37980 Msa1376230:CDS 50.0%
AGACCACTGCTGTTGGGTAT+AGG + tig0019789:37967-37986 Msa1376230:CDS 50.0%
! GTCTGAGTGATCTTTTCCCC+AGG + tig0019789:38537-38556 Msa1376230:intron 50.0%
GCCCTGAAGTCAAATTCCTG+GGG - tig0019789:38556-38575 None:intergenic 50.0%
GTGCCCTGAAGTCAAATTCC+TGG - tig0019789:38558-38577 None:intergenic 50.0%
TGAATGCAGCGGACGATAGA+TGG + tig0019789:38936-38955 Msa1376230:intron 50.0%
TGGGAGCCAATGAAAGACGA+TGG + tig0019789:39514-39533 Msa1376230:CDS 50.0%
CCAACAGCAGTGGTCTTCTC+TGG - tig0019789:37963-37982 None:intergenic 55.0%
CCAGAGAAGACCACTGCTGT+TGG + tig0019789:37960-37979 Msa1376230:CDS 55.0%
CCTCCTATACCCAACAGCAG+TGG - tig0019789:37973-37992 None:intergenic 55.0%
CCACTGCTGTTGGGTATAGG+AGG + tig0019789:37970-37989 Msa1376230:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0019789 gene 37451 40191 37451 ID=Msa1376230;Name=Msa1376230
tig0019789 mRNA 37451 40191 37451 ID=Msa1376230-mRNA-1;Parent=Msa1376230;Name=Msa1376230-mRNA-1;_AED=0.10;_eAED=0.10;_QI=100|1|1|1|1|1|8|595|234
tig0019789 exon 37451 37604 37451 ID=Msa1376230-mRNA-1:exon:4989;Parent=Msa1376230-mRNA-1
tig0019789 exon 37697 37793 37697 ID=Msa1376230-mRNA-1:exon:4990;Parent=Msa1376230-mRNA-1
tig0019789 exon 37953 38036 37953 ID=Msa1376230-mRNA-1:exon:4991;Parent=Msa1376230-mRNA-1
tig0019789 exon 38125 38198 38125 ID=Msa1376230-mRNA-1:exon:4992;Parent=Msa1376230-mRNA-1
tig0019789 exon 38559 38681 38559 ID=Msa1376230-mRNA-1:exon:4993;Parent=Msa1376230-mRNA-1
tig0019789 exon 38762 38833 38762 ID=Msa1376230-mRNA-1:exon:4994;Parent=Msa1376230-mRNA-1
tig0019789 exon 38945 39041 38945 ID=Msa1376230-mRNA-1:exon:4995;Parent=Msa1376230-mRNA-1
tig0019789 exon 39493 40191 39493 ID=Msa1376230-mRNA-1:exon:4996;Parent=Msa1376230-mRNA-1
tig0019789 five_prime_UTR 37451 37550 37451 ID=Msa1376230-mRNA-1:five_prime_utr;Parent=Msa1376230-mRNA-1
tig0019789 CDS 37551 37604 37551 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 37697 37793 37697 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 37953 38036 37953 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 38125 38198 38125 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 38559 38681 38559 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 38762 38833 38762 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 38945 39041 38945 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 CDS 39493 39596 39493 ID=Msa1376230-mRNA-1:cds;Parent=Msa1376230-mRNA-1
tig0019789 three_prime_UTR 39597 40191 39597 ID=Msa1376230-mRNA-1:three_prime_utr;Parent=Msa1376230-mRNA-1
Gene Sequence

>Msa1376230

ATGGTAGTTTCTTCTTGCTCTTTAACCTGGACTTCATCCTACTTATCCCATAAGCTAAACTTGCCACATTCAAATCATTTGCTTCGGAATACTACAACTTCATCTTCTAACAATGTCTCTTGTGCAATGGAAACAACTTCCAGTACAGAAAGACACTGCCAGAGAAGACCACTGCTGTTGGGTATAGGAGGATTGACAGCAAATTTGTTACCAGCAAACTCACTCTTAGCTGAAGAAATACCAGACAGATACCGATCTTTTGTCGACTATGAAGATGGATATTCTTACATTTATCCCTCAGATTGGAAGGAATTTGACTTCAGGGCACACGATTCTGCATTCAAAGACAGATATTTACAGTTACAAAATGTAAGGGTGAGATTCATACCAACTGAGAAGAAAGATATCAGAGATTTGGGTCCAATGGAAGAGGTTATTACTGATTTGGTGAAACATAGATATGCTGCCCCAAACCAAAGACCAACAATATATGACATGCAAGAGCGGACGATAGATGGAAAACATTATTATACAATGGAATATGTACTTACATCACGAAATTACGCTAGTGCCTCCTTTACGACACTTGCCATAGGAAATGGAAGATACTACACATTAATTGTGGGAGCCAATGAAAGACGATGGAAAAAAGTACGAGATCAGCTTAAAGTGGTAGCAGACTCCTTTAGGCTCCTTGACATCTGA

Protein sequence

>Msa1376230

MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNVSCAMETTSSTERHCQRRPLLLGIGGLTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRFIPTEKKDIRDLGPMEEVITDLVKHRYAAPNQRPTIYDMQERTIDGKHYYTMEYVLTSRNYASASFTTLAIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI*