AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371690 MtrunA17_Chr1g0212681 99.573 234 1 0 1 234 1 234 9.68e-178 487
Msa1371690 MtrunA17_Chr7g0222751 38.220 191 117 1 45 234 50 240 6.87e-46 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371690 AT2G39470.1 60.084 238 91 2 1 234 1 238 3.75e-97 283
Msa1371690 AT2G39470.2 60.593 236 85 3 1 234 1 230 2.76e-95 278
Msa1371690 AT2G39470.3 58.824 170 62 3 1 168 1 164 1.43e-60 188
Msa1371690 AT3G55330.1 37.569 181 111 2 53 231 48 228 2.48e-42 144

Find 83 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTTTCACAATTGAAAT+TGG 0.198890 tig0019249:-46328 None:intergenic
ATATTGTTGGTCTTTGGTTT+GGG 0.234233 tig0019249:-45041 None:intergenic
TATATTGTTGGTCTTTGGTT+TGG 0.266254 tig0019249:-45042 None:intergenic
ATATATCAGATATCGTAAAT+AGG 0.271891 tig0019249:-46141 None:intergenic
TAATCAGGTTATTACTGATT+TGG 0.282582 tig0019249:+44999 Msa1371690:intron
CACAAAATGCATGGAAGTTA+AGG 0.289530 tig0019249:+46379 Msa1371690:three_prime_UTR
GAAGAAAGATATCAGAGATT+TGG 0.298345 tig0019249:+44889 Msa1371690:CDS
TGTCATATATTGTTGGTCTT+TGG 0.307687 tig0019249:-45047 None:intergenic
AAGTGGTAGCAGACTCCTTT+AGG 0.329582 tig0019249:+45803 Msa1371690:CDS
TTCCCCAGGAATTTGACTTC+AGG 0.336858 tig0019249:+44795 Msa1371690:intron
AAGAAAGATATCAGAGATTT+GGG 0.360869 tig0019249:+44890 Msa1371690:CDS
CACATTCAAATCATTTGCTT+CGG 0.366493 tig0019249:+43951 Msa1371690:CDS
TGAATGCAGCGGACGATAGA+TGG 0.372410 tig0019249:+45180 Msa1371690:intron
TCTTGCATGTCATATATTGT+TGG 0.373534 tig0019249:-45054 None:intergenic
CTGATATCTTTCTTCTCAGT+TGG 0.377354 tig0019249:-44881 None:intergenic
GCCTTGTTATATAATCTGTT+TGG 0.394580 tig0019249:-46189 None:intergenic
CTTTAAAATATAGATCTGTT+TGG 0.397300 tig0019249:-46104 None:intergenic
ATTTACAGTTACAAAATGTA+AGG 0.400765 tig0019249:+44846 Msa1371690:CDS
TATATCAGATATCGTAAATA+GGG 0.402152 tig0019249:-46140 None:intergenic
TTTCTTCTTGCTCTTTAACC+TGG 0.402638 tig0019249:+43802 Msa1371690:CDS
TCCCCAGGAATTTGACTTCA+GGG 0.410418 tig0019249:+44796 Msa1371690:intron
ACGACACTTGCCATAGGAAA+TGG 0.413180 tig0019249:+45264 Msa1371690:CDS
AGACCACTGCTGTTGGGTAT+AGG 0.414717 tig0019249:+44211 Msa1371690:CDS
AAATCATGAACACACCTTAT+GGG 0.424094 tig0019249:-43841 None:intergenic
TATGAATCATGATCATGAAT+AGG 0.431014 tig0019249:+46161 Msa1371690:three_prime_UTR
CATAAACATCACCACTTAAG+AGG 0.438219 tig0019249:+46248 Msa1371690:three_prime_UTR
CTTACATTTATCCCTCAGAT+TGG 0.440474 tig0019249:+44417 Msa1371690:CDS
AGATTACTTACCATTTCCTA+TGG 0.448627 tig0019249:-45274 None:intergenic
CCAACAGCAGTGGTCTTCTC+TGG 0.449995 tig0019249:-44204 None:intergenic
ATTTGGTGTCTTGGTCGTCT+TGG 0.459995 tig0019249:-46347 None:intergenic
TATACCACTCTTCACCACTA+TGG 0.462456 tig0019249:+43776 Msa1371690:exon
GTGATGTGGCTAGGAGTTTG+TGG 0.466897 tig0019249:-43693 None:intergenic
CATTTATCCCTCAGATTGGA+AGG 0.470985 tig0019249:+44421 Msa1371690:CDS
TCTGTTTGGATTTGGTGTCT+TGG 0.479619 tig0019249:-46356 None:intergenic
CAGAGAAGACCACTGCTGTT+GGG 0.485011 tig0019249:+44205 Msa1371690:CDS
TCAGCTAAGAGTGAGTTTGC+TGG 0.485092 tig0019249:-44256 None:intergenic
ATCATAATCACCTCTTCCAT+TGG 0.486106 tig0019249:-44914 None:intergenic
TTAGTATCATCAAGAAAGAA+AGG 0.498552 tig0019249:-46304 None:intergenic
TAGGCTCTTACTTTCTGTAC+TGG 0.501571 tig0019249:-44026 None:intergenic
ACAAAAGATCGGTATCTGTC+TGG 0.502898 tig0019249:-44374 None:intergenic
ATATTTCAATCTTGATGTGT+AGG 0.505775 tig0019249:-45878 None:intergenic
ACAAAATGCATGGAAGTTAA+GGG 0.508559 tig0019249:+46380 Msa1371690:three_prime_UTR
TTCATCCTACTTATCCCATA+AGG 0.512519 tig0019249:+43827 Msa1371690:CDS
GTTATATAATCTGTTTGGCA+AGG 0.516645 tig0019249:-46184 None:intergenic
TTAGACCTTGTGATGTGGCT+AGG 0.516779 tig0019249:-43702 None:intergenic
TCCTATGGCAAGTGTCGTAA+AGG 0.521687 tig0019249:-45259 None:intergenic
AAGATACTACACATTAATTG+TGG 0.525487 tig0019249:+45738 Msa1371690:CDS
CCAGAGAAGACCACTGCTGT+TGG 0.535568 tig0019249:+44204 Msa1371690:CDS
TATCAGAGATTTGGGTCCAA+TGG 0.538055 tig0019249:+44898 Msa1371690:CDS
TAACAATGTCTCTTGTGCAA+TGG 0.546990 tig0019249:+43994 Msa1371690:CDS
ACACACCTTATGGGATAAGT+AGG 0.562591 tig0019249:-43832 None:intergenic
AGATTTGGGTCCAATGGAAG+AGG 0.563882 tig0019249:+44904 Msa1371690:CDS
AGTACGAGATCAGCTTAAAG+TGG 0.565699 tig0019249:+45786 Msa1371690:CDS
TCAGATGTCAAGGAGCCTAA+AGG 0.574123 tig0019249:-45818 None:intergenic
CCAAACAGACACAAAATGCA+TGG 0.575218 tig0019249:+46370 Msa1371690:three_prime_UTR
AGATACTACACATTAATTGT+GGG 0.575783 tig0019249:+45739 Msa1371690:CDS
CGAAGCAAATGATTTGAATG+TGG 0.577902 tig0019249:-43950 None:intergenic
ATGTAACATTTCAGATGTCA+AGG 0.578967 tig0019249:-45828 None:intergenic
TATTGTTGGTCTTTGGTTTG+GGG 0.579380 tig0019249:-45040 None:intergenic
TGGAAAACATTATTATACAA+TGG 0.592201 tig0019249:+45200 Msa1371690:CDS
TTTACAGTTACAAAATGTAA+GGG 0.596231 tig0019249:+44847 Msa1371690:CDS
TGATGTTTATGTGACTTTGA+AGG 0.599429 tig0019249:-46236 None:intergenic
CTTCATAGTCGACAAAAGAT+CGG 0.601736 tig0019249:-44385 None:intergenic
GGATAAGTAGGATGAAGTCC+AGG 0.607100 tig0019249:-43820 None:intergenic
GCAAACTCACTCTTAGCTGA+AGG 0.608621 tig0019249:+44259 Msa1371690:CDS
GCAAGAAGAAACTACCATAG+TGG 0.608868 tig0019249:-43790 None:intergenic
AACAATATATGACATGCAAG+AGG 0.615986 tig0019249:+45056 Msa1371690:CDS
AGATGGAAAGAAATAGTGAG+TGG 0.619866 tig0019249:-43739 None:intergenic
TCCTTTACGACACTTGCCAT+AGG 0.621482 tig0019249:+45258 Msa1371690:CDS
TATGGCAAGTGTCGTAAAGG+AGG 0.624367 tig0019249:-45256 None:intergenic
AAACTCCTAGCCACATCACA+AGG 0.625733 tig0019249:+43697 Msa1371690:five_prime_UTR
AGAATTTAGACCTTGTGATG+TGG 0.627994 tig0019249:-43707 None:intergenic
CTGAGAATTACAGAAGGACG+AGG 0.638190 tig0019249:+46038 Msa1371690:three_prime_UTR
AGTTTCTGTATTGCATACAG+AGG 0.646416 tig0019249:+45962 Msa1371690:three_prime_UTR
TGGGAGCCAATGAAAGACGA+TGG 0.646942 tig0019249:+45758 Msa1371690:CDS
ATGCAATGTATGTGTCAAAG+TGG 0.650682 tig0019249:-45989 None:intergenic
TGCAATGTATGTGTCAAAGT+GGG 0.656188 tig0019249:-45988 None:intergenic
ACTACCATAGTGGTGAAGAG+TGG 0.666095 tig0019249:-43780 None:intergenic
GCTCCTATACCCAACAGCAG+TGG 0.673108 tig0019249:-44214 None:intergenic
GCCAAACAGATTATATAACA+AGG 0.675376 tig0019249:+46188 Msa1371690:three_prime_UTR
ATGAAACCAATGATAGCATG+TGG 0.678879 tig0019249:-46426 None:intergenic
CAATCACTGAGAATTACAGA+AGG 0.696152 tig0019249:+46032 Msa1371690:three_prime_UTR
AATGTATGTGTCAAAGTGGG+CGG 0.746612 tig0019249:-45985 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATAACATCTTTGTT+TGG + tig0019249:44284-44303 Msa1371690:intron 20.0%
!! GATAGTTAATATGAAAACAA+GGG - tig0019249:44481-44500 None:intergenic 20.0%
!! TGATAGTTAATATGAAAACA+AGG - tig0019249:44482-44501 None:intergenic 20.0%
!!! TTTTAAAAAGACTGATAATG+AGG - tig0019249:44524-44543 None:intergenic 20.0%
!! TTTGCGTAACTATATTAATA+AGG + tig0019249:44617-44636 Msa1371690:intron 20.0%
!! TTGCGTAACTATATTAATAA+GGG + tig0019249:44618-44637 Msa1371690:intron 20.0%
!! ATTTACAGTTACAAAATGTA+AGG + tig0019249:44846-44865 Msa1371690:CDS 20.0%
!! TTTACAGTTACAAAATGTAA+GGG + tig0019249:44847-44866 Msa1371690:CDS 20.0%
!!! TTCTTTTGGAAAAAACAAAT+TGG - tig0019249:45107-45126 None:intergenic 20.0%
!!! TTTTTCCAAAAGAATATCTT+AGG + tig0019249:45113-45132 Msa1371690:intron 20.0%
!! TGGAAAACATTATTATACAA+TGG + tig0019249:45200-45219 Msa1371690:CDS 20.0%
!! TCAGTATAATATAATAATGC+TGG + tig0019249:45624-45643 Msa1371690:intron 20.0%
!!! CTTTAAAATATAGATCTGTT+TGG - tig0019249:46107-46126 None:intergenic 20.0%
!! TATATCAGATATCGTAAATA+GGG - tig0019249:46143-46162 None:intergenic 20.0%
!! ATATATCAGATATCGTAAAT+AGG - tig0019249:46144-46163 None:intergenic 20.0%
!! TCTGGTATTTCTACAAAATA+AGG - tig0019249:44359-44378 None:intergenic 25.0%
! AAGAAAGATATCAGAGATTT+GGG + tig0019249:44890-44909 Msa1371690:CDS 25.0%
! TTAGATTCTGTCTTAATGTA+TGG + tig0019249:44937-44956 Msa1371690:intron 25.0%
!! TAATCAGGTTATTACTGATT+TGG + tig0019249:44999-45018 Msa1371690:intron 25.0%
!! CAAAACCTAAGATATTCTTT+TGG - tig0019249:45121-45140 None:intergenic 25.0%
!!! AAGAATATCTTAGGTTTTGA+TGG + tig0019249:45122-45141 Msa1371690:intron 25.0%
!! TTCTTTGAGAGAATATTTGT+TGG - tig0019249:45325-45344 None:intergenic 25.0%
! TAGTTGTTGTATTATCTAAC+AGG - tig0019249:45375-45394 None:intergenic 25.0%
!! TTCTTGTTGTATTATCTAAC+AGG - tig0019249:45399-45418 None:intergenic 25.0%
! AAAATGATTATAAGTGACAC+AGG + tig0019249:45431-45450 Msa1371690:intron 25.0%
!! GAATGTTATTAGCTTACATA+AGG - tig0019249:45706-45725 None:intergenic 25.0%
! TAATAACATTCACTTTGTAC+AGG + tig0019249:45715-45734 Msa1371690:intron 25.0%
! AAGATACTACACATTAATTG+TGG + tig0019249:45738-45757 Msa1371690:CDS 25.0%
! AGATACTACACATTAATTGT+GGG + tig0019249:45739-45758 Msa1371690:CDS 25.0%
! ATATTTCAATCTTGATGTGT+AGG - tig0019249:45881-45900 None:intergenic 25.0%
! TATGAATCATGATCATGAAT+AGG + tig0019249:46161-46180 Msa1371690:three_prime_UTR 25.0%
! TTAGTATCATCAAGAAAGAA+AGG - tig0019249:46307-46326 None:intergenic 25.0%
AAATCATGAACACACCTTAT+GGG - tig0019249:43844-43863 None:intergenic 30.0%
AAAATCATGAACACACCTTA+TGG - tig0019249:43845-43864 None:intergenic 30.0%
CACATTCAAATCATTTGCTT+CGG + tig0019249:43951-43970 Msa1371690:CDS 30.0%
!! AGTCATTTTAACCACACTTT+AGG - tig0019249:44048-44067 None:intergenic 30.0%
TGATAAAGGTAGATTACTTC+TGG - tig0019249:44139-44158 None:intergenic 30.0%
! TCAGATCAAAGCTTTGATAA+AGG - tig0019249:44153-44172 None:intergenic 30.0%
! CTTTGTTTGGATATGTAAAG+AGG + tig0019249:44297-44316 Msa1371690:intron 30.0%
! AATTTTACCTTCCAATCTGA+GGG - tig0019249:44431-44450 None:intergenic 30.0%
! TAAAAAGACTGATAATGAGG+TGG - tig0019249:44521-44540 None:intergenic 30.0%
GACAAACTTGTAGAAAATTG+TGG - tig0019249:44757-44776 None:intergenic 30.0%
GAAGAAAGATATCAGAGATT+TGG + tig0019249:44889-44908 Msa1371690:CDS 30.0%
!! ATATTGTTGGTCTTTGGTTT+GGG - tig0019249:45044-45063 None:intergenic 30.0%
!! TATATTGTTGGTCTTTGGTT+TGG - tig0019249:45045-45064 None:intergenic 30.0%
!! TGTCATATATTGTTGGTCTT+TGG - tig0019249:45050-45069 None:intergenic 30.0%
TCTTGCATGTCATATATTGT+TGG - tig0019249:45057-45076 None:intergenic 30.0%
AACAATATATGACATGCAAG+AGG + tig0019249:45056-45075 Msa1371690:CDS 30.0%
GATTGTTTGTCAATATGCAT+TGG - tig0019249:45148-45167 None:intergenic 30.0%
AGATTACTTACCATTTCCTA+TGG - tig0019249:45277-45296 None:intergenic 30.0%
! ATTAGCTTACATAAGGAGTT+AGG - tig0019249:45699-45718 None:intergenic 30.0%
!!! TTTTTTCCATCGTCTTTCAT+TGG - tig0019249:45767-45786 None:intergenic 30.0%
ATGTAACATTTCAGATGTCA+AGG - tig0019249:45831-45850 None:intergenic 30.0%
TCTTGATGTGTAGGAAAAAT+TGG - tig0019249:45872-45891 None:intergenic 30.0%
GTTATATAATCTGTTTGGCA+AGG - tig0019249:46187-46206 None:intergenic 30.0%
GCCAAACAGATTATATAACA+AGG + tig0019249:46188-46207 Msa1371690:three_prime_UTR 30.0%
! GCCTTGTTATATAATCTGTT+TGG - tig0019249:46192-46211 None:intergenic 30.0%
TGATGTTTATGTGACTTTGA+AGG - tig0019249:46239-46258 None:intergenic 30.0%
! TTGGCTTTCACAATTGAAAT+TGG - tig0019249:46331-46350 None:intergenic 30.0%
! ATTTTGTGTCTGTTTGGATT+TGG - tig0019249:46367-46386 None:intergenic 30.0%
ACAAAATGCATGGAAGTTAA+GGG + tig0019249:46380-46399 Msa1371690:three_prime_UTR 30.0%
AGAATTTAGACCTTGTGATG+TGG - tig0019249:43710-43729 None:intergenic 35.0%
AGATGGAAAGAAATAGTGAG+TGG - tig0019249:43742-43761 None:intergenic 35.0%
!!! ATAGAGCTTCAGTTTTGAGA+TGG - tig0019249:43759-43778 None:intergenic 35.0%
TTTCTTCTTGCTCTTTAACC+TGG + tig0019249:43802-43821 Msa1371690:CDS 35.0%
TTCATCCTACTTATCCCATA+AGG + tig0019249:43827-43846 Msa1371690:CDS 35.0%
CGAAGCAAATGATTTGAATG+TGG - tig0019249:43953-43972 None:intergenic 35.0%
TAACAATGTCTCTTGTGCAA+TGG + tig0019249:43994-44013 Msa1371690:CDS 35.0%
CTTCATAGTCGACAAAAGAT+CGG - tig0019249:44388-44407 None:intergenic 35.0%
!! TCTTTTGTCGACTATGAAGA+TGG + tig0019249:44389-44408 Msa1371690:CDS 35.0%
CTTACATTTATCCCTCAGAT+TGG + tig0019249:44417-44436 Msa1371690:CDS 35.0%
! GAATTTTACCTTCCAATCTG+AGG - tig0019249:44432-44451 None:intergenic 35.0%
!! CATCATACTGATTCACAAGA+TGG + tig0019249:44451-44470 Msa1371690:intron 35.0%
ACACGAATTAGTACACACAA+TGG + tig0019249:44669-44688 Msa1371690:intron 35.0%
CAAAACTTACGATAAGACAG+AGG + tig0019249:44716-44735 Msa1371690:intron 35.0%
CTGATATCTTTCTTCTCAGT+TGG - tig0019249:44884-44903 None:intergenic 35.0%
ATCATAATCACCTCTTCCAT+TGG - tig0019249:44917-44936 None:intergenic 35.0%
AACCAGTTTGTGTCTTAATC+AGG + tig0019249:44984-45003 Msa1371690:intron 35.0%
AACCTGATTAAGACACAAAC+TGG - tig0019249:44989-45008 None:intergenic 35.0%
!! TATTGTTGGTCTTTGGTTTG+GGG - tig0019249:45043-45062 None:intergenic 35.0%
TTTCTGAATTCTGAATGCAG+CGG + tig0019249:45169-45188 Msa1371690:intron 35.0%
TATCACACTGAGATTTGAGA+TGG - tig0019249:45301-45320 None:intergenic 35.0%
TCGCGTAATTTCGAAGAAAT+TGG - tig0019249:45527-45546 None:intergenic 35.0%
! GGAGTTTTCAATGCAATCAA+AGG + tig0019249:45600-45619 Msa1371690:intron 35.0%
TATACAATGGCATGAACTCA+TGG + tig0019249:45672-45691 Msa1371690:intron 35.0%
AGTTTCTGTATTGCATACAG+AGG + tig0019249:45962-45981 Msa1371690:three_prime_UTR 35.0%
TGCAATGTATGTGTCAAAGT+GGG - tig0019249:45991-46010 None:intergenic 35.0%
ATGCAATGTATGTGTCAAAG+TGG - tig0019249:45992-46011 None:intergenic 35.0%
CAATCACTGAGAATTACAGA+AGG + tig0019249:46032-46051 Msa1371690:three_prime_UTR 35.0%
CATAAACATCACCACTTAAG+AGG + tig0019249:46248-46267 Msa1371690:three_prime_UTR 35.0%
! AGTTTTCTTCACCTCTTAAG+TGG - tig0019249:46262-46281 None:intergenic 35.0%
CACAAAATGCATGGAAGTTA+AGG + tig0019249:46379-46398 Msa1371690:three_prime_UTR 35.0%
TATACCACTCTTCACCACTA+TGG + tig0019249:43776-43795 Msa1371690:exon 40.0%
GCAAGAAGAAACTACCATAG+TGG - tig0019249:43793-43812 None:intergenic 40.0%
ACACACCTTATGGGATAAGT+AGG - tig0019249:43835-43854 None:intergenic 40.0%
TAGGCTCTTACTTTCTGTAC+TGG - tig0019249:44029-44048 None:intergenic 40.0%
GAAAGTAAGAGCCTAAAGTG+TGG + tig0019249:44034-44053 Msa1371690:intron 40.0%
ACAAAAGATCGGTATCTGTC+TGG - tig0019249:44377-44396 None:intergenic 40.0%
CATTTATCCCTCAGATTGGA+AGG + tig0019249:44421-44440 Msa1371690:CDS 40.0%
TATCAGAGATTTGGGTCCAA+TGG + tig0019249:44898-44917 Msa1371690:CDS 40.0%
CTCAATGTTGTCTCTCTACT+GGG - tig0019249:45482-45501 None:intergenic 40.0%
TCTCAATGTTGTCTCTCTAC+TGG - tig0019249:45483-45502 None:intergenic 40.0%
ACATACAGAAGTTCAACTGC+AGG + tig0019249:45579-45598 Msa1371690:intron 40.0%
AGTACGAGATCAGCTTAAAG+TGG + tig0019249:45786-45805 Msa1371690:CDS 40.0%
AATGTATGTGTCAAAGTGGG+CGG - tig0019249:45988-46007 None:intergenic 40.0%
!! TCTGTTTGGATTTGGTGTCT+TGG - tig0019249:46359-46378 None:intergenic 40.0%
! CCATGCATTTTGTGTCTGTT+TGG - tig0019249:46373-46392 None:intergenic 40.0%
CCAAACAGACACAAAATGCA+TGG + tig0019249:46370-46389 Msa1371690:three_prime_UTR 40.0%
AAACTCCTAGCCACATCACA+AGG + tig0019249:43697-43716 Msa1371690:five_prime_UTR 45.0%
TTAGACCTTGTGATGTGGCT+AGG - tig0019249:43705-43724 None:intergenic 45.0%
ACTACCATAGTGGTGAAGAG+TGG - tig0019249:43783-43802 None:intergenic 45.0%
GGATAAGTAGGATGAAGTCC+AGG - tig0019249:43823-43842 None:intergenic 45.0%
TCAGCTAAGAGTGAGTTTGC+TGG - tig0019249:44259-44278 None:intergenic 45.0%
GCAAACTCACTCTTAGCTGA+AGG + tig0019249:44259-44278 Msa1371690:CDS 45.0%
! TTCCCCAGGAATTTGACTTC+AGG + tig0019249:44795-44814 Msa1371690:intron 45.0%
! TCCCCAGGAATTTGACTTCA+GGG + tig0019249:44796-44815 Msa1371690:intron 45.0%
TGCCCTGAAGTCAAATTCCT+GGG - tig0019249:44801-44820 None:intergenic 45.0%
AGATTTGGGTCCAATGGAAG+AGG + tig0019249:44904-44923 Msa1371690:CDS 45.0%
! TATGGCAAGTGTCGTAAAGG+AGG - tig0019249:45259-45278 None:intergenic 45.0%
TCCTTTACGACACTTGCCAT+AGG + tig0019249:45258-45277 Msa1371690:CDS 45.0%
! TCCTATGGCAAGTGTCGTAA+AGG - tig0019249:45262-45281 None:intergenic 45.0%
ACGACACTTGCCATAGGAAA+TGG + tig0019249:45264-45283 Msa1371690:CDS 45.0%
AAGTGGTAGCAGACTCCTTT+AGG + tig0019249:45803-45822 Msa1371690:CDS 45.0%
TCAGATGTCAAGGAGCCTAA+AGG - tig0019249:45821-45840 None:intergenic 45.0%
CTGAGAATTACAGAAGGACG+AGG + tig0019249:46038-46057 Msa1371690:three_prime_UTR 45.0%
!! ATTTGGTGTCTTGGTCGTCT+TGG - tig0019249:46350-46369 None:intergenic 45.0%
!!! TTTCTTTTTTAATTATTATT+AGG + tig0019249:44175-44194 Msa1371690:intron 5.0%
!! AATTATAATAAAATATACAA+TGG + tig0019249:45659-45678 Msa1371690:intron 5.0%
CAGAGAAGACCACTGCTGTT+GGG + tig0019249:44205-44224 Msa1371690:CDS 50.0%
AGACCACTGCTGTTGGGTAT+AGG + tig0019249:44211-44230 Msa1371690:CDS 50.0%
! GTCTGAGTGATCTTTTCCCC+AGG + tig0019249:44781-44800 Msa1371690:intron 50.0%
GCCCTGAAGTCAAATTCCTG+GGG - tig0019249:44800-44819 None:intergenic 50.0%
GTGCCCTGAAGTCAAATTCC+TGG - tig0019249:44802-44821 None:intergenic 50.0%
TGAATGCAGCGGACGATAGA+TGG + tig0019249:45180-45199 Msa1371690:intron 50.0%
TGGGAGCCAATGAAAGACGA+TGG + tig0019249:45758-45777 Msa1371690:CDS 50.0%
CCAACAGCAGTGGTCTTCTC+TGG - tig0019249:44207-44226 None:intergenic 55.0%
CCAGAGAAGACCACTGCTGT+TGG + tig0019249:44204-44223 Msa1371690:CDS 55.0%
GCTCCTATACCCAACAGCAG+TGG - tig0019249:44217-44236 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0019249 gene 43695 46435 43695 ID=Msa1371690;Name=Msa1371690
tig0019249 mRNA 43695 46435 43695 ID=Msa1371690-mRNA-1;Parent=Msa1371690;Name=Msa1371690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=100|1|1|1|1|1|8|595|234
tig0019249 exon 43695 43848 43695 ID=Msa1371690-mRNA-1:exon:2369;Parent=Msa1371690-mRNA-1
tig0019249 exon 43941 44037 43941 ID=Msa1371690-mRNA-1:exon:2370;Parent=Msa1371690-mRNA-1
tig0019249 exon 44197 44280 44197 ID=Msa1371690-mRNA-1:exon:2371;Parent=Msa1371690-mRNA-1
tig0019249 exon 44369 44442 44369 ID=Msa1371690-mRNA-1:exon:2372;Parent=Msa1371690-mRNA-1
tig0019249 exon 44803 44925 44803 ID=Msa1371690-mRNA-1:exon:2373;Parent=Msa1371690-mRNA-1
tig0019249 exon 45006 45077 45006 ID=Msa1371690-mRNA-1:exon:2374;Parent=Msa1371690-mRNA-1
tig0019249 exon 45189 45285 45189 ID=Msa1371690-mRNA-1:exon:2375;Parent=Msa1371690-mRNA-1
tig0019249 exon 45737 46435 45737 ID=Msa1371690-mRNA-1:exon:2376;Parent=Msa1371690-mRNA-1
tig0019249 five_prime_UTR 43695 43794 43695 ID=Msa1371690-mRNA-1:five_prime_utr;Parent=Msa1371690-mRNA-1
tig0019249 CDS 43795 43848 43795 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 43941 44037 43941 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 44197 44280 44197 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 44369 44442 44369 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 44803 44925 44803 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 45006 45077 45006 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 45189 45285 45189 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 CDS 45737 45840 45737 ID=Msa1371690-mRNA-1:cds;Parent=Msa1371690-mRNA-1
tig0019249 three_prime_UTR 45841 46435 45841 ID=Msa1371690-mRNA-1:three_prime_utr;Parent=Msa1371690-mRNA-1
Gene Sequence

>Msa1371690

ATGGTAGTTTCTTCTTGCTCTTTAACCTGGACTTCATCCTACTTATCCCATAAGCTAAACTTGCCACATTCAAATCATTTGCTTCGGAATACTACAACTTCATCTTCTAACAATGTCTCTTGTGCAATGGAAACAACTTCCAGTACAGAAAGACACTGCCAGAGAAGACCACTGCTGTTGGGTATAGGAGCATTGACAGCAAATTTGTTACCAGCAAACTCACTCTTAGCTGAAGAAATACCAGACAGATACCGATCTTTTGTCGACTATGAAGATGGATATTCTTACATTTATCCCTCAGATTGGAAGGAATTTGACTTCAGGGCACACGATTCTGCATTCAAAGACAGATATTTACAGTTACAAAATGTAAGGGTGAGATTCATACCAACTGAGAAGAAAGATATCAGAGATTTGGGTCCAATGGAAGAGGTTATTACTGATTTGGTGAAACATAGATATGCTGCCCCAAACCAAAGACCAACAATATATGACATGCAAGAGCGGACGATAGATGGAAAACATTATTATACAATGGAATATGTACTTACATCACGAAATTACGCTAGTGCCTCCTTTACGACACTTGCCATAGGAAATGGAAGATACTACACATTAATTGTGGGAGCCAATGAAAGACGATGGAAAAAAGTACGAGATCAGCTTAAAGTGGTAGCAGACTCCTTTAGGCTCCTTGACATCTGA

Protein sequence

>Msa1371690

MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNVSCAMETTSSTERHCQRRPLLLGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRFIPTEKKDIRDLGPMEEVITDLVKHRYAAPNQRPTIYDMQERTIDGKHYYTMEYVLTSRNYASASFTTLAIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI*