AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045530 MtrunA17_Chr1g0212681 99.573 234 1 0 1 234 1 234 9.68e-178 487
Msa0045530 MtrunA17_Chr7g0222751 38.220 191 117 1 45 234 50 240 6.87e-46 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045530 AT2G39470.1 60.084 238 91 2 1 234 1 238 3.75e-97 283
Msa0045530 AT2G39470.2 60.593 236 85 3 1 234 1 230 2.76e-95 278
Msa0045530 AT2G39470.3 58.824 170 62 3 1 168 1 164 1.43e-60 188
Msa0045530 AT3G55330.1 37.569 181 111 2 53 231 48 228 2.48e-42 144

Find 83 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTTTCACAATTGAAAT+TGG 0.198890 1_1:-77474071 None:intergenic
ATATTGTTGGTCTTTGGTTT+GGG 0.234233 1_1:-77472784 None:intergenic
TATATTGTTGGTCTTTGGTT+TGG 0.266254 1_1:-77472785 None:intergenic
ATATATCAGATATCGTAAAT+AGG 0.271891 1_1:-77473884 None:intergenic
TAATCAGGTTATTACTGATT+TGG 0.282582 1_1:+77472742 Msa0045530:intron
CACAAAATGCATGGAAGTTA+AGG 0.289530 1_1:+77474122 Msa0045530:three_prime_UTR
GAAGAAAGATATCAGAGATT+TGG 0.298345 1_1:+77472632 Msa0045530:CDS
TGTCATATATTGTTGGTCTT+TGG 0.307687 1_1:-77472790 None:intergenic
AAGTGGTAGCAGACTCCTTT+AGG 0.329582 1_1:+77473546 Msa0045530:CDS
TTCCCCAGGAATTTGACTTC+AGG 0.336858 1_1:+77472538 Msa0045530:intron
AAGAAAGATATCAGAGATTT+GGG 0.360869 1_1:+77472633 Msa0045530:CDS
CACATTCAAATCATTTGCTT+CGG 0.366493 1_1:+77471694 Msa0045530:CDS
TGAATGCAGCGGACGATAGA+TGG 0.372410 1_1:+77472923 Msa0045530:intron
TCTTGCATGTCATATATTGT+TGG 0.373534 1_1:-77472797 None:intergenic
CTGATATCTTTCTTCTCAGT+TGG 0.377354 1_1:-77472624 None:intergenic
GCCTTGTTATATAATCTGTT+TGG 0.394580 1_1:-77473932 None:intergenic
CTTTAAAATATAGATCTGTT+TGG 0.397300 1_1:-77473847 None:intergenic
ATTTACAGTTACAAAATGTA+AGG 0.400765 1_1:+77472589 Msa0045530:CDS
TATATCAGATATCGTAAATA+GGG 0.402152 1_1:-77473883 None:intergenic
TTTCTTCTTGCTCTTTAACC+TGG 0.402638 1_1:+77471545 Msa0045530:CDS
TCCCCAGGAATTTGACTTCA+GGG 0.410418 1_1:+77472539 Msa0045530:intron
ACGACACTTGCCATAGGAAA+TGG 0.413180 1_1:+77473007 Msa0045530:CDS
AGACCACTGCTGTTGGGTAT+AGG 0.414717 1_1:+77471954 Msa0045530:CDS
AAATCATGAACACACCTTAT+GGG 0.424094 1_1:-77471584 None:intergenic
TATGAATCATGATCATGAAT+AGG 0.431014 1_1:+77473904 Msa0045530:three_prime_UTR
CATAAACATCACCACTTAAG+AGG 0.438219 1_1:+77473991 Msa0045530:three_prime_UTR
CTTACATTTATCCCTCAGAT+TGG 0.440474 1_1:+77472160 Msa0045530:CDS
AGATTACTTACCATTTCCTA+TGG 0.448627 1_1:-77473017 None:intergenic
CCAACAGCAGTGGTCTTCTC+TGG 0.449995 1_1:-77471947 None:intergenic
ATTTGGTGTCTTGGTCGTCT+TGG 0.459995 1_1:-77474090 None:intergenic
TATACCACTCTTCACCACTA+TGG 0.462456 1_1:+77471519 Msa0045530:exon
GTGATGTGGCTAGGAGTTTG+TGG 0.466897 1_1:-77471436 None:intergenic
CATTTATCCCTCAGATTGGA+AGG 0.470985 1_1:+77472164 Msa0045530:CDS
TCTGTTTGGATTTGGTGTCT+TGG 0.479619 1_1:-77474099 None:intergenic
CAGAGAAGACCACTGCTGTT+GGG 0.485011 1_1:+77471948 Msa0045530:CDS
TCAGCTAAGAGTGAGTTTGC+TGG 0.485092 1_1:-77471999 None:intergenic
ATCATAATCACCTCTTCCAT+TGG 0.486106 1_1:-77472657 None:intergenic
TTAGTATCATCAAGAAAGAA+AGG 0.498552 1_1:-77474047 None:intergenic
TAGGCTCTTACTTTCTGTAC+TGG 0.501571 1_1:-77471769 None:intergenic
ACAAAAGATCGGTATCTGTC+TGG 0.502898 1_1:-77472117 None:intergenic
ATATTTCAATCTTGATGTGT+AGG 0.505775 1_1:-77473621 None:intergenic
ACAAAATGCATGGAAGTTAA+GGG 0.508559 1_1:+77474123 Msa0045530:three_prime_UTR
TTCATCCTACTTATCCCATA+AGG 0.512519 1_1:+77471570 Msa0045530:CDS
GTTATATAATCTGTTTGGCA+AGG 0.516645 1_1:-77473927 None:intergenic
TTAGACCTTGTGATGTGGCT+AGG 0.516779 1_1:-77471445 None:intergenic
TCCTATGGCAAGTGTCGTAA+AGG 0.521687 1_1:-77473002 None:intergenic
AAGATACTACACATTAATTG+TGG 0.525487 1_1:+77473481 Msa0045530:CDS
CCAGAGAAGACCACTGCTGT+TGG 0.535568 1_1:+77471947 Msa0045530:CDS
TATCAGAGATTTGGGTCCAA+TGG 0.538055 1_1:+77472641 Msa0045530:CDS
TAACAATGTCTCTTGTGCAA+TGG 0.546990 1_1:+77471737 Msa0045530:CDS
ACACACCTTATGGGATAAGT+AGG 0.562591 1_1:-77471575 None:intergenic
AGATTTGGGTCCAATGGAAG+AGG 0.563882 1_1:+77472647 Msa0045530:CDS
AGTACGAGATCAGCTTAAAG+TGG 0.565699 1_1:+77473529 Msa0045530:CDS
TCAGATGTCAAGGAGCCTAA+AGG 0.574123 1_1:-77473561 None:intergenic
CCAAACAGACACAAAATGCA+TGG 0.575218 1_1:+77474113 Msa0045530:three_prime_UTR
AGATACTACACATTAATTGT+GGG 0.575783 1_1:+77473482 Msa0045530:CDS
CGAAGCAAATGATTTGAATG+TGG 0.577902 1_1:-77471693 None:intergenic
ATGTAACATTTCAGATGTCA+AGG 0.578967 1_1:-77473571 None:intergenic
TATTGTTGGTCTTTGGTTTG+GGG 0.579380 1_1:-77472783 None:intergenic
TGGAAAACATTATTATACAA+TGG 0.592201 1_1:+77472943 Msa0045530:CDS
TTTACAGTTACAAAATGTAA+GGG 0.596231 1_1:+77472590 Msa0045530:CDS
TGATGTTTATGTGACTTTGA+AGG 0.599429 1_1:-77473979 None:intergenic
CTTCATAGTCGACAAAAGAT+CGG 0.601736 1_1:-77472128 None:intergenic
GGATAAGTAGGATGAAGTCC+AGG 0.607100 1_1:-77471563 None:intergenic
GCAAACTCACTCTTAGCTGA+AGG 0.608621 1_1:+77472002 Msa0045530:CDS
GCAAGAAGAAACTACCATAG+TGG 0.608868 1_1:-77471533 None:intergenic
AACAATATATGACATGCAAG+AGG 0.615986 1_1:+77472799 Msa0045530:CDS
AGATGGAAAGAAATAGTGAG+TGG 0.619866 1_1:-77471482 None:intergenic
TCCTTTACGACACTTGCCAT+AGG 0.621482 1_1:+77473001 Msa0045530:CDS
TATGGCAAGTGTCGTAAAGG+AGG 0.624367 1_1:-77472999 None:intergenic
AAACTCCTAGCCACATCACA+AGG 0.625733 1_1:+77471440 Msa0045530:five_prime_UTR
AGAATTTAGACCTTGTGATG+TGG 0.627994 1_1:-77471450 None:intergenic
CTGAGAATTACAGAAGGACG+AGG 0.638190 1_1:+77473781 Msa0045530:three_prime_UTR
AGTTTCTGTATTGCATACAG+AGG 0.646416 1_1:+77473705 Msa0045530:three_prime_UTR
TGGGAGCCAATGAAAGACGA+TGG 0.646942 1_1:+77473501 Msa0045530:CDS
ATGCAATGTATGTGTCAAAG+TGG 0.650682 1_1:-77473732 None:intergenic
TGCAATGTATGTGTCAAAGT+GGG 0.656188 1_1:-77473731 None:intergenic
ACTACCATAGTGGTGAAGAG+TGG 0.666095 1_1:-77471523 None:intergenic
GCTCCTATACCCAACAGCAG+TGG 0.673108 1_1:-77471957 None:intergenic
GCCAAACAGATTATATAACA+AGG 0.675376 1_1:+77473931 Msa0045530:three_prime_UTR
ATGAAACCAATGATAGCATG+TGG 0.678879 1_1:-77474169 None:intergenic
CAATCACTGAGAATTACAGA+AGG 0.696152 1_1:+77473775 Msa0045530:three_prime_UTR
AATGTATGTGTCAAAGTGGG+CGG 0.746612 1_1:-77473728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATAACATCTTTGTT+TGG + chr1_1:77472027-77472046 Msa0045530:intron 20.0%
!! GATAGTTAATATGAAAACAA+GGG - chr1_1:77472224-77472243 None:intergenic 20.0%
!! TGATAGTTAATATGAAAACA+AGG - chr1_1:77472225-77472244 None:intergenic 20.0%
!!! TTTTAAAAAGACTGATAATG+AGG - chr1_1:77472267-77472286 None:intergenic 20.0%
!! TTTGCGTAACTATATTAATA+AGG + chr1_1:77472360-77472379 Msa0045530:intron 20.0%
!! TTGCGTAACTATATTAATAA+GGG + chr1_1:77472361-77472380 Msa0045530:intron 20.0%
!! ATTTACAGTTACAAAATGTA+AGG + chr1_1:77472589-77472608 Msa0045530:CDS 20.0%
!! TTTACAGTTACAAAATGTAA+GGG + chr1_1:77472590-77472609 Msa0045530:CDS 20.0%
!!! TTCTTTTGGAAAAAACAAAT+TGG - chr1_1:77472850-77472869 None:intergenic 20.0%
!!! TTTTTCCAAAAGAATATCTT+AGG + chr1_1:77472856-77472875 Msa0045530:intron 20.0%
!! TGGAAAACATTATTATACAA+TGG + chr1_1:77472943-77472962 Msa0045530:CDS 20.0%
!! TCAGTATAATATAATAATGC+TGG + chr1_1:77473367-77473386 Msa0045530:intron 20.0%
!!! CTTTAAAATATAGATCTGTT+TGG - chr1_1:77473850-77473869 None:intergenic 20.0%
!! TATATCAGATATCGTAAATA+GGG - chr1_1:77473886-77473905 None:intergenic 20.0%
!! ATATATCAGATATCGTAAAT+AGG - chr1_1:77473887-77473906 None:intergenic 20.0%
!! TCTGGTATTTCTACAAAATA+AGG - chr1_1:77472102-77472121 None:intergenic 25.0%
! AAGAAAGATATCAGAGATTT+GGG + chr1_1:77472633-77472652 Msa0045530:CDS 25.0%
! TTAGATTCTGTCTTAATGTA+TGG + chr1_1:77472680-77472699 Msa0045530:intron 25.0%
!! TAATCAGGTTATTACTGATT+TGG + chr1_1:77472742-77472761 Msa0045530:intron 25.0%
!! CAAAACCTAAGATATTCTTT+TGG - chr1_1:77472864-77472883 None:intergenic 25.0%
!!! AAGAATATCTTAGGTTTTGA+TGG + chr1_1:77472865-77472884 Msa0045530:intron 25.0%
!! TTCTTTGAGAGAATATTTGT+TGG - chr1_1:77473068-77473087 None:intergenic 25.0%
! TAGTTGTTGTATTATCTAAC+AGG - chr1_1:77473118-77473137 None:intergenic 25.0%
!! TTCTTGTTGTATTATCTAAC+AGG - chr1_1:77473142-77473161 None:intergenic 25.0%
! AAAATGATTATAAGTGACAC+AGG + chr1_1:77473174-77473193 Msa0045530:intron 25.0%
!! GAATGTTATTAGCTTACATA+AGG - chr1_1:77473449-77473468 None:intergenic 25.0%
! TAATAACATTCACTTTGTAC+AGG + chr1_1:77473458-77473477 Msa0045530:intron 25.0%
! AAGATACTACACATTAATTG+TGG + chr1_1:77473481-77473500 Msa0045530:CDS 25.0%
! AGATACTACACATTAATTGT+GGG + chr1_1:77473482-77473501 Msa0045530:CDS 25.0%
! ATATTTCAATCTTGATGTGT+AGG - chr1_1:77473624-77473643 None:intergenic 25.0%
! TATGAATCATGATCATGAAT+AGG + chr1_1:77473904-77473923 Msa0045530:three_prime_UTR 25.0%
! TTAGTATCATCAAGAAAGAA+AGG - chr1_1:77474050-77474069 None:intergenic 25.0%
AAATCATGAACACACCTTAT+GGG - chr1_1:77471587-77471606 None:intergenic 30.0%
AAAATCATGAACACACCTTA+TGG - chr1_1:77471588-77471607 None:intergenic 30.0%
CACATTCAAATCATTTGCTT+CGG + chr1_1:77471694-77471713 Msa0045530:CDS 30.0%
!! AGTCATTTTAACCACACTTT+AGG - chr1_1:77471791-77471810 None:intergenic 30.0%
TGATAAAGGTAGATTACTTC+TGG - chr1_1:77471882-77471901 None:intergenic 30.0%
! TCAGATCAAAGCTTTGATAA+AGG - chr1_1:77471896-77471915 None:intergenic 30.0%
! CTTTGTTTGGATATGTAAAG+AGG + chr1_1:77472040-77472059 Msa0045530:intron 30.0%
! AATTTTACCTTCCAATCTGA+GGG - chr1_1:77472174-77472193 None:intergenic 30.0%
! TAAAAAGACTGATAATGAGG+TGG - chr1_1:77472264-77472283 None:intergenic 30.0%
GACAAACTTGTAGAAAATTG+TGG - chr1_1:77472500-77472519 None:intergenic 30.0%
GAAGAAAGATATCAGAGATT+TGG + chr1_1:77472632-77472651 Msa0045530:CDS 30.0%
!! ATATTGTTGGTCTTTGGTTT+GGG - chr1_1:77472787-77472806 None:intergenic 30.0%
!! TATATTGTTGGTCTTTGGTT+TGG - chr1_1:77472788-77472807 None:intergenic 30.0%
!! TGTCATATATTGTTGGTCTT+TGG - chr1_1:77472793-77472812 None:intergenic 30.0%
TCTTGCATGTCATATATTGT+TGG - chr1_1:77472800-77472819 None:intergenic 30.0%
AACAATATATGACATGCAAG+AGG + chr1_1:77472799-77472818 Msa0045530:CDS 30.0%
GATTGTTTGTCAATATGCAT+TGG - chr1_1:77472891-77472910 None:intergenic 30.0%
AGATTACTTACCATTTCCTA+TGG - chr1_1:77473020-77473039 None:intergenic 30.0%
! ATTAGCTTACATAAGGAGTT+AGG - chr1_1:77473442-77473461 None:intergenic 30.0%
!!! TTTTTTCCATCGTCTTTCAT+TGG - chr1_1:77473510-77473529 None:intergenic 30.0%
ATGTAACATTTCAGATGTCA+AGG - chr1_1:77473574-77473593 None:intergenic 30.0%
TCTTGATGTGTAGGAAAAAT+TGG - chr1_1:77473615-77473634 None:intergenic 30.0%
GTTATATAATCTGTTTGGCA+AGG - chr1_1:77473930-77473949 None:intergenic 30.0%
GCCAAACAGATTATATAACA+AGG + chr1_1:77473931-77473950 Msa0045530:three_prime_UTR 30.0%
! GCCTTGTTATATAATCTGTT+TGG - chr1_1:77473935-77473954 None:intergenic 30.0%
TGATGTTTATGTGACTTTGA+AGG - chr1_1:77473982-77474001 None:intergenic 30.0%
! TTGGCTTTCACAATTGAAAT+TGG - chr1_1:77474074-77474093 None:intergenic 30.0%
! ATTTTGTGTCTGTTTGGATT+TGG - chr1_1:77474110-77474129 None:intergenic 30.0%
ACAAAATGCATGGAAGTTAA+GGG + chr1_1:77474123-77474142 Msa0045530:three_prime_UTR 30.0%
AGAATTTAGACCTTGTGATG+TGG - chr1_1:77471453-77471472 None:intergenic 35.0%
AGATGGAAAGAAATAGTGAG+TGG - chr1_1:77471485-77471504 None:intergenic 35.0%
!!! ATAGAGCTTCAGTTTTGAGA+TGG - chr1_1:77471502-77471521 None:intergenic 35.0%
TTTCTTCTTGCTCTTTAACC+TGG + chr1_1:77471545-77471564 Msa0045530:CDS 35.0%
TTCATCCTACTTATCCCATA+AGG + chr1_1:77471570-77471589 Msa0045530:CDS 35.0%
CGAAGCAAATGATTTGAATG+TGG - chr1_1:77471696-77471715 None:intergenic 35.0%
TAACAATGTCTCTTGTGCAA+TGG + chr1_1:77471737-77471756 Msa0045530:CDS 35.0%
CTTCATAGTCGACAAAAGAT+CGG - chr1_1:77472131-77472150 None:intergenic 35.0%
!! TCTTTTGTCGACTATGAAGA+TGG + chr1_1:77472132-77472151 Msa0045530:CDS 35.0%
CTTACATTTATCCCTCAGAT+TGG + chr1_1:77472160-77472179 Msa0045530:CDS 35.0%
! GAATTTTACCTTCCAATCTG+AGG - chr1_1:77472175-77472194 None:intergenic 35.0%
!! CATCATACTGATTCACAAGA+TGG + chr1_1:77472194-77472213 Msa0045530:intron 35.0%
ACACGAATTAGTACACACAA+TGG + chr1_1:77472412-77472431 Msa0045530:intron 35.0%
CAAAACTTACGATAAGACAG+AGG + chr1_1:77472459-77472478 Msa0045530:intron 35.0%
CTGATATCTTTCTTCTCAGT+TGG - chr1_1:77472627-77472646 None:intergenic 35.0%
ATCATAATCACCTCTTCCAT+TGG - chr1_1:77472660-77472679 None:intergenic 35.0%
AACCAGTTTGTGTCTTAATC+AGG + chr1_1:77472727-77472746 Msa0045530:intron 35.0%
AACCTGATTAAGACACAAAC+TGG - chr1_1:77472732-77472751 None:intergenic 35.0%
!! TATTGTTGGTCTTTGGTTTG+GGG - chr1_1:77472786-77472805 None:intergenic 35.0%
TTTCTGAATTCTGAATGCAG+CGG + chr1_1:77472912-77472931 Msa0045530:intron 35.0%
TATCACACTGAGATTTGAGA+TGG - chr1_1:77473044-77473063 None:intergenic 35.0%
TCGCGTAATTTCGAAGAAAT+TGG - chr1_1:77473270-77473289 None:intergenic 35.0%
! GGAGTTTTCAATGCAATCAA+AGG + chr1_1:77473343-77473362 Msa0045530:intron 35.0%
TATACAATGGCATGAACTCA+TGG + chr1_1:77473415-77473434 Msa0045530:intron 35.0%
AGTTTCTGTATTGCATACAG+AGG + chr1_1:77473705-77473724 Msa0045530:three_prime_UTR 35.0%
TGCAATGTATGTGTCAAAGT+GGG - chr1_1:77473734-77473753 None:intergenic 35.0%
ATGCAATGTATGTGTCAAAG+TGG - chr1_1:77473735-77473754 None:intergenic 35.0%
CAATCACTGAGAATTACAGA+AGG + chr1_1:77473775-77473794 Msa0045530:three_prime_UTR 35.0%
CATAAACATCACCACTTAAG+AGG + chr1_1:77473991-77474010 Msa0045530:three_prime_UTR 35.0%
! AGTTTTCTTCACCTCTTAAG+TGG - chr1_1:77474005-77474024 None:intergenic 35.0%
CACAAAATGCATGGAAGTTA+AGG + chr1_1:77474122-77474141 Msa0045530:three_prime_UTR 35.0%
TATACCACTCTTCACCACTA+TGG + chr1_1:77471519-77471538 Msa0045530:exon 40.0%
GCAAGAAGAAACTACCATAG+TGG - chr1_1:77471536-77471555 None:intergenic 40.0%
ACACACCTTATGGGATAAGT+AGG - chr1_1:77471578-77471597 None:intergenic 40.0%
TAGGCTCTTACTTTCTGTAC+TGG - chr1_1:77471772-77471791 None:intergenic 40.0%
GAAAGTAAGAGCCTAAAGTG+TGG + chr1_1:77471777-77471796 Msa0045530:intron 40.0%
ACAAAAGATCGGTATCTGTC+TGG - chr1_1:77472120-77472139 None:intergenic 40.0%
CATTTATCCCTCAGATTGGA+AGG + chr1_1:77472164-77472183 Msa0045530:CDS 40.0%
TATCAGAGATTTGGGTCCAA+TGG + chr1_1:77472641-77472660 Msa0045530:CDS 40.0%
CTCAATGTTGTCTCTCTACT+GGG - chr1_1:77473225-77473244 None:intergenic 40.0%
TCTCAATGTTGTCTCTCTAC+TGG - chr1_1:77473226-77473245 None:intergenic 40.0%
ACATACAGAAGTTCAACTGC+AGG + chr1_1:77473322-77473341 Msa0045530:intron 40.0%
AGTACGAGATCAGCTTAAAG+TGG + chr1_1:77473529-77473548 Msa0045530:CDS 40.0%
AATGTATGTGTCAAAGTGGG+CGG - chr1_1:77473731-77473750 None:intergenic 40.0%
!! TCTGTTTGGATTTGGTGTCT+TGG - chr1_1:77474102-77474121 None:intergenic 40.0%
! CCATGCATTTTGTGTCTGTT+TGG - chr1_1:77474116-77474135 None:intergenic 40.0%
CCAAACAGACACAAAATGCA+TGG + chr1_1:77474113-77474132 Msa0045530:three_prime_UTR 40.0%
AAACTCCTAGCCACATCACA+AGG + chr1_1:77471440-77471459 Msa0045530:five_prime_UTR 45.0%
TTAGACCTTGTGATGTGGCT+AGG - chr1_1:77471448-77471467 None:intergenic 45.0%
ACTACCATAGTGGTGAAGAG+TGG - chr1_1:77471526-77471545 None:intergenic 45.0%
GGATAAGTAGGATGAAGTCC+AGG - chr1_1:77471566-77471585 None:intergenic 45.0%
TCAGCTAAGAGTGAGTTTGC+TGG - chr1_1:77472002-77472021 None:intergenic 45.0%
GCAAACTCACTCTTAGCTGA+AGG + chr1_1:77472002-77472021 Msa0045530:CDS 45.0%
! TTCCCCAGGAATTTGACTTC+AGG + chr1_1:77472538-77472557 Msa0045530:intron 45.0%
! TCCCCAGGAATTTGACTTCA+GGG + chr1_1:77472539-77472558 Msa0045530:intron 45.0%
TGCCCTGAAGTCAAATTCCT+GGG - chr1_1:77472544-77472563 None:intergenic 45.0%
AGATTTGGGTCCAATGGAAG+AGG + chr1_1:77472647-77472666 Msa0045530:CDS 45.0%
! TATGGCAAGTGTCGTAAAGG+AGG - chr1_1:77473002-77473021 None:intergenic 45.0%
TCCTTTACGACACTTGCCAT+AGG + chr1_1:77473001-77473020 Msa0045530:CDS 45.0%
! TCCTATGGCAAGTGTCGTAA+AGG - chr1_1:77473005-77473024 None:intergenic 45.0%
ACGACACTTGCCATAGGAAA+TGG + chr1_1:77473007-77473026 Msa0045530:CDS 45.0%
AAGTGGTAGCAGACTCCTTT+AGG + chr1_1:77473546-77473565 Msa0045530:CDS 45.0%
TCAGATGTCAAGGAGCCTAA+AGG - chr1_1:77473564-77473583 None:intergenic 45.0%
CTGAGAATTACAGAAGGACG+AGG + chr1_1:77473781-77473800 Msa0045530:three_prime_UTR 45.0%
!! ATTTGGTGTCTTGGTCGTCT+TGG - chr1_1:77474093-77474112 None:intergenic 45.0%
!!! TTTCTTTTTTAATTATTATT+AGG + chr1_1:77471918-77471937 Msa0045530:intron 5.0%
!! AATTATAATAAAATATACAA+TGG + chr1_1:77473402-77473421 Msa0045530:intron 5.0%
CAGAGAAGACCACTGCTGTT+GGG + chr1_1:77471948-77471967 Msa0045530:CDS 50.0%
AGACCACTGCTGTTGGGTAT+AGG + chr1_1:77471954-77471973 Msa0045530:CDS 50.0%
! GTCTGAGTGATCTTTTCCCC+AGG + chr1_1:77472524-77472543 Msa0045530:intron 50.0%
GCCCTGAAGTCAAATTCCTG+GGG - chr1_1:77472543-77472562 None:intergenic 50.0%
GTGCCCTGAAGTCAAATTCC+TGG - chr1_1:77472545-77472564 None:intergenic 50.0%
TGAATGCAGCGGACGATAGA+TGG + chr1_1:77472923-77472942 Msa0045530:intron 50.0%
TGGGAGCCAATGAAAGACGA+TGG + chr1_1:77473501-77473520 Msa0045530:CDS 50.0%
CCAACAGCAGTGGTCTTCTC+TGG - chr1_1:77471950-77471969 None:intergenic 55.0%
CCAGAGAAGACCACTGCTGT+TGG + chr1_1:77471947-77471966 Msa0045530:CDS 55.0%
GCTCCTATACCCAACAGCAG+TGG - chr1_1:77471960-77471979 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77471438 77474178 77471438 ID=Msa0045530;Name=Msa0045530
chr1_1 mRNA 77471438 77474178 77471438 ID=Msa0045530-mRNA-1;Parent=Msa0045530;Name=Msa0045530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=100|1|1|1|1|1|8|595|234
chr1_1 exon 77471438 77471591 77471438 ID=Msa0045530-mRNA-1:exon:26440;Parent=Msa0045530-mRNA-1
chr1_1 exon 77471684 77471780 77471684 ID=Msa0045530-mRNA-1:exon:26441;Parent=Msa0045530-mRNA-1
chr1_1 exon 77471940 77472023 77471940 ID=Msa0045530-mRNA-1:exon:26442;Parent=Msa0045530-mRNA-1
chr1_1 exon 77472112 77472185 77472112 ID=Msa0045530-mRNA-1:exon:26443;Parent=Msa0045530-mRNA-1
chr1_1 exon 77472546 77472668 77472546 ID=Msa0045530-mRNA-1:exon:26444;Parent=Msa0045530-mRNA-1
chr1_1 exon 77472749 77472820 77472749 ID=Msa0045530-mRNA-1:exon:26445;Parent=Msa0045530-mRNA-1
chr1_1 exon 77472932 77473028 77472932 ID=Msa0045530-mRNA-1:exon:26446;Parent=Msa0045530-mRNA-1
chr1_1 exon 77473480 77474178 77473480 ID=Msa0045530-mRNA-1:exon:26447;Parent=Msa0045530-mRNA-1
chr1_1 five_prime_UTR 77471438 77471537 77471438 ID=Msa0045530-mRNA-1:five_prime_utr;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77471538 77471591 77471538 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77471684 77471780 77471684 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77471940 77472023 77471940 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77472112 77472185 77472112 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77472546 77472668 77472546 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77472749 77472820 77472749 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77472932 77473028 77472932 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 CDS 77473480 77473583 77473480 ID=Msa0045530-mRNA-1:cds;Parent=Msa0045530-mRNA-1
chr1_1 three_prime_UTR 77473584 77474178 77473584 ID=Msa0045530-mRNA-1:three_prime_utr;Parent=Msa0045530-mRNA-1
Gene Sequence

>Msa0045530

ATGGTAGTTTCTTCTTGCTCTTTAACCTGGACTTCATCCTACTTATCCCATAAGCTAAACTTGCCACATTCAAATCATTTGCTTCGGAATACTACAACTTCATCTTCTAACAATGTCTCTTGTGCAATGGAAACAACTTCCAGTACAGAAAGACACTGCCAGAGAAGACCACTGCTGTTGGGTATAGGAGCATTGACAGCAAATTTGTTACCAGCAAACTCACTCTTAGCTGAAGAAATACCAGACAGATACCGATCTTTTGTCGACTATGAAGATGGATATTCTTACATTTATCCCTCAGATTGGAAGGAATTTGACTTCAGGGCACACGATTCTGCATTCAAAGACAGATATTTACAGTTACAAAATGTAAGGGTGAGATTCATACCAACTGAGAAGAAAGATATCAGAGATTTGGGTCCAATGGAAGAGGTTATTACTGATTTGGTGAAACATAGATATGCTGCCCCAAACCAAAGACCAACAATATATGACATGCAAGAGCGGACGATAGATGGAAAACATTATTATACAATGGAATATGTACTTACATCACGAAATTACGCTAGTGCCTCCTTTACGACACTTGCCATAGGAAATGGAAGATACTACACATTAATTGTGGGAGCCAATGAAAGACGATGGAAAAAAGTACGAGATCAGCTTAAAGTGGTAGCAGACTCCTTTAGGCTCCTTGACATCTGA

Protein sequence

>Msa0045530

MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNVSCAMETTSSTERHCQRRPLLLGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYLQLQNVRVRFIPTEKKDIRDLGPMEEVITDLVKHRYAAPNQRPTIYDMQERTIDGKHYYTMEYVLTSRNYASASFTTLAIGNGRYYTLIVGANERRWKKVRDQLKVVADSFRLLDI*