AlfalfaGEDB | Msa1339520

M. sativa cultivar zhongmu-4 / Msa1339520

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339520	XP_003591770.1	92.905	296	9	2	1	296	1	284	0.0	561

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339520	sp\|Q8L440\|ORRM1_ARATH	65.665	233	67	3	63	295	152	371	4.24e-103	308
Msa1339520	sp\|Q8L440\|ORRM1_ARATH	50.000	86	43	0	86	171	72	157	1.14e-25	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339520	G7I363	92.905	296	9	2	1	296	1	284	0.0	561

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1339520	0.811848	5.700663e-51	-8.615850e-47
Msa0000220	Msa1339520	0.816283	5.990551e-52	-8.615850e-47
Msa0001510	Msa1339520	0.802284	6.036496e-49	-8.615850e-47
Msa0007570	Msa1339520	0.810527	1.102572e-50	-8.615850e-47
Msa0011910	Msa1339520	0.809760	1.613806e-50	-8.615850e-47
Msa0017980	Msa1339520	0.830279	3.210791e-55	-8.615850e-47
Msa0021240	Msa1339520	0.829704	4.435591e-55	-8.615850e-47
Msa0022960	Msa1339520	0.832017	1.201750e-55	-8.615850e-47
Msa0024070	Msa1339520	0.809018	2.328189e-50	-8.615850e-47
Msa0024320	Msa1339520	0.817134	3.859363e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339520	MtrunA17_Chr1g0198431	92.905	296	9	2	1	296	1	284	0.0	561
Msa1339520	MtrunA17_Chr1g0166671	44.068	118	64	2	56	171	52	169	1.07e-27	107
Msa1339520	MtrunA17_Chr1g0187251	36.364	121	77	0	78	198	94	214	2.10e-23	95.9
Msa1339520	MtrunA17_Chr2g0280611	29.570	186	128	1	1	183	1	186	4.28e-21	89.7
Msa1339520	MtrunA17_Chr7g0266751	47.191	89	40	1	198	286	33	114	1.46e-19	83.2
Msa1339520	MtrunA17_Chr6g0481071	44.048	84	40	1	198	281	96	172	6.69e-19	82.4
Msa1339520	MtrunA17_Chr7g0263001	44.211	95	46	1	192	286	30	117	2.29e-18	79.7
Msa1339520	MtrunA17_Chr4g0042161	40.230	87	45	1	199	285	53	132	5.89e-17	76.3
Msa1339520	MtrunA17_Chr3g0121631	37.931	87	50	1	179	261	18	104	7.52e-15	70.5
Msa1339520	MtrunA17_Chr4g0042151	36.667	90	47	2	199	288	46	125	9.07e-15	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339520	AT3G20930.1	65.665	233	67	3	63	295	152	371	4.31e-104	308
Msa1339520	AT3G20930.1	50.000	86	43	0	86	171	72	157	1.16e-26	107
Msa1339520	AT3G20930.2	64.286	238	67	4	63	295	152	376	7.86e-102	303
Msa1339520	AT3G20930.2	50.000	86	43	0	86	171	72	157	1.06e-26	108
Msa1339520	AT1G32580.1	43.478	115	64	1	58	171	66	180	9.30e-28	107
Msa1339520	AT2G35240.1	37.500	136	84	1	56	190	67	202	3.26e-25	101
Msa1339520	AT1G73530.1	44.330	97	44	2	198	294	78	164	7.13e-19	82.8
Msa1339520	AT4G13850.4	38.739	111	60	2	174	284	13	115	2.86e-17	77.0
Msa1339520	AT4G13850.3	39.130	115	60	3	174	286	13	119	3.02e-17	77.4
Msa1339520	AT4G13850.2	39.130	115	60	3	174	286	13	119	3.74e-17	77.4

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Find 106 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGAATTACATGAAA+TGG	0.362195	tig0003352:+16119	None:intergenic
AAAATACTAAAATTTAATTT+TGG	0.239857	tig0003352:-13034	Msa1339520:three_prime_UTR
AAAGCATTGGGTTGTTAGAA+TGG	0.404538	tig0003352:-16022	Msa1339520:CDS
AAATGTAAATGTAGGGATAT+TGG	0.346471	tig0003352:+13246	None:intergenic
AAATTCTTCTGAAGCAAGTC+AGG	0.439004	tig0003352:-14631	Msa1339520:CDS
AACACAATCCTAAGGTTTCA+TGG	0.386887	tig0003352:+16302	None:intergenic
AACATCTCCGGAGAATATTA+TGG	0.243718	tig0003352:+13406	None:intergenic
AATGCATGCTTCATTCAACA+AGG	0.670821	tig0003352:-13567	Msa1339520:three_prime_UTR
AATGCTTTGAATTTCCATTA+GGG	0.351537	tig0003352:+16037	None:intergenic
ACACAATCCTAAGGTTTCAT+GGG	0.554807	tig0003352:+16303	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTCTTTGATTCATTCTCAA+TGG	+	tig0003352:13068-13087	None:intergenic	30.0%
ATGTTTGTAACACAATCCTA+AGG	+	tig0003352:13121-13140	None:intergenic	30.0%
TTAGGATTGTGTTACAAACA+TGG	-	tig0003352:13120-13139	Msa1339520:three_prime_UTR	30.0%
TGCTGAAATTCTAGTAAAAG+AGG	+	tig0003352:13311-13330	None:intergenic	30.0%
ATTAGGGAACAACAACATAT+CGG	+	tig0003352:13362-13381	None:intergenic	30.0%
CTAATGGAAATTCAAAGCAT+TGG	-	tig0003352:13377-13396	Msa1339520:three_prime_UTR	30.0%
TGGTCAAAATTTGAGCATAA+TGG	+	tig0003352:13459-13478	None:intergenic	30.0%
AAATCATGGGAAAGTAAGTA+AGG	-	tig0003352:13479-13498	Msa1339520:three_prime_UTR	30.0%
TTCACAACAAAACCCAAAAT+TGG	+	tig0003352:13637-13656	None:intergenic	30.0%
TATTAGCAAAAAGTTCCCAA+AGG	+	tig0003352:13890-13909	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0003352	gene	13020	16414	13020	ID=Msa1339520;Name=Msa1339520
tig0003352	mRNA	13020	16414	13020	ID=Msa1339520-mRNA-1;Parent=Msa1339520;Name=Msa1339520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119\|0.85\|0.87\|1\|0.85\|0.75\|8\|607\|296
tig0003352	exon	13020	13606	13020	ID=Msa1339520-mRNA-1:exon:2178;Parent=Msa1339520-mRNA-1
tig0003352	exon	13889	13995	13889	ID=Msa1339520-mRNA-1:exon:2177;Parent=Msa1339520-mRNA-1
tig0003352	exon	14117	14244	14117	ID=Msa1339520-mRNA-1:exon:2176;Parent=Msa1339520-mRNA-1
tig0003352	exon	14328	14396	14328	ID=Msa1339520-mRNA-1:exon:2175;Parent=Msa1339520-mRNA-1
tig0003352	exon	14595	14684	14595	ID=Msa1339520-mRNA-1:exon:2174;Parent=Msa1339520-mRNA-1
tig0003352	exon	15580	15645	15580	ID=Msa1339520-mRNA-1:exon:2173;Parent=Msa1339520-mRNA-1
tig0003352	exon	15747	15844	15747	ID=Msa1339520-mRNA-1:exon:2172;Parent=Msa1339520-mRNA-1
tig0003352	exon	15943	16414	15943	ID=Msa1339520-mRNA-1:exon:2171;Parent=Msa1339520-mRNA-1
tig0003352	five_prime_UTR	16296	16414	16296	ID=Msa1339520-mRNA-1:five_prime_utr;Parent=Msa1339520-mRNA-1
tig0003352	CDS	15943	16295	15943	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	CDS	15747	15844	15747	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	CDS	15580	15645	15580	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	CDS	14595	14684	14595	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	CDS	14328	14396	14328	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	CDS	14117	14244	14117	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	CDS	13909	13995	13909	ID=Msa1339520-mRNA-1:cds;Parent=Msa1339520-mRNA-1
tig0003352	three_prime_UTR	13889	13908	13889	ID=Msa1339520-mRNA-1:three_prime_utr;Parent=Msa1339520-mRNA-1
tig0003352	three_prime_UTR	13020	13606	13020	ID=Msa1339520-mRNA-1:three_prime_utr;Parent=Msa1339520-mRNA-1

Gene Sequence

>Msa1339520

ATGGAAGTTCTGTCTCTCTCCGTTACATTCACCAAATTTCAAACCTTTTCCTCTTTCAAACCAAAAAACACAACCCAAATTCACCAACTTCCAATAAAAACAAAACTACCCAACAAAAACAATCACTTTACTAATCTTCCCTCTTCTTCTTGTTCCATTTCATGTAATTCCTCTTTTACTAGAATTTCAGCAACAAGTAACCAAACATCAACTTCACAAACCGATATGTTGTTGTTCCCTAATGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGCTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGACCATTATGCTCAAATTTTGACCAAAATCATGGGAAATGAAAAGGATGCACAAATGTGTATATATCATGTTTCATGGAAAACCAATTTTGGGTTTTGTTGTGAACTTGATGAGGATTGTGCACATGAGCTAGCTGGTGTGCCTGGTGTCTTGTCTGTTCAGCCAGATGACAATTTTGAGTCTGAAAATAAGGATTATGAAGGTAGAAATTTGGAAAATAGTCTGAATATGCCAAATTCTTCTGAAGCAAGTCAGGAAGCTTCTGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGCGCCGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTTAAAGTTATTATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCCGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGGTAGATCCATCTTTCTTTCATATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACCACCCCACCAAGATACAACAAGGGTCGTGCCAGACCATCTGCTTGA

Protein sequence

>Msa1339520

MEVLSLSVTFTKFQTFSSFKPKNTTQIHQLPIKTKLPNKNNHFTNLPSSSCSISCNSSFTRISATSNQTSTSQTDMLLFPNGNSKHWVVRMDKPAVGVVTKAQIVDHYAQILTKIMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAHELAGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKVDPSFFHIINGWMIVVDVAKTTPPRYNKGRARPSA*