AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1315990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315990 MtrunA17_Chr8g0345861 77.059 170 17 2 1 149 1 169 1.52e-73 217
Msa1315990 MtrunA17_Chr7g0276381 43.452 168 54 5 17 148 15 177 2.51e-33 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315990 AT2G46820.2 43.357 143 45 4 39 149 35 173 9.41e-28 101
Msa1315990 AT2G46820.1 43.357 143 45 4 39 149 35 173 9.41e-28 101
Msa1315990 AT1G52220.1 28.972 107 52 2 63 148 52 155 2.85e-11 58.5

Find 49 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTATGCATACCTTTC+TGG 0.079710 8_4:-15655830 None:intergenic
CTGAAATAATTGGGAGTTAA+AGG 0.160593 8_4:+15655991 Msa1315990:CDS
GAAACAATTACTGAAATAAT+TGG 0.197705 8_4:+15655981 Msa1315990:CDS
TTTAGTGCATAAGGACATTT+TGG 0.202304 8_4:+15656215 Msa1315990:three_prime_UTR
TCAATCATCTTTAGTGCATA+AGG 0.341287 8_4:+15656206 Msa1315990:three_prime_UTR
CAGAGAAGAAGAGGAGATTA+AGG 0.361311 8_4:-15654157 None:intergenic
TAATTGGGAGTTAAAGGAAT+TGG 0.364137 8_4:+15655997 Msa1315990:exon
CTTAATCTCCTCTTCTTCTC+TGG 0.368815 8_4:+15654158 Msa1315990:CDS
CAAGAAAATAATAAATTACA+TGG 0.393724 8_4:-15656127 None:intergenic
ATAATAAATTACATGGGATA+AGG 0.395512 8_4:-15656120 None:intergenic
TGCTTGGACCATGCCATGAT+AGG 0.406756 8_4:-15656248 None:intergenic
AAATTACATGGGATAAGGTT+TGG 0.410562 8_4:-15656115 None:intergenic
TCGATCGGACTTTAGTCGTC+TGG 0.414333 8_4:-15656305 None:intergenic
AAAGATTGCTCGTGATGTTA+TGG 0.420998 8_4:+15654562 Msa1315990:CDS
TGGTGCAATAAAACCTATCA+TGG 0.432794 8_4:+15656235 Msa1315990:three_prime_UTR
TAGCTAGTGTATTTGCACTA+TGG 0.434144 8_4:+15654808 Msa1315990:CDS
ATTCTATTGAAGATTTCATC+AGG 0.442328 8_4:+15656064 Msa1315990:three_prime_UTR
ATCCAACTTCTTTGATTGCA+AGG 0.444865 8_4:+15654194 Msa1315990:CDS
GATGTTATGGTAATGGCAAC+AGG 0.459632 8_4:+15654575 Msa1315990:CDS
TTTGCACTATGGAGCTCAGC+TGG 0.465802 8_4:+15654819 Msa1315990:CDS
AAACAATTACTGAAATAATT+GGG 0.466670 8_4:+15655982 Msa1315990:CDS
TGAAGATTCTTAACAAACTC+AGG 0.486308 8_4:-15654632 None:intergenic
ATTTATGTAGGTATAATTTG+AGG 0.492813 8_4:-15656345 None:intergenic
TCAGTTGAGTCAACTTCTGT+TGG 0.503744 8_4:-15654605 None:intergenic
TAAATATGCAGTGGGTTCAT+TGG 0.505381 8_4:+15654782 Msa1315990:CDS
AGCCTTGCAATCAAAGAAGT+TGG 0.507568 8_4:-15654196 None:intergenic
AAAAGTAGGCTCTTAGCCTT+AGG 0.508281 8_4:+15656270 Msa1315990:three_prime_UTR
CTCACACATTGTGGAGAAGA+AGG 0.510137 8_4:-15654234 None:intergenic
ATCAAAGAAGTTGGATGAAG+AGG 0.515656 8_4:-15654187 None:intergenic
CTGGCTCTTGAGCCAGCCTA+AGG 0.517836 8_4:-15656286 None:intergenic
TACGAGATAATTTATTCGAT+CGG 0.531066 8_4:-15656320 None:intergenic
AGGAATTGGACATTCTAAGA+TGG 0.536705 8_4:+15656011 Msa1315990:three_prime_UTR
TGATAATTTACAAATGAATG+TGG 0.540351 8_4:-15654014 None:intergenic
GGATATAGCCAGAGAAGAAG+AGG 0.549137 8_4:-15654166 None:intergenic
TGCTCGTGATGTTATGGTAA+TGG 0.557462 8_4:+15654568 Msa1315990:CDS
TTTGATGATAAATATGCAGT+GGG 0.562064 8_4:+15654774 Msa1315990:CDS
GTAGGCTCTTAGCCTTAGGC+TGG 0.563017 8_4:+15656274 Msa1315990:three_prime_UTR
TGAGACAACAAAGGGAGTGA+TGG 0.568925 8_4:-15654270 None:intergenic
CATGATTCTGAGACAACAAA+GGG 0.569254 8_4:-15654278 None:intergenic
ATTTGATGATAAATATGCAG+TGG 0.570116 8_4:+15654773 Msa1315990:CDS
TGTTCATTAATTAATAACAA+TGG 0.586035 8_4:+15654134 Msa1315990:exon
TCGACTACACTTACAATGAG+TGG 0.598870 8_4:-15654310 None:intergenic
CAATAAAACCTATCATGGCA+TGG 0.609840 8_4:+15656240 Msa1315990:three_prime_UTR
GTGGAAAGGCTCACACATTG+TGG 0.610597 8_4:-15654243 None:intergenic
GGCATGGTCCAAGCAAAAGT+AGG 0.624766 8_4:+15656256 Msa1315990:three_prime_UTR
CAAAGGGAGTGATGGAAGTG+TGG 0.624994 8_4:-15654262 None:intergenic
GCATGATTCTGAGACAACAA+AGG 0.640301 8_4:-15654279 None:intergenic
GGAGTGATGGAAGTGTGGAA+AGG 0.647061 8_4:-15654257 None:intergenic
AAGAAAATAATAAATTACAT+GGG 0.660496 8_4:-15656126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr8_4:15655682-15655701 Msa1315990:intron 0.0%
!! ATATATATATATATATATAT+AGG + chr8_4:15655682-15655701 Msa1315990:intron 0.0%
!! AAAATAAATAACATAATTCT+AGG - chr8_4:15654732-15654751 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG + chr8_4:15654734-15654753 Msa1315990:intron 10.0%
!! TTTCAAAAAAAAAAAATACA+AGG - chr8_4:15655093-15655112 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG - chr8_4:15655466-15655485 None:intergenic 10.0%
!! TATATATATATATATATAGG+AGG + chr8_4:15655711-15655730 Msa1315990:intron 10.0%
!! AAGAAAATAATAAATTACAT+GGG - chr8_4:15656129-15656148 None:intergenic 10.0%
!! AAAATAAATAACATAATTCT+AGG - chr8_4:15654732-15654751 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG + chr8_4:15654734-15654753 Msa1315990:intron 10.0%
!! TTTCAAAAAAAAAAAATACA+AGG - chr8_4:15655093-15655112 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG - chr8_4:15655466-15655485 None:intergenic 10.0%
!! TATATATATATATATATAGG+AGG + chr8_4:15655711-15655730 Msa1315990:intron 10.0%
!! AAGAAAATAATAAATTACAT+GGG - chr8_4:15656129-15656148 None:intergenic 10.0%
!! TGTTCATTAATTAATAACAA+TGG + chr8_4:15654134-15654153 Msa1315990:exon 15.0%
!! TCAATAATAAACATTAAGAA+AGG - chr8_4:15654709-15654728 None:intergenic 15.0%
!!! TATTTTGTCATAAAATCAAA+TGG - chr8_4:15655642-15655661 None:intergenic 15.0%
!! AAACAATTACTGAAATAATT+GGG + chr8_4:15655982-15656001 Msa1315990:CDS 15.0%
!! CAAGAAAATAATAAATTACA+TGG - chr8_4:15656130-15656149 None:intergenic 15.0%
!!! AAAATAAGATTGTTTTAAAG+TGG - chr8_4:15656185-15656204 None:intergenic 15.0%
!! TGTTCATTAATTAATAACAA+TGG + chr8_4:15654134-15654153 Msa1315990:exon 15.0%
!! TCAATAATAAACATTAAGAA+AGG - chr8_4:15654709-15654728 None:intergenic 15.0%
!!! TATTTTGTCATAAAATCAAA+TGG - chr8_4:15655642-15655661 None:intergenic 15.0%
!! AAACAATTACTGAAATAATT+GGG + chr8_4:15655982-15656001 Msa1315990:CDS 15.0%
!! CAAGAAAATAATAAATTACA+TGG - chr8_4:15656130-15656149 None:intergenic 15.0%
!!! AAAATAAGATTGTTTTAAAG+TGG - chr8_4:15656185-15656204 None:intergenic 15.0%
!! TGATAATTTACAAATGAATG+TGG - chr8_4:15654017-15654036 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG + chr8_4:15655035-15655054 Msa1315990:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG - chr8_4:15655506-15655525 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG + chr8_4:15655505-15655524 Msa1315990:intron 20.0%
!! AAATATAGAAGATGAATACT+AGG - chr8_4:15655770-15655789 None:intergenic 20.0%
!! TTCACTATAATTTATCACAA+TGG + chr8_4:15655863-15655882 Msa1315990:intron 20.0%
!! AGAACTTATACAAAAACTAA+AGG + chr8_4:15655959-15655978 Msa1315990:CDS 20.0%
!! GAAACAATTACTGAAATAAT+TGG + chr8_4:15655981-15656000 Msa1315990:CDS 20.0%
!! ATAATAAATTACATGGGATA+AGG - chr8_4:15656123-15656142 None:intergenic 20.0%
!! TGATAATTTACAAATGAATG+TGG - chr8_4:15654017-15654036 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG + chr8_4:15655035-15655054 Msa1315990:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG - chr8_4:15655506-15655525 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG + chr8_4:15655505-15655524 Msa1315990:intron 20.0%
!! AAATATAGAAGATGAATACT+AGG - chr8_4:15655770-15655789 None:intergenic 20.0%
!! TTCACTATAATTTATCACAA+TGG + chr8_4:15655863-15655882 Msa1315990:intron 20.0%
!! AGAACTTATACAAAAACTAA+AGG + chr8_4:15655959-15655978 Msa1315990:CDS 20.0%
!! GAAACAATTACTGAAATAAT+TGG + chr8_4:15655981-15656000 Msa1315990:CDS 20.0%
!! ATAATAAATTACATGGGATA+AGG - chr8_4:15656123-15656142 None:intergenic 20.0%
! AACTATTGATGAAGATTAGA+CGG + chr8_4:15654365-15654384 Msa1315990:intron 25.0%
! CAATATAGATGGATGTAATT+TGG - chr8_4:15654473-15654492 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG + chr8_4:15654486-15654505 Msa1315990:intron 25.0%
! ATAATATTAACCTTCATCCT+AGG - chr8_4:15654522-15654541 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG + chr8_4:15654672-15654691 Msa1315990:intron 25.0%
!! ATTTGATGATAAATATGCAG+TGG + chr8_4:15654773-15654792 Msa1315990:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG + chr8_4:15654774-15654793 Msa1315990:CDS 25.0%
! ACAATAGTATTTGACATGAA+GGG - chr8_4:15655374-15655393 None:intergenic 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG + chr8_4:15655581-15655600 Msa1315990:intron 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG + chr8_4:15655582-15655601 Msa1315990:intron 25.0%
! ATTCTATTGAAGATTTCATC+AGG + chr8_4:15656064-15656083 Msa1315990:three_prime_UTR 25.0%
! TACGAGATAATTTATTCGAT+CGG - chr8_4:15656323-15656342 None:intergenic 25.0%
! AACTATTGATGAAGATTAGA+CGG + chr8_4:15654365-15654384 Msa1315990:intron 25.0%
! CAATATAGATGGATGTAATT+TGG - chr8_4:15654473-15654492 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG + chr8_4:15654486-15654505 Msa1315990:intron 25.0%
! ATAATATTAACCTTCATCCT+AGG - chr8_4:15654522-15654541 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG + chr8_4:15654672-15654691 Msa1315990:intron 25.0%
!! ATTTGATGATAAATATGCAG+TGG + chr8_4:15654773-15654792 Msa1315990:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG + chr8_4:15654774-15654793 Msa1315990:CDS 25.0%
! ACAATAGTATTTGACATGAA+GGG - chr8_4:15655374-15655393 None:intergenic 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG + chr8_4:15655581-15655600 Msa1315990:intron 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG + chr8_4:15655582-15655601 Msa1315990:intron 25.0%
! ATTCTATTGAAGATTTCATC+AGG + chr8_4:15656064-15656083 Msa1315990:three_prime_UTR 25.0%
! TACGAGATAATTTATTCGAT+CGG - chr8_4:15656323-15656342 None:intergenic 25.0%
GAAGAAGTAAGCAATATAGA+TGG - chr8_4:15654484-15654503 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG + chr8_4:15654485-15654504 Msa1315990:intron 30.0%
TGAAGATTCTTAACAAACTC+AGG - chr8_4:15654635-15654654 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG + chr8_4:15654745-15654764 Msa1315990:intron 30.0%
! TATTTTGTTGGCATCATAGT+GGG + chr8_4:15654746-15654765 Msa1315990:intron 30.0%
CAATTACTTTCACTTGTAAC+AGG + chr8_4:15654932-15654951 Msa1315990:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG + chr8_4:15654984-15655003 Msa1315990:intron 30.0%
TTAATAGGAATTGGTTACAC+TGG + chr8_4:15654993-15655012 Msa1315990:intron 30.0%
TAATAGGAATTGGTTACACT+GGG + chr8_4:15654994-15655013 Msa1315990:intron 30.0%
!!! AATATCGCGTATTTGGTTTT+TGG + chr8_4:15655066-15655085 Msa1315990:intron 30.0%
!!! TGTTTTTTAAAATGATCCCC+AGG + chr8_4:15655133-15655152 Msa1315990:intron 30.0%
GCATCAAGTGAAATAATGTT+GGG - chr8_4:15655277-15655296 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG - chr8_4:15655278-15655297 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG + chr8_4:15655288-15655307 Msa1315990:intron 30.0%
AATAGTATTTGACATGAAGG+GGG - chr8_4:15655372-15655391 None:intergenic 30.0%
CAATAGTATTTGACATGAAG+GGG - chr8_4:15655373-15655392 None:intergenic 30.0%
CACAATAGTATTTGACATGA+AGG - chr8_4:15655375-15655394 None:intergenic 30.0%
ATGTCAAATACTATTGTGCT+TGG + chr8_4:15655377-15655396 Msa1315990:intron 30.0%
AATATCGGACTCTATCTATA+AGG - chr8_4:15655451-15655470 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG - chr8_4:15655592-15655611 None:intergenic 30.0%
GCTTTCTTAAGATGGTATTT+AGG - chr8_4:15655620-15655639 None:intergenic 30.0%
ATCAAATGGCTTTCTTAAGA+TGG - chr8_4:15655628-15655647 None:intergenic 30.0%
!! TAGGAGGTATTATTCATCTT+TGG + chr8_4:15655727-15655746 Msa1315990:intron 30.0%
ACAAATTATGCATACCTTTC+TGG - chr8_4:15655833-15655852 None:intergenic 30.0%
CTGAAATAATTGGGAGTTAA+AGG + chr8_4:15655991-15656010 Msa1315990:CDS 30.0%
TAATTGGGAGTTAAAGGAAT+TGG + chr8_4:15655997-15656016 Msa1315990:exon 30.0%
! TTTCATCAGGATTCATTTTG+TGG + chr8_4:15656077-15656096 Msa1315990:three_prime_UTR 30.0%
AAATTACATGGGATAAGGTT+TGG - chr8_4:15656118-15656137 None:intergenic 30.0%
TCAATCATCTTTAGTGCATA+AGG + chr8_4:15656206-15656225 Msa1315990:three_prime_UTR 30.0%
! TTTAGTGCATAAGGACATTT+TGG + chr8_4:15656215-15656234 Msa1315990:three_prime_UTR 30.0%
GAAGAAGTAAGCAATATAGA+TGG - chr8_4:15654484-15654503 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG + chr8_4:15654485-15654504 Msa1315990:intron 30.0%
TGAAGATTCTTAACAAACTC+AGG - chr8_4:15654635-15654654 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG + chr8_4:15654745-15654764 Msa1315990:intron 30.0%
! TATTTTGTTGGCATCATAGT+GGG + chr8_4:15654746-15654765 Msa1315990:intron 30.0%
CAATTACTTTCACTTGTAAC+AGG + chr8_4:15654932-15654951 Msa1315990:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG + chr8_4:15654984-15655003 Msa1315990:intron 30.0%
TTAATAGGAATTGGTTACAC+TGG + chr8_4:15654993-15655012 Msa1315990:intron 30.0%
TAATAGGAATTGGTTACACT+GGG + chr8_4:15654994-15655013 Msa1315990:intron 30.0%
!!! AATATCGCGTATTTGGTTTT+TGG + chr8_4:15655066-15655085 Msa1315990:intron 30.0%
!!! TGTTTTTTAAAATGATCCCC+AGG + chr8_4:15655133-15655152 Msa1315990:intron 30.0%
GCATCAAGTGAAATAATGTT+GGG - chr8_4:15655277-15655296 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG - chr8_4:15655278-15655297 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG + chr8_4:15655288-15655307 Msa1315990:intron 30.0%
AATAGTATTTGACATGAAGG+GGG - chr8_4:15655372-15655391 None:intergenic 30.0%
CAATAGTATTTGACATGAAG+GGG - chr8_4:15655373-15655392 None:intergenic 30.0%
CACAATAGTATTTGACATGA+AGG - chr8_4:15655375-15655394 None:intergenic 30.0%
ATGTCAAATACTATTGTGCT+TGG + chr8_4:15655377-15655396 Msa1315990:intron 30.0%
AATATCGGACTCTATCTATA+AGG - chr8_4:15655451-15655470 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG - chr8_4:15655592-15655611 None:intergenic 30.0%
GCTTTCTTAAGATGGTATTT+AGG - chr8_4:15655620-15655639 None:intergenic 30.0%
ATCAAATGGCTTTCTTAAGA+TGG - chr8_4:15655628-15655647 None:intergenic 30.0%
!! TAGGAGGTATTATTCATCTT+TGG + chr8_4:15655727-15655746 Msa1315990:intron 30.0%
ACAAATTATGCATACCTTTC+TGG - chr8_4:15655833-15655852 None:intergenic 30.0%
CTGAAATAATTGGGAGTTAA+AGG + chr8_4:15655991-15656010 Msa1315990:CDS 30.0%
TAATTGGGAGTTAAAGGAAT+TGG + chr8_4:15655997-15656016 Msa1315990:exon 30.0%
! TTTCATCAGGATTCATTTTG+TGG + chr8_4:15656077-15656096 Msa1315990:three_prime_UTR 30.0%
AAATTACATGGGATAAGGTT+TGG - chr8_4:15656118-15656137 None:intergenic 30.0%
TCAATCATCTTTAGTGCATA+AGG + chr8_4:15656206-15656225 Msa1315990:three_prime_UTR 30.0%
! TTTAGTGCATAAGGACATTT+TGG + chr8_4:15656215-15656234 Msa1315990:three_prime_UTR 30.0%
ATCAAAGAAGTTGGATGAAG+AGG - chr8_4:15654190-15654209 None:intergenic 35.0%
ATCCAACTTCTTTGATTGCA+AGG + chr8_4:15654194-15654213 Msa1315990:CDS 35.0%
!! CATGATTCTGAGACAACAAA+GGG - chr8_4:15654281-15654300 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG - chr8_4:15654431-15654450 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG - chr8_4:15654464-15654483 None:intergenic 35.0%
CTTGATATTACCTAGGATGA+AGG + chr8_4:15654509-15654528 Msa1315990:intron 35.0%
AAAGATTGCTCGTGATGTTA+TGG + chr8_4:15654562-15654581 Msa1315990:CDS 35.0%
CAAGAAGCTGTATGATTCAT+AGG + chr8_4:15654653-15654672 Msa1315990:intron 35.0%
! TAAATATGCAGTGGGTTCAT+TGG + chr8_4:15654782-15654801 Msa1315990:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG + chr8_4:15654808-15654827 Msa1315990:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG + chr8_4:15654995-15655014 Msa1315990:intron 35.0%
! GCATTGATATACATGGTTGA+TGG + chr8_4:15655295-15655314 Msa1315990:intron 35.0%
GCCTTATACACTATTCAATG+CGG + chr8_4:15655322-15655341 Msa1315990:intron 35.0%
CCTTATACACTATTCAATGC+GGG + chr8_4:15655323-15655342 Msa1315990:intron 35.0%
ATAGTATTTGACATGAAGGG+GGG - chr8_4:15655371-15655390 None:intergenic 35.0%
! TGGTGCATTGACATATAGAT+AGG + chr8_4:15655397-15655416 Msa1315990:intron 35.0%
! GGTGCATTGACATATAGATA+GGG + chr8_4:15655398-15655417 Msa1315990:intron 35.0%
! GTGCATTGACATATAGATAG+GGG + chr8_4:15655399-15655418 Msa1315990:intron 35.0%
GGATGACCTTATAGAAGATA+GGG + chr8_4:15655420-15655439 Msa1315990:intron 35.0%
GATGACCTTATAGAAGATAG+GGG + chr8_4:15655421-15655440 Msa1315990:intron 35.0%
TTCTATATTTCACCTTGCAG+TGG + chr8_4:15655780-15655799 Msa1315990:intron 35.0%
AACATGCTCAATGGAATAAC+AGG + chr8_4:15655934-15655953 Msa1315990:intron 35.0%
ACATGCTCAATGGAATAACA+GGG + chr8_4:15655935-15655954 Msa1315990:intron 35.0%
! AGGAATTGGACATTCTAAGA+TGG + chr8_4:15656011-15656030 Msa1315990:three_prime_UTR 35.0%
! AGGTTTGGTCAAAAAGCTTA+TGG - chr8_4:15656103-15656122 None:intergenic 35.0%
TGGTGCAATAAAACCTATCA+TGG + chr8_4:15656235-15656254 Msa1315990:three_prime_UTR 35.0%
CAATAAAACCTATCATGGCA+TGG + chr8_4:15656240-15656259 Msa1315990:three_prime_UTR 35.0%
TCTCGTACTCCTCAAATTAT+AGG + chr8_4:15656336-15656355 Msa1315990:three_prime_UTR 35.0%
ATCAAAGAAGTTGGATGAAG+AGG - chr8_4:15654190-15654209 None:intergenic 35.0%
ATCCAACTTCTTTGATTGCA+AGG + chr8_4:15654194-15654213 Msa1315990:CDS 35.0%
!! CATGATTCTGAGACAACAAA+GGG - chr8_4:15654281-15654300 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG - chr8_4:15654431-15654450 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG - chr8_4:15654464-15654483 None:intergenic 35.0%
CTTGATATTACCTAGGATGA+AGG + chr8_4:15654509-15654528 Msa1315990:intron 35.0%
AAAGATTGCTCGTGATGTTA+TGG + chr8_4:15654562-15654581 Msa1315990:CDS 35.0%
CAAGAAGCTGTATGATTCAT+AGG + chr8_4:15654653-15654672 Msa1315990:intron 35.0%
! TAAATATGCAGTGGGTTCAT+TGG + chr8_4:15654782-15654801 Msa1315990:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG + chr8_4:15654808-15654827 Msa1315990:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG + chr8_4:15654995-15655014 Msa1315990:intron 35.0%
! GCATTGATATACATGGTTGA+TGG + chr8_4:15655295-15655314 Msa1315990:intron 35.0%
GCCTTATACACTATTCAATG+CGG + chr8_4:15655322-15655341 Msa1315990:intron 35.0%
CCTTATACACTATTCAATGC+GGG + chr8_4:15655323-15655342 Msa1315990:intron 35.0%
ATAGTATTTGACATGAAGGG+GGG - chr8_4:15655371-15655390 None:intergenic 35.0%
! TGGTGCATTGACATATAGAT+AGG + chr8_4:15655397-15655416 Msa1315990:intron 35.0%
! GGTGCATTGACATATAGATA+GGG + chr8_4:15655398-15655417 Msa1315990:intron 35.0%
! GTGCATTGACATATAGATAG+GGG + chr8_4:15655399-15655418 Msa1315990:intron 35.0%
GGATGACCTTATAGAAGATA+GGG + chr8_4:15655420-15655439 Msa1315990:intron 35.0%
GATGACCTTATAGAAGATAG+GGG + chr8_4:15655421-15655440 Msa1315990:intron 35.0%
TTCTATATTTCACCTTGCAG+TGG + chr8_4:15655780-15655799 Msa1315990:intron 35.0%
AACATGCTCAATGGAATAAC+AGG + chr8_4:15655934-15655953 Msa1315990:intron 35.0%
ACATGCTCAATGGAATAACA+GGG + chr8_4:15655935-15655954 Msa1315990:intron 35.0%
! AGGAATTGGACATTCTAAGA+TGG + chr8_4:15656011-15656030 Msa1315990:three_prime_UTR 35.0%
! AGGTTTGGTCAAAAAGCTTA+TGG - chr8_4:15656103-15656122 None:intergenic 35.0%
TGGTGCAATAAAACCTATCA+TGG + chr8_4:15656235-15656254 Msa1315990:three_prime_UTR 35.0%
CAATAAAACCTATCATGGCA+TGG + chr8_4:15656240-15656259 Msa1315990:three_prime_UTR 35.0%
CAGAGAAGAAGAGGAGATTA+AGG - chr8_4:15654160-15654179 None:intergenic 40.0%
CTTAATCTCCTCTTCTTCTC+TGG + chr8_4:15654158-15654177 Msa1315990:CDS 40.0%
AGCCTTGCAATCAAAGAAGT+TGG - chr8_4:15654199-15654218 None:intergenic 40.0%
!! GCATGATTCTGAGACAACAA+AGG - chr8_4:15654282-15654301 None:intergenic 40.0%
TCGACTACACTTACAATGAG+TGG - chr8_4:15654313-15654332 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG - chr8_4:15654449-15654468 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG + chr8_4:15654502-15654521 Msa1315990:intron 40.0%
TGCTCGTGATGTTATGGTAA+TGG + chr8_4:15654568-15654587 Msa1315990:CDS 40.0%
!! GATGTTATGGTAATGGCAAC+AGG + chr8_4:15654575-15654594 Msa1315990:CDS 40.0%
TCAGTTGAGTCAACTTCTGT+TGG - chr8_4:15654608-15654627 None:intergenic 40.0%
GATAGACTTCCTTTGATTCC+TGG + chr8_4:15654960-15654979 Msa1315990:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG - chr8_4:15654972-15654991 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG - chr8_4:15654981-15655000 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG + chr8_4:15654978-15654997 Msa1315990:intron 40.0%
CCAAATACGCGATATTTGCA+GGG - chr8_4:15655062-15655081 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG - chr8_4:15655063-15655082 None:intergenic 40.0%
TATCAGCTTAAATGGACCTG+GGG - chr8_4:15655152-15655171 None:intergenic 40.0%
CTATCAGCTTAAATGGACCT+GGG - chr8_4:15655153-15655172 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG + chr8_4:15655300-15655319 Msa1315990:intron 40.0%
CCCGCATTGAATAGTGTATA+AGG - chr8_4:15655326-15655345 None:intergenic 40.0%
TAGTATTTGACATGAAGGGG+GGG - chr8_4:15655370-15655389 None:intergenic 40.0%
GGGATGACCTTATAGAAGAT+AGG + chr8_4:15655419-15655438 Msa1315990:intron 40.0%
GTCATCCCCTATCTTCTATA+AGG - chr8_4:15655429-15655448 None:intergenic 40.0%
!! ACGTAGTTTTCAAGCCAGAA+AGG + chr8_4:15655816-15655835 Msa1315990:CDS 40.0%
AGAGACACAAGTACTACTCA+GGG - chr8_4:15655913-15655932 None:intergenic 40.0%
TAGAGACACAAGTACTACTC+AGG - chr8_4:15655914-15655933 None:intergenic 40.0%
GTGTCTCTAAACATGCTCAA+TGG + chr8_4:15655925-15655944 Msa1315990:intron 40.0%
! AAAAGTAGGCTCTTAGCCTT+AGG + chr8_4:15656270-15656289 Msa1315990:three_prime_UTR 40.0%
CAGAGAAGAAGAGGAGATTA+AGG - chr8_4:15654160-15654179 None:intergenic 40.0%
CTTAATCTCCTCTTCTTCTC+TGG + chr8_4:15654158-15654177 Msa1315990:CDS 40.0%
AGCCTTGCAATCAAAGAAGT+TGG - chr8_4:15654199-15654218 None:intergenic 40.0%
!! GCATGATTCTGAGACAACAA+AGG - chr8_4:15654282-15654301 None:intergenic 40.0%
TCGACTACACTTACAATGAG+TGG - chr8_4:15654313-15654332 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG - chr8_4:15654449-15654468 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG + chr8_4:15654502-15654521 Msa1315990:intron 40.0%
TGCTCGTGATGTTATGGTAA+TGG + chr8_4:15654568-15654587 Msa1315990:CDS 40.0%
!! GATGTTATGGTAATGGCAAC+AGG + chr8_4:15654575-15654594 Msa1315990:CDS 40.0%
TCAGTTGAGTCAACTTCTGT+TGG - chr8_4:15654608-15654627 None:intergenic 40.0%
GATAGACTTCCTTTGATTCC+TGG + chr8_4:15654960-15654979 Msa1315990:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG - chr8_4:15654972-15654991 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG - chr8_4:15654981-15655000 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG + chr8_4:15654978-15654997 Msa1315990:intron 40.0%
CCAAATACGCGATATTTGCA+GGG - chr8_4:15655062-15655081 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG - chr8_4:15655063-15655082 None:intergenic 40.0%
TATCAGCTTAAATGGACCTG+GGG - chr8_4:15655152-15655171 None:intergenic 40.0%
CTATCAGCTTAAATGGACCT+GGG - chr8_4:15655153-15655172 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG + chr8_4:15655300-15655319 Msa1315990:intron 40.0%
CCCGCATTGAATAGTGTATA+AGG - chr8_4:15655326-15655345 None:intergenic 40.0%
TAGTATTTGACATGAAGGGG+GGG - chr8_4:15655370-15655389 None:intergenic 40.0%
GGGATGACCTTATAGAAGAT+AGG + chr8_4:15655419-15655438 Msa1315990:intron 40.0%
GTCATCCCCTATCTTCTATA+AGG - chr8_4:15655429-15655448 None:intergenic 40.0%
!! ACGTAGTTTTCAAGCCAGAA+AGG + chr8_4:15655816-15655835 Msa1315990:CDS 40.0%
AGAGACACAAGTACTACTCA+GGG - chr8_4:15655913-15655932 None:intergenic 40.0%
TAGAGACACAAGTACTACTC+AGG - chr8_4:15655914-15655933 None:intergenic 40.0%
GTGTCTCTAAACATGCTCAA+TGG + chr8_4:15655925-15655944 Msa1315990:intron 40.0%
! AAAAGTAGGCTCTTAGCCTT+AGG + chr8_4:15656270-15656289 Msa1315990:three_prime_UTR 40.0%
GGATATAGCCAGAGAAGAAG+AGG - chr8_4:15654169-15654188 None:intergenic 45.0%
CTCACACATTGTGGAGAAGA+AGG - chr8_4:15654237-15654256 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG - chr8_4:15654273-15654292 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG + chr8_4:15654830-15654849 Msa1315990:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG + chr8_4:15655059-15655078 Msa1315990:intron 45.0%
CCTATCAGCTTAAATGGACC+TGG - chr8_4:15655154-15655173 None:intergenic 45.0%
CCAGGTCCATTTAAGCTGAT+AGG + chr8_4:15655151-15655170 Msa1315990:intron 45.0%
GGTCCATTTAAGCTGATAGG+TGG + chr8_4:15655154-15655173 Msa1315990:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG - chr8_4:15655160-15655179 None:intergenic 45.0%
ACACTATTCAATGCGGGACT+TGG + chr8_4:15655329-15655348 Msa1315990:intron 45.0%
CTTGTATGCAAACCACTGCA+AGG - chr8_4:15655795-15655814 None:intergenic 45.0%
GAGACACAAGTACTACTCAG+GGG - chr8_4:15655912-15655931 None:intergenic 45.0%
!! GCTAAGAGCCTACTTTTGCT+TGG - chr8_4:15656267-15656286 None:intergenic 45.0%
GGATATAGCCAGAGAAGAAG+AGG - chr8_4:15654169-15654188 None:intergenic 45.0%
CTCACACATTGTGGAGAAGA+AGG - chr8_4:15654237-15654256 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG - chr8_4:15654273-15654292 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG + chr8_4:15654830-15654849 Msa1315990:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG + chr8_4:15655059-15655078 Msa1315990:intron 45.0%
CCTATCAGCTTAAATGGACC+TGG - chr8_4:15655154-15655173 None:intergenic 45.0%
CCAGGTCCATTTAAGCTGAT+AGG + chr8_4:15655151-15655170 Msa1315990:intron 45.0%
GGTCCATTTAAGCTGATAGG+TGG + chr8_4:15655154-15655173 Msa1315990:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG - chr8_4:15655160-15655179 None:intergenic 45.0%
ACACTATTCAATGCGGGACT+TGG + chr8_4:15655329-15655348 Msa1315990:intron 45.0%
CTTGTATGCAAACCACTGCA+AGG - chr8_4:15655795-15655814 None:intergenic 45.0%
GAGACACAAGTACTACTCAG+GGG - chr8_4:15655912-15655931 None:intergenic 45.0%
!! GCTAAGAGCCTACTTTTGCT+TGG - chr8_4:15656267-15656286 None:intergenic 45.0%
GTGGAAAGGCTCACACATTG+TGG - chr8_4:15654246-15654265 None:intergenic 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG - chr8_4:15654260-15654279 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG - chr8_4:15654265-15654284 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG + chr8_4:15654819-15654838 Msa1315990:CDS 50.0%
TGCTTGGACCATGCCATGAT+AGG - chr8_4:15656251-15656270 None:intergenic 50.0%
GGCATGGTCCAAGCAAAAGT+AGG + chr8_4:15656256-15656275 Msa1315990:three_prime_UTR 50.0%
TCGATCGGACTTTAGTCGTC+TGG - chr8_4:15656308-15656327 None:intergenic 50.0%
GTGGAAAGGCTCACACATTG+TGG - chr8_4:15654246-15654265 None:intergenic 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG - chr8_4:15654260-15654279 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG - chr8_4:15654265-15654284 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG + chr8_4:15654819-15654838 Msa1315990:CDS 50.0%
TGCTTGGACCATGCCATGAT+AGG - chr8_4:15656251-15656270 None:intergenic 50.0%
GGCATGGTCCAAGCAAAAGT+AGG + chr8_4:15656256-15656275 Msa1315990:three_prime_UTR 50.0%
TCGATCGGACTTTAGTCGTC+TGG - chr8_4:15656308-15656327 None:intergenic 50.0%
!! GTAGGCTCTTAGCCTTAGGC+TGG + chr8_4:15656274-15656293 Msa1315990:three_prime_UTR 55.0%
!! GTAGGCTCTTAGCCTTAGGC+TGG + chr8_4:15656274-15656293 Msa1315990:three_prime_UTR 55.0%
! CTGGCTCTTGAGCCAGCCTA+AGG - chr8_4:15656289-15656308 None:intergenic 60.0%
! CTGGCTCTTGAGCCAGCCTA+AGG - chr8_4:15656289-15656308 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 15654008 15656356 15654008 ID=Msa1315990;Name=Msa1315990
chr8_4 mRNA 15654008 15656356 15654008 ID=Msa1315990-mRNA-1;Parent=Msa1315990;Name=Msa1315990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=145|0.75|1|1|0.5|0.6|5|346|149
chr8_4 exon 15654008 15654318 15654008 ID=Msa1315990-mRNA-1:exon:5991;Parent=Msa1315990-mRNA-1
chr8_4 exon 15654558 15654661 15654558 ID=Msa1315990-mRNA-1:exon:5992;Parent=Msa1315990-mRNA-1
chr8_4 exon 15654765 15654851 15654765 ID=Msa1315990-mRNA-1:exon:5993;Parent=Msa1315990-mRNA-1
chr8_4 exon 15655800 15655837 15655800 ID=Msa1315990-mRNA-1:exon:5994;Parent=Msa1315990-mRNA-1
chr8_4 exon 15655956 15656356 15655956 ID=Msa1315990-mRNA-1:exon:5995;Parent=Msa1315990-mRNA-1
chr8_4 five_prime_UTR 15654008 15654152 15654008 ID=Msa1315990-mRNA-1:five_prime_utr;Parent=Msa1315990-mRNA-1
chr8_4 CDS 15654153 15654318 15654153 ID=Msa1315990-mRNA-1:cds;Parent=Msa1315990-mRNA-1
chr8_4 CDS 15654558 15654661 15654558 ID=Msa1315990-mRNA-1:cds;Parent=Msa1315990-mRNA-1
chr8_4 CDS 15654765 15654851 15654765 ID=Msa1315990-mRNA-1:cds;Parent=Msa1315990-mRNA-1
chr8_4 CDS 15655800 15655837 15655800 ID=Msa1315990-mRNA-1:cds;Parent=Msa1315990-mRNA-1
chr8_4 CDS 15655956 15656010 15655956 ID=Msa1315990-mRNA-1:cds;Parent=Msa1315990-mRNA-1
chr8_4 three_prime_UTR 15656011 15656356 15656011 ID=Msa1315990-mRNA-1:three_prime_utr;Parent=Msa1315990-mRNA-1
Gene Sequence

>Msa1315990

ATGGCCTTAATCTCCTCTTCTTCTCTGGCTATATCCTCTTCATCCAACTTCTTTGATTGCAAGGCTTCTTTTCAATCATTACCTTCTTCTCCACAATGTGTGAGCCTTTCCACACTTCCATCACTCCCTTTGTTGTCTCAGAATCATGCACTGAAGACCACTCATTATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGACTCAACTGAGCTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATCTCGTGGTTTGCATACAAGAACGTAGTTTTCAAGCCAGAAAGGGAAGAACTTATACAAAAACTAAAGGAAACAATTACTGAAATAATTGGGAGTTAA

Protein sequence

>Msa1315990

MALISSSSLAISSSSNFFDCKASFQSLPSSPQCVSLSTLPSLPLLSQNHALKTTHYRKIARDVMVMATGDAPTEVDSTELPEFVKNLQEAWDKFDDKYAVGSLVVASVFALWSSAGFISWFAYKNVVFKPEREELIQKLKETITEIIGS*