AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371640 MtrunA17_Chr3g0118801 94.009 217 13 0 1 217 1 217 6.61e-147 408
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371640 AT2G21530.1 59.231 130 52 1 82 211 81 209 9.71e-51 164

Find 43 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTCTTGTTATAGATT+TGG 0.263843 3_1:-69869397 Msa0371640:CDS
TCTGGGAGTTATATTACTTT+TGG 0.301923 3_1:-69869309 Msa0371640:intron
AATGCCAGGGGACACTAATT+TGG 0.313943 3_1:-69869084 Msa0371640:intron
CAATATGCTTTGTATCAAAA+TGG 0.318784 3_1:+69868888 None:intergenic
ACTTCTATACCTGTTGCAAC+TGG 0.344018 3_1:+69869614 None:intergenic
CCATTGTCTAGTTCACCTTC+TGG 0.345009 3_1:+69869008 None:intergenic
GCAGAACATGTTTGAGACTT+TGG 0.358567 3_1:+69870296 None:intergenic
GTAGTTACCACTGTATCTTC+TGG 0.366490 3_1:-69869327 Msa0371640:CDS
CTTTGTGTAGCATTAGTTGT+TGG 0.401469 3_1:+69870098 None:intergenic
GCATTGGAGTGTAATAAAAT+TGG 0.429187 3_1:+69870257 None:intergenic
TAATACTCTAGCAACAATAA+TGG 0.429297 3_1:-69870354 Msa0371640:exon
TTGCTAGAGTATTATTAGCT+TGG 0.439298 3_1:+69870363 None:intergenic
ATCACTAAATCAGCTTTCTC+TGG 0.443107 3_1:+69869638 None:intergenic
TTGATGCATGTATAGCTCCT+AGG 0.449624 3_1:+69870132 None:intergenic
TTAGTGATCCCAGTTGCAAC+AGG 0.462387 3_1:-69869623 Msa0371640:intron
TTCAAGGCATATAGGCTTCA+AGG 0.462486 3_1:-69869793 Msa0371640:CDS
GATGGTGATTCAAGGCATAT+AGG 0.467110 3_1:-69869801 Msa0371640:CDS
AGCACCAATGGAACATTCAT+TGG 0.469041 3_1:-69869372 Msa0371640:CDS
GAACATTCATTGGTGACAAA+AGG 0.471831 3_1:-69869362 Msa0371640:CDS
TAGTTACCACTGTATCTTCT+GGG 0.476442 3_1:-69869326 Msa0371640:CDS
CAACTAATGCTACACAAAGA+TGG 0.490326 3_1:-69870094 Msa0371640:CDS
TGATAGGAGATGGTGATTCA+AGG 0.491582 3_1:-69869809 Msa0371640:intron
GAAAGTTACTGAAGTGGCAT+TGG 0.511446 3_1:+69870241 None:intergenic
GTCACCAATGAATGTTCCAT+TGG 0.522297 3_1:+69869368 None:intergenic
GAGAAGGCTGCAGATACAGT+TGG 0.528528 3_1:-69869035 Msa0371640:CDS
GGTGACAAAAGGCTGAAACC+TGG 0.545814 3_1:-69869351 Msa0371640:CDS
AGATGGATTCTTGAACCAGT+TGG 0.550406 3_1:-69870077 Msa0371640:intron
ATAGATTTGGATAGCACCAA+TGG 0.560750 3_1:-69869384 Msa0371640:CDS
GGCTTCAAGGTTGAGAGACC+AGG 0.565164 3_1:-69869780 Msa0371640:CDS
GATACAGTGGTAACTACTCC+AGG 0.567838 3_1:+69869333 None:intergenic
TGTTATACATCCCAAATCAC+AGG 0.568456 3_1:-69870165 Msa0371640:CDS
CTTCTATACCTGTTGCAACT+GGG 0.577256 3_1:+69869615 None:intergenic
CAGGTGTGCATGCACGCATT+CGG 0.581165 3_1:-69869431 Msa0371640:CDS
TGTGTCGAAAATAGAAGAGA+AGG 0.593642 3_1:-69869051 Msa0371640:CDS
TGTAGCATTAGTTGTTGGAG+TGG 0.594055 3_1:+69870103 None:intergenic
ACTCTAGCAACAATAATGGA+AGG 0.614859 3_1:-69870350 Msa0371640:exon
ATCTAGAATGAAGTCACTGT+AGG 0.636581 3_1:-69869668 Msa0371640:intron
TGAACTGAAAGTTACTGAAG+TGG 0.650521 3_1:+69870235 None:intergenic
GATACAGTTGGAGAACCAGA+AGG 0.670779 3_1:-69869023 Msa0371640:CDS
GAAGTAATTTCATAAGCACC+TGG 0.674584 3_1:+69869762 None:intergenic
TTGGGATGTATAACACGACC+TGG 0.687791 3_1:+69870173 None:intergenic
ATAACTCCCAGAAGATACAG+TGG 0.690459 3_1:+69869320 None:intergenic
CCAGAAGGTGAACTAGACAA+TGG 0.701962 3_1:-69869008 Msa0371640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTATTACTACAAAT+AGG - chr3_1:69869289-69869308 Msa0371640:intron 10.0%
!! ATATTATTATTACTACAAAT+AGG - chr3_1:69869289-69869308 Msa0371640:intron 10.0%
!!! GATTTTAACAATTTTTCAAT+TGG + chr3_1:69869197-69869216 None:intergenic 15.0%
!! TAGTAATAATAATATCATGA+AGG + chr3_1:69869284-69869303 None:intergenic 15.0%
!! TTTAAGTATTTGTTTCAATA+TGG - chr3_1:69869332-69869351 Msa0371640:CDS 15.0%
!!! GATTTTAACAATTTTTCAAT+TGG + chr3_1:69869197-69869216 None:intergenic 15.0%
!! TAGTAATAATAATATCATGA+AGG + chr3_1:69869284-69869303 None:intergenic 15.0%
!! TTTAAGTATTTGTTTCAATA+TGG - chr3_1:69869332-69869351 Msa0371640:CDS 15.0%
!! TGAAACAAATACTTAAAAAG+TGG + chr3_1:69869329-69869348 None:intergenic 20.0%
!! TTTGTAACTGTAAGAAAAAT+AGG + chr3_1:69869656-69869675 None:intergenic 20.0%
!! TAACATAATTATTCAACAGA+AGG + chr3_1:69869967-69869986 None:intergenic 20.0%
!!! TATCATTTTGAAATTCTCTT+AGG + chr3_1:69870057-69870076 None:intergenic 20.0%
!! TGAAACAAATACTTAAAAAG+TGG + chr3_1:69869329-69869348 None:intergenic 20.0%
!! TTTGTAACTGTAAGAAAAAT+AGG + chr3_1:69869656-69869675 None:intergenic 20.0%
!! TAACATAATTATTCAACAGA+AGG + chr3_1:69869967-69869986 None:intergenic 20.0%
!!! TATCATTTTGAAATTCTCTT+AGG + chr3_1:69870057-69870076 None:intergenic 20.0%
! TAATACTCTAGCAACAATAA+TGG - chr3_1:69868859-69868878 Msa0371640:three_prime_UTR 25.0%
! CTCAATCAAGATAAGAAAAA+TGG + chr3_1:69869243-69869262 None:intergenic 25.0%
! CTTAAAAAGTGGTTAATTGA+GGG + chr3_1:69869318-69869337 None:intergenic 25.0%
! ACTTAAAAAGTGGTTAATTG+AGG + chr3_1:69869319-69869338 None:intergenic 25.0%
! CAATATGGTCAATATTAACA+AGG - chr3_1:69869347-69869366 Msa0371640:CDS 25.0%
!!! ACAAAACCAATCATTTTGAT+AGG - chr3_1:69869388-69869407 Msa0371640:CDS 25.0%
! AGCATAGTACATTAAGATTA+AGG + chr3_1:69869702-69869721 None:intergenic 25.0%
! CAAATTATATTGTGATTCTC+TGG + chr3_1:69869736-69869755 None:intergenic 25.0%
!! CAATCTTCTTGTTATAGATT+TGG - chr3_1:69869816-69869835 Msa0371640:intron 25.0%
! TTGAAATTCTCTTAGGAATA+TGG + chr3_1:69870050-69870069 None:intergenic 25.0%
! ATAATAGCAGAGGTTAAATA+TGG + chr3_1:69870108-69870127 None:intergenic 25.0%
! CAATATGCTTTGTATCAAAA+TGG + chr3_1:69870328-69870347 None:intergenic 25.0%
! TAATACTCTAGCAACAATAA+TGG - chr3_1:69868859-69868878 Msa0371640:three_prime_UTR 25.0%
! CTCAATCAAGATAAGAAAAA+TGG + chr3_1:69869243-69869262 None:intergenic 25.0%
! CTTAAAAAGTGGTTAATTGA+GGG + chr3_1:69869318-69869337 None:intergenic 25.0%
! ACTTAAAAAGTGGTTAATTG+AGG + chr3_1:69869319-69869338 None:intergenic 25.0%
! CAATATGGTCAATATTAACA+AGG - chr3_1:69869347-69869366 Msa0371640:CDS 25.0%
!!! ACAAAACCAATCATTTTGAT+AGG - chr3_1:69869388-69869407 Msa0371640:CDS 25.0%
! AGCATAGTACATTAAGATTA+AGG + chr3_1:69869702-69869721 None:intergenic 25.0%
! CAAATTATATTGTGATTCTC+TGG + chr3_1:69869736-69869755 None:intergenic 25.0%
!! CAATCTTCTTGTTATAGATT+TGG - chr3_1:69869816-69869835 Msa0371640:intron 25.0%
! TTGAAATTCTCTTAGGAATA+TGG + chr3_1:69870050-69870069 None:intergenic 25.0%
! ATAATAGCAGAGGTTAAATA+TGG + chr3_1:69870108-69870127 None:intergenic 25.0%
! CAATATGCTTTGTATCAAAA+TGG + chr3_1:69870328-69870347 None:intergenic 25.0%
! TTGCTAGAGTATTATTAGCT+TGG + chr3_1:69868853-69868872 None:intergenic 30.0%
!!! GAGACTTTGGAATTTTTGTT+AGG + chr3_1:69868907-69868926 None:intergenic 30.0%
GCATTGGAGTGTAATAAAAT+TGG + chr3_1:69868959-69868978 None:intergenic 30.0%
!!! TTCACTTTTTCCTGTGATTT+GGG + chr3_1:69869061-69869080 None:intergenic 30.0%
!! AACAAGGTGTTTTATCACTT+TGG - chr3_1:69869363-69869382 Msa0371640:CDS 30.0%
! ATCAGAATCAATGATTTGTG+TGG - chr3_1:69869484-69869503 Msa0371640:intron 30.0%
! TGTTTTGTATTTACAGTGTC+AGG - chr3_1:69869763-69869782 Msa0371640:CDS 30.0%
! TCTGGGAGTTATATTACTTT+TGG - chr3_1:69869904-69869923 Msa0371640:intron 30.0%
TATATAACCCTGTTTGTAGA+AGG - chr3_1:69870011-69870030 Msa0371640:intron 30.0%
TTAAGATCCTTCTACAAACA+GGG + chr3_1:69870021-69870040 None:intergenic 30.0%
! TTTAAGATCCTTCTACAAAC+AGG + chr3_1:69870022-69870041 None:intergenic 30.0%
CAGAGGTTAAATATGGAATA+GGG + chr3_1:69870101-69870120 None:intergenic 30.0%
! TTGCTAGAGTATTATTAGCT+TGG + chr3_1:69868853-69868872 None:intergenic 30.0%
!!! GAGACTTTGGAATTTTTGTT+AGG + chr3_1:69868907-69868926 None:intergenic 30.0%
GCATTGGAGTGTAATAAAAT+TGG + chr3_1:69868959-69868978 None:intergenic 30.0%
!!! TTCACTTTTTCCTGTGATTT+GGG + chr3_1:69869061-69869080 None:intergenic 30.0%
!! AACAAGGTGTTTTATCACTT+TGG - chr3_1:69869363-69869382 Msa0371640:CDS 30.0%
! ATCAGAATCAATGATTTGTG+TGG - chr3_1:69869484-69869503 Msa0371640:intron 30.0%
! TGTTTTGTATTTACAGTGTC+AGG - chr3_1:69869763-69869782 Msa0371640:CDS 30.0%
! TCTGGGAGTTATATTACTTT+TGG - chr3_1:69869904-69869923 Msa0371640:intron 30.0%
TATATAACCCTGTTTGTAGA+AGG - chr3_1:69870011-69870030 Msa0371640:intron 30.0%
TTAAGATCCTTCTACAAACA+GGG + chr3_1:69870021-69870040 None:intergenic 30.0%
! TTTAAGATCCTTCTACAAAC+AGG + chr3_1:69870022-69870041 None:intergenic 30.0%
CAGAGGTTAAATATGGAATA+GGG + chr3_1:69870101-69870120 None:intergenic 30.0%
! ACTCTAGCAACAATAATGGA+AGG - chr3_1:69868863-69868882 Msa0371640:three_prime_UTR 35.0%
TGAACTGAAAGTTACTGAAG+TGG + chr3_1:69868981-69869000 None:intergenic 35.0%
TGTTATACATCCCAAATCAC+AGG - chr3_1:69869048-69869067 Msa0371640:CDS 35.0%
!!! GTTCACTTTTTCCTGTGATT+TGG + chr3_1:69869062-69869081 None:intergenic 35.0%
CTTTGTGTAGCATTAGTTGT+TGG + chr3_1:69869118-69869137 None:intergenic 35.0%
CAACTAATGCTACACAAAGA+TGG - chr3_1:69869119-69869138 Msa0371640:intron 35.0%
! AGAAAGTGTAACTAACCAAC+TGG + chr3_1:69869154-69869173 None:intergenic 35.0%
CCATCTCCTATCAAAATGAT+TGG + chr3_1:69869397-69869416 None:intergenic 35.0%
!! CCAATCATTTTGATAGGAGA+TGG - chr3_1:69869394-69869413 Msa0371640:CDS 35.0%
GAAGTAATTTCATAAGCACC+TGG + chr3_1:69869454-69869473 None:intergenic 35.0%
! ATCTAGAATGAAGTCACTGT+AGG - chr3_1:69869545-69869564 Msa0371640:intron 35.0%
ATCACTAAATCAGCTTTCTC+TGG + chr3_1:69869578-69869597 None:intergenic 35.0%
GATTAAGGAGCTTATTTCAG+TGG + chr3_1:69869687-69869706 None:intergenic 35.0%
ATAGATTTGGATAGCACCAA+TGG - chr3_1:69869829-69869848 Msa0371640:intron 35.0%
! GAACATTCATTGGTGACAAA+AGG - chr3_1:69869851-69869870 Msa0371640:intron 35.0%
TAGTTACCACTGTATCTTCT+GGG - chr3_1:69869887-69869906 Msa0371640:intron 35.0%
GCAGAGGTTAAATATGGAAT+AGG + chr3_1:69870102-69870121 None:intergenic 35.0%
! TCTCTTCTATTTTCGACACA+CGG + chr3_1:69870162-69870181 None:intergenic 35.0%
TGTGTCGAAAATAGAAGAGA+AGG - chr3_1:69870162-69870181 Msa0371640:CDS 35.0%
! ACTCTAGCAACAATAATGGA+AGG - chr3_1:69868863-69868882 Msa0371640:three_prime_UTR 35.0%
TGAACTGAAAGTTACTGAAG+TGG + chr3_1:69868981-69869000 None:intergenic 35.0%
TGTTATACATCCCAAATCAC+AGG - chr3_1:69869048-69869067 Msa0371640:CDS 35.0%
!!! GTTCACTTTTTCCTGTGATT+TGG + chr3_1:69869062-69869081 None:intergenic 35.0%
CTTTGTGTAGCATTAGTTGT+TGG + chr3_1:69869118-69869137 None:intergenic 35.0%
CAACTAATGCTACACAAAGA+TGG - chr3_1:69869119-69869138 Msa0371640:intron 35.0%
! AGAAAGTGTAACTAACCAAC+TGG + chr3_1:69869154-69869173 None:intergenic 35.0%
CCATCTCCTATCAAAATGAT+TGG + chr3_1:69869397-69869416 None:intergenic 35.0%
!! CCAATCATTTTGATAGGAGA+TGG - chr3_1:69869394-69869413 Msa0371640:CDS 35.0%
GAAGTAATTTCATAAGCACC+TGG + chr3_1:69869454-69869473 None:intergenic 35.0%
! ATCTAGAATGAAGTCACTGT+AGG - chr3_1:69869545-69869564 Msa0371640:intron 35.0%
ATCACTAAATCAGCTTTCTC+TGG + chr3_1:69869578-69869597 None:intergenic 35.0%
GATTAAGGAGCTTATTTCAG+TGG + chr3_1:69869687-69869706 None:intergenic 35.0%
ATAGATTTGGATAGCACCAA+TGG - chr3_1:69869829-69869848 Msa0371640:intron 35.0%
! GAACATTCATTGGTGACAAA+AGG - chr3_1:69869851-69869870 Msa0371640:intron 35.0%
TAGTTACCACTGTATCTTCT+GGG - chr3_1:69869887-69869906 Msa0371640:intron 35.0%
GCAGAGGTTAAATATGGAAT+AGG + chr3_1:69870102-69870121 None:intergenic 35.0%
! TCTCTTCTATTTTCGACACA+CGG + chr3_1:69870162-69870181 None:intergenic 35.0%
TGTGTCGAAAATAGAAGAGA+AGG - chr3_1:69870162-69870181 Msa0371640:CDS 35.0%
! GCAGAACATGTTTGAGACTT+TGG + chr3_1:69868920-69868939 None:intergenic 40.0%
GAAAGTTACTGAAGTGGCAT+TGG + chr3_1:69868975-69868994 None:intergenic 40.0%
!!! TGCTTTCTTTTTCAGCAACC+AGG - chr3_1:69869022-69869041 Msa0371640:CDS 40.0%
TCACAGGAAAAAGTGAACCT+AGG - chr3_1:69869064-69869083 Msa0371640:CDS 40.0%
TTGATGCATGTATAGCTCCT+AGG + chr3_1:69869084-69869103 None:intergenic 40.0%
TGTAGCATTAGTTGTTGGAG+TGG + chr3_1:69869113-69869132 None:intergenic 40.0%
! AGATGGATTCTTGAACCAGT+TGG - chr3_1:69869136-69869155 Msa0371640:intron 40.0%
TGATAGGAGATGGTGATTCA+AGG - chr3_1:69869404-69869423 Msa0371640:CDS 40.0%
GATGGTGATTCAAGGCATAT+AGG - chr3_1:69869412-69869431 Msa0371640:CDS 40.0%
TTCAAGGCATATAGGCTTCA+AGG - chr3_1:69869420-69869439 Msa0371640:CDS 40.0%
CTTCTATACCTGTTGCAACT+GGG + chr3_1:69869601-69869620 None:intergenic 40.0%
ACTTCTATACCTGTTGCAAC+TGG + chr3_1:69869602-69869621 None:intergenic 40.0%
AGCACCAATGGAACATTCAT+TGG - chr3_1:69869841-69869860 Msa0371640:intron 40.0%
GTCACCAATGAATGTTCCAT+TGG + chr3_1:69869848-69869867 None:intergenic 40.0%
GTAGTTACCACTGTATCTTC+TGG - chr3_1:69869886-69869905 Msa0371640:intron 40.0%
ATAACTCCCAGAAGATACAG+TGG + chr3_1:69869896-69869915 None:intergenic 40.0%
CTCTGCTATTATGAATGCCA+GGG - chr3_1:69870116-69870135 Msa0371640:CDS 40.0%
TCTGCTATTATGAATGCCAG+GGG - chr3_1:69870117-69870136 Msa0371640:CDS 40.0%
! GCAGAACATGTTTGAGACTT+TGG + chr3_1:69868920-69868939 None:intergenic 40.0%
GAAAGTTACTGAAGTGGCAT+TGG + chr3_1:69868975-69868994 None:intergenic 40.0%
!!! TGCTTTCTTTTTCAGCAACC+AGG - chr3_1:69869022-69869041 Msa0371640:CDS 40.0%
TCACAGGAAAAAGTGAACCT+AGG - chr3_1:69869064-69869083 Msa0371640:CDS 40.0%
TTGATGCATGTATAGCTCCT+AGG + chr3_1:69869084-69869103 None:intergenic 40.0%
TGTAGCATTAGTTGTTGGAG+TGG + chr3_1:69869113-69869132 None:intergenic 40.0%
! AGATGGATTCTTGAACCAGT+TGG - chr3_1:69869136-69869155 Msa0371640:intron 40.0%
TGATAGGAGATGGTGATTCA+AGG - chr3_1:69869404-69869423 Msa0371640:CDS 40.0%
GATGGTGATTCAAGGCATAT+AGG - chr3_1:69869412-69869431 Msa0371640:CDS 40.0%
TTCAAGGCATATAGGCTTCA+AGG - chr3_1:69869420-69869439 Msa0371640:CDS 40.0%
CTTCTATACCTGTTGCAACT+GGG + chr3_1:69869601-69869620 None:intergenic 40.0%
ACTTCTATACCTGTTGCAAC+TGG + chr3_1:69869602-69869621 None:intergenic 40.0%
AGCACCAATGGAACATTCAT+TGG - chr3_1:69869841-69869860 Msa0371640:intron 40.0%
GTCACCAATGAATGTTCCAT+TGG + chr3_1:69869848-69869867 None:intergenic 40.0%
GTAGTTACCACTGTATCTTC+TGG - chr3_1:69869886-69869905 Msa0371640:intron 40.0%
ATAACTCCCAGAAGATACAG+TGG + chr3_1:69869896-69869915 None:intergenic 40.0%
CTCTGCTATTATGAATGCCA+GGG - chr3_1:69870116-69870135 Msa0371640:CDS 40.0%
TCTGCTATTATGAATGCCAG+GGG - chr3_1:69870117-69870136 Msa0371640:CDS 40.0%
TTGGGATGTATAACACGACC+TGG + chr3_1:69869043-69869062 None:intergenic 45.0%
TTAGTGATCCCAGTTGCAAC+AGG - chr3_1:69869590-69869609 Msa0371640:intron 45.0%
GATACAGTGGTAACTACTCC+AGG + chr3_1:69869883-69869902 None:intergenic 45.0%
CCTGGCATTCATAATAGCAG+AGG + chr3_1:69870118-69870137 None:intergenic 45.0%
CCTCTGCTATTATGAATGCC+AGG - chr3_1:69870115-69870134 Msa0371640:CDS 45.0%
AATGCCAGGGGACACTAATT+TGG - chr3_1:69870129-69870148 Msa0371640:CDS 45.0%
ATAGCCAAATTAGTGTCCCC+TGG + chr3_1:69870136-69870155 None:intergenic 45.0%
GATACAGTTGGAGAACCAGA+AGG - chr3_1:69870190-69870209 Msa0371640:CDS 45.0%
! CCATTGTCTAGTTCACCTTC+TGG + chr3_1:69870208-69870227 None:intergenic 45.0%
CCAGAAGGTGAACTAGACAA+TGG - chr3_1:69870205-69870224 Msa0371640:CDS 45.0%
TTGGGATGTATAACACGACC+TGG + chr3_1:69869043-69869062 None:intergenic 45.0%
TTAGTGATCCCAGTTGCAAC+AGG - chr3_1:69869590-69869609 Msa0371640:intron 45.0%
GATACAGTGGTAACTACTCC+AGG + chr3_1:69869883-69869902 None:intergenic 45.0%
CCTGGCATTCATAATAGCAG+AGG + chr3_1:69870118-69870137 None:intergenic 45.0%
CCTCTGCTATTATGAATGCC+AGG - chr3_1:69870115-69870134 Msa0371640:CDS 45.0%
AATGCCAGGGGACACTAATT+TGG - chr3_1:69870129-69870148 Msa0371640:CDS 45.0%
ATAGCCAAATTAGTGTCCCC+TGG + chr3_1:69870136-69870155 None:intergenic 45.0%
GATACAGTTGGAGAACCAGA+AGG - chr3_1:69870190-69870209 Msa0371640:CDS 45.0%
! CCATTGTCTAGTTCACCTTC+TGG + chr3_1:69870208-69870227 None:intergenic 45.0%
CCAGAAGGTGAACTAGACAA+TGG - chr3_1:69870205-69870224 Msa0371640:CDS 45.0%
GGTGACAAAAGGCTGAAACC+TGG - chr3_1:69869862-69869881 Msa0371640:intron 50.0%
GAGAAGGCTGCAGATACAGT+TGG - chr3_1:69870178-69870197 Msa0371640:CDS 50.0%
GGTGACAAAAGGCTGAAACC+TGG - chr3_1:69869862-69869881 Msa0371640:intron 50.0%
GAGAAGGCTGCAGATACAGT+TGG - chr3_1:69870178-69870197 Msa0371640:CDS 50.0%
GGCTTCAAGGTTGAGAGACC+AGG - chr3_1:69869433-69869452 Msa0371640:CDS 55.0%
CAGGTGTGCATGCACGCATT+CGG - chr3_1:69869782-69869801 Msa0371640:CDS 55.0%
GGCTTCAAGGTTGAGAGACC+AGG - chr3_1:69869433-69869452 Msa0371640:CDS 55.0%
CAGGTGTGCATGCACGCATT+CGG - chr3_1:69869782-69869801 Msa0371640:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69868837 69870398 69868837 ID=Msa0371640;Name=Msa0371640
chr3_1 mRNA 69868837 69870398 69868837 ID=Msa0371640-mRNA-1;Parent=Msa0371640;Name=Msa0371640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=41|1|1|1|1|1|5|128|228
chr3_1 exon 69868837 69869098 69868837 ID=Msa0371640-mRNA-1:exon:14988;Parent=Msa0371640-mRNA-1
chr3_1 exon 69869310 69869456 69869310 ID=Msa0371640-mRNA-1:exon:14987;Parent=Msa0371640-mRNA-1
chr3_1 exon 69869624 69869684 69869624 ID=Msa0371640-mRNA-1:exon:14986;Parent=Msa0371640-mRNA-1
chr3_1 exon 69869761 69869825 69869761 ID=Msa0371640-mRNA-1:exon:14985;Parent=Msa0371640-mRNA-1
chr3_1 exon 69870078 69870398 69870078 ID=Msa0371640-mRNA-1:exon:14984;Parent=Msa0371640-mRNA-1
chr3_1 five_prime_UTR 69870358 69870398 69870358 ID=Msa0371640-mRNA-1:five_prime_utr;Parent=Msa0371640-mRNA-1
chr3_1 CDS 69870078 69870357 69870078 ID=Msa0371640-mRNA-1:cds;Parent=Msa0371640-mRNA-1
chr3_1 CDS 69869761 69869825 69869761 ID=Msa0371640-mRNA-1:cds;Parent=Msa0371640-mRNA-1
chr3_1 CDS 69869624 69869684 69869624 ID=Msa0371640-mRNA-1:cds;Parent=Msa0371640-mRNA-1
chr3_1 CDS 69869310 69869456 69869310 ID=Msa0371640-mRNA-1:cds;Parent=Msa0371640-mRNA-1
chr3_1 CDS 69868965 69869098 69868965 ID=Msa0371640-mRNA-1:cds;Parent=Msa0371640-mRNA-1
chr3_1 three_prime_UTR 69868837 69868964 69868837 ID=Msa0371640-mRNA-1:three_prime_utr;Parent=Msa0371640-mRNA-1
Gene Sequence

>Msa0371640

ATGGAAGGCATTGTAAAATCTCTCTACCTAACAAAAATTCCAAAGTCTCAAACATGTTCTGCTTCTCTGTTGAACTCACCAATTTTATTACACTCCAATGCCACTTCAGTAACTTTCAGTTCAGCAACAAATCATCTGCACAAGTGCTTTCTTTTTCAGCAACCAGGTCGTGTTATACATCCCAAATCACAGGAAAAAGTGAACCTAGGAGCTATACATGCATCAAAAGCTACCACTCCAACAACTAATGCTACACAAAGATGGATTCTTGAACCAGTTGGAGATGGTGATTCAAGGCATATAGGCTTCAAGGTTGAGAGACCAGGTGCTTATGAAATTACTTCTAATGAAGTCACTGTAGGACGTGTTCCAGAGAAAGCTGATTTAGTGATCCCAGTTGCAACAGTGTCAGGTGTGCATGCACGCATTCGGATGAAACAAGACAATCTTCTTGTTATAGATTTGGATAGCACCAATGGAACATTCATTGGTGACAAAAGGCTGAAACCTGGAGTAGTTACCACTGTATCTTCTGGGAGTTATATTACTTTTGGGGACACTAATTTGGCTATGTTCCGTGTGTCGAAAATAGAAGAGAAGGCTGCAGATACAGTTGGAGAACCAGAAGGTGAACTAGACAATGGTGACAAATCTGATAGTACTGAAACAAGTTCAACTTCTAGTTGA

Protein sequence

>Msa0371640

MEGIVKSLYLTKIPKSQTCSASLLNSPILLHSNATSVTFSSATNHLHKCFLFQQPGRVIHPKSQEKVNLGAIHASKATTPTTNATQRWILEPVGDGDSRHIGFKVERPGAYEITSNEVTVGRVPEKADLVIPVATVSGVHARIRMKQDNLLVIDLDSTNGTFIGDKRLKPGVVTTVSSGSYITFGDTNLAMFRVSKIEEKAADTVGEPEGELDNGDKSDSTETSSTSS*