AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0420890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420890 MtrunA17_Chr3g0120661 95.433 635 18 1 1 635 1 624 0.0 1258
Msa0420890 MtrunA17_Chr2g0291461 57.532 624 240 6 1 619 3 606 0.0 692
Msa0420890 MtrunA17_Chr3g0126111 42.021 564 298 12 66 619 57 601 2.18e-143 429
Msa0420890 MtrunA17_Chr3g0142501 39.227 543 275 17 88 608 15 524 1.58e-100 316
Msa0420890 MtrunA17_Chr4g0072811 74.000 200 38 3 434 630 8 196 1.28e-96 294
Msa0420890 MtrunA17_Chr8g0388051 39.960 503 257 17 116 607 28 496 5.88e-93 300
Msa0420890 MtrunA17_Chr8g0372031 38.561 542 281 17 80 604 20 526 7.23e-92 294
Msa0420890 MtrunA17_Chr3g0119821 38.306 496 254 18 116 599 35 490 9.13e-91 290
Msa0420890 MtrunA17_Chr3g0119371 38.370 503 263 16 110 599 34 502 6.05e-90 288
Msa0420890 MtrunA17_Chr5g0439311 37.044 521 273 19 116 618 31 514 2.46e-89 287
Msa0420890 MtrunA17_Chr4g0038131 37.897 504 269 15 116 608 28 498 4.84e-89 290
Msa0420890 MtrunA17_Chr5g0397201 37.223 497 258 15 116 602 40 492 1.03e-84 274
Msa0420890 MtrunA17_Chr3g0080171 39.638 497 243 20 116 599 25 477 1.46e-84 273
Msa0420890 MtrunA17_Chr3g0145261 37.751 498 256 18 116 599 24 481 1.38e-83 271
Msa0420890 MtrunA17_Chr5g0444721 35.189 557 265 17 116 602 34 564 9.85e-83 271
Msa0420890 MtrunA17_Chr1g0195271 38.735 506 253 17 116 607 39 501 2.58e-82 268
Msa0420890 MtrunA17_Chr3g0086311 37.400 500 254 18 116 604 30 481 2.57e-81 265
Msa0420890 MtrunA17_Chr8g0391391 37.550 498 257 18 116 599 30 487 1.80e-80 263
Msa0420890 MtrunA17_Chr1g0164201 36.433 527 271 18 87 602 8 481 8.12e-78 255
Msa0420890 MtrunA17_Chr4g0018301 36.437 494 260 17 116 599 45 494 7.44e-76 251
Msa0420890 MtrunA17_Chr4g0018361 34.659 528 279 18 98 604 9 491 1.40e-73 244
Msa0420890 MtrunA17_Chr5g0397181 34.910 444 231 15 179 609 1 399 1.98e-63 215
Msa0420890 MtrunA17_Chr3g0136381 34.974 386 202 15 116 491 30 376 8.46e-56 195
Msa0420890 MtrunA17_Chr4g0018351 45.752 153 69 4 116 268 30 168 9.99e-36 134
Msa0420890 MtrunA17_Chr4g0018341 34.266 286 145 12 324 599 21 273 3.16e-33 129
Msa0420890 MtrunA17_Chr1g0164181 45.050 202 92 7 162 358 5 192 3.91e-30 121
Msa0420890 MtrunA17_Chr1g0164181 35.260 173 91 6 432 599 172 328 4.88e-20 91.7
Msa0420890 MtrunA17_Chr7g0269571 34.066 182 113 3 429 607 37 214 1.70e-26 108
Msa0420890 MtrunA17_Chr4g0022271 34.302 172 82 6 423 583 1 152 2.09e-20 89.0
Msa0420890 MtrunA17_Chr3g0136371 47.778 90 40 3 503 587 1 88 3.82e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0420890 AT1G65610.1 59.561 638 240 6 1 635 1 623 0.0 761
Msa0420890 AT5G49720.1 57.097 627 239 10 1 619 1 605 0.0 669
Msa0420890 AT4G24260.1 54.531 629 257 10 1 622 1 607 0.0 610
Msa0420890 AT4G24260.3 53.924 497 213 7 1 491 1 487 8.26e-157 460
Msa0420890 AT4G24260.2 52.036 442 196 7 1 436 1 432 5.43e-132 395
Msa0420890 AT1G75680.1 42.443 483 237 13 117 593 58 505 1.85e-98 311
Msa0420890 AT1G19940.2 40.755 503 252 14 106 597 33 500 7.91e-98 309
Msa0420890 AT1G19940.1 40.755 503 252 14 106 597 33 500 7.91e-98 309
Msa0420890 AT1G02800.1 39.882 509 255 17 107 605 34 501 3.14e-90 289
Msa0420890 AT4G11050.2 37.430 537 279 19 116 635 26 522 5.48e-90 290
Msa0420890 AT4G02290.1 40.726 496 241 17 116 599 52 506 2.85e-89 287
Msa0420890 AT4G11050.3 37.430 537 279 19 116 635 26 522 3.14e-89 290
Msa0420890 AT4G11050.1 37.430 537 279 19 116 635 26 522 3.51e-89 290
Msa0420890 AT4G09740.1 35.729 501 267 15 116 606 23 478 3.80e-87 280
Msa0420890 AT2G44570.1 37.094 523 280 18 92 603 8 492 4.14e-86 278
Msa0420890 AT2G32990.1 38.431 497 259 17 116 599 39 501 7.11e-86 278
Msa0420890 AT4G23560.1 37.924 501 256 16 117 607 24 479 1.69e-85 276
Msa0420890 AT1G64390.1 38.400 500 263 17 116 604 25 490 3.34e-85 279
Msa0420890 AT4G39000.1 38.690 504 258 18 114 604 23 488 5.32e-84 272
Msa0420890 AT1G71380.1 39.437 497 243 20 116 599 24 475 1.24e-83 271
Msa0420890 AT1G22880.1 39.265 517 248 21 98 599 10 475 2.03e-82 268
Msa0420890 AT1G70710.1 37.137 517 270 18 96 599 8 482 3.60e-82 268
Msa0420890 AT3G43860.2 38.048 502 248 18 116 604 34 485 1.49e-81 266
Msa0420890 AT3G43860.1 38.048 502 248 18 116 604 34 485 1.49e-81 266
Msa0420890 AT4G39010.1 35.700 507 273 19 116 608 29 496 1.40e-80 263
Msa0420890 AT2G44550.1 35.048 525 279 16 87 599 12 486 3.07e-80 262
Msa0420890 AT1G23210.1 37.349 498 255 20 116 599 28 482 4.32e-80 262
Msa0420890 AT4G38990.2 34.848 528 279 19 88 599 8 486 1.78e-79 260
Msa0420890 AT2G44540.1 35.551 526 279 18 87 599 12 490 1.05e-78 258
Msa0420890 AT1G48930.1 38.211 492 261 14 116 597 30 488 1.72e-77 259
Msa0420890 AT2G44560.1 36.145 498 267 16 116 602 33 490 3.45e-72 241
Msa0420890 AT1G19940.3 39.295 397 207 12 106 491 33 406 5.67e-68 228
Msa0420890 AT4G02290.2 38.337 433 216 16 179 599 1 394 2.05e-65 221
Msa0420890 AT1G22880.2 37.385 436 213 19 179 599 1 391 7.48e-62 211
Msa0420890 AT2G44570.2 34.906 424 240 14 92 507 8 403 2.86e-55 193
Msa0420890 AT4G39010.2 34.715 386 217 15 116 492 29 388 5.15e-55 192
Msa0420890 AT1G22880.3 41.194 335 152 15 98 423 10 308 7.42e-46 166
Msa0420890 AT4G38990.1 33.158 380 194 14 92 464 4 330 3.90e-44 161

Find 160 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTCTTCTTCTTCATATT+TGG 0.162977 3_2:+69666719 None:intergenic
AAGACCAAGTATGTGGATTT+TGG 0.214969 3_2:-69666704 Msa0420890:CDS
CATGAAATTCCATTGCTCTT+TGG 0.243720 3_2:+69663727 None:intergenic
ATGCCAGAGAACTCATTAAA+TGG 0.258995 3_2:-69663522 Msa0420890:CDS
TGAAATTGGTCAAAACTATT+TGG 0.259930 3_2:+69661586 None:intergenic
ATCAATTCAATGTCTTTAAC+TGG 0.265648 3_2:-69662526 Msa0420890:CDS
ACAGATATTGGAAAGAAATT+AGG 0.286784 3_2:+69662288 None:intergenic
CGTGGATAGCTCATGTCTTC+TGG 0.287615 3_2:+69663037 None:intergenic
AATGCCTTTAGAACAGATAT+TGG 0.289238 3_2:+69662276 None:intergenic
CTGTAATGTTGTTAGGATTT+CGG 0.297943 3_2:+69661626 None:intergenic
TGTGCTTGTTAAGGAAATTA+AGG 0.304790 3_2:+69661498 None:intergenic
ATTGCTCCTGTAATGTTGTT+AGG 0.311527 3_2:+69661619 None:intergenic
TAACCGGATGAGTTATAAAA+AGG 0.314921 3_2:+69662821 None:intergenic
TTTGAAGCTATTCCACCATT+TGG 0.352217 3_2:-69661445 Msa0420890:CDS
TTTGAAGGACCTGACCTTGC+AGG 0.353162 3_2:-69662998 Msa0420890:CDS
ATGGAAGCCAAAGGTGTTCC+TGG 0.353530 3_2:-69662324 Msa0420890:CDS
TTCCAAGGAGGTGGTGGAGG+TGG 0.363591 3_2:+69661412 None:intergenic
CGAAATCCTAACAACATTAC+AGG 0.366600 3_2:-69661625 Msa0420890:CDS
GTGGATCACTGAATGGTTCT+AGG 0.369729 3_2:-69663090 Msa0420890:CDS
TAATCCTGGTTACCCTTATG+AGG 0.370170 3_2:-69662603 Msa0420890:CDS
ATGTTGTTAGGATTTCGGTT+AGG 0.371448 3_2:+69661631 None:intergenic
TAGCAAAAGACATGGGAAAA+TGG 0.378035 3_2:+69663611 None:intergenic
TGTTGTTAGGATTTCGGTTA+GGG 0.380281 3_2:+69661632 None:intergenic
TGCCAACAGTAGTGATCATC+TGG 0.384464 3_2:+69663064 None:intergenic
TAAAATGCCTTGGAATTCTT+AGG 0.385681 3_2:+69662710 None:intergenic
TTGACCAATTTCATGATTCA+AGG 0.387324 3_2:-69661576 Msa0420890:CDS
GAGTTGGGATAATAAGTTAC+CGG 0.391969 3_2:-69662663 Msa0420890:CDS
ACTATGTAGCTCATGTTCAT+TGG 0.395336 3_2:+69661760 None:intergenic
TGCCAGAGAACTCATTAAAT+GGG 0.398898 3_2:-69663521 Msa0420890:CDS
TGGTAAGACTAGTAACATTA+TGG 0.398981 3_2:+69662564 None:intergenic
GCCATTTCTCCTGCAAGGTC+AGG 0.400536 3_2:+69662989 None:intergenic
TTGGAATTCTTAGGCACATC+AGG 0.409425 3_2:+69662719 None:intergenic
ATGAGCTACATAGTAGGATA+TGG 0.410733 3_2:-69661751 Msa0420890:CDS
GATGTAATCCATCTGTTTCA+TGG 0.410762 3_2:+69661795 None:intergenic
CTTTCCAATATCTGTTCTAA+AGG 0.414260 3_2:-69662280 Msa0420890:CDS
ACTACCTGTTGTGCTTGTTA+AGG 0.414924 3_2:+69661489 None:intergenic
TATACTGAACCAACTTTAGC+TGG 0.415273 3_2:-69661541 Msa0420890:CDS
GTTAGGATGTTTCTTAATCC+TGG 0.415763 3_2:-69662617 Msa0420890:CDS
ATACTAAGCATATCCTCATA+AGG 0.417547 3_2:+69662590 None:intergenic
ATGCAGCATTGACAACATAT+TGG 0.418995 3_2:+69662373 None:intergenic
ACCTGACCTTGCAGGAGAAA+TGG 0.419662 3_2:-69662990 Msa0420890:CDS
CTTCAAATACAGTTGTTGTT+GGG 0.425949 3_2:+69663014 None:intergenic
CCATTGATCTCCGGTGCGGC+TGG 0.426847 3_2:+69666820 None:intergenic
GGTTTCCAAGGAGGTGGTGG+AGG 0.427321 3_2:+69661409 None:intergenic
CTGCAATGTTGCTGCTAACA+AGG 0.428791 3_2:-69662640 Msa0420890:CDS
TTTGCATTTGCAAGAGACTT+TGG 0.429572 3_2:-69662884 Msa0420890:CDS
CAAAGAGCAATGGAATTTCA+TGG 0.434088 3_2:-69663726 Msa0420890:CDS
AATTACTCATCATGCATTCA+AGG 0.437438 3_2:-69666904 None:intergenic
CCTTCAAATACAGTTGTTGT+TGG 0.439528 3_2:+69663013 None:intergenic
ATCCACCTCCACCACCTCCT+TGG 0.444399 3_2:-69661414 Msa0420890:CDS
CAGCCGCACCGGAGATCAAT+GGG 0.447656 3_2:-69666819 Msa0420890:CDS
AAAACCTTGGCAATGATGAT+AGG 0.448092 3_2:+69666605 None:intergenic
AAATACTACCTACATTTCCT+TGG 0.451110 3_2:-69662750 Msa0420890:CDS
TCATGCATTCAAGGAATCAA+TGG 0.452562 3_2:-69666895 Msa0420890:CDS
AATGTCTTTAACTGGACTAA+AGG 0.453410 3_2:-69662518 Msa0420890:intron
TGGTAATCGACGTGAGGGAT+TGG 0.455806 3_2:-69666774 Msa0420890:CDS
AGAGCAAGGGTGTAATTATC+AGG 0.456108 3_2:+69666554 None:intergenic
CAACTCAAAACACTCAAATC+AGG 0.456687 3_2:+69662680 None:intergenic
GTAGGTGAAGAATGATGTTT+AGG 0.458364 3_2:+69666581 None:intergenic
TGGACGAGACATTTCAAAGC+TGG 0.461650 3_2:-69666754 Msa0420890:CDS
ATACCATCCAGGAACACCTT+TGG 0.461703 3_2:+69662317 None:intergenic
TGCCTTGTCCCATTGATCTC+CGG 0.462338 3_2:+69666811 None:intergenic
CCTCTATGATGAACATGTCT+TGG 0.462506 3_2:+69661718 None:intergenic
CATGTACTCATCAAAGTAAC+CGG 0.462682 3_2:+69662805 None:intergenic
ATTTCCTTAACAAGCACAAC+AGG 0.462832 3_2:-69661493 Msa0420890:CDS
ACCCCATTTAATGAGTTCTC+TGG 0.464185 3_2:+69663519 None:intergenic
TGAGTCACAAGGCATTGAAA+TGG 0.465887 3_2:-69666670 Msa0420890:CDS
TATTAACAAAATTTATGCTC+AGG 0.465959 3_2:-69663455 Msa0420890:intron
AAAGGCATTTGCAACCTCTC+AGG 0.468135 3_2:-69662262 Msa0420890:intron
AATACAGTTGTTGTTGGGCG+TGG 0.469982 3_2:+69663019 None:intergenic
CATGCATTCAAGGAATCAAT+GGG 0.471241 3_2:-69666894 Msa0420890:CDS
TGTTGCTGCTAACAAGGGTT+AGG 0.473272 3_2:-69662634 Msa0420890:CDS
AGTACATGTGGGGTGGTGCT+TGG 0.473838 3_2:-69662790 Msa0420890:CDS
GAAACAGATGGATTACATCA+TGG 0.474308 3_2:-69661791 Msa0420890:CDS
CCAGCCGCACCGGAGATCAA+TGG 0.478807 3_2:-69666820 Msa0420890:CDS
ATTACTCATGCACTGGTGGT+TGG 0.486491 3_2:-69661669 Msa0420890:CDS
CATGGTTTCCAAGGAGGTGG+TGG 0.493242 3_2:+69661406 None:intergenic
GTTGGTGGTTATTATGATGC+AGG 0.495040 3_2:-69663649 Msa0420890:CDS
TACTAAGCATATCCTCATAA+GGG 0.496207 3_2:+69662591 None:intergenic
TTGCTATGACAATGCTAAGC+TGG 0.498626 3_2:-69663594 Msa0420890:CDS
CCAACAACAACTGTATTTGA+AGG 0.498853 3_2:-69663013 Msa0420890:CDS
TTGAATAAGCAGCATCGTCT+AGG 0.501483 3_2:+69662936 None:intergenic
AGGCTTCATATAAAATGCCT+TGG 0.502296 3_2:+69662700 None:intergenic
CCTGCATTTCCAGCTAAAGT+TGG 0.502786 3_2:+69661532 None:intergenic
CCTTCCTATCATCATTGCCA+AGG 0.506351 3_2:-69666609 Msa0420890:CDS
TTATATTCCCATGAAACAGA+TGG 0.506363 3_2:-69661803 Msa0420890:CDS
GGAGAGATTGTGGTTGTCCA+TGG 0.513687 3_2:+69662394 None:intergenic
AAGGCAGCGTTGCTCGATCA+TGG 0.514359 3_2:-69666794 Msa0420890:CDS
CCAAGACATGTTCATCATAG+AGG 0.514706 3_2:-69661718 Msa0420890:CDS
TGAAATTCATGTTAGGTTGG+TGG 0.514876 3_2:-69663109 Msa0420890:intron
ATGGGATGCAGAACTGTTGA+AGG 0.514883 3_2:+69663477 None:intergenic
CCAACTTTAGCTGGAAATGC+AGG 0.519047 3_2:-69661532 Msa0420890:CDS
TTCAAAGCTGGATTCTTGAA+AGG 0.521917 3_2:-69666742 Msa0420890:CDS
AGCAATGGAATTTCATGGAG+AGG 0.525294 3_2:-69663721 Msa0420890:CDS
ATGTAATCCATCTGTTTCAT+GGG 0.525318 3_2:+69661796 None:intergenic
ATGAACATGAGCTACATAGT+AGG 0.525898 3_2:-69661757 Msa0420890:CDS
TTGGTGGTTATTATGATGCA+GGG 0.526131 3_2:-69663648 Msa0420890:CDS
GGTGCGGCTGGTCTCATCAC+CGG 0.526689 3_2:+69666832 None:intergenic
GCATCCAAAATCCACATACT+TGG 0.535254 3_2:+69666700 None:intergenic
TTAACAAGCACAACAGGTAG+TGG 0.541184 3_2:-69661487 Msa0420890:CDS
CATGCACTGGTGGTTGGAAG+TGG 0.541288 3_2:-69661663 Msa0420890:CDS
ATTAGTTGCCAAGGAAATGT+AGG 0.544392 3_2:+69662742 None:intergenic
GGGAACTCAGGTTTACAAGA+TGG 0.549155 3_2:-69663700 Msa0420890:CDS
GGTGATGAGACCAGCCGCAC+CGG 0.553639 3_2:-69666830 Msa0420890:CDS
AAACAGATGGATTACATCAT+GGG 0.554236 3_2:-69661790 Msa0420890:CDS
AACATTACAGGAGCAATGGT+TGG 0.556744 3_2:-69661613 Msa0420890:CDS
GTTAGCAGCAACATTGCAGC+CGG 0.560502 3_2:+69662644 None:intergenic
GAATGATATCATGGTTTCCA+AGG 0.560598 3_2:+69661397 None:intergenic
AGCAATAGTGAAGTGCCATC+CGG 0.562209 3_2:-69666851 Msa0420890:CDS
TAGGTTGGTGGATCACTGAA+TGG 0.562722 3_2:-69663097 Msa0420890:CDS
GTGTAATTATCAGGTGGTGT+AGG 0.566017 3_2:+69666563 None:intergenic
CACCGGAGATCAATGGGACA+AGG 0.566153 3_2:-69666813 Msa0420890:CDS
GAAGAAGAAGACCAAGTATG+TGG 0.572331 3_2:-69666711 Msa0420890:CDS
ATTTCATGGAGAGGGAACTC+AGG 0.573575 3_2:-69663712 Msa0420890:CDS
CCTTGGCAATGATGATAGGA+AGG 0.574607 3_2:+69666609 None:intergenic
GCTGATTATATGGAAGCCAA+AGG 0.576136 3_2:-69662333 Msa0420890:CDS
GTTACTTTGATGAGTACATG+TGG 0.577224 3_2:-69662802 Msa0420890:CDS
GCAATGGAATTTCATGGAGA+GGG 0.579923 3_2:-69663720 Msa0420890:CDS
CATTGTCATAGCAAAAGACA+TGG 0.581404 3_2:+69663603 None:intergenic
GGGAGATTGCCAAAGAGCAA+TGG 0.582582 3_2:-69663736 Msa0420890:CDS
CACATCAGGATTAGTTGCCA+AGG 0.583526 3_2:+69662733 None:intergenic
ACAACATATTGGAGAGATTG+TGG 0.586233 3_2:+69662384 None:intergenic
ATGATGTTTAGGCAAAACCT+TGG 0.586680 3_2:+69666592 None:intergenic
CTGCTGCCATTTCTCCTGCA+AGG 0.587328 3_2:+69662984 None:intergenic
AAGCCAAAGGTGTTCCTGGA+TGG 0.590814 3_2:-69662320 Msa0420890:CDS
CACCAGATGATCACTACTGT+TGG 0.591909 3_2:-69663066 Msa0420890:CDS
TATCATGGTTTCCAAGGAGG+TGG 0.593765 3_2:+69661403 None:intergenic
ATTACAGGAGCAATGGTTGG+AGG 0.593896 3_2:-69661610 Msa0420890:CDS
CGGCTGGTCTCATCACCGGA+TGG 0.597620 3_2:+69666836 None:intergenic
GGTGTTCCTGGATGGTATTG+TGG 0.602884 3_2:-69662312 Msa0420890:CDS
TAACAACATTACAGGAGCAA+TGG 0.606000 3_2:-69661617 Msa0420890:CDS
ATATCCTCATAAGGGTAACC+AGG 0.610242 3_2:+69662599 None:intergenic
TATTCAAAGAAACTCGTCAA+GGG 0.616213 3_2:-69662920 Msa0420890:CDS
TTAGGACCACAATACCATCC+AGG 0.617520 3_2:+69662306 None:intergenic
TGCAATGTTGCTGCTAACAA+GGG 0.618825 3_2:-69662639 Msa0420890:CDS
AAAGTCTCTTGCAAATGCAA+AGG 0.621930 3_2:+69662886 None:intergenic
GTAGCGCTTTGTGAAGAGCA+AGG 0.623041 3_2:+69666540 None:intergenic
TAGCGCTTTGTGAAGAGCAA+GGG 0.623820 3_2:+69666541 None:intergenic
CGATCATGGTAATCGACGTG+AGG 0.629064 3_2:-69666780 Msa0420890:CDS
CATTCAAGGAATCAATGGGG+AGG 0.631381 3_2:-69666890 Msa0420890:CDS
TGATGTGCCTAAGAATTCCA+AGG 0.638916 3_2:-69662717 Msa0420890:CDS
TGATATCATGGTTTCCAAGG+AGG 0.640965 3_2:+69661400 None:intergenic
ATTCAAGGAATCAATGGGGA+GGG 0.642541 3_2:-69666889 Msa0420890:CDS
TTATTCAAAGAAACTCGTCA+AGG 0.644851 3_2:-69662921 Msa0420890:CDS
GATCATGGTAATCGACGTGA+GGG 0.648711 3_2:-69666779 Msa0420890:CDS
TTTGATGAGTACATGTGGGG+TGG 0.652316 3_2:-69662797 Msa0420890:CDS
TACTTTGATGAGTACATGTG+GGG 0.670908 3_2:-69662800 Msa0420890:CDS
GCCAGAGAACTCATTAAATG+GGG 0.671647 3_2:-69663520 Msa0420890:CDS
ATTGTCATAGCAAAAGACAT+GGG 0.674505 3_2:+69663604 None:intergenic
ATGCATCGTGTTGAGTCACA+AGG 0.674798 3_2:-69666681 Msa0420890:CDS
TTGATGAAGATAAGAGCACA+TGG 0.677233 3_2:+69662544 None:intergenic
AAAAGATCAACATACAGTCG+CGG 0.678960 3_2:-69662860 Msa0420890:CDS
GCAAGGGTGTAATTATCAGG+TGG 0.684686 3_2:+69666557 None:intergenic
AATGTAGGTAGTATTTCCAG+TGG 0.704279 3_2:+69662757 None:intergenic
GGGTTGATACAATTGAACCA+TGG 0.709415 3_2:-69662411 Msa0420890:CDS
TTACTTTGATGAGTACATGT+GGG 0.709906 3_2:-69662801 Msa0420890:CDS
TGGTGGTTATTATGATGCAG+GGG 0.711733 3_2:-69663647 Msa0420890:CDS
TGTCCCATTGATCTCCGGTG+CGG 0.718263 3_2:+69666816 None:intergenic
TGACGAATTTGGTACCTGAG+AGG 0.773845 3_2:+69662248 None:intergenic
ATGCATTCAAGGAATCAATG+GGG 0.776623 3_2:-69666893 Msa0420890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATAATAAAATAATA+AGG - chr3_2:69663001-69663020 Msa0420890:CDS 0.0%
!! AATAAATCAAATAAAATCAT+GGG + chr3_2:69661921-69661940 None:intergenic 10.0%
!! TAATAAATCAAATAAAATCA+TGG + chr3_2:69661922-69661941 None:intergenic 10.0%
!!! GATAATAATTTACATTTTAA+GGG - chr3_2:69662310-69662329 Msa0420890:CDS 10.0%
!!! ATAATAATTTACATTTTAAG+GGG - chr3_2:69662311-69662330 Msa0420890:CDS 10.0%
!!! TTTTTCACTTATAATATTAA+GGG + chr3_2:69662475-69662494 None:intergenic 10.0%
!! TATTATATATTGTATTTCAT+TGG + chr3_2:69662518-69662537 None:intergenic 10.0%
!!! TATATTCATATTTTTTTTGA+AGG - chr3_2:69662708-69662727 Msa0420890:CDS 10.0%
!!! TTAGTTAAAATATGTTTTTT+TGG + chr3_2:69662831-69662850 None:intergenic 10.0%
!!! AATTTTTTGAATAAAAAACA+AGG + chr3_2:69665834-69665853 None:intergenic 10.0%
!!! TACACTCAATATATTTTTTT+AGG - chr3_2:69661951-69661970 Msa0420890:intron 15.0%
!!! CTCTATTTTTATTTATTCTA+AGG + chr3_2:69662013-69662032 None:intergenic 15.0%
!!! AATTGAACTTTACTTTTTTT+TGG - chr3_2:69662271-69662290 Msa0420890:CDS 15.0%
!!! GGATAATAATTTACATTTTA+AGG - chr3_2:69662309-69662328 Msa0420890:CDS 15.0%
!! AATTTGCATTATATATTCAA+GGG + chr3_2:69662368-69662387 None:intergenic 15.0%
!! AAATTTGCATTATATATTCA+AGG + chr3_2:69662369-69662388 None:intergenic 15.0%
!!! GTTTTTCACTTATAATATTA+AGG + chr3_2:69662476-69662495 None:intergenic 15.0%
!! AAATAAATAAATTCTACAGA+AGG + chr3_2:69662570-69662589 None:intergenic 15.0%
!!! ATATTTGTTTTCTTACAAAA+GGG - chr3_2:69662743-69662762 Msa0420890:CDS 15.0%
!! ACTAGTATAAAAAAATGAAA+AGG + chr3_2:69663288-69663307 None:intergenic 15.0%
!! AAATAAAAAATGATATCAAC+AGG - chr3_2:69663449-69663468 Msa0420890:intron 15.0%
!! TTATAACCAAAATTAATAGA+AGG + chr3_2:69663646-69663665 None:intergenic 15.0%
!!! TTGTTATTAGCAAAAATTAA+TGG + chr3_2:69663723-69663742 None:intergenic 15.0%
!!! AACCAATTAAATTTGTTATT+TGG - chr3_2:69663822-69663841 Msa0420890:intron 15.0%
!!! TGATTCAAATTATTTTTGTA+AGG + chr3_2:69664424-69664443 None:intergenic 15.0%
!! TGAATATAAACAAAAATACA+TGG - chr3_2:69664735-69664754 Msa0420890:intron 15.0%
!!! AGCATAAATTTTGTTAATAT+GGG + chr3_2:69664842-69664861 None:intergenic 15.0%
!!! ATTTTTTTAGGTGAAAATGA+TGG - chr3_2:69661963-69661982 Msa0420890:intron 20.0%
!! TAACATCTAGTATTAACTAA+AGG + chr3_2:69662111-69662130 None:intergenic 20.0%
!!! ATTATTCACTTGCTATATTA+TGG - chr3_2:69662146-69662165 Msa0420890:intron 20.0%
!! AATATCATAGATCATCTTAA+AGG - chr3_2:69662202-69662221 Msa0420890:intron 20.0%
!!! CATATTTGTTTTCTTACAAA+AGG - chr3_2:69662742-69662761 Msa0420890:CDS 20.0%
!! TATGGGATGAAATTATTTAA+AGG + chr3_2:69663414-69663433 None:intergenic 20.0%
!! AAATAAGAATGGAATGAAAA+CGG + chr3_2:69663538-69663557 None:intergenic 20.0%
!!! ATTAGTCCTTCTATTAATTT+TGG - chr3_2:69663637-69663656 Msa0420890:CDS 20.0%
!! TGAAAATGTTCATATTTAGT+TGG - chr3_2:69663697-69663716 Msa0420890:CDS 20.0%
!!! CAATTAAATTTGTTATTTGG+CGG - chr3_2:69663825-69663844 Msa0420890:intron 20.0%
!!! CTATTTTTTGGACAAAATAA+GGG + chr3_2:69663949-69663968 None:intergenic 20.0%
!!! ACTATTTTTTGGACAAAATA+AGG + chr3_2:69663950-69663969 None:intergenic 20.0%
!!! TTTAGTTTTCTAGTTATTGT+TGG - chr3_2:69664083-69664102 Msa0420890:intron 20.0%
!! AATTCATTTCATGTCATAAA+AGG + chr3_2:69664254-69664273 None:intergenic 20.0%
!! TGCAATTATCATCTTATTAA+AGG + chr3_2:69664370-69664389 None:intergenic 20.0%
!!! CTAGTACATTTTTAAACATA+TGG + chr3_2:69664393-69664412 None:intergenic 20.0%
!! AAAGTCTAAGTGAAAAATTA+AGG - chr3_2:69664461-69664480 Msa0420890:intron 20.0%
!! AGTTACATCATTAAAAATCA+TGG + chr3_2:69664510-69664529 None:intergenic 20.0%
!!! GAGCATAAATTTTGTTAATA+TGG + chr3_2:69664843-69664862 None:intergenic 20.0%
!! TATTAACAAAATTTATGCTC+AGG - chr3_2:69664843-69664862 Msa0420890:intron 20.0%
!! ATGAAAGTTGGAATATTTAA+GGG + chr3_2:69664985-69665004 None:intergenic 20.0%
!! TATGAAAGTTGGAATATTTA+AGG + chr3_2:69664986-69665005 None:intergenic 20.0%
!! CATTATTGAGATCATAAATT+TGG - chr3_2:69665147-69665166 Msa0420890:intron 20.0%
!! TTATAAAAAGGTTCAATGTA+AGG + chr3_2:69665468-69665487 None:intergenic 20.0%
!! TATCTAAATACTGAGAATTA+TGG + chr3_2:69666287-69666306 None:intergenic 20.0%
!!! AAGCAAACAACATTTTGAAA+GGG + chr3_2:69662041-69662060 None:intergenic 25.0%
!! AAAGCAAACAACATTTTGAA+AGG + chr3_2:69662042-69662061 None:intergenic 25.0%
!!! AATGTTGTTTGCTTTTGAAT+AGG - chr3_2:69662047-69662066 Msa0420890:intron 25.0%
!! TTTTGGATCAAGTAGTTTAA+TGG - chr3_2:69662288-69662307 Msa0420890:CDS 25.0%
! CATCATAAACTTAACTCAAT+TGG + chr3_2:69662396-69662415 None:intergenic 25.0%
! TATTAAGGGTAATCGTATTT+AGG + chr3_2:69662461-69662480 None:intergenic 25.0%
! TATACGTGAGATAAACAATT+TGG - chr3_2:69662906-69662925 Msa0420890:CDS 25.0%
! ATACGTGAGATAAACAATTT+GGG - chr3_2:69662907-69662926 Msa0420890:CDS 25.0%
! AGCATTTGGCAATAATAAAA+TGG + chr3_2:69663353-69663372 None:intergenic 25.0%
! AAAAAATGATATCAACAGGA+CGG - chr3_2:69663453-69663472 Msa0420890:intron 25.0%
! AATAAGAATGGAATGAAAAC+GGG + chr3_2:69663537-69663556 None:intergenic 25.0%
! ATCGTGAAACAAAATAAGAA+TGG + chr3_2:69663549-69663568 None:intergenic 25.0%
!! ATAACACGCTTTATATGTTT+TGG - chr3_2:69663567-69663586 Msa0420890:CDS 25.0%
! CTAATAACAACAAAATTGAG+AGG - chr3_2:69663733-69663752 Msa0420890:CDS 25.0%
!! AGAGAGTTTTTATCAAGAAA+AGG - chr3_2:69663795-69663814 Msa0420890:intron 25.0%
! CGCCAAATAACAAATTTAAT+TGG + chr3_2:69663827-69663846 None:intergenic 25.0%
! AATAAGGGAAATGATAGATA+CGG + chr3_2:69663934-69663953 None:intergenic 25.0%
!!! GCGATGTATTAACTATTTTT+TGG + chr3_2:69663961-69663980 None:intergenic 25.0%
!!! ATGTATCGATCCAATTTTAT+CGG + chr3_2:69664027-69664046 None:intergenic 25.0%
! TATGGATATTTGATATGTTG+TGG + chr3_2:69664228-69664247 None:intergenic 25.0%
!!! AACAAGTCCTTTTTTATCAT+CGG + chr3_2:69664632-69664651 None:intergenic 25.0%
! TTGAGATTGTATATGAAAGT+TGG + chr3_2:69664997-69665016 None:intergenic 25.0%
! AACTTTCATATACAATCTCA+AGG - chr3_2:69664996-69665015 Msa0420890:intron 25.0%
!! ATACATCTGAAATTCATGTT+AGG - chr3_2:69665182-69665201 Msa0420890:intron 25.0%
! ATCAATTCAATGTCTTTAAC+TGG - chr3_2:69665772-69665791 Msa0420890:intron 25.0%
! AAGTTTCAACAAAATTTGCA+GGG - chr3_2:69665864-69665883 Msa0420890:intron 25.0%
!!! ATCTCTTTTTGCTGATTATA+TGG - chr3_2:69665955-69665974 Msa0420890:intron 25.0%
! ACAGATATTGGAAAGAAATT+AGG + chr3_2:69666013-69666032 None:intergenic 25.0%
! CTTAACACAATTTAAGTAGT+TGG - chr3_2:69666164-69666183 Msa0420890:intron 25.0%
! GTTTAATGAAGTTACATTTG+TGG + chr3_2:69666244-69666263 None:intergenic 25.0%
! CAAATGTAACTTCATTAAAC+TGG - chr3_2:69666244-69666263 Msa0420890:intron 25.0%
!! AACTTCATTAAACTGGATTT+TGG - chr3_2:69666251-69666270 Msa0420890:intron 25.0%
!! GAGTAATTTTTGTGATCATT+TGG + chr3_2:69666616-69666635 None:intergenic 25.0%
! TGAAATTGGTCAAAACTATT+TGG + chr3_2:69666715-69666734 None:intergenic 25.0%
!! TTTTCCTTGAATCATGAAAT+TGG + chr3_2:69666729-69666748 None:intergenic 25.0%
! TTGGTCTTCTTCTTCATATT+TGG + chr3_2:69661582-69661601 None:intergenic 30.0%
!!! AAGGCATTGAAATGGATTTT+TGG - chr3_2:69661636-69661655 Msa0420890:CDS 30.0%
!!! GATTTTTGGTACAATCTTTG+TGG - chr3_2:69661650-69661669 Msa0420890:CDS 30.0%
! TTTGTGGCTTTTTGTGTAAT+TGG - chr3_2:69661666-69661685 Msa0420890:CDS 30.0%
TGCATTATTCTGTTCTCATT+TGG - chr3_2:69661866-69661885 Msa0420890:intron 30.0%
! TTGATTGTTATGACTTTTGC+TGG - chr3_2:69662077-69662096 Msa0420890:intron 30.0%
TGCATTATATATTCAAGGGT+CGG + chr3_2:69662364-69662383 None:intergenic 30.0%
ATAAACAATTTGGGTGTGTT+TGG - chr3_2:69662916-69662935 Msa0420890:CDS 30.0%
AAAGTGCATTTGTAAGATGA+TGG + chr3_2:69663099-69663118 None:intergenic 30.0%
TTATTGCCAAATGCTATCTA+AGG - chr3_2:69663358-69663377 Msa0420890:intron 30.0%
AAAAGACCTTAGATAGCATT+TGG + chr3_2:69663367-69663386 None:intergenic 30.0%
TTGAAAGAGTCAAGAACTAT+GGG + chr3_2:69663431-69663450 None:intergenic 30.0%
TTTGAAAGAGTCAAGAACTA+TGG + chr3_2:69663432-69663451 None:intergenic 30.0%
AATGGTGTGTAATTAAGGAA+AGG - chr3_2:69663862-69663881 Msa0420890:intron 30.0%
TATTTGATATGTTGTGGTGT+AGG + chr3_2:69664222-69664241 None:intergenic 30.0%
TCATGTCATAAAAGGTTGTA+TGG + chr3_2:69664246-69664265 None:intergenic 30.0%
AAAGACACCGATGATAAAAA+AGG - chr3_2:69664622-69664641 Msa0420890:intron 30.0%
GATGATAAAAAAGGACTTGT+TGG - chr3_2:69664631-69664650 Msa0420890:intron 30.0%
ATTGTCATAGCAAAAGACAT+GGG + chr3_2:69664697-69664716 None:intergenic 30.0%
GTAATGGCAAAGACTAAAAT+TGG + chr3_2:69665064-69665083 None:intergenic 30.0%
ATTTCAGATGTATTGCTCTT+AGG + chr3_2:69665175-69665194 None:intergenic 30.0%
! ATCTGAAATTCATGTTAGGT+TGG - chr3_2:69665186-69665205 Msa0420890:intron 30.0%
! CTTCAAATACAGTTGTTGTT+GGG + chr3_2:69665287-69665306 None:intergenic 30.0%
TTATTCAAAGAAACTCGTCA+AGG - chr3_2:69665377-69665396 Msa0420890:intron 30.0%
TATTCAAAGAAACTCGTCAA+GGG - chr3_2:69665378-69665397 Msa0420890:intron 30.0%
! GAACCTTTTTATAACTCATC+CGG - chr3_2:69665474-69665493 Msa0420890:intron 30.0%
TAACCGGATGAGTTATAAAA+AGG + chr3_2:69665480-69665499 None:intergenic 30.0%
TTACTTTGATGAGTACATGT+GGG - chr3_2:69665497-69665516 Msa0420890:intron 30.0%
AAATACTACCTACATTTCCT+TGG - chr3_2:69665548-69665567 Msa0420890:intron 30.0%
TAAAATGCCTTGGAATTCTT+AGG + chr3_2:69665591-69665610 None:intergenic 30.0%
!!! TGATTTGAGTGTTTTGAGTT+GGG - chr3_2:69665620-69665639 Msa0420890:intron 30.0%
TACTAAGCATATCCTCATAA+GGG + chr3_2:69665710-69665729 None:intergenic 30.0%
ATACTAAGCATATCCTCATA+AGG + chr3_2:69665711-69665730 None:intergenic 30.0%
TGGTAAGACTAGTAACATTA+TGG + chr3_2:69665737-69665756 None:intergenic 30.0%
AATGTCTTTAACTGGACTAA+AGG - chr3_2:69665780-69665799 Msa0420890:intron 30.0%
GAAGTTTCAACAAAATTTGC+AGG - chr3_2:69665863-69665882 Msa0420890:intron 30.0%
AGTTTCAACAAAATTTGCAG+GGG - chr3_2:69665865-69665884 Msa0420890:intron 30.0%
CTTTCCAATATCTGTTCTAA+AGG - chr3_2:69666018-69666037 Msa0420890:intron 30.0%
!! AATGCCTTTAGAACAGATAT+TGG + chr3_2:69666025-69666044 None:intergenic 30.0%
TCAAAATGATGTGACGAATT+TGG + chr3_2:69666064-69666083 None:intergenic 30.0%
GGTTAATTACGTTCAGTAAA+TGG - chr3_2:69666185-69666204 Msa0420890:intron 30.0%
TTATATTCCCATGAAACAGA+TGG - chr3_2:69666495-69666514 Msa0420890:intron 30.0%
ATGTAATCCATCTGTTTCAT+GGG + chr3_2:69666505-69666524 None:intergenic 30.0%
!! AAACAGATGGATTACATCAT+GGG - chr3_2:69666508-69666527 Msa0420890:intron 30.0%
CTGTAATGTTGTTAGGATTT+CGG + chr3_2:69666675-69666694 None:intergenic 30.0%
TTGACCAATTTCATGATTCA+AGG - chr3_2:69666722-69666741 Msa0420890:CDS 30.0%
! TGTGCTTGTTAAGGAAATTA+AGG + chr3_2:69666803-69666822 None:intergenic 30.0%
CAAAAATGGTATTAACGTCA+AGG + chr3_2:69666837-69666856 None:intergenic 30.0%
ATGCATTCAAGGAATCAATG+GGG - chr3_2:69661405-69661424 Msa0420890:CDS 35.0%
TTCAAAGCTGGATTCTTGAA+AGG - chr3_2:69661556-69661575 Msa0420890:CDS 35.0%
! AAGACCAAGTATGTGGATTT+TGG - chr3_2:69661594-69661613 Msa0420890:CDS 35.0%
AAAACCTTGGCAATGATGAT+AGG + chr3_2:69661696-69661715 None:intergenic 35.0%
ATGATGTTTAGGCAAAACCT+TGG + chr3_2:69661709-69661728 None:intergenic 35.0%
GTAGGTGAAGAATGATGTTT+AGG + chr3_2:69661720-69661739 None:intergenic 35.0%
GCATTATATATTCAAGGGTC+GGG + chr3_2:69662363-69662382 None:intergenic 35.0%
GGATAGTTGTATTTGATCGA+AGG + chr3_2:69662440-69662459 None:intergenic 35.0%
TAGACACAAAATCTCCTAAG+CGG + chr3_2:69663181-69663200 None:intergenic 35.0%
AGGAATTCAAAGCAACTTGT+TGG + chr3_2:69663394-69663413 None:intergenic 35.0%
! TTGTGTCGCTAGTATTTGAA+TGG - chr3_2:69663499-69663518 Msa0420890:CDS 35.0%
!! TTGTTATTTGGCGGAAATCA+AGG - chr3_2:69663834-69663853 Msa0420890:intron 35.0%
! TGTTATTTGGCGGAAATCAA+GGG - chr3_2:69663835-69663854 Msa0420890:intron 35.0%
! GAGGTAATGGTGTGTAATTA+AGG - chr3_2:69663857-69663876 Msa0420890:intron 35.0%
! TTTTATCGGAAGTTCCTGAA+GGG + chr3_2:69664013-69664032 None:intergenic 35.0%
! ATTTTATCGGAAGTTCCTGA+AGG + chr3_2:69664014-69664033 None:intergenic 35.0%
TCAGGAACTTCCGATAAAAT+TGG - chr3_2:69664014-69664033 Msa0420890:intron 35.0%
TACCAATTGTTGAGAAGTAG+AGG - chr3_2:69664182-69664201 Msa0420890:intron 35.0%
ATCCTCTACTTCTCAACAAT+TGG + chr3_2:69664187-69664206 None:intergenic 35.0%
!! TACCTTTGATTTGTGAAGCT+GGG - chr3_2:69664542-69664561 Msa0420890:intron 35.0%
CATGAAATTCCATTGCTCTT+TGG + chr3_2:69664574-69664593 None:intergenic 35.0%
CAAAGAGCAATGGAATTTCA+TGG - chr3_2:69664572-69664591 Msa0420890:intron 35.0%
!! GATAAAAAAGGACTTGTTGG+TGG - chr3_2:69664634-69664653 Msa0420890:intron 35.0%
! TTGGTGGTTATTATGATGCA+GGG - chr3_2:69664650-69664669 Msa0420890:intron 35.0%
TAGCAAAAGACATGGGAAAA+TGG + chr3_2:69664690-69664709 None:intergenic 35.0%
CATTGTCATAGCAAAAGACA+TGG + chr3_2:69664698-69664717 None:intergenic 35.0%
ATGCCAGAGAACTCATTAAA+TGG - chr3_2:69664776-69664795 Msa0420890:intron 35.0%
TGCCAGAGAACTCATTAAAT+GGG - chr3_2:69664777-69664796 Msa0420890:intron 35.0%
AATACGCGACTTCTTCAATA+GGG + chr3_2:69664930-69664949 None:intergenic 35.0%
GACAGATGTTACTGTAGTAA+TGG + chr3_2:69665080-69665099 None:intergenic 35.0%
!! TGAAATTCATGTTAGGTTGG+TGG - chr3_2:69665189-69665208 Msa0420890:intron 35.0%
CCTTCAAATACAGTTGTTGT+TGG + chr3_2:69665288-69665307 None:intergenic 35.0%
CCAACAACAACTGTATTTGA+AGG - chr3_2:69665285-69665304 Msa0420890:intron 35.0%
AAAGTCTCTTGCAAATGCAA+AGG + chr3_2:69665415-69665434 None:intergenic 35.0%
TTTGCATTTGCAAGAGACTT+TGG - chr3_2:69665414-69665433 Msa0420890:intron 35.0%
AAAAGATCAACATACAGTCG+CGG - chr3_2:69665438-69665457 Msa0420890:intron 35.0%
CATGTACTCATCAAAGTAAC+CGG + chr3_2:69665496-69665515 None:intergenic 35.0%
! GTTACTTTGATGAGTACATG+TGG - chr3_2:69665496-69665515 Msa0420890:intron 35.0%
TACTTTGATGAGTACATGTG+GGG - chr3_2:69665498-69665517 Msa0420890:intron 35.0%
AATGTAGGTAGTATTTCCAG+TGG + chr3_2:69665544-69665563 None:intergenic 35.0%
ATTAGTTGCCAAGGAAATGT+AGG + chr3_2:69665559-69665578 None:intergenic 35.0%
AGGCTTCATATAAAATGCCT+TGG + chr3_2:69665601-69665620 None:intergenic 35.0%
CAACTCAAAACACTCAAATC+AGG + chr3_2:69665621-69665640 None:intergenic 35.0%
!! CTGATTTGAGTGTTTTGAGT+TGG - chr3_2:69665619-69665638 Msa0420890:intron 35.0%
GAGTTGGGATAATAAGTTAC+CGG - chr3_2:69665635-69665654 Msa0420890:intron 35.0%
GTTAGGATGTTTCTTAATCC+TGG - chr3_2:69665681-69665700 Msa0420890:intron 35.0%
! TTGATGAAGATAAGAGCACA+TGG + chr3_2:69665757-69665776 None:intergenic 35.0%
GTTTCAACAAAATTTGCAGG+GGG - chr3_2:69665866-69665885 Msa0420890:intron 35.0%
TTTCAACAAAATTTGCAGGG+GGG - chr3_2:69665867-69665886 Msa0420890:intron 35.0%
ACAACATATTGGAGAGATTG+TGG + chr3_2:69665917-69665936 None:intergenic 35.0%
!! ATGCAGCATTGACAACATAT+TGG + chr3_2:69665928-69665947 None:intergenic 35.0%
! TGTTGTCAATGCTGCATTTT+TGG - chr3_2:69665931-69665950 Msa0420890:intron 35.0%
TACGTTCAGTAAATGGTCAA+TGG - chr3_2:69666192-69666211 Msa0420890:intron 35.0%
AAATGGTCAATGGATATACC+AGG - chr3_2:69666202-69666221 Msa0420890:intron 35.0%
AGTTGAACACCTGAGAATTA+TGG - chr3_2:69666314-69666333 Msa0420890:intron 35.0%
GATGTAATCCATCTGTTTCA+TGG + chr3_2:69666506-69666525 None:intergenic 35.0%
!! GAAACAGATGGATTACATCA+TGG - chr3_2:69666507-69666526 Msa0420890:intron 35.0%
ACTATGTAGCTCATGTTCAT+TGG + chr3_2:69666541-69666560 None:intergenic 35.0%
ATGAACATGAGCTACATAGT+AGG - chr3_2:69666541-69666560 Msa0420890:CDS 35.0%
ATGAGCTACATAGTAGGATA+TGG - chr3_2:69666547-69666566 Msa0420890:CDS 35.0%
CACAAAAATTACTCATGCAC+TGG - chr3_2:69666622-69666641 Msa0420890:CDS 35.0%
AAAAATTACTCATGCACTGG+TGG - chr3_2:69666625-69666644 Msa0420890:CDS 35.0%
TGTTGTTAGGATTTCGGTTA+GGG + chr3_2:69666669-69666688 None:intergenic 35.0%
ATGTTGTTAGGATTTCGGTT+AGG + chr3_2:69666670-69666689 None:intergenic 35.0%
CGAAATCCTAACAACATTAC+AGG - chr3_2:69666673-69666692 Msa0420890:CDS 35.0%
ATTGCTCCTGTAATGTTGTT+AGG + chr3_2:69666682-69666701 None:intergenic 35.0%
TAACAACATTACAGGAGCAA+TGG - chr3_2:69666681-69666700 Msa0420890:CDS 35.0%
TATACTGAACCAACTTTAGC+TGG - chr3_2:69666757-69666776 Msa0420890:CDS 35.0%
ATTTCCTTAACAAGCACAAC+AGG - chr3_2:69666805-69666824 Msa0420890:CDS 35.0%
TGGTGGAATAGCTTCAAAAA+TGG + chr3_2:69666851-69666870 None:intergenic 35.0%
! TTTGAAGCTATTCCACCATT+TGG - chr3_2:69666853-69666872 Msa0420890:CDS 35.0%
ATTCAAGGAATCAATGGGGA+GGG - chr3_2:69661409-69661428 Msa0420890:CDS 40.0%
GAAGAAGAAGACCAAGTATG+TGG - chr3_2:69661587-69661606 Msa0420890:CDS 40.0%
GCATCCAAAATCCACATACT+TGG + chr3_2:69661601-69661620 None:intergenic 40.0%
!! TGAGTCACAAGGCATTGAAA+TGG - chr3_2:69661628-69661647 Msa0420890:CDS 40.0%
GTGTAATTATCAGGTGGTGT+AGG + chr3_2:69661738-69661757 None:intergenic 40.0%
! AGAGCAAGGGTGTAATTATC+AGG + chr3_2:69661747-69661766 None:intergenic 40.0%
!! TGTTTGCTTTTGAATAGGCG+TGG - chr3_2:69662052-69662071 Msa0420890:intron 40.0%
TTATTGAACCAGCCTTTGGA+AGG + chr3_2:69662805-69662824 None:intergenic 40.0%
GAACTTATTGAACCAGCCTT+TGG + chr3_2:69662809-69662828 None:intergenic 40.0%
!! ATCCTCTGAAACTGTGCTTA+TGG - chr3_2:69663150-69663169 Msa0420890:intron 40.0%
TTCCATAAGCACAGTTTCAG+AGG + chr3_2:69663155-69663174 None:intergenic 40.0%
TGCTTATGGAAAATCCGCTT+AGG - chr3_2:69663164-69663183 Msa0420890:intron 40.0%
TTTATCGGAAGTTCCTGAAG+GGG + chr3_2:69664012-69664031 None:intergenic 40.0%
!! GTACCTTTGATTTGTGAAGC+TGG - chr3_2:69664541-69664560 Msa0420890:intron 40.0%
AGCAATGGAATTTCATGGAG+AGG - chr3_2:69664577-69664596 Msa0420890:intron 40.0%
GCAATGGAATTTCATGGAGA+GGG - chr3_2:69664578-69664597 Msa0420890:intron 40.0%
!! GTTGGTGGTTATTATGATGC+AGG - chr3_2:69664649-69664668 Msa0420890:intron 40.0%
TGGTGGTTATTATGATGCAG+GGG - chr3_2:69664651-69664670 Msa0420890:intron 40.0%
TTGCTATGACAATGCTAAGC+TGG - chr3_2:69664704-69664723 Msa0420890:intron 40.0%
GCCAGAGAACTCATTAAATG+GGG - chr3_2:69664778-69664797 Msa0420890:intron 40.0%
ACCCCATTTAATGAGTTCTC+TGG + chr3_2:69664782-69664801 None:intergenic 40.0%
GAATACGCGACTTCTTCAAT+AGG + chr3_2:69664931-69664950 None:intergenic 40.0%
TTGAATAAGCAGCATCGTCT+AGG + chr3_2:69665365-69665384 None:intergenic 40.0%
TTGGAATTCTTAGGCACATC+AGG + chr3_2:69665582-69665601 None:intergenic 40.0%
TGATGTGCCTAAGAATTCCA+AGG - chr3_2:69665581-69665600 Msa0420890:intron 40.0%
TGCAATGTTGCTGCTAACAA+GGG - chr3_2:69665659-69665678 Msa0420890:intron 40.0%
TAATCCTGGTTACCCTTATG+AGG - chr3_2:69665695-69665714 Msa0420890:intron 40.0%
ATATCCTCATAAGGGTAACC+AGG + chr3_2:69665702-69665721 None:intergenic 40.0%
!! GGGTTGATACAATTGAACCA+TGG - chr3_2:69665887-69665906 Msa0420890:intron 40.0%
GCTGATTATATGGAAGCCAA+AGG - chr3_2:69665965-69665984 Msa0420890:intron 40.0%
GGCTAATGAGTTTCAATACC+TGG + chr3_2:69666223-69666242 None:intergenic 40.0%
AGTGCTAGACCATAATTCTC+AGG + chr3_2:69666326-69666345 None:intergenic 40.0%
! ATGGTCTAGCACTCATTTTC+AGG - chr3_2:69666333-69666352 Msa0420890:intron 40.0%
CCTCTATGATGAACATGTCT+TGG + chr3_2:69666583-69666602 None:intergenic 40.0%
CCAAGACATGTTCATCATAG+AGG - chr3_2:69666580-69666599 Msa0420890:CDS 40.0%
AACATTACAGGAGCAATGGT+TGG - chr3_2:69666685-69666704 Msa0420890:CDS 40.0%
! ACTACCTGTTGTGCTTGTTA+AGG + chr3_2:69666812-69666831 None:intergenic 40.0%
TTAACAAGCACAACAGGTAG+TGG - chr3_2:69666811-69666830 Msa0420890:CDS 40.0%
CATTCAAGGAATCAATGGGG+AGG - chr3_2:69661408-69661427 Msa0420890:CDS 45.0%
! AGCAATAGTGAAGTGCCATC+CGG - chr3_2:69661447-69661466 Msa0420890:CDS 45.0%
GATCATGGTAATCGACGTGA+GGG - chr3_2:69661519-69661538 Msa0420890:CDS 45.0%
TGGACGAGACATTTCAAAGC+TGG - chr3_2:69661544-69661563 Msa0420890:CDS 45.0%
ATGCATCGTGTTGAGTCACA+AGG - chr3_2:69661617-69661636 Msa0420890:CDS 45.0%
CCTTGGCAATGATGATAGGA+AGG + chr3_2:69661692-69661711 None:intergenic 45.0%
CCTTCCTATCATCATTGCCA+AGG - chr3_2:69661689-69661708 Msa0420890:CDS 45.0%
! GCAAGGGTGTAATTATCAGG+TGG + chr3_2:69661744-69661763 None:intergenic 45.0%
TAGCGCTTTGTGAAGAGCAA+GGG + chr3_2:69661760-69661779 None:intergenic 45.0%
! AAGGAGTTGACGGGTAAAAG+GGG + chr3_2:69662786-69662805 None:intergenic 45.0%
! GAAGGAGTTGACGGGTAAAA+GGG + chr3_2:69662787-69662806 None:intergenic 45.0%
TACACATTCGTACACACACG+TGG - chr3_2:69663063-69663082 Msa0420890:CDS 45.0%
TATTTGGCGGAAATCAAGGG+AGG - chr3_2:69663838-69663857 Msa0420890:intron 45.0%
ACATAACAAGTGTCCCCTTC+AGG - chr3_2:69663996-69664015 Msa0420890:intron 45.0%
CTCCCAGCTTCACAAATCAA+AGG + chr3_2:69664547-69664566 None:intergenic 45.0%
ATTTCATGGAGAGGGAACTC+AGG - chr3_2:69664586-69664605 Msa0420890:intron 45.0%
GGGAACTCAGGTTTACAAGA+TGG - chr3_2:69664598-69664617 Msa0420890:intron 45.0%
ATGGGATGCAGAACTGTTGA+AGG + chr3_2:69664824-69664843 None:intergenic 45.0%
!! TAGGTTGGTGGATCACTGAA+TGG - chr3_2:69665201-69665220 Msa0420890:intron 45.0%
GTGGATCACTGAATGGTTCT+AGG - chr3_2:69665208-69665227 Msa0420890:intron 45.0%
CACCAGATGATCACTACTGT+TGG - chr3_2:69665232-69665251 Msa0420890:intron 45.0%
TGCCAACAGTAGTGATCATC+TGG + chr3_2:69665237-69665256 None:intergenic 45.0%
! AATACAGTTGTTGTTGGGCG+TGG + chr3_2:69665282-69665301 None:intergenic 45.0%
TTTGATGAGTACATGTGGGG+TGG - chr3_2:69665501-69665520 Msa0420890:intron 45.0%
! GCTTGGTTGTATTTTGCCAC+TGG - chr3_2:69665525-69665544 Msa0420890:intron 45.0%
!! CACATCAGGATTAGTTGCCA+AGG + chr3_2:69665568-69665587 None:intergenic 45.0%
CTGCAATGTTGCTGCTAACA+AGG - chr3_2:69665658-69665677 Msa0420890:intron 45.0%
TGTTGCTGCTAACAAGGGTT+AGG - chr3_2:69665664-69665683 Msa0420890:intron 45.0%
ATACCATCCAGGAACACCTT+TGG + chr3_2:69665984-69666003 None:intergenic 45.0%
TTAGGACCACAATACCATCC+AGG + chr3_2:69665995-69666014 None:intergenic 45.0%
!! AAAGGCATTTGCAACCTCTC+AGG - chr3_2:69666036-69666055 Msa0420890:intron 45.0%
TGACGAATTTGGTACCTGAG+AGG + chr3_2:69666053-69666072 None:intergenic 45.0%
! ATTACTCATGCACTGGTGGT+TGG - chr3_2:69666629-69666648 Msa0420890:CDS 45.0%
ATTACAGGAGCAATGGTTGG+AGG - chr3_2:69666688-69666707 Msa0420890:CDS 45.0%
CCTGCATTTCCAGCTAAAGT+TGG + chr3_2:69666769-69666788 None:intergenic 45.0%
CCAACTTTAGCTGGAAATGC+AGG - chr3_2:69666766-69666785 Msa0420890:CDS 45.0%
!! GGATTTTCTGGTCCAAATGG+TGG + chr3_2:69666868-69666887 None:intergenic 45.0%
!! GGTGGATTTTCTGGTCCAAA+TGG + chr3_2:69666871-69666890 None:intergenic 45.0%
TGCCTTGTCCCATTGATCTC+CGG + chr3_2:69661490-69661509 None:intergenic 50.0%
CGATCATGGTAATCGACGTG+AGG - chr3_2:69661518-69661537 Msa0420890:CDS 50.0%
TGGTAATCGACGTGAGGGAT+TGG - chr3_2:69661524-69661543 Msa0420890:CDS 50.0%
GTAGCGCTTTGTGAAGAGCA+AGG + chr3_2:69661761-69661780 None:intergenic 50.0%
CAAGGGTCGGGTTTAAACTC+TGG + chr3_2:69662351-69662370 None:intergenic 50.0%
! GGAAGGAGTTGACGGGTAAA+AGG + chr3_2:69662788-69662807 None:intergenic 50.0%
TACCCGTCAACTCCTTCCAA+AGG - chr3_2:69662790-69662809 Msa0420890:CDS 50.0%
! AGCCTTTGGAAGGAGTTGAC+GGG + chr3_2:69662795-69662814 None:intergenic 50.0%
! CAGCCTTTGGAAGGAGTTGA+CGG + chr3_2:69662796-69662815 None:intergenic 50.0%
GCGGAAATCAAGGGAGGTAA+TGG - chr3_2:69663844-69663863 Msa0420890:intron 50.0%
GGGAGATTGCCAAAGAGCAA+TGG - chr3_2:69664562-69664581 Msa0420890:intron 50.0%
CGTGGATAGCTCATGTCTTC+TGG + chr3_2:69665264-69665283 None:intergenic 50.0%
TTTGAAGGACCTGACCTTGC+AGG - chr3_2:69665300-69665319 Msa0420890:intron 50.0%
ACCTGACCTTGCAGGAGAAA+TGG - chr3_2:69665308-69665327 Msa0420890:intron 50.0%
GTTAGCAGCAACATTGCAGC+CGG + chr3_2:69665657-69665676 None:intergenic 50.0%
GGAGAGATTGTGGTTGTCCA+TGG + chr3_2:69665907-69665926 None:intergenic 50.0%
!! ATGGAAGCCAAAGGTGTTCC+TGG - chr3_2:69665974-69665993 Msa0420890:intron 50.0%
!! AAGCCAAAGGTGTTCCTGGA+TGG - chr3_2:69665978-69665997 Msa0420890:intron 50.0%
GGTGTTCCTGGATGGTATTG+TGG - chr3_2:69665986-69666005 Msa0420890:intron 50.0%
TGTCCCATTGATCTCCGGTG+CGG + chr3_2:69661485-69661504 None:intergenic 55.0%
CACCGGAGATCAATGGGACA+AGG - chr3_2:69661485-69661504 Msa0420890:CDS 55.0%
AAGGCAGCGTTGCTCGATCA+TGG - chr3_2:69661504-69661523 Msa0420890:CDS 55.0%
CGTCAACTCCTTCCAAAGGC+TGG - chr3_2:69662794-69662813 Msa0420890:CDS 55.0%
GCCATTTCTCCTGCAAGGTC+AGG + chr3_2:69665312-69665331 None:intergenic 55.0%
! CTGCTGCCATTTCTCCTGCA+AGG + chr3_2:69665317-69665336 None:intergenic 55.0%
AGTACATGTGGGGTGGTGCT+TGG - chr3_2:69665508-69665527 Msa0420890:intron 55.0%
! CATGCACTGGTGGTTGGAAG+TGG - chr3_2:69666635-69666654 Msa0420890:CDS 55.0%
!!! GGTGGTGGAGGTGGATTTTC+TGG + chr3_2:69666880-69666899 None:intergenic 55.0%
CATGGTTTCCAAGGAGGTGG+TGG + chr3_2:69666895-69666914 None:intergenic 55.0%
CAGCCGCACCGGAGATCAAT+GGG - chr3_2:69661479-69661498 Msa0420890:CDS 60.0%
ATCCACCTCCACCACCTCCT+TGG - chr3_2:69666884-69666903 Msa0420890:CDS 60.0%
!! TTCCAAGGAGGTGGTGGAGG+TGG + chr3_2:69666889-69666908 None:intergenic 60.0%
! GGTTTCCAAGGAGGTGGTGG+AGG + chr3_2:69666892-69666911 None:intergenic 60.0%
!! CGGCTGGTCTCATCACCGGA+TGG + chr3_2:69661465-69661484 None:intergenic 65.0%
!! GGTGCGGCTGGTCTCATCAC+CGG + chr3_2:69661469-69661488 None:intergenic 65.0%
GGTGATGAGACCAGCCGCAC+CGG - chr3_2:69661468-69661487 Msa0420890:CDS 65.0%
CCATTGATCTCCGGTGCGGC+TGG + chr3_2:69661481-69661500 None:intergenic 65.0%
CCAGCCGCACCGGAGATCAA+TGG - chr3_2:69661478-69661497 Msa0420890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 69661405 69666915 69661405 ID=Msa0420890;Name=Msa0420890
chr3_2 mRNA 69661405 69666915 69661405 ID=Msa0420890-mRNA-1;Parent=Msa0420890;Name=Msa0420890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|635
chr3_2 exon 69666519 69666915 69666519 ID=Msa0420890-mRNA-1:exon:16585;Parent=Msa0420890-mRNA-1
chr3_2 exon 69663456 69663760 69663456 ID=Msa0420890-mRNA-1:exon:16584;Parent=Msa0420890-mRNA-1
chr3_2 exon 69662519 69663116 69662519 ID=Msa0420890-mRNA-1:exon:16583;Parent=Msa0420890-mRNA-1
chr3_2 exon 69662263 69662435 69662263 ID=Msa0420890-mRNA-1:exon:16582;Parent=Msa0420890-mRNA-1
chr3_2 exon 69661405 69661839 69661405 ID=Msa0420890-mRNA-1:exon:16581;Parent=Msa0420890-mRNA-1
chr3_2 CDS 69666519 69666915 69666519 ID=Msa0420890-mRNA-1:cds;Parent=Msa0420890-mRNA-1
chr3_2 CDS 69663456 69663760 69663456 ID=Msa0420890-mRNA-1:cds;Parent=Msa0420890-mRNA-1
chr3_2 CDS 69662519 69663116 69662519 ID=Msa0420890-mRNA-1:cds;Parent=Msa0420890-mRNA-1
chr3_2 CDS 69662263 69662435 69662263 ID=Msa0420890-mRNA-1:cds;Parent=Msa0420890-mRNA-1
chr3_2 CDS 69661405 69661839 69661405 ID=Msa0420890-mRNA-1:cds;Parent=Msa0420890-mRNA-1
Gene Sequence

>Msa0420890

ATGCATTCAAGGAATCAATGGGGAGGGTCTTTCGAGCTGAGCAGCAATAGTGAAGTGCCATCCGGTGATGAGACCAGCCGCACCGGAGATCAATGGGACAAGGCAGCGTTGCTCGATCATGGTAATCGACGTGAGGGATTGGACGAGACATTTCAAAGCTGGATTCTTGAAAGGCCAAATATGAAGAAGAAGACCAAGTATGTGGATTTTGGATGCATCGTGTTGAGTCACAAGGCATTGAAATGGATTTTTGGTACAATCTTTGTGGCTTTTTGTGTAATTGGCCTTCCTATCATCATTGCCAAGGTTTTGCCTAAACATCATTCTTCACCTACACCACCTGATAATTACACCCTTGCTCTTCACAAAGCGCTACGCTTCTTCAATGCTCAGAAATCTGGGAGATTGCCAAAGAGCAATGGAATTTCATGGAGAGGGAACTCAGGTTTACAAGATGGAAAAGACACCGATGATAAAAAAGGACTTGTTGGTGGTTATTATGATGCAGGGGACAATATAAAGTTCCATTTTCCCATGTCTTTTGCTATGACAATGCTAAGCTGGAGTGTGCTTGAATATAAACAAAAATACATGGCAGTTAATGAGTATGATCATGCCAGAGAACTCATTAAATGGGGTACTGATTATTTGCTCTTAACCTTCAACAGTTCTGCATCCCATATTAACAAAATTTATGCTCAGGTTGGTGGATCACTGAATGGTTCTAGGACACCAGATGATCACTACTGTTGGCAAAAACCAGAAGACATGAGCTATCCACGCCCAACAACAACTGTATTTGAAGGACCTGACCTTGCAGGAGAAATGGCAGCAGCATTAGCAGCAGCTTCTATAGTTTTCCTAGACGATGCTGCTTATTCAAAGAAACTCGTCAAGGGAGCTGAAACTGCCTTTGCATTTGCAAGAGACTTTGGTAAAAGATCAACATACAGTCGCGGAAAGCCTTACATTGAACCTTTTTATAACTCATCCGGTTACTTTGATGAGTACATGTGGGGTGGTGCTTGGTTGTATTTTGCCACTGGAAATACTACCTACATTTCCTTGGCAACTAATCCTGATGTGCCTAAGAATTCCAAGGCATTTTATATGAAGCCTGATTTGAGTGTTTTGAGTTGGGATAATAAGTTACCGGCTGCAATGTTGCTGCTAACAAGGGTTAGGATGTTTCTTAATCCTGGTTACCCTTATGAGGATATGCTTAGTATGTACCATAATGTTACTAGTCTTACCATGTGCTCTTATCTTCATCAATTCAATGTCTTTAACTGGACTAAAGGGGGGTTGATACAATTGAACCATGGACAACCACAATCTCTCCAATATGTTGTCAATGCTGCATTTTTGGCATCTCTTTTTGCTGATTATATGGAAGCCAAAGGTGTTCCTGGATGGTATTGTGGTCCTAATTTCTTTCCAATATCTGTTCTAAAGGCATTTGCAACCTCTCAGCAATGTGATTTTTGTTATATTCCCATGAAACAGATGGATTACATCATGGGTAAAAATCCAATGAACATGAGCTACATAGTAGGATATGGCAAAAAGTTTCCAAGACATGTTCATCATAGAGGTGCTTCGATTCCAAATGATCACAAAAATTACTCATGCACTGGTGGTTGGAAGTGGCGTGACAGCCCTAACCGAAATCCTAACAACATTACAGGAGCAATGGTTGGAGGACCAAATAGTTTTGACCAATTTCATGATTCAAGGAAAAATTACAACTATACTGAACCAACTTTAGCTGGAAATGCAGGACTAGTAGCTGCCTTAATTTCCTTAACAAGCACAACAGGTAGTGGCCTTGACGTTAATACCATTTTTGAAGCTATTCCACCATTTGGACCAGAAAATCCACCTCCACCACCTCCTTGGAAACCATGA

Protein sequence

>Msa0420890

MHSRNQWGGSFELSSNSEVPSGDETSRTGDQWDKAALLDHGNRREGLDETFQSWILERPNMKKKTKYVDFGCIVLSHKALKWIFGTIFVAFCVIGLPIIIAKVLPKHHSSPTPPDNYTLALHKALRFFNAQKSGRLPKSNGISWRGNSGLQDGKDTDDKKGLVGGYYDAGDNIKFHFPMSFAMTMLSWSVLEYKQKYMAVNEYDHARELIKWGTDYLLLTFNSSASHINKIYAQVGGSLNGSRTPDDHYCWQKPEDMSYPRPTTTVFEGPDLAGEMAAALAAASIVFLDDAAYSKKLVKGAETAFAFARDFGKRSTYSRGKPYIEPFYNSSGYFDEYMWGGAWLYFATGNTTYISLATNPDVPKNSKAFYMKPDLSVLSWDNKLPAAMLLLTRVRMFLNPGYPYEDMLSMYHNVTSLTMCSYLHQFNVFNWTKGGLIQLNHGQPQSLQYVVNAAFLASLFADYMEAKGVPGWYCGPNFFPISVLKAFATSQQCDFCYIPMKQMDYIMGKNPMNMSYIVGYGKKFPRHVHHRGASIPNDHKNYSCTGGWKWRDSPNRNPNNITGAMVGGPNSFDQFHDSRKNYNYTEPTLAGNAGLVAALISLTSTTGSGLDVNTIFEAIPPFGPENPPPPPPWKP*