AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493550 MtrunA17_Chr3g0087261 90.784 510 23 1 14 499 1 510 0.0 949
Msa0493550 MtrunA17_Chr3g0087271 78.082 511 87 2 14 499 1 511 0.0 803
Msa0493550 MtrunA17_Chr6g0482131 53.027 479 195 4 49 498 35 512 0.0 527
Msa0493550 MtrunA17_Chr2g0329321 53.015 481 218 4 21 498 13 488 0.0 527
Msa0493550 MtrunA17_Chr4g0033311 51.367 512 215 6 20 498 5 515 0.0 521
Msa0493550 MtrunA17_Chr2g0329201 51.690 503 212 5 26 498 6 507 0.0 519
Msa0493550 MtrunA17_Chr4g0033321 51.683 505 212 5 23 496 4 507 5.99e-180 514
Msa0493550 MtrunA17_Chr4g0033401 51.581 506 212 5 23 496 4 508 1.48e-178 511
Msa0493550 MtrunA17_Chr6g0482081 51.277 509 215 5 20 496 4 511 3.86e-178 510
Msa0493550 MtrunA17_Chr4g0033201 47.953 513 235 5 17 498 1 512 1.11e-177 509
Msa0493550 MtrunA17_Chr3g0088441 51.176 510 216 6 21 498 6 514 6.07e-177 508
Msa0493550 MtrunA17_Chr2g0329191 51.464 478 205 3 48 498 32 509 1.51e-176 506
Msa0493550 MtrunA17_Chr4g0033331 51.724 493 208 4 33 496 22 513 1.35e-174 501
Msa0493550 MtrunA17_Chr6g0482071 50.099 507 217 6 21 498 14 513 1.85e-174 501
Msa0493550 MtrunA17_Chr4g0033271 48.638 514 232 5 14 498 1 511 3.55e-174 500
Msa0493550 MtrunA17_Chr4g0033341 50.884 509 215 7 20 498 40 543 2.39e-173 499
Msa0493550 MtrunA17_Chr4g0033191 49.170 482 215 4 46 498 39 519 2.58e-172 496
Msa0493550 MtrunA17_Chr4g0010501 49.895 477 209 2 48 498 22 494 4.17e-171 491
Msa0493550 MtrunA17_Chr5g0430451 51.527 491 225 4 21 498 8 498 5.67e-170 489
Msa0493550 MtrunA17_Chr6g0482941 47.714 503 232 7 22 498 15 512 1.79e-159 462
Msa0493550 MtrunA17_Chr4g0043091 45.582 498 240 5 27 496 7 501 4.20e-159 461
Msa0493550 MtrunA17_Chr6g0482951 47.515 503 233 7 22 498 15 512 2.57e-158 459
Msa0493550 MtrunA17_Chr4g0033261 45.294 510 222 4 21 498 9 493 1.35e-157 457
Msa0493550 MtrunA17_Chr4g0033231 45.021 482 211 3 46 498 37 493 2.42e-151 441
Msa0493550 MtrunA17_Chr4g0042171 45.607 478 228 6 49 496 23 498 3.23e-147 431
Msa0493550 MtrunA17_Chr3g0090131 42.769 484 238 6 43 499 14 485 9.32e-142 416
Msa0493550 MtrunA17_Chr4g0074561 44.421 475 229 5 55 497 40 511 2.27e-139 412
Msa0493550 MtrunA17_Chr3g0090111 41.561 474 241 4 51 499 20 482 2.46e-138 407
Msa0493550 MtrunA17_Chr2g0288071 42.205 526 262 6 7 498 25 542 1.39e-136 405
Msa0493550 MtrunA17_Chr2g0288021 43.697 476 238 4 49 496 34 507 9.51e-136 402
Msa0493550 MtrunA17_Chr4g0074551 42.300 513 258 5 14 498 22 524 5.16e-134 399
Msa0493550 MtrunA17_Chr7g0242691 42.604 507 243 10 20 498 9 495 7.11e-134 397
Msa0493550 MtrunA17_Chr2g0317841 41.929 477 244 5 49 496 31 503 9.63e-134 397
Msa0493550 MtrunA17_Chr4g0006131 43.787 507 213 10 32 496 23 499 1.33e-133 396
Msa0493550 MtrunA17_Chr2g0317821 41.474 475 249 4 49 496 31 503 2.22e-132 394
Msa0493550 MtrunA17_Chr4g0006111 42.449 490 216 6 48 498 63 525 6.09e-132 392
Msa0493550 MtrunA17_Chr4g0006971 41.807 476 237 8 49 496 26 489 3.38e-130 388
Msa0493550 MtrunA17_Chr7g0242681 42.116 482 235 11 44 496 33 499 1.25e-125 377
Msa0493550 MtrunA17_Chr1g0195611 41.004 478 234 9 50 496 27 487 2.96e-118 357
Msa0493550 MtrunA17_Chr3g0087201 49.697 330 161 2 168 496 17 342 1.80e-117 349
Msa0493550 MtrunA17_Chr5g0428831 39.406 505 251 10 22 496 9 488 1.04e-116 353
Msa0493550 MtrunA17_Chr2g0301231 44.737 418 168 6 118 498 1 392 1.07e-113 341
Msa0493550 MtrunA17_Chr5g0418871 47.321 336 148 4 71 378 4 338 7.87e-104 314
Msa0493550 MtrunA17_Chr7g0234091 37.474 475 253 7 51 498 76 533 1.90e-101 315
Msa0493550 MtrunA17_Chr7g0234131 37.263 475 251 8 51 496 76 532 8.15e-100 310
Msa0493550 MtrunA17_Chr7g0234111 37.684 475 248 7 51 496 76 531 8.73e-100 310
Msa0493550 MtrunA17_Chr1g0195641 41.013 395 192 6 49 413 26 409 4.51e-99 304
Msa0493550 MtrunA17_Chr7g0230651 39.276 359 174 6 106 436 27 369 2.10e-77 247
Msa0493550 MtrunA17_Chr7g0227561 43.388 242 129 3 52 292 48 282 2.09e-65 213
Msa0493550 MtrunA17_Chr7g0236731 42.925 212 106 2 141 347 57 258 3.83e-51 176
Msa0493550 MtrunA17_Chr3g0087191 55.862 145 38 1 48 166 20 164 1.05e-46 160
Msa0493550 MtrunA17_Chr4g0068871 25.420 417 216 10 114 499 183 535 6.51e-24 105
Msa0493550 MtrunA17_Chr8g0352881 45.631 103 55 1 249 351 57 158 9.88e-23 94.7
Msa0493550 MtrunA17_Chr8g0352881 49.091 55 27 1 58 112 6 59 9.70e-11 60.5
Msa0493550 MtrunA17_Chr5g0418861 51.807 83 39 1 415 496 8 90 1.92e-22 91.7
Msa0493550 MtrunA17_Chr2g0288031 55.932 59 26 0 177 235 5 63 2.40e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493550 AT2G44480.1 51.681 476 203 2 48 496 33 508 3.16e-180 516
Msa0493550 AT2G44480.3 51.681 476 203 2 48 496 64 539 1.09e-179 515
Msa0493550 AT2G44450.1 49.061 479 213 3 45 496 26 500 1.03e-163 473
Msa0493550 AT5G44640.1 47.000 500 233 4 25 496 6 501 3.21e-163 472
Msa0493550 AT5G42260.1 47.782 496 227 4 25 492 6 497 5.78e-163 471
Msa0493550 AT3G60130.1 49.072 485 210 7 45 499 25 502 3.72e-156 454
Msa0493550 AT1G26560.1 47.490 478 221 5 48 496 30 506 4.02e-154 449
Msa0493550 AT3G18080.1 47.182 479 219 6 48 498 37 509 2.85e-152 444
Msa0493550 AT5G54570.1 46.444 478 225 5 49 496 29 505 1.33e-150 441
Msa0493550 AT2G25630.1 44.646 495 225 5 30 496 10 483 1.53e-149 436
Msa0493550 AT3G18070.1 45.756 483 226 7 44 498 24 498 3.25e-148 434
Msa0493550 AT3G18070.3 45.549 483 221 7 44 498 24 492 5.18e-148 433
Msa0493550 AT2G44480.2 50.000 406 176 2 118 496 1 406 1.20e-146 426
Msa0493550 AT5G24550.1 44.906 481 232 7 50 498 32 511 7.93e-145 426
Msa0493550 AT1G61820.1 44.770 478 234 4 48 496 28 504 8.66e-142 418
Msa0493550 AT3G60140.1 44.075 481 237 6 49 498 25 504 3.35e-140 416
Msa0493550 AT1G47600.2 43.434 495 240 7 34 498 26 510 5.78e-140 413
Msa0493550 AT1G47600.1 43.636 495 240 8 34 498 26 511 3.98e-139 410
Msa0493550 AT5G25980.2 44.336 512 239 12 25 496 17 522 3.94e-137 407
Msa0493550 AT1G51470.1 43.434 495 241 8 34 498 26 511 5.47e-137 405
Msa0493550 AT5G24540.1 45.114 481 231 7 50 498 32 511 8.36e-137 405
Msa0493550 AT2G44470.3 41.517 501 260 8 30 498 8 507 7.77e-134 400
Msa0493550 AT3G60120.1 42.887 485 244 8 45 498 9 491 1.40e-132 395
Msa0493550 AT2G32860.2 43.249 474 236 7 55 496 99 571 2.94e-132 397
Msa0493550 AT5G26000.1 43.160 519 251 11 14 496 1 511 4.41e-132 394
Msa0493550 AT1G61810.1 41.502 506 263 5 20 496 6 507 7.46e-132 392
Msa0493550 AT1G02850.2 42.526 475 230 7 50 496 26 485 1.50e-130 388
Msa0493550 AT2G32860.1 42.918 473 238 7 55 496 99 570 3.67e-130 391
Msa0493550 AT2G44490.1 41.224 490 253 8 40 496 5 492 1.19e-129 388
Msa0493550 AT3G60130.2 48.565 418 178 7 112 499 40 450 4.17e-129 383
Msa0493550 AT5G36890.2 41.226 473 241 5 51 496 17 479 1.01e-128 383
Msa0493550 AT5G36890.1 41.226 473 241 5 51 496 17 479 1.79e-128 383
Msa0493550 AT5G54570.3 45.283 424 202 4 49 443 29 451 1.24e-127 379
Msa0493550 AT1G61810.3 43.043 460 232 4 53 483 36 494 1.33e-127 382
Msa0493550 AT4G21760.2 41.949 472 239 6 55 498 59 523 1.81e-127 382
Msa0493550 AT1G02850.5 40.763 498 229 8 50 496 26 508 4.55e-126 378
Msa0493550 AT1G66280.1 41.292 511 263 9 21 499 8 513 1.11e-125 377
Msa0493550 AT2G44460.1 42.116 501 253 9 30 496 7 504 2.01e-125 378
Msa0493550 AT5G54570.2 45.966 409 190 5 118 496 1 408 2.19e-125 373
Msa0493550 AT2G44450.2 50.708 353 169 2 145 496 1 349 3.59e-125 369
Msa0493550 AT1G02850.4 40.681 499 229 9 50 496 26 509 2.95e-124 373
Msa0493550 AT3G21370.1 40.535 486 251 9 49 499 32 514 4.54e-124 373
Msa0493550 AT4G27830.1 39.448 507 252 11 22 496 1 484 3.47e-123 370
Msa0493550 AT1G66270.1 41.856 485 244 9 48 499 34 513 3.76e-123 370
Msa0493550 AT1G66270.2 42.029 483 244 9 48 499 34 511 8.30e-123 369
Msa0493550 AT2G44480.4 57.051 312 107 2 48 333 64 374 2.50e-122 363
Msa0493550 AT3G60130.3 47.368 418 172 8 112 499 40 439 8.04e-122 364
Msa0493550 AT1G75940.1 41.770 486 245 9 50 499 37 520 3.25e-121 366
Msa0493550 AT4G27820.1 41.458 480 230 9 49 496 22 482 4.27e-121 364
Msa0493550 AT3G03640.1 40.649 524 262 10 13 498 2 514 1.04e-120 364
Msa0493550 AT3G09260.1 40.239 502 265 9 29 499 16 513 1.15e-120 364
Msa0493550 AT4G21760.1 40.890 472 234 7 55 498 59 513 3.81e-120 363
Msa0493550 AT5G25980.3 43.326 457 215 10 25 443 17 467 1.43e-119 359
Msa0493550 AT5G25980.1 43.326 457 215 10 25 443 17 467 1.43e-119 359
Msa0493550 AT3G18070.2 42.048 459 201 7 44 498 24 421 7.22e-119 356
Msa0493550 AT4G22100.1 41.139 474 237 7 51 496 23 482 3.93e-118 357
Msa0493550 AT1G02850.1 40.632 475 212 8 50 496 26 458 4.16e-118 355
Msa0493550 AT1G52400.3 39.922 516 260 10 21 496 10 515 1.08e-117 356
Msa0493550 AT1G52400.1 39.922 516 260 10 21 496 10 515 1.08e-117 356
Msa0493550 AT1G45191.6 41.494 482 231 9 50 496 29 494 2.60e-117 355
Msa0493550 AT1G60090.2 41.632 478 229 9 50 496 24 482 6.19e-117 353
Msa0493550 AT1G60090.1 40.541 481 237 7 50 496 24 489 1.82e-116 353
Msa0493550 AT1G45191.4 41.042 480 225 9 50 496 29 483 2.89e-116 352
Msa0493550 AT1G45191.1 41.104 489 235 9 50 496 29 506 3.06e-116 353
Msa0493550 AT1G45191.2 41.458 480 229 9 50 496 29 489 3.86e-116 352
Msa0493550 AT3G62750.2 38.050 523 257 12 4 496 14 499 1.02e-115 351
Msa0493550 AT3G62750.1 39.000 500 242 11 27 496 7 473 1.97e-115 350
Msa0493550 AT5G28510.1 37.695 512 281 8 24 499 13 522 2.09e-115 351
Msa0493550 AT5G24540.2 44.575 424 203 6 50 442 32 454 1.92e-114 345
Msa0493550 AT5G26000.2 42.026 464 227 9 14 443 1 456 8.91e-114 344
Msa0493550 AT1G61820.3 45.902 366 193 3 135 496 1 365 2.66e-112 337
Msa0493550 AT2G44470.1 39.865 444 235 7 30 442 8 450 1.80e-110 335
Msa0493550 AT1G61810.4 43.782 386 188 3 51 407 34 419 5.46e-109 330
Msa0493550 AT1G61810.5 42.222 405 204 4 121 496 4 407 7.58e-109 330
Msa0493550 AT3G60140.2 42.931 389 191 5 49 407 25 412 1.27e-107 328
Msa0493550 AT3G18070.4 47.384 344 148 5 44 359 24 362 1.13e-106 323
Msa0493550 AT2G44480.5 48.837 301 153 1 197 496 2 302 4.07e-105 317
Msa0493550 AT1G02850.3 41.422 408 180 6 50 407 26 424 7.11e-105 320
Msa0493550 AT3G62740.1 36.897 477 252 9 49 496 22 478 2.29e-103 318
Msa0493550 AT3G62750.4 37.580 471 228 11 4 445 14 447 7.45e-101 311
Msa0493550 AT4G27830.2 39.024 410 205 8 118 496 1 396 1.39e-98 303
Msa0493550 AT5G48375.1 39.381 452 188 9 34 461 22 411 9.62e-98 302
Msa0493550 AT1G52400.2 38.829 461 233 9 21 442 10 460 1.83e-97 302
Msa0493550 AT2G44470.2 43.529 340 162 5 30 340 8 346 6.02e-96 296
Msa0493550 AT3G18070.7 46.497 314 159 4 189 498 1 309 1.48e-95 292
Msa0493550 AT4G27820.2 39.951 408 199 8 121 496 4 397 5.46e-95 294
Msa0493550 AT4G27820.3 39.951 408 199 8 121 496 4 397 5.46e-95 294
Msa0493550 AT2G44460.2 45.000 360 190 6 143 496 1 358 1.37e-94 294
Msa0493550 AT1G45191.3 42.623 366 166 5 50 381 29 384 6.44e-92 286
Msa0493550 AT1G60270.1 43.149 343 164 3 50 365 24 362 1.23e-91 284
Msa0493550 AT1G45191.5 43.516 347 160 3 50 365 29 370 4.56e-91 284
Msa0493550 AT3G18070.5 41.734 369 153 5 44 408 24 334 5.97e-91 281
Msa0493550 AT3G62740.2 39.018 387 194 7 49 407 22 394 1.22e-90 283
Msa0493550 AT3G62750.7 39.892 371 174 6 27 368 7 357 1.94e-89 278
Msa0493550 AT3G62750.8 39.892 371 174 6 27 368 7 357 1.94e-89 278
Msa0493550 AT3G62750.6 37.897 409 203 9 118 496 1 388 1.11e-88 278
Msa0493550 AT3G62750.5 37.897 409 203 9 118 496 1 388 1.11e-88 278
Msa0493550 AT3G62750.3 39.516 372 177 6 18 360 23 375 2.58e-88 278
Msa0493550 AT1G61810.2 47.566 267 115 1 51 292 34 300 2.60e-81 255
Msa0493550 AT1G51490.1 40.173 346 158 9 58 370 28 357 1.55e-72 236
Msa0493550 AT1G60270.2 42.857 273 129 2 120 365 3 275 5.54e-70 225
Msa0493550 AT3G18070.6 47.768 224 111 2 189 408 1 222 9.47e-68 218
Msa0493550 AT5G16580.1 39.236 288 156 5 170 453 27 299 1.98e-56 190
Msa0493550 AT3G06510.1 24.533 428 220 12 107 499 153 512 1.66e-20 95.5

Find 118 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACAAAGATATCATAATT+TGG 0.153192 3_4:+18739718 None:intergenic
GCCATTAAGCATTACATAAT+TGG 0.185949 3_4:+18737782 None:intergenic
ACCAATTATGTAATGCTTAA+TGG 0.213587 3_4:-18737783 Msa0493550:three_prime_UTR
GAATTCGGAGGTTAAGATTT+AGG 0.225852 3_4:-18737390 Msa0493550:three_prime_UTR
CCAGTGTACATTACTGAAAA+TGG 0.258317 3_4:-18738992 Msa0493550:intron
CTCAAGGTGGTGAAAGAAAT+TGG 0.260524 3_4:-18742457 Msa0493550:CDS
AGAGAAAATCATGAGGAAAA+AGG 0.269873 3_4:+18743790 None:intergenic
TTTCATTCTCTAGCAACTTA+AGG 0.275153 3_4:-18737707 Msa0493550:three_prime_UTR
AGCTCTTGAAGATGAATATA+AGG 0.279995 3_4:-18741875 Msa0493550:CDS
ATGGGAGGGGACCAAGTATA+TGG 0.281964 3_4:-18742979 Msa0493550:CDS
ATATCATAATTTGGGGATAA+TGG 0.289010 3_4:+18739727 None:intergenic
ATGGTTGAGCAGATAAGATT+TGG 0.289096 3_4:-18742645 Msa0493550:intron
CAACAAAGATATCATAATTT+GGG 0.295754 3_4:+18739719 None:intergenic
TTCATATGTATTGAGATAAT+TGG 0.297420 3_4:-18737810 Msa0493550:three_prime_UTR
TCAGCAACACTATTGGAATA+TGG 0.298995 3_4:+18740199 None:intergenic
CAATAGTGTTGCTGATAAAA+AGG 0.301935 3_4:-18740191 Msa0493550:CDS
ATTTCATAGGCTCATCAAAA+AGG 0.305623 3_4:-18740259 Msa0493550:intron
CCAAATTATGATATCTTTGT+TGG 0.310176 3_4:-18739718 Msa0493550:CDS
AGATGTCACTACTTCATCTT+TGG 0.314923 3_4:-18743950 Msa0493550:CDS
CCATTGATGGTGTATGAATA+AGG 0.315978 3_4:+18741485 None:intergenic
GGTAGTGGAGATGGTCATTA+TGG 0.318482 3_4:+18738780 None:intergenic
CCTTTGTAACATTGTTTCAT+TGG 0.337592 3_4:-18741909 Msa0493550:CDS
GAAGGAGCCTCAGATATAGA+TGG 0.339718 3_4:-18742998 Msa0493550:CDS
GCTTCAAGACATTTGGAGAT+AGG 0.339805 3_4:-18741535 Msa0493550:CDS
ATATTCACAGCTTAATCATT+TGG 0.349400 3_4:-18737495 Msa0493550:three_prime_UTR
TTCATTCTCTAGCAACTTAA+GGG 0.349770 3_4:-18737706 Msa0493550:three_prime_UTR
TACACCATCAATGGATATAA+TGG 0.360639 3_4:-18741476 Msa0493550:CDS
TAGCTCGTAAAGATGGTATT+AGG 0.367113 3_4:-18738811 Msa0493550:CDS
ACTCATACTTTATTCCTTCA+AGG 0.387045 3_4:+18738756 None:intergenic
CTTTGTAACATTGTTTCATT+GGG 0.391227 3_4:-18741908 Msa0493550:CDS
AATTGGTTCTTCTGCTTACC+AGG 0.392026 3_4:-18743763 Msa0493550:intron
AGTATACAAGAGAAAATATC+AGG 0.393019 3_4:-18741333 Msa0493550:intron
GTCAATATGCTTCATTCAAT+AGG 0.402198 3_4:-18743815 Msa0493550:CDS
TGGAGATAGGGTTAAGCATT+GGG 0.413839 3_4:-18741522 Msa0493550:CDS
ATTCACACCAAGAAAATCAT+AGG 0.423764 3_4:+18739644 None:intergenic
GCAGGGTACACAGTACGATT+TGG 0.425268 3_4:-18737989 Msa0493550:CDS
AATATCGATAAATAAATTGT+TGG 0.428023 3_4:-18737740 Msa0493550:three_prime_UTR
CTTCAAGACATTTGGAGATA+GGG 0.430530 3_4:-18741534 Msa0493550:CDS
TTTCAGGCATTGCTACATAT+AGG 0.439893 3_4:-18738856 Msa0493550:intron
CAAATTATGATATCTTTGTT+GGG 0.440379 3_4:-18739717 Msa0493550:CDS
TTTGCTCATCCCATTACATA+TGG 0.442795 3_4:-18739750 Msa0493550:CDS
TTGAAGAATGGTGTATCTAT+TGG 0.446784 3_4:-18739432 Msa0493550:CDS
GCTCTTGAAGATGAATATAA+GGG 0.448342 3_4:-18741874 Msa0493550:CDS
GGGATAATGGCCATATGTAA+TGG 0.452861 3_4:+18739740 None:intergenic
ACCACCATTATATCCATTGA+TGG 0.454476 3_4:+18741472 None:intergenic
ACAAGATCATGAATTCCCTT+TGG 0.455790 3_4:+18739046 None:intergenic
GGTGGTGAAAGAAATTGGTT+TGG 0.457204 3_4:-18742452 Msa0493550:CDS
TTATTCCTTCAAGGAGGTAG+TGG 0.457529 3_4:+18738765 None:intergenic
CCTTATTCATACACCATCAA+TGG 0.460986 3_4:-18741485 Msa0493550:CDS
GACAGCTATGAATGGGATGC+AGG 0.461053 3_4:-18738007 Msa0493550:CDS
TGGTTGAGCAGATAAGATTT+GGG 0.462787 3_4:-18742644 Msa0493550:intron
TTGGAGATAGGGTTAAGCAT+TGG 0.464172 3_4:-18741523 Msa0493550:CDS
GGATAATGGCCATATGTAAT+GGG 0.468368 3_4:+18739741 None:intergenic
GTCAATGTAGCTCGTAAAGA+TGG 0.471396 3_4:-18738818 Msa0493550:CDS
TCTTTACGAGCTACATTGAC+TGG 0.472609 3_4:+18738821 None:intergenic
GTGAATGTGTCCCATATACT+TGG 0.475650 3_4:+18742968 None:intergenic
CATCTCCACTACCTCCTTGA+AGG 0.477901 3_4:-18738770 Msa0493550:CDS
TTTGCAGCCATGAGAGCTAT+AGG 0.482231 3_4:-18743918 Msa0493550:CDS
AAGTTAGGATTCAGTGGAAG+GGG 0.484637 3_4:-18737344 Msa0493550:three_prime_UTR
CAGAAACTAAAGGAGCATAT+AGG 0.484638 3_4:+18737458 None:intergenic
TTCCAGTGACAACAGCCAAA+AGG 0.487795 3_4:+18743862 None:intergenic
ATTCATCTTCAAGAGCTTGT+GGG 0.498399 3_4:+18741881 None:intergenic
TATTCATCTTCAAGAGCTTG+TGG 0.500590 3_4:+18741880 None:intergenic
AAGTTATGAGCAACAATGTA+GGG 0.502836 3_4:+18741383 None:intergenic
TGGGAGGGGACCAAGTATAT+GGG 0.502889 3_4:-18742978 Msa0493550:CDS
TCCAGTGACAACAGCCAAAA+GGG 0.503504 3_4:+18743863 None:intergenic
TGAATGCAAGTAACATACTA+AGG 0.504746 3_4:+18737829 None:intergenic
GGTAGATGTTCTAAATATGT+TGG 0.506069 3_4:-18741437 Msa0493550:CDS
GCTGCAAAAGTTCCTTCTCA+AGG 0.507675 3_4:-18737906 Msa0493550:CDS
CAAGTTATGAGCAACAATGT+AGG 0.512417 3_4:+18741382 None:intergenic
TTGTGCAGACTGATTTGACT+TGG 0.516870 3_4:-18739081 Msa0493550:intron
CAATGAAACAATGTTACAAA+GGG 0.524197 3_4:+18741910 None:intergenic
TGGTGTATCTATTGGTCCCT+CGG 0.524206 3_4:-18739424 Msa0493550:intron
AAAAGTTAGGATTCAGTGGA+AGG 0.525599 3_4:-18737346 Msa0493550:three_prime_UTR
TGGTCAAATAAGTGATATCA+AGG 0.528091 3_4:-18737676 Msa0493550:intron
AAGGAGCCTCAGATATAGAT+GGG 0.528884 3_4:-18742997 Msa0493550:CDS
GGAAGGACCTATAGCTCTCA+TGG 0.533732 3_4:+18743911 None:intergenic
TTCAAAGAAGTGAGTCACTA+AGG 0.542315 3_4:+18740222 None:intergenic
TGAGTTATCATCCCTTGAGA+AGG 0.545099 3_4:+18737894 None:intergenic
TGGCTCTATGTCTATCCAAA+GGG 0.545375 3_4:-18739061 Msa0493550:CDS
GTAACATACTAAGGTGACAT+TGG 0.547315 3_4:+18737838 None:intergenic
AGCCTCAGATATAGATGGGA+GGG 0.549294 3_4:-18742993 Msa0493550:CDS
ACTCAAATTTGATCTTCACT+TGG 0.554564 3_4:-18737876 Msa0493550:three_prime_UTR
AAAGTTAGGATTCAGTGGAA+GGG 0.554982 3_4:-18737345 Msa0493550:three_prime_UTR
CTTCAAGGAGGTAGTGGAGA+TGG 0.557183 3_4:+18738771 None:intergenic
TTGAATGAAGCATATTGACT+TGG 0.557314 3_4:+18743819 None:intergenic
TTGATCACAGCATTGAAGAA+TGG 0.563467 3_4:-18739444 Msa0493550:intron
GAATATTCTTGACCATGAGA+TGG 0.567125 3_4:+18742414 None:intergenic
CTCCTACATTACCACTGCTA+TGG 0.568763 3_4:+18742620 None:intergenic
CTGCAAAAGTTCCTTCTCAA+GGG 0.569967 3_4:-18737905 Msa0493550:CDS
TATGTTGGAAATTGCACCAC+TGG 0.570253 3_4:-18741422 Msa0493550:CDS
TTGGCTCTATGTCTATCCAA+AGG 0.570642 3_4:-18739062 Msa0493550:CDS
CCAATGAAACAATGTTACAA+AGG 0.572524 3_4:+18741909 None:intergenic
GCCTCAGATATAGATGGGAG+GGG 0.572757 3_4:-18742992 Msa0493550:CDS
TGCATCCCATTCATAGCTGT+CGG 0.573399 3_4:+18738009 None:intergenic
CAATTTCTTTCACCACCTTG+AGG 0.574734 3_4:+18742458 None:intergenic
ATGTGAAGGGCTACTATGCA+TGG 0.578020 3_4:-18738039 Msa0493550:CDS
TCCCCTCCCATCTATATCTG+AGG 0.583431 3_4:+18742991 None:intergenic
CTCTGTACTTGAGTCACCAG+TGG 0.583696 3_4:+18741406 None:intergenic
ACATTCACTAAACAAAATCC+AGG 0.587307 3_4:-18742953 Msa0493550:intron
CATACAGATTCTCCATCTCA+TGG 0.592212 3_4:-18742426 Msa0493550:CDS
CATTCTCTAGCAACTTAAGG+GGG 0.593786 3_4:-18737704 Msa0493550:three_prime_UTR
CTTGAAGCAAAAGTCAGCAT+AGG 0.597897 3_4:+18741550 None:intergenic
GACCATAGCAGTGGTAATGT+AGG 0.599218 3_4:-18742622 Msa0493550:CDS
TCATTCTCTAGCAACTTAAG+GGG 0.614339 3_4:-18737705 Msa0493550:three_prime_UTR
CAGACATGGTGCAAATGTGA+AGG 0.623231 3_4:-18738053 Msa0493550:CDS
AACAAAGATATCATAATTTG+GGG 0.628062 3_4:+18739720 None:intergenic
ACAGCTATGAATGGGATGCA+GGG 0.632968 3_4:-18738006 Msa0493550:CDS
ACATATTTAGAACATCTACC+AGG 0.648943 3_4:+18741440 None:intergenic
ACCATCAATGGATATAATGG+TGG 0.653634 3_4:-18741473 Msa0493550:CDS
GAGCCTCAGATATAGATGGG+AGG 0.661750 3_4:-18742994 Msa0493550:CDS
ACTGCTTTGTGCATAATATG+TGG 0.670752 3_4:+18739614 None:intergenic
GAAGTCAAGTGCTCGACCTG+CGG 0.671667 3_4:+18740168 None:intergenic
CATACTTTATTCCTTCAAGG+AGG 0.672177 3_4:+18738759 None:intergenic
ATTCCAAAGAGAAAATCATG+AGG 0.675686 3_4:+18743783 None:intergenic
AAGATTTGGGACCATAGCAG+TGG 0.678867 3_4:-18742631 Msa0493550:CDS
AGACATGGTGCAAATGTGAA+GGG 0.689499 3_4:-18738052 Msa0493550:CDS
TTTGTAGGAAGACCTCAAGG+TGG 0.734404 3_4:-18742470 Msa0493550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTTTTAAAAATTTA+AGG - chr3_4:18743932-18743951 Msa0493550:CDS 0.0%
!!! AATATTTTTTAAAAATTTAA+GGG - chr3_4:18743933-18743952 Msa0493550:CDS 0.0%
!! ATTAAAATCTAAAAATAAGT+TGG - chr3_4:18738139-18738158 Msa0493550:intron 10.0%
!! AAATCAATGAAAAATAAATA+GGG + chr3_4:18738421-18738440 None:intergenic 10.0%
!!! TATCTTTTTTTTTTTTTTTG+AGG - chr3_4:18738973-18738992 Msa0493550:intron 10.0%
!!! ATCTTTTTTTTTTTTTTTGA+GGG - chr3_4:18738974-18738993 Msa0493550:intron 10.0%
!! TTAATTAGTAATTATATAAG+AGG + chr3_4:18739324-18739343 None:intergenic 10.0%
!! AATTAATTCTTTAATTCTTA+TGG - chr3_4:18739373-18739392 Msa0493550:intron 10.0%
!! AAAAAAAATGTAATATTAGT+TGG + chr3_4:18740953-18740972 None:intergenic 10.0%
!!! AATATTACATTTTTTTTTTG+AGG - chr3_4:18740956-18740975 Msa0493550:intron 10.0%
!!! ATATTACATTTTTTTTTTGA+GGG - chr3_4:18740957-18740976 Msa0493550:intron 10.0%
!! AATTATAGTATAAAACAAAA+AGG + chr3_4:18741002-18741021 None:intergenic 10.0%
!!! TTTATAGGATAAATTTTATT+TGG - chr3_4:18741534-18741553 Msa0493550:CDS 10.0%
!! TCTATATAAAGCAAAAAAAT+GGG + chr3_4:18737378-18737397 None:intergenic 15.0%
!! ATCTATATAAAGCAAAAAAA+TGG + chr3_4:18737379-18737398 None:intergenic 15.0%
!!! TGTATATTTATTTTGTTACA+TGG - chr3_4:18737622-18737641 Msa0493550:intron 15.0%
!!! AAAAATAGATCTAACATTTT+TGG - chr3_4:18737786-18737805 Msa0493550:three_prime_UTR 15.0%
!!! TTTTTTTTTAAGAAGCTAAA+AGG - chr3_4:18738000-18738019 Msa0493550:CDS 15.0%
!!! TTTTAGATTTTAATTTTTGG+TGG + chr3_4:18738133-18738152 None:intergenic 15.0%
!! CAAATCAATGAAAAATAAAT+AGG + chr3_4:18738422-18738441 None:intergenic 15.0%
!!! CTATTTATTTTTCATTGATT+TGG - chr3_4:18738420-18738439 Msa0493550:intron 15.0%
!!! ATAAACTTCAATTATTTTGT+AGG - chr3_4:18738860-18738879 Msa0493550:intron 15.0%
!!! TCTTTTTTTTTTTTTTTGAG+GGG - chr3_4:18738975-18738994 Msa0493550:intron 15.0%
!!! GTAAAATTTAACTTTATACT+AGG + chr3_4:18739067-18739086 None:intergenic 15.0%
!!! AAGAAAAAAACTGTTTTATT+TGG + chr3_4:18739549-18739568 None:intergenic 15.0%
!!! ATTAATTTAATGGATAAAAC+AGG - chr3_4:18739759-18739778 Msa0493550:intron 15.0%
!!! TCATATGTTAATATTTTCTT+CGG + chr3_4:18740267-18740286 None:intergenic 15.0%
!! GGAACTTATTATATAAATAT+AGG - chr3_4:18740323-18740342 Msa0493550:intron 15.0%
!!! TATTACATTTTTTTTTTGAG+GGG - chr3_4:18740958-18740977 Msa0493550:intron 15.0%
!!! AACAAATTAATTTTTTTTCC+AGG - chr3_4:18741572-18741591 Msa0493550:intron 15.0%
!!! TTGTTTTATGAATATTTTTC+AGG - chr3_4:18742473-18742492 Msa0493550:intron 15.0%
!! ATATTTAATCAAGAGTTTAA+TGG - chr3_4:18742640-18742659 Msa0493550:intron 15.0%
!! AGTATAATATAATTAGACAA+AGG + chr3_4:18742684-18742703 None:intergenic 15.0%
!! AATATCGATAAATAAATTGT+TGG - chr3_4:18743605-18743624 Msa0493550:intron 15.0%
!! TTTAAAAATTTAAGGGAATT+CGG - chr3_4:18743940-18743959 Msa0493550:CDS 15.0%
!! AATAAATATACACTATGTAG+TGG + chr3_4:18737614-18737633 None:intergenic 20.0%
!! TTAATACATATTCCAACATA+AGG - chr3_4:18737698-18737717 Msa0493550:three_prime_UTR 20.0%
!! TAATACATATTCCAACATAA+GGG - chr3_4:18737699-18737718 Msa0493550:three_prime_UTR 20.0%
!!! TTATTATTTGAACTTGTTCA+TGG - chr3_4:18737746-18737765 Msa0493550:three_prime_UTR 20.0%
!! ACAAATTATTCTTTACTGTA+TGG - chr3_4:18737823-18737842 Msa0493550:three_prime_UTR 20.0%
!! CAAATTATTCTTTACTGTAT+GGG - chr3_4:18737824-18737843 Msa0493550:three_prime_UTR 20.0%
!!! ATATTTTAAAACCGTTTTGT+TGG + chr3_4:18738082-18738101 None:intergenic 20.0%
!! CTTACTTATAAATAGTTTAC+CGG - chr3_4:18738452-18738471 Msa0493550:intron 20.0%
!! CATAAACATTTGATATATGT+AGG + chr3_4:18738542-18738561 None:intergenic 20.0%
!!! TATTATGAGGTAATTTTTGT+TGG - chr3_4:18738585-18738604 Msa0493550:intron 20.0%
!! AATTAAATTTCTCTCTATCA+TGG - chr3_4:18738681-18738700 Msa0493550:intron 20.0%
!!! ATATCTTTGTTATCTTACTT+GGG + chr3_4:18738956-18738975 None:intergenic 20.0%
!!! AGGACAATTTCATTTTTTTT+AGG + chr3_4:18739100-18739119 None:intergenic 20.0%
!! TTATAGAATTTAACTCCTAA+GGG + chr3_4:18739265-18739284 None:intergenic 20.0%
!!! AAAAACTGTTTTATTTGGAA+AGG + chr3_4:18739544-18739563 None:intergenic 20.0%
!! TATATATTGCACAAACAAAT+AGG - chr3_4:18740067-18740086 Msa0493550:intron 20.0%
!! ATATATTGCACAAACAAATA+GGG - chr3_4:18740068-18740087 Msa0493550:intron 20.0%
!! ACAATCAAATTAAAACATGT+TGG - chr3_4:18740478-18740497 Msa0493550:intron 20.0%
!! TTTCAAATATCATCTTAACT+AGG + chr3_4:18740553-18740572 None:intergenic 20.0%
!!! AACAATATTAATTTGCAATG+TGG + chr3_4:18740802-18740821 None:intergenic 20.0%
!! ATTATCAATTATTGTTGATG+TGG - chr3_4:18740833-18740852 Msa0493550:intron 20.0%
!! TTAAGAGAAAAAAGTTTATG+TGG - chr3_4:18740879-18740898 Msa0493550:intron 20.0%
!!! TATTTTCACAACTATAAAGT+GGG + chr3_4:18740912-18740931 None:intergenic 20.0%
!!! ATATTTTCACAACTATAAAG+TGG + chr3_4:18740913-18740932 None:intergenic 20.0%
!!! GAAATTTTGTTTCATTTCAT+AGG - chr3_4:18741073-18741092 Msa0493550:intron 20.0%
!! TATAAAAAATCTACTTGAGT+TGG - chr3_4:18741268-18741287 Msa0493550:intron 20.0%
!!! CATTTTACTCTACTTTTAAA+CGG - chr3_4:18741314-18741333 Msa0493550:intron 20.0%
!!! ATTTTACTCTACTTTTAAAC+GGG - chr3_4:18741315-18741334 Msa0493550:intron 20.0%
!!! GCAAGAAATTAATTTTGTAA+CGG + chr3_4:18741465-18741484 None:intergenic 20.0%
!!! AATTTTGAGTACTTGTTTAT+AGG - chr3_4:18741519-18741538 Msa0493550:CDS 20.0%
!! AACAAAGATATCATAATTTG+GGG + chr3_4:18741628-18741647 None:intergenic 20.0%
!! CAACAAAGATATCATAATTT+GGG + chr3_4:18741629-18741648 None:intergenic 20.0%
!! CAAATTATGATATCTTTGTT+GGG - chr3_4:18741628-18741647 Msa0493550:intron 20.0%
!! AAAAAAAAAAATCATACCGA+GGG + chr3_4:18741940-18741959 None:intergenic 20.0%
!! AGATTACAATATAGTTATTG+TGG + chr3_4:18742125-18742144 None:intergenic 20.0%
!!! AACAATATCATACAATGTTT+TGG - chr3_4:18742202-18742221 Msa0493550:intron 20.0%
!!! ACAATATCATACAATGTTTT+GGG - chr3_4:18742203-18742222 Msa0493550:intron 20.0%
!! TATCACAACAATTATTTACT+TGG - chr3_4:18742733-18742752 Msa0493550:intron 20.0%
!! TGTTTAATTAACGAGTTTAA+AGG + chr3_4:18742767-18742786 None:intergenic 20.0%
!! AATAAGTTATTTATCGAAAC+AGG - chr3_4:18743217-18743236 Msa0493550:intron 20.0%
!! TTCATATGTATTGAGATAAT+TGG - chr3_4:18743535-18743554 Msa0493550:intron 20.0%
!!! TTTTTTATTGCAGAAACTAA+AGG + chr3_4:18743900-18743919 None:intergenic 20.0%
!! GCTTCTTAAAAAAAAAAGTT+AGG - chr3_4:18743986-18744005 Msa0493550:five_prime_UTR 20.0%
! CAGAACTCATTAAAAAATCA+TGG - chr3_4:18737352-18737371 Msa0493550:three_prime_UTR 25.0%
! TAGAGAAAAAAGATAGAGAA+GGG + chr3_4:18737458-18737477 None:intergenic 25.0%
! ACAAAATAAGAAGTGAGTAA+TGG + chr3_4:18737679-18737698 None:intergenic 25.0%
! TACATTAAAGATTGCAACAT+AGG + chr3_4:18737978-18737997 None:intergenic 25.0%
! TTACTTGATCATTTGTTTCA+GGG + chr3_4:18738203-18738222 None:intergenic 25.0%
!! AAAATCAAGGTCTTGTATAA+TGG + chr3_4:18738272-18738291 None:intergenic 25.0%
!!! TGAATCATTTACCATTTTTC+AGG - chr3_4:18738322-18738341 Msa0493550:intron 25.0%
!! TGATTTTTATCATCGATACA+AGG - chr3_4:18738749-18738768 Msa0493550:intron 25.0%
!! GATATCTTTGTTATCTTACT+TGG + chr3_4:18738957-18738976 None:intergenic 25.0%
!!! TTTTTTTTTTTTGAGGGGAA+AGG - chr3_4:18738980-18738999 Msa0493550:intron 25.0%
! GTTATAGAATTTAACTCCTA+AGG + chr3_4:18739266-18739285 None:intergenic 25.0%
! CAATGAAACAATGTTACAAA+GGG + chr3_4:18739438-18739457 None:intergenic 25.0%
! CTTTGTAACATTGTTTCATT+GGG - chr3_4:18739437-18739456 Msa0493550:CDS 25.0%
! GGAAAGGAATTAAGTTATTA+GGG + chr3_4:18739528-18739547 None:intergenic 25.0%
! TGGAAAGGAATTAAGTTATT+AGG + chr3_4:18739529-18739548 None:intergenic 25.0%
!! TAACTAGAATTCACCTTTTA+AGG - chr3_4:18739628-18739647 Msa0493550:CDS 25.0%
! TCACTAATTATCACCTTAAA+AGG + chr3_4:18739644-18739663 None:intergenic 25.0%
!!! TTTTAAGGTGATAATTAGTG+AGG - chr3_4:18739643-18739662 Msa0493550:CDS 25.0%
! ACGATGCATTATAATATGTA+AGG + chr3_4:18739689-18739708 None:intergenic 25.0%
!! ATTTAATGGATAAAACAGGA+AGG - chr3_4:18739763-18739782 Msa0493550:intron 25.0%
! AGTATACAAGAGAAAATATC+AGG - chr3_4:18740012-18740031 Msa0493550:intron 25.0%
! AAGAGAAAATATCAGGTAAT+TGG - chr3_4:18740019-18740038 Msa0493550:intron 25.0%
! CATGTTAATTTATGTCCTAA+TGG + chr3_4:18740437-18740456 None:intergenic 25.0%
! TGTCTATATGAACATGTTAA+GGG + chr3_4:18740461-18740480 None:intergenic 25.0%
! TTGTCTATATGAACATGTTA+AGG + chr3_4:18740462-18740481 None:intergenic 25.0%
! ATTAGCCAATTAGATTGTTT+CGG + chr3_4:18740619-18740638 None:intergenic 25.0%
! TATGAAGAAATGAGTAAATC+AGG + chr3_4:18740693-18740712 None:intergenic 25.0%
!!! TATTAATTTGCAATGTGGAT+GGG + chr3_4:18740797-18740816 None:intergenic 25.0%
!!! ATATTAATTTGCAATGTGGA+TGG + chr3_4:18740798-18740817 None:intergenic 25.0%
!!! CTCAAGTAGATTTTTTATAC+AGG + chr3_4:18741267-18741286 None:intergenic 25.0%
! ATTAGATCTCTTAGATTAGT+CGG - chr3_4:18741360-18741379 Msa0493550:CDS 25.0%
! ATATCATAATTTGGGGATAA+TGG + chr3_4:18741621-18741640 None:intergenic 25.0%
! CCAACAAAGATATCATAATT+TGG + chr3_4:18741630-18741649 None:intergenic 25.0%
! CCAAATTATGATATCTTTGT+TGG - chr3_4:18741627-18741646 Msa0493550:intron 25.0%
!!! ATTCTAGTTTTGTGAATTTG+GGG + chr3_4:18741663-18741682 None:intergenic 25.0%
!!! GATTCTAGTTTTGTGAATTT+GGG + chr3_4:18741664-18741683 None:intergenic 25.0%
!!! AGATTCTAGTTTTGTGAATT+TGG + chr3_4:18741665-18741684 None:intergenic 25.0%
!! AAAGATTCCTATGATTTTCT+TGG - chr3_4:18741694-18741713 Msa0493550:intron 25.0%
! TGATCAAGTGAAAAATGTAA+TGG + chr3_4:18741888-18741907 None:intergenic 25.0%
! GAAAAAAAAAAATCATACCG+AGG + chr3_4:18741941-18741960 None:intergenic 25.0%
! ATACTACATTTGTGAAGAAT+CGG + chr3_4:18741998-18742017 None:intergenic 25.0%
!!! TATAGTTATTGTGGCTTTAT+AGG + chr3_4:18742116-18742135 None:intergenic 25.0%
!!! TTTTTTTGTCTTAGATGAAG+TGG + chr3_4:18743008-18743027 None:intergenic 25.0%
! ACCAATTATGTAATGCTTAA+TGG - chr3_4:18743562-18743581 Msa0493550:intron 25.0%
!! AAGTTTCTTATATTTGAGAC+CGG + chr3_4:18743706-18743725 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr3_4:18743741-18743760 Msa0493550:intron 25.0%
!! AAGTTTATTACATTTGAGAC+CGG - chr3_4:18743815-18743834 Msa0493550:CDS 25.0%
! ATATTCACAGCTTAATCATT+TGG - chr3_4:18743850-18743869 Msa0493550:CDS 25.0%
! AAAAAAAAGTTAGGATTCAG+TGG - chr3_4:18743995-18744014 Msa0493550:five_prime_UTR 25.0%
CTAGAGAAAAAAGATAGAGA+AGG + chr3_4:18737459-18737478 None:intergenic 30.0%
! TTGAATGAAGCATATTGACT+TGG + chr3_4:18737529-18737548 None:intergenic 30.0%
GTCAATATGCTTCATTCAAT+AGG - chr3_4:18737530-18737549 Msa0493550:intron 30.0%
AGAGAAAATCATGAGGAAAA+AGG + chr3_4:18737558-18737577 None:intergenic 30.0%
! TTTCCTCATGATTTTCTCTT+TGG - chr3_4:18737559-18737578 Msa0493550:intron 30.0%
ATTCCAAAGAGAAAATCATG+AGG + chr3_4:18737565-18737584 None:intergenic 30.0%
!!! CATGATTTTCTCTTTGGAAT+TGG - chr3_4:18737565-18737584 Msa0493550:intron 30.0%
AGCAAACATTGCAAATAAAC+TGG + chr3_4:18737725-18737744 None:intergenic 30.0%
TATAGCCACAACATTAAGAA+GGG + chr3_4:18737909-18737928 None:intergenic 30.0%
ATATAGCCACAACATTAAGA+AGG + chr3_4:18737910-18737929 None:intergenic 30.0%
TTGAGTAACTCATAAGATCT+CGG - chr3_4:18738101-18738120 Msa0493550:intron 30.0%
GATCTAAACTTCATTCTTAG+TGG + chr3_4:18738181-18738200 None:intergenic 30.0%
GTTACTTGATCATTTGTTTC+AGG + chr3_4:18738204-18738223 None:intergenic 30.0%
!!! TTTACCATTTTTCAGGTAGA+AGG - chr3_4:18738329-18738348 Msa0493550:intron 30.0%
ACATTCACTAAACAAAATCC+AGG - chr3_4:18738392-18738411 Msa0493550:intron 30.0%
GAAAAATAAATAGGGTAACC+TGG + chr3_4:18738413-18738432 None:intergenic 30.0%
! TATGCAACTCTTTTCCTATT+TGG - chr3_4:18738558-18738577 Msa0493550:intron 30.0%
! ATGCAACTCTTTTCCTATTT+GGG - chr3_4:18738559-18738578 Msa0493550:intron 30.0%
ACTTAGTGACAAGAGATTTA+AGG + chr3_4:18739120-18739139 None:intergenic 30.0%
ATTAATGAGATCCTAGCAAA+TGG - chr3_4:18739292-18739311 Msa0493550:intron 30.0%
!!! CTTATGGAGAACTCATTTTT+TGG - chr3_4:18739389-18739408 Msa0493550:intron 30.0%
!!! AACTCATTTTTTGGCTTACA+TGG - chr3_4:18739398-18739417 Msa0493550:intron 30.0%
CCAATGAAACAATGTTACAA+AGG + chr3_4:18739439-18739458 None:intergenic 30.0%
CCTTTGTAACATTGTTTCAT+TGG - chr3_4:18739436-18739455 Msa0493550:CDS 30.0%
AGCTCTTGAAGATGAATATA+AGG - chr3_4:18739470-18739489 Msa0493550:intron 30.0%
GCTCTTGAAGATGAATATAA+GGG - chr3_4:18739471-18739490 Msa0493550:intron 30.0%
GCATTATAATATGTAAGGTC+AGG + chr3_4:18739684-18739703 None:intergenic 30.0%
TACACCATCAATGGATATAA+TGG - chr3_4:18739869-18739888 Msa0493550:intron 30.0%
! ACATATTTAGAACATCTACC+AGG + chr3_4:18739908-18739927 None:intergenic 30.0%
! GGTAGATGTTCTAAATATGT+TGG - chr3_4:18739908-18739927 Msa0493550:intron 30.0%
AAGTTATGAGCAACAATGTA+GGG + chr3_4:18739965-18739984 None:intergenic 30.0%
TACTTATAAATGTGACGAGA+TGG + chr3_4:18740106-18740125 None:intergenic 30.0%
TAAAATGAGCAACTTTGGAT+TGG + chr3_4:18740398-18740417 None:intergenic 30.0%
! GAATCTAAAATGAGCAACTT+TGG + chr3_4:18740403-18740422 None:intergenic 30.0%
ATTCCTTAACATATGCCATT+AGG - chr3_4:18740419-18740438 Msa0493550:intron 30.0%
CATGTTGGTCAAAATTCATA+TGG - chr3_4:18740493-18740512 Msa0493550:intron 30.0%
TTAGCCAATTAGATTGTTTC+GGG + chr3_4:18740618-18740637 None:intergenic 30.0%
AATATTAGTTGGTCACATGA+AGG + chr3_4:18740942-18740961 None:intergenic 30.0%
ATTTCATAGGCTCATCAAAA+AGG - chr3_4:18741086-18741105 Msa0493550:intron 30.0%
GCTCATCAAAAAGGAAAAAT+TGG - chr3_4:18741095-18741114 Msa0493550:intron 30.0%
! CTTTTTATCAGCAACACTAT+TGG + chr3_4:18741156-18741175 None:intergenic 30.0%
! CAATAGTGTTGCTGATAAAA+AGG - chr3_4:18741154-18741173 Msa0493550:intron 30.0%
ATTCACACCAAGAAAATCAT+AGG + chr3_4:18741704-18741723 None:intergenic 30.0%
!!! TAGTCCATTTCGACATTTTT+TGG + chr3_4:18741760-18741779 None:intergenic 30.0%
TTGAAGAATGGTGTATCTAT+TGG - chr3_4:18741913-18741932 Msa0493550:CDS 30.0%
GATCTATGGTGTGAAAAAAT+TGG + chr3_4:18742024-18742043 None:intergenic 30.0%
CAATTTAAGTCTTCGATCTA+TGG + chr3_4:18742038-18742057 None:intergenic 30.0%
!! TTTGGGTTATTTCTTACCTA+AGG - chr3_4:18742220-18742239 Msa0493550:intron 30.0%
! AAGTTTTGCTTGATTACCTT+AGG + chr3_4:18742239-18742258 None:intergenic 30.0%
! GGTAATCAAGCAAAACTTTT+TGG - chr3_4:18742241-18742260 Msa0493550:intron 30.0%
TTATATTAGTCAGTAGAAGC+TGG - chr3_4:18742423-18742442 Msa0493550:CDS 30.0%
ACTCATACTTTATTCCTTCA+AGG + chr3_4:18742592-18742611 None:intergenic 30.0%
TTTCCATATGCTCTTCAATA+TGG - chr3_4:18743067-18743086 Msa0493550:intron 30.0%
! AAACCATATTGAAGAGCATA+TGG + chr3_4:18743073-18743092 None:intergenic 30.0%
! TTGTATACGCTATAAGTTGA+TGG + chr3_4:18743102-18743121 None:intergenic 30.0%
CACAATGAATTGATTGAACA+TGG - chr3_4:18743242-18743261 Msa0493550:intron 30.0%
! GAACATGGTAGTTAATGTTT+TGG - chr3_4:18743257-18743276 Msa0493550:intron 30.0%
ACTCAAATTTGATCTTCACT+TGG - chr3_4:18743469-18743488 Msa0493550:intron 30.0%
TGAATGCAAGTAACATACTA+AGG + chr3_4:18743519-18743538 None:intergenic 30.0%
GCCATTAAGCATTACATAAT+TGG + chr3_4:18743566-18743585 None:intergenic 30.0%
TTTCATTCTCTAGCAACTTA+AGG - chr3_4:18743638-18743657 Msa0493550:intron 30.0%
TTCATTCTCTAGCAACTTAA+GGG - chr3_4:18743639-18743658 Msa0493550:intron 30.0%
TGGTCAAATAAGTGATATCA+AGG - chr3_4:18743669-18743688 Msa0493550:intron 30.0%
CATTCAATAAACGATGTATG+TGG + chr3_4:18743780-18743799 None:intergenic 30.0%
AAAAATTTAAGGGAATTCGG+AGG - chr3_4:18743943-18743962 Msa0493550:CDS 30.0%
AGATGTCACTACTTCATCTT+TGG - chr3_4:18737395-18737414 Msa0493550:three_prime_UTR 35.0%
GAAAAAAGATAGAGAAGGGA+AGG + chr3_4:18737454-18737473 None:intergenic 35.0%
! TTTTTCTCTAGCTACCCTTT+TGG - chr3_4:18737468-18737487 Msa0493550:three_prime_UTR 35.0%
TGTTGCTAATGCTAGCTATA+TGG + chr3_4:18737652-18737671 None:intergenic 35.0%
AAATAAACTGGCCCTTATGT+TGG + chr3_4:18737713-18737732 None:intergenic 35.0%
TATTGCCCTTCTTAATGTTG+TGG - chr3_4:18737901-18737920 Msa0493550:CDS 35.0%
! GCAGTAACATCAAGGTATTA+AGG + chr3_4:18737956-18737975 None:intergenic 35.0%
TCAAATGGAAGCCAACAAAA+CGG - chr3_4:18738068-18738087 Msa0493550:intron 35.0%
CTAAACTTCATTCTTAGTGG+TGG + chr3_4:18738178-18738197 None:intergenic 35.0%
GCTGGATACACATAAAATCA+AGG + chr3_4:18738285-18738304 None:intergenic 35.0%
! TGATTTTATGTGTATCCAGC+TGG - chr3_4:18738285-18738304 Msa0493550:intron 35.0%
CCTCATAATACAACCCAAAT+AGG + chr3_4:18738575-18738594 None:intergenic 35.0%
!! CCTATTTGGGTTGTATTATG+AGG - chr3_4:18738572-18738591 Msa0493550:intron 35.0%
ATGGTTGAGCAGATAAGATT+TGG - chr3_4:18738700-18738719 Msa0493550:intron 35.0%
TGGTTGAGCAGATAAGATTT+GGG - chr3_4:18738701-18738720 Msa0493550:intron 35.0%
! TATTTTGTAGGAAGACCTCA+AGG - chr3_4:18738872-18738891 Msa0493550:intron 35.0%
GAATATTCTTGACCATGAGA+TGG + chr3_4:18738934-18738953 None:intergenic 35.0%
! AGAGGTTTTTACCATTTGCT+AGG + chr3_4:18739306-18739325 None:intergenic 35.0%
!!! TCATTTTTTGGCTTACATGG+TGG - chr3_4:18739401-18739420 Msa0493550:intron 35.0%
ATTCATCTTCAAGAGCTTGT+GGG + chr3_4:18739467-18739486 None:intergenic 35.0%
TATTCATCTTCAAGAGCTTG+TGG + chr3_4:18739468-18739487 None:intergenic 35.0%
! GATAATTAGTGAGGTGTTTG+AGG - chr3_4:18739652-18739671 Msa0493550:CDS 35.0%
! GACTTTTGCTTCAAGACATT+TGG - chr3_4:18739803-18739822 Msa0493550:intron 35.0%
CTTCAAGACATTTGGAGATA+GGG - chr3_4:18739811-18739830 Msa0493550:intron 35.0%
!! CCATTGATGGTGTATGAATA+AGG + chr3_4:18739863-18739882 None:intergenic 35.0%
CCTTATTCATACACCATCAA+TGG - chr3_4:18739860-18739879 Msa0493550:intron 35.0%
ACCATCAATGGATATAATGG+TGG - chr3_4:18739872-18739891 Msa0493550:intron 35.0%
ACCACCATTATATCCATTGA+TGG + chr3_4:18739876-18739895 None:intergenic 35.0%
CAAGTTATGAGCAACAATGT+AGG + chr3_4:18739966-18739985 None:intergenic 35.0%
TGTCCTAATGGCATATGTTA+AGG + chr3_4:18740425-18740444 None:intergenic 35.0%
AACTAGGCAAGAAATTAGAG+TGG + chr3_4:18740537-18740556 None:intergenic 35.0%
AATTAGATTGTTTCGGGAAC+TGG + chr3_4:18740612-18740631 None:intergenic 35.0%
AGTTCCCGAAACAATCTAAT+TGG - chr3_4:18740611-18740630 Msa0493550:intron 35.0%
! TTCCTGATTTTGTGGAAATC+AGG + chr3_4:18740657-18740676 None:intergenic 35.0%
! TCATCAAGTTCCTGATTTTG+TGG + chr3_4:18740665-18740684 None:intergenic 35.0%
CATAAACGCCTTATATTGCA+TGG - chr3_4:18740709-18740728 Msa0493550:intron 35.0%
TTTCACGACCATGCAATATA+AGG + chr3_4:18740720-18740739 None:intergenic 35.0%
!! TCTCTTAATTTGTGTCATCC+CGG + chr3_4:18740867-18740886 None:intergenic 35.0%
CACAACTATAAAGTGGGATT+AGG + chr3_4:18740906-18740925 None:intergenic 35.0%
TTCAAAGAAGTGAGTCACTA+AGG + chr3_4:18741126-18741145 None:intergenic 35.0%
TCAGCAACACTATTGGAATA+TGG + chr3_4:18741149-18741168 None:intergenic 35.0%
!!! CACTTGACTTCTTTTTTGGA+TGG - chr3_4:18741189-18741208 Msa0493550:intron 35.0%
! TCCATGTGTAGTTAGTTTCA+TGG + chr3_4:18741487-18741506 None:intergenic 35.0%
TTTGCTCATCCCATTACATA+TGG - chr3_4:18741595-18741614 Msa0493550:intron 35.0%
! GGATAATGGCCATATGTAAT+GGG + chr3_4:18741607-18741626 None:intergenic 35.0%
ACTGCTTTGTGCATAATATG+TGG + chr3_4:18741734-18741753 None:intergenic 35.0%
TGCACCAAAAAATGTCGAAA+TGG - chr3_4:18741753-18741772 Msa0493550:intron 35.0%
! TTGATCACAGCATTGAAGAA+TGG - chr3_4:18741901-18741920 Msa0493550:CDS 35.0%
AAACAAACAACGAAATCACG+AGG + chr3_4:18741963-18741982 None:intergenic 35.0%
ACAAGATCATGAATTCCCTT+TGG + chr3_4:18742302-18742321 None:intergenic 35.0%
! TTTTCAGTAATGTACACTGG+TGG + chr3_4:18742353-18742372 None:intergenic 35.0%
! CCATTTTCAGTAATGTACAC+TGG + chr3_4:18742356-18742375 None:intergenic 35.0%
CCAGTGTACATTACTGAAAA+TGG - chr3_4:18742353-18742372 Msa0493550:intron 35.0%
! TTTCAGGCATTGCTACATAT+AGG - chr3_4:18742489-18742508 Msa0493550:intron 35.0%
TAGCTCGTAAAGATGGTATT+AGG - chr3_4:18742534-18742553 Msa0493550:intron 35.0%
CATACTTTATTCCTTCAAGG+AGG + chr3_4:18742589-18742608 None:intergenic 35.0%
TAAAGTCACACACAACTATG+AGG + chr3_4:18742971-18742990 None:intergenic 35.0%
! GTGTGTGACTTTAATTTCAG+TGG - chr3_4:18742978-18742997 Msa0493550:CDS 35.0%
! ATTTTCCGACAGCTATGAAT+GGG - chr3_4:18743331-18743350 Msa0493550:intron 35.0%
GTAACATACTAAGGTGACAT+TGG + chr3_4:18743510-18743529 None:intergenic 35.0%
TCATTCTCTAGCAACTTAAG+GGG - chr3_4:18743640-18743659 Msa0493550:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr3_4:18743702-18743721 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr3_4:18743703-18743722 None:intergenic 35.0%
! TTTATTACATTTGAGACCGG+AGG - chr3_4:18743818-18743837 Msa0493550:CDS 35.0%
! TTATTACATTTGAGACCGGA+GGG - chr3_4:18743819-18743838 Msa0493550:CDS 35.0%
TGAATATTGAATACTCCCTC+CGG + chr3_4:18743837-18743856 None:intergenic 35.0%
! CAGAAACTAAAGGAGCATAT+AGG + chr3_4:18743890-18743909 None:intergenic 35.0%
GAATTCGGAGGTTAAGATTT+AGG - chr3_4:18743955-18743974 Msa0493550:exon 35.0%
AAAAGTTAGGATTCAGTGGA+AGG - chr3_4:18743999-18744018 Msa0493550:five_prime_UTR 35.0%
AAAGTTAGGATTCAGTGGAA+GGG - chr3_4:18744000-18744019 Msa0493550:five_prime_UTR 35.0%
TGGAACTGAACCACAAAAAG+TGG - chr3_4:18737501-18737520 Msa0493550:three_prime_UTR 40.0%
!!! TGACTTGGTTCCACTTTTTG+TGG + chr3_4:18737514-18737533 None:intergenic 40.0%
! AATTGGTTCTTCTGCTTACC+AGG - chr3_4:18737582-18737601 Msa0493550:intron 40.0%
ACTATGTAGTGGTATGAACC+TGG + chr3_4:18737603-18737622 None:intergenic 40.0%
TGCTAATGCTAGCTATATGG+TGG + chr3_4:18737649-18737668 None:intergenic 40.0%
! GTTTTTGATGTCTCTACGAC+AGG + chr3_4:18737934-18737953 None:intergenic 40.0%
CAACATAGGCAGTAACATCA+AGG + chr3_4:18737964-18737983 None:intergenic 40.0%
ATAAGAACCATTCGCGCAAA+AGG - chr3_4:18738039-18738058 Msa0493550:CDS 40.0%
! CGCAAAAGGTGTGTTTCAAA+TGG - chr3_4:18738053-18738072 Msa0493550:CDS 40.0%
TCATTCTTAGTGGTGGTTGA+AGG + chr3_4:18738171-18738190 None:intergenic 40.0%
!!! ATGCTTACTTTTTCTCCAGC+TGG + chr3_4:18738303-18738322 None:intergenic 40.0%
AAGGAGCCTCAGATATAGAT+GGG - chr3_4:18738348-18738367 Msa0493550:intron 40.0%
GTGAATGTGTCCCATATACT+TGG + chr3_4:18738380-18738399 None:intergenic 40.0%
TTACCGGTGAAACTCATACA+CGG - chr3_4:18738468-18738487 Msa0493550:intron 40.0%
TTACCGTGTATGAGTTTCAC+CGG + chr3_4:18738474-18738493 None:intergenic 40.0%
CAATTTCTTTCACCACCTTG+AGG + chr3_4:18738890-18738909 None:intergenic 40.0%
CTCAAGGTGGTGAAAGAAAT+TGG - chr3_4:18738888-18738907 Msa0493550:intron 40.0%
GGTGGTGAAAGAAATTGGTT+TGG - chr3_4:18738893-18738912 Msa0493550:intron 40.0%
CATACAGATTCTCCATCTCA+TGG - chr3_4:18738919-18738938 Msa0493550:intron 40.0%
TGTCATGATATCAAGTGCAG+AGG - chr3_4:18739222-18739241 Msa0493550:intron 40.0%
GTCATGATATCAAGTGCAGA+GGG - chr3_4:18739223-18739242 Msa0493550:intron 40.0%
CTTGAAGCAAAAGTCAGCAT+AGG + chr3_4:18739798-18739817 None:intergenic 40.0%
GCTTCAAGACATTTGGAGAT+AGG - chr3_4:18739810-18739829 Msa0493550:intron 40.0%
TTGGAGATAGGGTTAAGCAT+TGG - chr3_4:18739822-18739841 Msa0493550:intron 40.0%
TGGAGATAGGGTTAAGCATT+GGG - chr3_4:18739823-18739842 Msa0493550:intron 40.0%
TATGTTGGAAATTGCACCAC+TGG - chr3_4:18739923-18739942 Msa0493550:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr3_4:18740289-18740308 Msa0493550:intron 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG - chr3_4:18740290-18740309 Msa0493550:intron 40.0%
! CTGATTTTGTGGAAATCAGG+CGG + chr3_4:18740654-18740673 None:intergenic 40.0%
! TCTGCGAAATCAGTTTTTGC+TGG - chr3_4:18740741-18740760 Msa0493550:intron 40.0%
!!! CGAGCACTTGACTTCTTTTT+TGG - chr3_4:18741185-18741204 Msa0493550:intron 40.0%
GCCATGAAACTAACTACACA+TGG - chr3_4:18741483-18741502 Msa0493550:CDS 40.0%
! GGGATAATGGCCATATGTAA+TGG + chr3_4:18741608-18741627 None:intergenic 40.0%
!! TTGTGCAGACTGATTTGACT+TGG - chr3_4:18742264-18742283 Msa0493550:intron 40.0%
!! TTGGCTCTATGTCTATCCAA+AGG - chr3_4:18742283-18742302 Msa0493550:intron 40.0%
! TGGCTCTATGTCTATCCAAA+GGG - chr3_4:18742284-18742303 Msa0493550:intron 40.0%
TCTTTACGAGCTACATTGAC+TGG + chr3_4:18742527-18742546 None:intergenic 40.0%
GTCAATGTAGCTCGTAAAGA+TGG - chr3_4:18742527-18742546 Msa0493550:intron 40.0%
TTATTCCTTCAAGGAGGTAG+TGG + chr3_4:18742583-18742602 None:intergenic 40.0%
TGGTAAATGCCGAAATTGCA+AGG - chr3_4:18742913-18742932 Msa0493550:intron 40.0%
AGACATGGTGCAAATGTGAA+GGG - chr3_4:18743293-18743312 Msa0493550:intron 40.0%
! CATTTTCCGACAGCTATGAA+TGG - chr3_4:18743330-18743349 Msa0493550:intron 40.0%
!! ATCCCAAGTACTCTGCTTTT+TGG - chr3_4:18743417-18743436 Msa0493550:intron 40.0%
! AGCCAAAAAGCAGAGTACTT+GGG + chr3_4:18743422-18743441 None:intergenic 40.0%
CTGCAAAAGTTCCTTCTCAA+GGG - chr3_4:18743440-18743459 Msa0493550:intron 40.0%
TGAGTTATCATCCCTTGAGA+AGG + chr3_4:18743454-18743473 None:intergenic 40.0%
CATTCTCTAGCAACTTAAGG+GGG - chr3_4:18743641-18743660 Msa0493550:intron 40.0%
AAGTTAGGATTCAGTGGAAG+GGG - chr3_4:18744001-18744020 Msa0493550:five_prime_UTR 40.0%
TTTGCAGCCATGAGAGCTAT+AGG - chr3_4:18737427-18737446 Msa0493550:three_prime_UTR 45.0%
TCCAGTGACAACAGCCAAAA+GGG + chr3_4:18737485-18737504 None:intergenic 45.0%
TTCCAGTGACAACAGCCAAA+AGG + chr3_4:18737486-18737505 None:intergenic 45.0%
! AAACACACCTTTTGCGCGAA+TGG + chr3_4:18738049-18738068 None:intergenic 45.0%
GGCTCCTTCTACCTGAAAAA+TGG + chr3_4:18738336-18738355 None:intergenic 45.0%
GAAGGAGCCTCAGATATAGA+TGG - chr3_4:18738347-18738366 Msa0493550:intron 45.0%
AGCCTCAGATATAGATGGGA+GGG - chr3_4:18738352-18738371 Msa0493550:intron 45.0%
! AAGATTTGGGACCATAGCAG+TGG - chr3_4:18738714-18738733 Msa0493550:intron 45.0%
! GACCATAGCAGTGGTAATGT+AGG - chr3_4:18738723-18738742 Msa0493550:intron 45.0%
CTCCTACATTACCACTGCTA+TGG + chr3_4:18738728-18738747 None:intergenic 45.0%
TTTGTAGGAAGACCTCAAGG+TGG - chr3_4:18738875-18738894 Msa0493550:intron 45.0%
ATATCAAGTGCAGAGGGCAA+GGG - chr3_4:18739229-18739248 Msa0493550:intron 45.0%
!!! TTTTTGGCTTACATGGTGGC+AGG - chr3_4:18739405-18739424 Msa0493550:intron 45.0%
! AATGGTGGTACTTTTGCACC+TGG - chr3_4:18739887-18739906 Msa0493550:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG + chr3_4:18740306-18740325 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG + chr3_4:18740307-18740326 None:intergenic 45.0%
GATTGTTTCGGGAACTGGTT+GGG + chr3_4:18740607-18740626 None:intergenic 45.0%
AGATTGTTTCGGGAACTGGT+TGG + chr3_4:18740608-18740627 None:intergenic 45.0%
CGCCTGATTTCCACAAAATC+AGG - chr3_4:18740652-18740671 Msa0493550:intron 45.0%
! TGTAATGGGATGAGCAAACC+TGG + chr3_4:18741593-18741612 None:intergenic 45.0%
TGGTGTATCTATTGGTCCCT+CGG - chr3_4:18741921-18741940 Msa0493550:CDS 45.0%
!! GGTAGTGGAGATGGTCATTA+TGG + chr3_4:18742568-18742587 None:intergenic 45.0%
TCTAGAAGTCCTAGCACAAC+TGG - chr3_4:18742893-18742912 Msa0493550:intron 45.0%
AAATGCCGAAATTGCAAGGC+CGG - chr3_4:18742917-18742936 Msa0493550:intron 45.0%
ACACACAACTATGAGGTCTC+AGG + chr3_4:18742964-18742983 None:intergenic 45.0%
GCACCATGTCTGCAACAAAA+GGG + chr3_4:18743284-18743303 None:intergenic 45.0%
TGCACCATGTCTGCAACAAA+AGG + chr3_4:18743285-18743304 None:intergenic 45.0%
CAGACATGGTGCAAATGTGA+AGG - chr3_4:18743292-18743311 Msa0493550:intron 45.0%
ATGTGAAGGGCTACTATGCA+TGG - chr3_4:18743306-18743325 Msa0493550:intron 45.0%
TGCATCCCATTCATAGCTGT+CGG + chr3_4:18743339-18743358 None:intergenic 45.0%
ACAGCTATGAATGGGATGCA+GGG - chr3_4:18743339-18743358 Msa0493550:intron 45.0%
! CAGCCAAAAAGCAGAGTACT+TGG + chr3_4:18743423-18743442 None:intergenic 45.0%
GCTGCAAAAGTTCCTTCTCA+AGG - chr3_4:18743439-18743458 Msa0493550:intron 45.0%
TCTAGCAACTTAAGGGGGTA+TGG - chr3_4:18743646-18743665 Msa0493550:intron 45.0%
TATCAAGGATCTACTCCCTC+CGG - chr3_4:18743684-18743703 Msa0493550:intron 45.0%
!!! TATTTTTAGATTTTAATTTT+TGG + chr3_4:18738136-18738155 None:intergenic 5.0%
!!! AAATTTAATTCTTTTTATTA+AGG + chr3_4:18738671-18738690 None:intergenic 5.0%
!! TAAATAATAAAAATATTGAA+AGG - chr3_4:18738826-18738845 Msa0493550:CDS 5.0%
!! TAAACTTATTATTAATTTAA+TGG - chr3_4:18739749-18739768 Msa0493550:CDS 5.0%
!! TCATTTAAAAATAAAAAAAT+CGG + chr3_4:18741393-18741412 None:intergenic 5.0%
!! TATACAAAATATTATATTTA+TGG + chr3_4:18742164-18742183 None:intergenic 5.0%
GGAAGGACCTATAGCTCTCA+TGG + chr3_4:18737437-18737456 None:intergenic 50.0%
!! ACCCTTTTGGCTGTTGTCAC+TGG - chr3_4:18737481-18737500 Msa0493550:three_prime_UTR 50.0%
GAGCCTCAGATATAGATGGG+AGG - chr3_4:18738351-18738370 Msa0493550:intron 50.0%
GCCTCAGATATAGATGGGAG+GGG - chr3_4:18738353-18738372 Msa0493550:intron 50.0%
TCCCCTCCCATCTATATCTG+AGG + chr3_4:18738357-18738376 None:intergenic 50.0%
ATGGGAGGGGACCAAGTATA+TGG - chr3_4:18738366-18738385 Msa0493550:intron 50.0%
TGGGAGGGGACCAAGTATAT+GGG - chr3_4:18738367-18738386 Msa0493550:intron 50.0%
GATATCAAGTGCAGAGGGCA+AGG - chr3_4:18739228-18739247 Msa0493550:intron 50.0%
TATCAAGTGCAGAGGGCAAG+GGG - chr3_4:18739230-18739249 Msa0493550:intron 50.0%
CTCTGTACTTGAGTCACCAG+TGG + chr3_4:18739942-18739961 None:intergenic 50.0%
TGTGGAAATCAGGCGGTTAG+TGG + chr3_4:18740647-18740666 None:intergenic 50.0%
GTTGCTGATAAAAAGGCCGC+AGG - chr3_4:18741161-18741180 Msa0493550:intron 50.0%
!! CTTCAAGGAGGTAGTGGAGA+TGG + chr3_4:18742577-18742596 None:intergenic 50.0%
CATCTCCACTACCTCCTTGA+AGG - chr3_4:18742575-18742594 Msa0493550:intron 50.0%
CGGCATTTACCAGTTGTGCT+AGG + chr3_4:18742905-18742924 None:intergenic 50.0%
! GGTCCCTTTTGTTGCAGACA+TGG - chr3_4:18743278-18743297 Msa0493550:intron 50.0%
GACAGCTATGAATGGGATGC+AGG - chr3_4:18743338-18743357 Msa0493550:intron 50.0%
GCAGGGTACACAGTACGATT+TGG - chr3_4:18743356-18743375 Msa0493550:intron 50.0%
! AGCAACTTAAGGGGGTATGG+TGG - chr3_4:18743649-18743668 Msa0493550:intron 50.0%
ATCAAGTGCAGAGGGCAAGG+GGG - chr3_4:18739231-18739250 Msa0493550:intron 55.0%
AAGGGGGCAGTCAATCCCTT+AGG - chr3_4:18739247-18739266 Msa0493550:intron 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - chr3_4:18740302-18740321 Msa0493550:intron 55.0%
GGAAATCAGGCGGTTAGTGG+TGG + chr3_4:18740644-18740663 None:intergenic 55.0%
TGTTGATGTGGTCCATGCGC+CGG - chr3_4:18740845-18740864 Msa0493550:intron 55.0%
ATTTGTGTCATCCCGGCGCA+TGG + chr3_4:18740860-18740879 None:intergenic 55.0%
GAAGTCAAGTGCTCGACCTG+CGG + chr3_4:18741180-18741199 None:intergenic 55.0%
GACGTCCGGCCTTGCAATTT+CGG + chr3_4:18742925-18742944 None:intergenic 55.0%
GAGGTCTCAGGTTCGAACTC+AGG + chr3_4:18742952-18742971 None:intergenic 55.0%
GTTGATGTGGTCCATGCGCC+GGG - chr3_4:18740846-18740865 Msa0493550:intron 60.0%
CGAACTCAGGTCACGACGTC+CGG + chr3_4:18742939-18742958 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 18737339 18744028 18737339 ID=Msa0493550;Name=Msa0493550
chr3_4 mRNA 18737339 18744028 18737339 ID=Msa0493550-mRNA-1;Parent=Msa0493550;Name=Msa0493550-mRNA-1;_AED=0.14;_eAED=0.14;_QI=58|0.91|1|1|0.91|0.84|13|412|499
chr3_4 exon 18737339 18737527 18737339 ID=Msa0493550-mRNA-1:exon:5150;Parent=Msa0493550-mRNA-1
chr3_4 exon 18737678 18738072 18737678 ID=Msa0493550-mRNA-1:exon:5149;Parent=Msa0493550-mRNA-1
chr3_4 exon 18738764 18738872 18738764 ID=Msa0493550-mRNA-1:exon:5148;Parent=Msa0493550-mRNA-1
chr3_4 exon 18738993 18739095 18738993 ID=Msa0493550-mRNA-1:exon:5147;Parent=Msa0493550-mRNA-1
chr3_4 exon 18739425 18739456 18739425 ID=Msa0493550-mRNA-1:exon:5146;Parent=Msa0493550-mRNA-1
chr3_4 exon 18739559 18739773 18739559 ID=Msa0493550-mRNA-1:exon:5145;Parent=Msa0493550-mRNA-1
chr3_4 exon 18740157 18740272 18740157 ID=Msa0493550-mRNA-1:exon:5144;Parent=Msa0493550-mRNA-1
chr3_4 exon 18741334 18741586 18741334 ID=Msa0493550-mRNA-1:exon:5143;Parent=Msa0493550-mRNA-1
chr3_4 exon 18741853 18741940 18741853 ID=Msa0493550-mRNA-1:exon:5142;Parent=Msa0493550-mRNA-1
chr3_4 exon 18742410 18742485 18742410 ID=Msa0493550-mRNA-1:exon:5141;Parent=Msa0493550-mRNA-1
chr3_4 exon 18742597 18742655 18742597 ID=Msa0493550-mRNA-1:exon:5140;Parent=Msa0493550-mRNA-1
chr3_4 exon 18742954 18743023 18742954 ID=Msa0493550-mRNA-1:exon:5139;Parent=Msa0493550-mRNA-1
chr3_4 exon 18743764 18744028 18743764 ID=Msa0493550-mRNA-1:exon:5138;Parent=Msa0493550-mRNA-1
chr3_4 five_prime_UTR 18743971 18744028 18743971 ID=Msa0493550-mRNA-1:five_prime_utr;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18743764 18743970 18743764 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18742954 18743023 18742954 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18742597 18742655 18742597 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18742410 18742485 18742410 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18741853 18741940 18741853 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18741334 18741586 18741334 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18740157 18740272 18740157 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18739559 18739773 18739559 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18739425 18739456 18739425 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18738993 18739095 18738993 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18738764 18738872 18738764 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 CDS 18737901 18738072 18737901 ID=Msa0493550-mRNA-1:cds;Parent=Msa0493550-mRNA-1
chr3_4 three_prime_UTR 18737678 18737900 18737678 ID=Msa0493550-mRNA-1:three_prime_utr;Parent=Msa0493550-mRNA-1
chr3_4 three_prime_UTR 18737339 18737527 18737339 ID=Msa0493550-mRNA-1:three_prime_utr;Parent=Msa0493550-mRNA-1
Gene Sequence

>Msa0493550

ATGTCACTACTTCATCTTTGGACATCACAATTTGCAGCCATGAGAGCTATAGGTCCTTCCCTTCTCTATCTTTTTTCTCTAGCTACCCTTTTGGCTGTTGTCACTGGAACTGAACCACAAAAAGTGGAACCAAGTCAATATGCTTCATTCAATAGGAGCCTTTTTCCTCATGATTTTCTCTTTGGAATTGGTTCTTCTGCTTACCAGGTAGAAGGAGCCTCAGATATAGATGGGAGGGGACCAAGTATATGGGACACATTCACTAAACAAAATCCAGATAAGATTTGGGACCATAGCAGTGGTAATGTAGGAGCTGATTTTTATCATCGATACAAGGAAGACCTCAAGGTGGTGAAAGAAATTGGTTTGGACTCATACAGATTCTCCATCTCATGGTCAAGAATATTCCCAAGCTTAGTACCCTTTGTAACATTGTTTCATTGGGATCTCCCACAAGCTCTTGAAGATGAATATAAGGGATTTCTAAGTAAAAATATAGCGAAGGATTTTGCAACCTATGCTGACTTTTGCTTCAAGACATTTGGAGATAGGGTTAAGCATTGGGTGACACTTAATGAACCTTATTCATACACCATCAATGGATATAATGGTGGTACTTTTGCACCTGGTAGATGTTCTAAATATGTTGGAAATTGCACCACTGGTGACTCAAGTACAGAGCCCTACATTGTTGCTCATAACTTGATACTTTCTCATGCTGCTGCAGTCAGAGTATACAAGAGAAAATATCAGGCTCATCAAAAAGGAAAAATTGGAGTGACCTTAGTGACTCACTTCTTTGAACCATATTCCAATAGTGTTGCTGATAAAAAGGCCGCAGGTCGAGCACTTGACTTCTTTTTTGGATGGTTTGCTCATCCCATTACATATGGCCATTATCCCCAAATTATGATATCTTTGTTGGGTAAAAGACTCCCCAAATTCACAAAACTAGAATCTGTAATTATCAAAGATTCCTATGATTTTCTTGGTGTGAATTATTACTCCACATATTATGCACAAAGCAGTGCACCAAAAAATGTCGAAATGGACTACTACTCTGATATGCAAGCAACTGTCTCTCCATTGAAGAATGGTGTATCTATTGGTCCCTCGACTGATTTGACTTGGCTCTATGTCTATCCAAAGGGAATTCATGATCTTGTTACACACATAAAAAATGTATACAAGAATCCACCAGTGTACATTACTGAAAATGGCATTGCTACATATAGGAATGACTCAATTCCAGTCAATGTAGCTCGTAAAGATGGTATTAGGATTAAATACCATAATGACCATCTCCACTACCTCCTTGAAGGAATAAAACATGGTGCAAATGTGAAGGGCTACTATGCATGGTCATTTTCCGACAGCTATGAATGGGATGCAGGGTACACAGTACGATTTGGAATAATTTATGTAGATTTCGTTAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTGCAAAAGTTCCTTCTCAAGGGATGA

Protein sequence

>Msa0493550

MSLLHLWTSQFAAMRAIGPSLLYLFSLATLLAVVTGTEPQKVEPSQYASFNRSLFPHDFLFGIGSSAYQVEGASDIDGRGPSIWDTFTKQNPDKIWDHSSGNVGADFYHRYKEDLKVVKEIGLDSYRFSISWSRIFPSLVPFVTLFHWDLPQALEDEYKGFLSKNIAKDFATYADFCFKTFGDRVKHWVTLNEPYSYTINGYNGGTFAPGRCSKYVGNCTTGDSSTEPYIVAHNLILSHAAAVRVYKRKYQAHQKGKIGVTLVTHFFEPYSNSVADKKAAGRALDFFFGWFAHPITYGHYPQIMISLLGKRLPKFTKLESVIIKDSYDFLGVNYYSTYYAQSSAPKNVEMDYYSDMQATVSPLKNGVSIGPSTDLTWLYVYPKGIHDLVTHIKNVYKNPPVYITENGIATYRNDSIPVNVARKDGIRIKYHNDHLHYLLEGIKHGANVKGYYAWSFSDSYEWDAGYTVRFGIIYVDFVNNLKRYPKYSAFWLQKFLLKG*