Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825490 | sp|Q9SR43|PFBS_ARATH | 56.890 | 283 | 122 | 0 | 56 | 338 | 47 | 329 | 7.38e-120 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825490 | G7KEL5 | 96.166 | 313 | 8 | 1 | 27 | 339 | 21 | 329 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027020 | Msa0825490 | 0.804652 | 1.949249e-49 | -8.615850e-47 |
| Msa0050310 | Msa0825490 | 0.800225 | 1.592587e-48 | -8.615850e-47 |
| Msa0616890 | Msa0825490 | 0.815350 | 9.671924e-52 | -8.615850e-47 |
| Msa0646030 | Msa0825490 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0672950 | Msa0825490 | -0.814132 | 1.800132e-51 | -8.615850e-47 |
| Msa0672980 | Msa0825490 | -0.814463 | 1.520951e-51 | -8.615850e-47 |
| Msa0673620 | Msa0825490 | 0.803065 | 4.164275e-49 | -8.615850e-47 |
| Msa0676570 | Msa0825490 | 0.814440 | 1.538714e-51 | -8.615850e-47 |
| Msa0684030 | Msa0825490 | 0.800167 | 1.636398e-48 | -8.615850e-47 |
| Msa0738460 | Msa0825490 | 0.800494 | 1.403519e-48 | -8.615850e-47 |
| Msa0742370 | Msa0825490 | 0.809583 | 1.761525e-50 | -8.615850e-47 |
| Msa0779450 | Msa0825490 | 0.805667 | 1.195058e-49 | -8.615850e-47 |
| Msa0795910 | Msa0825490 | 0.815458 | 9.151066e-52 | -8.615850e-47 |
| Msa0812020 | Msa0825490 | 0.800568 | 1.356230e-48 | -8.615850e-47 |
| Msa0823480 | Msa0825490 | 0.814522 | 1.475876e-51 | -8.615850e-47 |
| Msa0825490 | Msa0826820 | 0.804361 | 2.241473e-49 | -8.615850e-47 |
| Msa0825490 | Msa0833360 | 0.814755 | 1.310513e-51 | -8.615850e-47 |
| Msa0825490 | Msa0844870 | 0.813085 | 3.059296e-51 | -8.615850e-47 |
| Msa0825490 | Msa0844970 | 0.810604 | 1.061242e-50 | -8.615850e-47 |
| Msa0825490 | Msa0864700 | 0.810438 | 1.152577e-50 | -8.615850e-47 |
| Msa0825490 | Msa1112210 | 0.829491 | 4.996819e-55 | -8.615850e-47 |
| Msa0825490 | Msa1121720 | 0.812197 | 4.784768e-51 | -8.615850e-47 |
| Msa0825490 | Msa1132880 | 0.816726 | 4.765408e-52 | -8.615850e-47 |
| Msa0825490 | Msa1162430 | -0.801085 | 1.063142e-48 | -8.615850e-47 |
| Msa0825490 | Msa1277270 | 0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa0825490 | Msa1291070 | 0.806560 | 7.752508e-50 | -8.615850e-47 |
| Msa0825490 | Msa1298170 | 0.811275 | 7.593634e-51 | -8.615850e-47 |
| Msa0825490 | Msa1326780 | 0.804419 | 2.180022e-49 | -8.615850e-47 |
| Msa0825490 | Msa1341710 | 0.800670 | 1.292795e-48 | -8.615850e-47 |
| Msa0825490 | Msa1342110 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0825490 | Msa1342360 | 0.820317 | 7.309877e-53 | -8.615850e-47 |
| Msa0825490 | Msa1356100 | 0.812095 | 5.036300e-51 | -8.615850e-47 |
| Msa0825490 | Msa1371540 | 0.811542 | 6.644605e-51 | -8.615850e-47 |
| Msa0825490 | Msa1375980 | 0.802411 | 5.681453e-49 | -8.615850e-47 |
| Msa0825490 | Msa1377980 | 0.813340 | 2.690146e-51 | -8.615850e-47 |
| Msa0825490 | Msa1379270 | 0.800349 | 1.502360e-48 | -8.615850e-47 |
| Msa0825490 | Msa1408280 | 0.813340 | 2.690146e-51 | -8.615850e-47 |
| Msa0825490 | Msa1415510 | 0.803505 | 3.376972e-49 | -8.615850e-47 |
| Msa0825490 | Msa1424250 | 0.804821 | 1.797334e-49 | -8.615850e-47 |
| Msa0138340 | Msa0825490 | 0.801399 | 9.172188e-49 | -8.615850e-47 |
| Msa0167160 | Msa0825490 | 0.808636 | 2.810398e-50 | -8.615850e-47 |
| Msa0212950 | Msa0825490 | 0.806648 | 7.427335e-50 | -8.615850e-47 |
| Msa0225280 | Msa0825490 | 0.800283 | 1.549934e-48 | -8.615850e-47 |
| Msa0236690 | Msa0825490 | 0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0375790 | Msa0825490 | -0.808340 | 3.250359e-50 | -8.615850e-47 |
| Msa0382020 | Msa0825490 | 0.803878 | 2.824701e-49 | -8.615850e-47 |
| Msa0392120 | Msa0825490 | 0.801405 | 9.144986e-49 | -8.615850e-47 |
| Msa0403740 | Msa0825490 | 0.823903 | 1.078067e-53 | -8.615850e-47 |
| Msa0419150 | Msa0825490 | 0.803639 | 3.166488e-49 | -8.615850e-47 |
| Msa0449500 | Msa0825490 | -0.810141 | 1.336106e-50 | -8.615850e-47 |
| Msa0456450 | Msa0825490 | 0.820590 | 6.330870e-53 | -8.615850e-47 |
| Msa0464980 | Msa0825490 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0471130 | Msa0825490 | 0.803284 | 3.751688e-49 | -8.615850e-47 |
| Msa0253230 | Msa0825490 | 0.812676 | 3.760910e-51 | -8.615850e-47 |
| Msa0266140 | Msa0825490 | 0.810123 | 1.347847e-50 | -8.615850e-47 |
| Msa0287480 | Msa0825490 | -0.824160 | 9.380316e-54 | -8.615850e-47 |
| Msa0304060 | Msa0825490 | 0.807759 | 4.320486e-50 | -8.615850e-47 |
| Msa0331070 | Msa0825490 | 0.808461 | 3.062980e-50 | -8.615850e-47 |
| Msa0364030 | Msa0825490 | 0.823783 | 1.150194e-53 | -8.615850e-47 |
| Msa0497680 | Msa0825490 | -0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa0525180 | Msa0825490 | 0.803127 | 4.043999e-49 | -8.615850e-47 |
| Msa0527210 | Msa0825490 | 0.803187 | 3.928863e-49 | -8.615850e-47 |
| Msa0565430 | Msa0825490 | 0.801178 | 1.017631e-48 | -8.615850e-47 |
| Msa0572730 | Msa0825490 | 0.805609 | 1.228993e-49 | -8.615850e-47 |
| Msa0580410 | Msa0825490 | 0.817337 | 3.474327e-52 | -8.615850e-47 |
| Msa0582270 | Msa0825490 | 0.804652 | 1.949601e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825490 | MtrunA17_Chr5g0447391 | 96.166 | 313 | 8 | 1 | 27 | 339 | 21 | 329 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825490 | AT3G09150.2 | 56.890 | 283 | 122 | 0 | 56 | 338 | 47 | 329 | 7.50e-121 | 351 |
| Msa0825490 | AT3G09150.1 | 56.184 | 283 | 122 | 1 | 56 | 338 | 47 | 327 | 2.17e-117 | 342 |
| Msa0825490 | AT3G09150.3 | 58.537 | 246 | 102 | 0 | 93 | 338 | 5 | 250 | 3.23e-110 | 321 |
| Msa0825490 | AT3G09150.4 | 55.310 | 226 | 101 | 0 | 56 | 281 | 47 | 272 | 2.42e-90 | 271 |
Find 82 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTCTCTTCCCCTTTAC+AGG | 0.119282 | 5_3:+65341345 | Msa0825490:CDS |
| CAGTTACCTCAGCATATTTC+AGG | 0.226358 | 5_3:-65343972 | None:intergenic |
| CAACACAACAATGTTTGTTT+TGG | 0.283890 | 5_3:-65343519 | None:intergenic |
| GGGACATCATACTCCGCTTT+TGG | 0.286944 | 5_3:-65343467 | None:intergenic |
| GGTCGAATCAATTGACAAAT+TGG | 0.292274 | 5_3:+65345527 | Msa0825490:three_prime_UTR |
| TTAAGAAGCTTTCTCTTTAA+CGG | 0.302166 | 5_3:+65344880 | Msa0825490:CDS |
| GTATAATTCCTTGAATTCTA+AGG | 0.316064 | 5_3:+65342805 | Msa0825490:CDS |
| AAATTATGATATTCTGTATT+CGG | 0.324062 | 5_3:+65344379 | Msa0825490:CDS |
| CATTTCAAGCTGACAAGATT+AGG | 0.335439 | 5_3:+65342855 | Msa0825490:CDS |
| TTTACCATCCTTAGAATTCA+AGG | 0.336886 | 5_3:-65342813 | None:intergenic |
| AATAAGAAAGGCGGTATTGC+TGG | 0.342144 | 5_3:+65344973 | Msa0825490:CDS |
| AAAGTAACAGTAAAATTTAC+AGG | 0.355139 | 5_3:+65341048 | Msa0825490:five_prime_UTR |
| ATAAAATGAAAACCTGTAAA+GGG | 0.389550 | 5_3:-65341357 | None:intergenic |
| AGAAGAAGATGGGGAGAAGA+AGG | 0.393914 | 5_3:-65341143 | None:intergenic |
| TTACTGTTACTTTACTTACT+TGG | 0.395341 | 5_3:-65341038 | None:intergenic |
| CCACGCGATTGCACTCAAAC+TGG | 0.401722 | 5_3:+65345429 | Msa0825490:three_prime_UTR |
| TAATATCATGTAATGGGTTA+AGG | 0.410294 | 5_3:-65343897 | None:intergenic |
| GATTGATAATATCATGTAAT+GGG | 0.410351 | 5_3:-65343903 | None:intergenic |
| ATAAATTCAAACTACCGTTT+CGG | 0.414541 | 5_3:-65344593 | None:intergenic |
| GTTCCAAGCAAGTTGGTAAC+TGG | 0.415040 | 5_3:-65345553 | None:intergenic |
| GAAGAAGAAGCTGAATTCAA+TGG | 0.417559 | 5_3:+65341099 | Msa0825490:exon |
| GCAGATAAATAATAAAATCT+AGG | 0.426151 | 5_3:+65345775 | Msa0825490:three_prime_UTR |
| TGGTTAAATTTCTTTGACTC+AGG | 0.429210 | 5_3:+65345449 | Msa0825490:three_prime_UTR |
| TTTAAAAGCTTAATTCCTCT+TGG | 0.429833 | 5_3:+65343949 | Msa0825490:CDS |
| TATGTATACAGAATTAAATT+CGG | 0.430642 | 5_3:+65345638 | Msa0825490:three_prime_UTR |
| AATAAAATGAAAACCTGTAA+AGG | 0.446441 | 5_3:-65341358 | None:intergenic |
| TCACCAGTTACCAACTTGCT+TGG | 0.447208 | 5_3:+65345550 | Msa0825490:three_prime_UTR |
| ATTACATGATATTATCAATC+AGG | 0.451950 | 5_3:+65343906 | Msa0825490:CDS |
| AATCTAGGAAACTTGAGGTT+AGG | 0.460614 | 5_3:+65345790 | Msa0825490:three_prime_UTR |
| AGATGGGGAGAAGAAGGAAA+AGG | 0.460615 | 5_3:-65341137 | None:intergenic |
| TGATTGATAATATCATGTAA+TGG | 0.466631 | 5_3:-65343904 | None:intergenic |
| GGTTCTGCAAAGCAAATGTT+GGG | 0.467670 | 5_3:+65345470 | Msa0825490:three_prime_UTR |
| AACAGTAAAATTTACAGGAA+TGG | 0.489912 | 5_3:+65341053 | Msa0825490:five_prime_UTR |
| TTGAATTCTAAGGATGGTAA+AGG | 0.495204 | 5_3:+65342815 | Msa0825490:CDS |
| AGGTTCTGCAAAGCAAATGT+TGG | 0.497738 | 5_3:+65345469 | Msa0825490:three_prime_UTR |
| TTCTTCAAAACACCTTGTCC+CGG | 0.497752 | 5_3:-65344747 | None:intergenic |
| GGTCAATGAATGCTGGAGCT+TGG | 0.500242 | 5_3:+65345406 | Msa0825490:intron |
| AAGAAGAAGCTGAATTCAAT+GGG | 0.503272 | 5_3:+65341100 | Msa0825490:exon |
| ATTGACCTTGCAGGTATGGT+TGG | 0.504673 | 5_3:+65344483 | Msa0825490:intron |
| ATTCGACCAATCATTCATCA+TGG | 0.509878 | 5_3:-65345512 | None:intergenic |
| CCTTCCTCGCCGTGGTAATG+AGG | 0.512676 | 5_3:-65344943 | None:intergenic |
| CCTCATTACCACGGCGAGGA+AGG | 0.512944 | 5_3:+65344943 | Msa0825490:CDS |
| CGTCTGCAGCTGTATTGTGT+TGG | 0.521388 | 5_3:+65345745 | Msa0825490:three_prime_UTR |
| ATGTTGTGCTTCAAGATTGT+GGG | 0.521421 | 5_3:-65344551 | None:intergenic |
| GAAGGAATTCTAAATAAGAA+AGG | 0.530482 | 5_3:+65344961 | Msa0825490:CDS |
| GATGCAAGCGGAAAATTCCT+TGG | 0.538917 | 5_3:+65345021 | Msa0825490:CDS |
| GGGAAGAGAACAAGTGGGTA+TGG | 0.540097 | 5_3:-65341336 | None:intergenic |
| ATAAGAAAGGCGGTATTGCT+GGG | 0.540548 | 5_3:+65344974 | Msa0825490:CDS |
| TTTAACGGAGTCGATGAACT+AGG | 0.550164 | 5_3:+65344895 | Msa0825490:CDS |
| TATCAATCAGGATGACTACA+AGG | 0.558278 | 5_3:+65343918 | Msa0825490:CDS |
| TACATATAATACAACAAGCA+TGG | 0.564173 | 5_3:-65345621 | None:intergenic |
| GTAAAGGGGAAGAGAACAAG+TGG | 0.567701 | 5_3:-65341342 | None:intergenic |
| CTTGTGAGCTTCCCTCCCCA+TGG | 0.567732 | 5_3:-65344296 | None:intergenic |
| AACTTTGTCCAAATGACTAT+CGG | 0.570194 | 5_3:-65344341 | None:intergenic |
| AATAAAATCTAGGAAACTTG+AGG | 0.572372 | 5_3:+65345785 | Msa0825490:three_prime_UTR |
| TCTAACATGGAGAGCCGAAA+CGG | 0.572541 | 5_3:+65344579 | Msa0825490:CDS |
| CATTGAGACAGAAACAATGC+AGG | 0.572862 | 5_3:+65342895 | Msa0825490:CDS |
| TGAAACTAGGATCCGGGACA+AGG | 0.575425 | 5_3:+65344735 | Msa0825490:intron |
| AATTCCTTGAATTCTAAGGA+TGG | 0.582349 | 5_3:+65342809 | Msa0825490:CDS |
| TATGTTGTGCTTCAAGATTG+TGG | 0.585564 | 5_3:-65344552 | None:intergenic |
| CTTTACCGTATTTCCAAAAG+CGG | 0.595083 | 5_3:+65343454 | Msa0825490:CDS |
| AGGAGAAGTTCCAAGCAAGT+TGG | 0.601242 | 5_3:-65345560 | None:intergenic |
| CACAACATAGATATCTAACA+TGG | 0.611644 | 5_3:+65344566 | Msa0825490:CDS |
| TTAGAATTCCTTCCTCGCCG+TGG | 0.611693 | 5_3:-65344951 | None:intergenic |
| TAAAATGAAAACCTGTAAAG+GGG | 0.613371 | 5_3:-65341356 | None:intergenic |
| AAAAGTTGGCACAAAATATG+GGG | 0.624106 | 5_3:-65343487 | None:intergenic |
| GATTGGGGACACACTTGCAA+AGG | 0.626585 | 5_3:+65344773 | Msa0825490:CDS |
| GAACAAGTGGGTATGGCGAG+AGG | 0.627450 | 5_3:-65341329 | None:intergenic |
| ACGGCAGTAAAAGAGACTGA+TGG | 0.629580 | 5_3:+65344517 | Msa0825490:CDS |
| CCAGTTTGAGTGCAATCGCG+TGG | 0.637718 | 5_3:-65345429 | None:intergenic |
| ATGGTTGGAATTGATAGCCA+CGG | 0.645627 | 5_3:+65344498 | Msa0825490:CDS |
| GGCATTCAGAGATTACTACA+AGG | 0.646161 | 5_3:+65344400 | Msa0825490:CDS |
| AATCGCCCATGGGATGCAAG+CGG | 0.651732 | 5_3:+65345009 | Msa0825490:CDS |
| TCAGCATATTTCAGGCCAAG+AGG | 0.659341 | 5_3:-65343964 | None:intergenic |
| ATCATGGAGAAAATTTGCAG+CGG | 0.659408 | 5_3:-65345496 | None:intergenic |
| TCTCAATGATCATACTACGT+AGG | 0.666289 | 5_3:-65342880 | None:intergenic |
| AGAACAGCTTCTTCTAACAG+TGG | 0.668306 | 5_3:+65341226 | Msa0825490:CDS |
| GTATACAGAATTAAATTCGG+AGG | 0.671197 | 5_3:+65345641 | Msa0825490:three_prime_UTR |
| TCTTGGCCTGAAATATGCTG+AGG | 0.671577 | 5_3:+65343966 | Msa0825490:CDS |
| GGAATTCTAAATAAGAAAGG+CGG | 0.677110 | 5_3:+65344964 | Msa0825490:CDS |
| ACAATAATAGTATAATACGA+AGG | 0.690488 | 5_3:-65345580 | None:intergenic |
| TAAAGGGGAAGAGAACAAGT+GGG | 0.738603 | 5_3:-65341341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTTTTAATAAAAAGAT+TGG | - | chr5_3:65342325-65342344 | None:intergenic | 10.0% |
| !! | CAAATTGTTATATATATTAT+TGG | + | chr5_3:65342938-65342957 | Msa0825490:intron | 10.0% |
| !! | ATTTAAATAATAATTTACCA+AGG | - | chr5_3:65345041-65345060 | None:intergenic | 10.0% |
| !!! | ACATTTTTAACTAACTTTTA+AGG | + | chr5_3:65342244-65342263 | Msa0825490:intron | 15.0% |
| !!! | CATTTTTAACTAACTTTTAA+GGG | + | chr5_3:65342245-65342264 | Msa0825490:intron | 15.0% |
| !! | TACATTATCTTATTATATGA+AGG | - | chr5_3:65343083-65343102 | None:intergenic | 15.0% |
| !! | TATTTATACATTTATACATG+TGG | - | chr5_3:65343578-65343597 | None:intergenic | 15.0% |
| !! | AACTAAAATAAAGAATAACA+AGG | - | chr5_3:65343606-65343625 | None:intergenic | 15.0% |
| !! | TTATTACAAAAACTTATCAT+GGG | + | chr5_3:65343754-65343773 | Msa0825490:intron | 15.0% |
| !! | AAATTATGATATTCTGTATT+CGG | + | chr5_3:65344379-65344398 | Msa0825490:CDS | 15.0% |
| !! | AAACAATTCAAAATTACAAA+TGG | - | chr5_3:65344686-65344705 | None:intergenic | 15.0% |
| !! | TATGTATACAGAATTAAATT+CGG | + | chr5_3:65345638-65345657 | Msa0825490:three_prime_UTR | 15.0% |
| !! | AAAGTAACAGTAAAATTTAC+AGG | + | chr5_3:65341048-65341067 | Msa0825490:five_prime_UTR | 20.0% |
| !! | ATAAAATGAAAACCTGTAAA+GGG | - | chr5_3:65341360-65341379 | None:intergenic | 20.0% |
| !! | AATAAAATGAAAACCTGTAA+AGG | - | chr5_3:65341361-65341380 | None:intergenic | 20.0% |
| !! | TATTCTTCTTCTGTATTATA+TGG | + | chr5_3:65341377-65341396 | Msa0825490:intron | 20.0% |
| !! | ATTATATGGCTTAATTTACT+TGG | + | chr5_3:65341391-65341410 | Msa0825490:intron | 20.0% |
| !! | CAAATTGAAATGTTTCATTA+GGG | + | chr5_3:65341419-65341438 | Msa0825490:intron | 20.0% |
| !! | ATCTTTATTGTAATGAGTAA+TGG | + | chr5_3:65341475-65341494 | Msa0825490:intron | 20.0% |
| !!! | TGAGTTTTTTTGTTTTGTTT+TGG | + | chr5_3:65341530-65341549 | Msa0825490:intron | 20.0% |
| !! | TCTCAGTTAAAATAAGTTTA+TGG | + | chr5_3:65341712-65341731 | Msa0825490:intron | 20.0% |
| !! | TATTAAAGTTTCTCTCATTA+AGG | - | chr5_3:65341763-65341782 | None:intergenic | 20.0% |
| !! | TCATTCATTATGAATTCTAA+TGG | - | chr5_3:65341886-65341905 | None:intergenic | 20.0% |
| !! | GTTGTTTATATAAGCTATAT+TGG | + | chr5_3:65342061-65342080 | Msa0825490:intron | 20.0% |
| !! | AGTTAGTTAAAAATGTTAGT+GGG | - | chr5_3:65342240-65342259 | None:intergenic | 20.0% |
| !! | AAGTTAGTTAAAAATGTTAG+TGG | - | chr5_3:65342241-65342260 | None:intergenic | 20.0% |
| !! | TTAATGAATATATTGGACTA+GGG | - | chr5_3:65343178-65343197 | None:intergenic | 20.0% |
| !! | TTTAATGAATATATTGGACT+AGG | - | chr5_3:65343179-65343198 | None:intergenic | 20.0% |
| !! | ACTAAAATAATAGAGAAGAA+TGG | - | chr5_3:65343387-65343406 | None:intergenic | 20.0% |
| !!! | GTTATTCTTTATTTTAGTTG+TGG | + | chr5_3:65343607-65343626 | Msa0825490:intron | 20.0% |
| !!! | AGTGATAAACTTTTATTAGA+GGG | - | chr5_3:65343735-65343754 | None:intergenic | 20.0% |
| !!! | AAGTGATAAACTTTTATTAG+AGG | - | chr5_3:65343736-65343755 | None:intergenic | 20.0% |
| !! | CTTATTACAAAAACTTATCA+TGG | + | chr5_3:65343753-65343772 | Msa0825490:intron | 20.0% |
| !!! | GATTGATAATATCATGTAAT+GGG | - | chr5_3:65343906-65343925 | None:intergenic | 20.0% |
| !!! | TGATTGATAATATCATGTAA+TGG | - | chr5_3:65343907-65343926 | None:intergenic | 20.0% |
| !! | ATTACATGATATTATCAATC+AGG | + | chr5_3:65343906-65343925 | Msa0825490:CDS | 20.0% |
| !!! | ACAGAATATCATAATTTTGT+GGG | - | chr5_3:65344376-65344395 | None:intergenic | 20.0% |
| !!! | TACAGAATATCATAATTTTG+TGG | - | chr5_3:65344377-65344396 | None:intergenic | 20.0% |
| !! | TAAAATATTATGAATTGCCA+TGG | - | chr5_3:65344441-65344460 | None:intergenic | 20.0% |
| !! | ACAATAATAGTATAATACGA+AGG | - | chr5_3:65345583-65345602 | None:intergenic | 20.0% |
| !! | GCAGATAAATAATAAAATCT+AGG | + | chr5_3:65345775-65345794 | Msa0825490:three_prime_UTR | 20.0% |
| !!! | TTACTGTTACTTTACTTACT+TGG | - | chr5_3:65341041-65341060 | None:intergenic | 25.0% |
| ! | AACAGTAAAATTTACAGGAA+TGG | + | chr5_3:65341053-65341072 | Msa0825490:five_prime_UTR | 25.0% |
| !!! | CAAATTTGTTGATTTTGCTT+TGG | + | chr5_3:65341300-65341319 | Msa0825490:CDS | 25.0% |
| ! | TAAAATGAAAACCTGTAAAG+GGG | - | chr5_3:65341359-65341378 | None:intergenic | 25.0% |
| ! | GCAAATTGAAATGTTTCATT+AGG | + | chr5_3:65341418-65341437 | Msa0825490:intron | 25.0% |
| ! | GTTTGGATTAAAATGATTGT+AGG | + | chr5_3:65341685-65341704 | Msa0825490:intron | 25.0% |
| ! | TATCTATATATAGATAGAGC+TGG | + | chr5_3:65341916-65341935 | Msa0825490:intron | 25.0% |
| ! | ATCTATATATAGATAGAGCT+GGG | + | chr5_3:65341917-65341936 | Msa0825490:intron | 25.0% |
| !! | TTAGTGGGTAATTAGTTTAT+TGG | - | chr5_3:65342225-65342244 | None:intergenic | 25.0% |
| ! | ATCTATACCCACTAATAATA+TGG | - | chr5_3:65342746-65342765 | None:intergenic | 25.0% |
| ! | GTATAATTCCTTGAATTCTA+AGG | + | chr5_3:65342805-65342824 | Msa0825490:CDS | 25.0% |
| ! | TAAATTACCAACGACTAAAA+GGG | - | chr5_3:65342980-65342999 | None:intergenic | 25.0% |
| ! | ATAAATTACCAACGACTAAA+AGG | - | chr5_3:65342981-65343000 | None:intergenic | 25.0% |
| ! | TCGGTAAAGAATATCAAATT+TGG | - | chr5_3:65343052-65343071 | None:intergenic | 25.0% |
| ! | ATAATAGAGAAGAATGGAAA+TGG | - | chr5_3:65343381-65343400 | None:intergenic | 25.0% |
| !! | ATATGTCTGATGTTTTTCTA+TGG | + | chr5_3:65343410-65343429 | Msa0825490:intron | 25.0% |
| ! | AAAAAGTTGGCACAAAATAT+GGG | - | chr5_3:65343491-65343510 | None:intergenic | 25.0% |
| !!! | TAATATCATGTAATGGGTTA+AGG | - | chr5_3:65343900-65343919 | None:intergenic | 25.0% |
| ! | TTTAAAAGCTTAATTCCTCT+TGG | + | chr5_3:65343949-65343968 | Msa0825490:CDS | 25.0% |
| !! | AAGATTTGTATGTTCAGTTT+TGG | + | chr5_3:65344027-65344046 | Msa0825490:intron | 25.0% |
| ! | AATATAAAAACACACGTGTA+CGG | - | chr5_3:65344208-65344227 | None:intergenic | 25.0% |
| ! | ATAAATTCAAACTACCGTTT+CGG | - | chr5_3:65344596-65344615 | None:intergenic | 25.0% |
| !! | ATCTCAAACTTTTGTCTAAT+TGG | + | chr5_3:65344614-65344633 | Msa0825490:intron | 25.0% |
| !! | TCTCAAACTTTTGTCTAATT+GGG | + | chr5_3:65344615-65344634 | Msa0825490:intron | 25.0% |
| !!! | TTTTTACGATTTCTTGTTTG+CGG | + | chr5_3:65344704-65344723 | Msa0825490:intron | 25.0% |
| !!! | AATATTTTGAAACTAGGATC+CGG | + | chr5_3:65344728-65344747 | Msa0825490:intron | 25.0% |
| !! | TTTTTGTAGAGAAACAAAAC+TGG | - | chr5_3:65344815-65344834 | None:intergenic | 25.0% |
| ! | TTAAGAAGCTTTCTCTTTAA+CGG | + | chr5_3:65344880-65344899 | Msa0825490:CDS | 25.0% |
| ! | GAAGGAATTCTAAATAAGAA+AGG | + | chr5_3:65344961-65344980 | Msa0825490:CDS | 25.0% |
| ! | TTTAAAGAAATTTGCCAAGA+GGG | - | chr5_3:65345084-65345103 | None:intergenic | 25.0% |
| !!! | TTTGATCTTTGGGATATTTT+AGG | + | chr5_3:65345385-65345404 | Msa0825490:intron | 25.0% |
| ! | TACATATAATACAACAAGCA+TGG | - | chr5_3:65345624-65345643 | None:intergenic | 25.0% |
| ! | AATAAAATCTAGGAAACTTG+AGG | + | chr5_3:65345785-65345804 | Msa0825490:three_prime_UTR | 25.0% |
| AAGAAGAAGCTGAATTCAAT+GGG | + | chr5_3:65341100-65341119 | Msa0825490:exon | 30.0% | |
| AAGAAGAAGAAGAAGAAGAT+GGG | - | chr5_3:65341156-65341175 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGAAACTCTATATC+CGG | + | chr5_3:65341545-65341564 | Msa0825490:intron | 30.0% |
| TTTAATCCAAACTGAACCAT+GGG | - | chr5_3:65341677-65341696 | None:intergenic | 30.0% | |
| ! | TTTTAATCCAAACTGAACCA+TGG | - | chr5_3:65341678-65341697 | None:intergenic | 30.0% |
| ! | TCAAGCTCATTTTATCCTTT+CGG | - | chr5_3:65341841-65341860 | None:intergenic | 30.0% |
| TCTATATATAGATAGAGCTG+GGG | + | chr5_3:65341918-65341937 | Msa0825490:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr5_3:65341944-65341963 | None:intergenic | 30.0% | |
| !! | AAGTTTTGTGAGACTGTTTA+GGG | - | chr5_3:65342149-65342168 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+AGG | - | chr5_3:65342150-65342169 | None:intergenic | 30.0% |
| !! | CCTGTTTAGATTGGTTTATT+TGG | - | chr5_3:65342188-65342207 | None:intergenic | 30.0% |
| CCAAATAAACCAATCTAAAC+AGG | + | chr5_3:65342185-65342204 | Msa0825490:intron | 30.0% | |
| !! | AGTTTATTGGTTCTGTACTA+GGG | - | chr5_3:65342212-65342231 | None:intergenic | 30.0% |
| !! | TAGTTTATTGGTTCTGTACT+AGG | - | chr5_3:65342213-65342232 | None:intergenic | 30.0% |
| ! | CGTTATGATTATGTGTCATT+TGG | + | chr5_3:65342386-65342405 | Msa0825490:intron | 30.0% |
| CACAACAACATTATATCACT+AGG | - | chr5_3:65342415-65342434 | None:intergenic | 30.0% | |
| ! | TTGCAATAATTTTTGCCACT+AGG | + | chr5_3:65342678-65342697 | Msa0825490:intron | 30.0% |
| TTCCTCACCATATTATTAGT+GGG | + | chr5_3:65342736-65342755 | Msa0825490:intron | 30.0% | |
| ! | TCAAGGAATTATACTTTTCC+TGG | - | chr5_3:65342799-65342818 | None:intergenic | 30.0% |
| ! | AATTCCTTGAATTCTAAGGA+TGG | + | chr5_3:65342809-65342828 | Msa0825490:CDS | 30.0% |
| TTTACCATCCTTAGAATTCA+AGG | - | chr5_3:65342816-65342835 | None:intergenic | 30.0% | |
| ! | TTGAATTCTAAGGATGGTAA+AGG | + | chr5_3:65342815-65342834 | Msa0825490:CDS | 30.0% |
| !! | CTAAAAGGGTTAATTTGTTG+AGG | - | chr5_3:65342966-65342985 | None:intergenic | 30.0% |
| ! | AAATTAACCCTTTTAGTCGT+TGG | + | chr5_3:65342970-65342989 | Msa0825490:intron | 30.0% |
| !!! | ATTTTTTCTATCAGATCCTC+AGG | + | chr5_3:65343135-65343154 | Msa0825490:intron | 30.0% |
| CAAATATCTTCTCTATTCTC+CGG | + | chr5_3:65343248-65343267 | Msa0825490:intron | 30.0% | |
| !! | TGTATTTGAACTTTGAAGTC+CGG | - | chr5_3:65343270-65343289 | None:intergenic | 30.0% |
| AATAGAAATGCCAGTTAGAT+TGG | - | chr5_3:65343311-65343330 | None:intergenic | 30.0% | |
| AAAAGTTGGCACAAAATATG+GGG | - | chr5_3:65343490-65343509 | None:intergenic | 30.0% | |
| GAAAAAGTTGGCACAAAATA+TGG | - | chr5_3:65343492-65343511 | None:intergenic | 30.0% | |
| ! | CAACACAACAATGTTTGTTT+TGG | - | chr5_3:65343522-65343541 | None:intergenic | 30.0% |
| ! | AAACGAGTTTAAAGTTGCAA+AGG | - | chr5_3:65343661-65343680 | None:intergenic | 30.0% |
| TGAAAAACTCATCACTCTTA+TGG | - | chr5_3:65344124-65344143 | None:intergenic | 30.0% | |
| TAATTAGAGTTCTCTCTCAA+AGG | + | chr5_3:65344231-65344250 | Msa0825490:intron | 30.0% | |
| !!! | TTTTTTCACCGATAGTCATT+TGG | + | chr5_3:65344333-65344352 | Msa0825490:CDS | 30.0% |
| AACTTTGTCCAAATGACTAT+CGG | - | chr5_3:65344344-65344363 | None:intergenic | 30.0% | |
| CACAACATAGATATCTAACA+TGG | + | chr5_3:65344566-65344585 | Msa0825490:CDS | 30.0% | |
| ATAAACACATGCATTTCTCA+TGG | - | chr5_3:65344663-65344682 | None:intergenic | 30.0% | |
| !!! | TGCGGAAATATTTTGAAACT+AGG | + | chr5_3:65344722-65344741 | Msa0825490:intron | 30.0% |
| !!! | ATATTTTGAAACTAGGATCC+GGG | + | chr5_3:65344729-65344748 | Msa0825490:intron | 30.0% |
| ! | GATTATTTTCCTCATTACCA+CGG | + | chr5_3:65344934-65344953 | Msa0825490:CDS | 30.0% |
| GGAATTCTAAATAAGAAAGG+CGG | + | chr5_3:65344964-65344983 | Msa0825490:CDS | 30.0% | |
| TTAAAGAAATTTGCCAAGAG+GGG | - | chr5_3:65345083-65345102 | None:intergenic | 30.0% | |
| ! | CTTTAAAGAAATTTGCCAAG+AGG | - | chr5_3:65345085-65345104 | None:intergenic | 30.0% |
| TATCATGTAGCTCAATGTAT+AGG | - | chr5_3:65345238-65345257 | None:intergenic | 30.0% | |
| !! | CGATCTTTAGAATTTCAATG+CGG | + | chr5_3:65345309-65345328 | Msa0825490:intron | 30.0% |
| !! | TATTTTAGGTCAATGAATGC+TGG | + | chr5_3:65345399-65345418 | Msa0825490:intron | 30.0% |
| TGGTTAAATTTCTTTGACTC+AGG | + | chr5_3:65345449-65345468 | Msa0825490:three_prime_UTR | 30.0% | |
| ! | TTTTCTCCATGATGAATGAT+TGG | + | chr5_3:65345506-65345525 | Msa0825490:three_prime_UTR | 30.0% |
| GTATACAGAATTAAATTCGG+AGG | + | chr5_3:65345641-65345660 | Msa0825490:three_prime_UTR | 30.0% | |
| GAAGAAGAAGCTGAATTCAA+TGG | + | chr5_3:65341099-65341118 | Msa0825490:exon | 35.0% | |
| AGAAGAAGAAGAAGAAGATG+GGG | - | chr5_3:65341155-65341174 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | - | chr5_3:65341157-65341176 | None:intergenic | 35.0% | |
| ! | GAAGCTGTTCTTTTCAACAA+CGG | - | chr5_3:65341217-65341236 | None:intergenic | 35.0% |
| !! | AATGAGTAATGGCTTGTTTG+TGG | + | chr5_3:65341486-65341505 | Msa0825490:intron | 35.0% |
| !!! | AGTTTTGCTCTGGCTTTAAT+CGG | - | chr5_3:65341578-65341597 | None:intergenic | 35.0% |
| GAGATGAAGATTTATCCGAA+AGG | + | chr5_3:65341823-65341842 | Msa0825490:intron | 35.0% | |
| AAGGATAAAATGAGCTTGAG+AGG | + | chr5_3:65341842-65341861 | Msa0825490:intron | 35.0% | |
| !! | GTTTATTGGTTCTGTACTAG+GGG | - | chr5_3:65342211-65342230 | None:intergenic | 35.0% |
| TGCAATTGAAACAGAAGATC+AGG | - | chr5_3:65342709-65342728 | None:intergenic | 35.0% | |
| GTTCCTCACCATATTATTAG+TGG | + | chr5_3:65342735-65342754 | Msa0825490:intron | 35.0% | |
| TACCCACTAATAATATGGTG+AGG | - | chr5_3:65342741-65342760 | None:intergenic | 35.0% | |
| ! | TTTTCTTATGTTGTCTTGCC+AGG | + | chr5_3:65342778-65342797 | Msa0825490:intron | 35.0% |
| CATTTCAAGCTGACAAGATT+AGG | + | chr5_3:65342855-65342874 | Msa0825490:CDS | 35.0% | |
| TCTCAATGATCATACTACGT+AGG | - | chr5_3:65342883-65342902 | None:intergenic | 35.0% | |
| GTCAAACTATGAAATCACTC+TGG | - | chr5_3:65343009-65343028 | None:intergenic | 35.0% | |
| GGCAGAAATATATACAGTGA+TGG | - | chr5_3:65343031-65343050 | None:intergenic | 35.0% | |
| TTGATATTCTTTACCGACGA+AGG | + | chr5_3:65343055-65343074 | Msa0825490:intron | 35.0% | |
| TTATATGAAGGATCCTTCGT+CGG | - | chr5_3:65343071-65343090 | None:intergenic | 35.0% | |
| GTTAGATTGGAACTGGAAAT+AGG | - | chr5_3:65343298-65343317 | None:intergenic | 35.0% | |
| ATTTCCAGTTCCAATCTAAC+TGG | + | chr5_3:65343298-65343317 | Msa0825490:intron | 35.0% | |
| GAATGGAAATGGCACAATTA+AGG | - | chr5_3:65343370-65343389 | None:intergenic | 35.0% | |
| CTTTACCGTATTTCCAAAAG+CGG | + | chr5_3:65343454-65343473 | Msa0825490:CDS | 35.0% | |
| !! | ATACTCCGCTTTTGGAAATA+CGG | - | chr5_3:65343462-65343481 | None:intergenic | 35.0% |
| !!! | CACAACAATGTTTGTTTTGG+CGG | - | chr5_3:65343519-65343538 | None:intergenic | 35.0% |
| ATTAGAGGGAAAATGATGCA+TGG | - | chr5_3:65343721-65343740 | None:intergenic | 35.0% | |
| AACCTTGTATTAATGATGCC+AGG | + | chr5_3:65343872-65343891 | Msa0825490:intron | 35.0% | |
| ACCTTGTATTAATGATGCCA+GGG | + | chr5_3:65343873-65343892 | Msa0825490:intron | 35.0% | |
| TATCAATCAGGATGACTACA+AGG | + | chr5_3:65343918-65343937 | Msa0825490:CDS | 35.0% | |
| ! | ACTTTATGCAGCATTTTCCA+TGG | + | chr5_3:65344279-65344298 | Msa0825490:intron | 35.0% |
| ! | CTTTATGCAGCATTTTCCAT+GGG | + | chr5_3:65344280-65344299 | Msa0825490:intron | 35.0% |
| ! | TTTATGCAGCATTTTCCATG+GGG | + | chr5_3:65344281-65344300 | Msa0825490:intron | 35.0% |
| TTATGAATTGCCATGGTCAT+AGG | - | chr5_3:65344434-65344453 | None:intergenic | 35.0% | |
| ATGTTGTGCTTCAAGATTGT+GGG | - | chr5_3:65344554-65344573 | None:intergenic | 35.0% | |
| TATGTTGTGCTTCAAGATTG+TGG | - | chr5_3:65344555-65344574 | None:intergenic | 35.0% | |
| ! | CTAATTGGGAGTCTTATGAT+TGG | + | chr5_3:65344629-65344648 | Msa0825490:intron | 35.0% |
| !!! | GTGTTTTGAAGAAGCTGATT+GGG | + | chr5_3:65344757-65344776 | Msa0825490:CDS | 35.0% |
| !!! | TGTTTTGAAGAAGCTGATTG+GGG | + | chr5_3:65344758-65344777 | Msa0825490:CDS | 35.0% |
| GCAGTATAAAACAGAAAGTG+AGG | - | chr5_3:65344852-65344871 | None:intergenic | 35.0% | |
| ! | CACTTTCTGTTTTATACTGC+AGG | + | chr5_3:65344852-65344871 | Msa0825490:intron | 35.0% |
| ! | CTGTCAGTTTTTCTGTTTTC+TGG | - | chr5_3:65345208-65345227 | None:intergenic | 35.0% |
| !! | CTTTAGAATTTCAATGCGGT+CGG | + | chr5_3:65345313-65345332 | Msa0825490:intron | 35.0% |
| GGCATTAATCTTGAGCTAAA+AGG | + | chr5_3:65345334-65345353 | Msa0825490:intron | 35.0% | |
| ATCATGGAGAAAATTTGCAG+CGG | - | chr5_3:65345499-65345518 | None:intergenic | 35.0% | |
| ATTCGACCAATCATTCATCA+TGG | - | chr5_3:65345515-65345534 | None:intergenic | 35.0% | |
| GGTCGAATCAATTGACAAAT+TGG | + | chr5_3:65345527-65345546 | Msa0825490:three_prime_UTR | 35.0% | |
| AGAACAGCTTCTTCTAACAG+TGG | + | chr5_3:65341226-65341245 | Msa0825490:CDS | 40.0% | |
| TAAAGGGGAAGAGAACAAGT+GGG | - | chr5_3:65341344-65341363 | None:intergenic | 40.0% | |
| AGCCAGAGCAAAACTTTGTA+TGG | + | chr5_3:65341583-65341602 | Msa0825490:intron | 40.0% | |
| ! | GTCCATACAAAGTTTTGCTC+TGG | - | chr5_3:65341588-65341607 | None:intergenic | 40.0% |
| ! | AACTTTGTATGGACTAACCG+AGG | + | chr5_3:65341594-65341613 | Msa0825490:intron | 40.0% |
| ! | ACTTTGTATGGACTAACCGA+GGG | + | chr5_3:65341595-65341614 | Msa0825490:intron | 40.0% |
| ! | CCAAAGTACTAAGCCTTCAT+CGG | + | chr5_3:65341646-65341665 | Msa0825490:intron | 40.0% |
| ! | CAAAGTACTAAGCCTTCATC+GGG | + | chr5_3:65341647-65341666 | Msa0825490:intron | 40.0% |
| AGTACATCACATCCTCAACA+CGG | - | chr5_3:65342441-65342460 | None:intergenic | 40.0% | |
| TCGGAACAATTATGTCTGTC+AGG | + | chr5_3:65342486-65342505 | Msa0825490:intron | 40.0% | |
| CATTGAGACAGAAACAATGC+AGG | + | chr5_3:65342895-65342914 | Msa0825490:CDS | 40.0% | |
| AATGCCAGTTAGATTGGAAC+TGG | - | chr5_3:65343305-65343324 | None:intergenic | 40.0% | |
| GGCACAATTAAGGATGGAAA+TGG | - | chr5_3:65343360-65343379 | None:intergenic | 40.0% | |
| GGAAATGGCACAATTAAGGA+TGG | - | chr5_3:65343366-65343385 | None:intergenic | 40.0% | |
| ! | CATGTGGATTGCAGTAACTA+GGG | - | chr5_3:65343562-65343581 | None:intergenic | 40.0% |
| ! | ACATGTGGATTGCAGTAACT+AGG | - | chr5_3:65343563-65343582 | None:intergenic | 40.0% |
| AGTTTCTGTATGCAGAAAGG+TGG | - | chr5_3:65343689-65343708 | None:intergenic | 40.0% | |
| ACCTTTCTGCATACAGAAAC+TGG | + | chr5_3:65343688-65343707 | Msa0825490:intron | 40.0% | |
| ACCAGTTTCTGTATGCAGAA+AGG | - | chr5_3:65343692-65343711 | None:intergenic | 40.0% | |
| TCCCTGGCATCATTAATACA+AGG | - | chr5_3:65343877-65343896 | None:intergenic | 40.0% | |
| CAGTTACCTCAGCATATTTC+AGG | - | chr5_3:65343975-65343994 | None:intergenic | 40.0% | |
| TGAGGACATTGAAGAACTAG+TGG | - | chr5_3:65344177-65344196 | None:intergenic | 40.0% | |
| GGCATTCAGAGATTACTACA+AGG | + | chr5_3:65344400-65344419 | Msa0825490:CDS | 40.0% | |
| GGTATTAGTTCCTATGACCA+TGG | + | chr5_3:65344421-65344440 | Msa0825490:intron | 40.0% | |
| ACTCTAACAATTGACCTTGC+AGG | + | chr5_3:65344474-65344493 | Msa0825490:intron | 40.0% | |
| AACAATTGACCTTGCAGGTA+TGG | + | chr5_3:65344479-65344498 | Msa0825490:intron | 40.0% | |
| ! | ATGGTTGGAATTGATAGCCA+CGG | + | chr5_3:65344498-65344517 | Msa0825490:CDS | 40.0% |
| ! | GAGTCTTATGATTGGTGATC+TGG | + | chr5_3:65344637-65344656 | Msa0825490:intron | 40.0% |
| TTCTTCAAAACACCTTGTCC+CGG | - | chr5_3:65344750-65344769 | None:intergenic | 40.0% | |
| !!! | GGTGTTTTGAAGAAGCTGAT+TGG | + | chr5_3:65344756-65344775 | Msa0825490:CDS | 40.0% |
| GCAAAGGTAGACTGAATTTG+AGG | + | chr5_3:65344789-65344808 | Msa0825490:intron | 40.0% | |
| TTTAACGGAGTCGATGAACT+AGG | + | chr5_3:65344895-65344914 | Msa0825490:CDS | 40.0% | |
| AATAAGAAAGGCGGTATTGC+TGG | + | chr5_3:65344973-65344992 | Msa0825490:CDS | 40.0% | |
| ATAAGAAAGGCGGTATTGCT+GGG | + | chr5_3:65344974-65344993 | Msa0825490:CDS | 40.0% | |
| !! | AGTCTTTTGAAAATCGCCCA+TGG | + | chr5_3:65344998-65345017 | Msa0825490:CDS | 40.0% |
| !! | GTCTTTTGAAAATCGCCCAT+GGG | + | chr5_3:65344999-65345018 | Msa0825490:CDS | 40.0% |
| !! | TTTCTGGTTAGTTACAGCAG+TGG | - | chr5_3:65345192-65345211 | None:intergenic | 40.0% |
| AATCTTGAGCTAAAAGGCCA+AGG | + | chr5_3:65345340-65345359 | Msa0825490:intron | 40.0% | |
| !! | TGGTGCTGACATTTGATCTT+TGG | + | chr5_3:65345374-65345393 | Msa0825490:intron | 40.0% |
| !! | GGTGCTGACATTTGATCTTT+GGG | + | chr5_3:65345375-65345394 | Msa0825490:intron | 40.0% |
| AGGTTCTGCAAAGCAAATGT+TGG | + | chr5_3:65345469-65345488 | Msa0825490:three_prime_UTR | 40.0% | |
| GGTTCTGCAAAGCAAATGTT+GGG | + | chr5_3:65345470-65345489 | Msa0825490:three_prime_UTR | 40.0% | |
| AGATGGGGAGAAGAAGGAAA+AGG | - | chr5_3:65341140-65341159 | None:intergenic | 45.0% | |
| AGAAGAAGATGGGGAGAAGA+AGG | - | chr5_3:65341146-65341165 | None:intergenic | 45.0% | |
| ! | GCTGTTCTTTTCAACAACGG+TGG | - | chr5_3:65341214-65341233 | None:intergenic | 45.0% |
| GTAAAGGGGAAGAGAACAAG+TGG | - | chr5_3:65341345-65341364 | None:intergenic | 45.0% | |
| CTTGTTCTCTTCCCCTTTAC+AGG | + | chr5_3:65341345-65341364 | Msa0825490:CDS | 45.0% | |
| GGAAACTCTATATCCGGTCT+AGG | + | chr5_3:65341551-65341570 | Msa0825490:intron | 45.0% | |
| ! | CTTTGTATGGACTAACCGAG+GGG | + | chr5_3:65341596-65341615 | Msa0825490:intron | 45.0% |
| TCAAGGTCTCATAATCCCCT+CGG | - | chr5_3:65341614-65341633 | None:intergenic | 45.0% | |
| ! | TTTGGAGTGTTCTCCTCTCA+AGG | - | chr5_3:65341631-65341650 | None:intergenic | 45.0% |
| CCGATGAAGGCTTAGTACTT+TGG | - | chr5_3:65341649-65341668 | None:intergenic | 45.0% | |
| ATCCAAACTGAACCATGGGT+TGG | - | chr5_3:65341673-65341692 | None:intergenic | 45.0% | |
| TACTAGGGGCCTGTTTAGAT+TGG | - | chr5_3:65342197-65342216 | None:intergenic | 45.0% | |
| GTTGTTGTGTTTCCGTGTTG+AGG | + | chr5_3:65342426-65342445 | Msa0825490:intron | 45.0% | |
| CTCTTCAAGCTTCTGCTACT+CGG | + | chr5_3:65342467-65342486 | Msa0825490:intron | 45.0% | |
| TGTCAACATTACACGTCCTG+AGG | - | chr5_3:65343154-65343173 | None:intergenic | 45.0% | |
| TTTCTATGGACTCTTCGTGC+AGG | + | chr5_3:65343424-65343443 | Msa0825490:intron | 45.0% | |
| TTTGGCGGTCGAGAAAAAGT+TGG | - | chr5_3:65343504-65343523 | None:intergenic | 45.0% | |
| !! | ATGTAATGGGTTAAGGTCCC+TGG | - | chr5_3:65343893-65343912 | None:intergenic | 45.0% |
| TCAGCATATTTCAGGCCAAG+AGG | - | chr5_3:65343967-65343986 | None:intergenic | 45.0% | |
| TCTTGGCCTGAAATATGCTG+AGG | + | chr5_3:65343966-65343985 | Msa0825490:CDS | 45.0% | |
| ATTGACCTTGCAGGTATGGT+TGG | + | chr5_3:65344483-65344502 | Msa0825490:intron | 45.0% | |
| CAATTCCAACCATACCTGCA+AGG | - | chr5_3:65344491-65344510 | None:intergenic | 45.0% | |
| ! | ATCAGTCTCTTTTACTGCCG+TGG | - | chr5_3:65344518-65344537 | None:intergenic | 45.0% |
| ACGGCAGTAAAAGAGACTGA+TGG | + | chr5_3:65344517-65344536 | Msa0825490:CDS | 45.0% | |
| TCTAACATGGAGAGCCGAAA+CGG | + | chr5_3:65344579-65344598 | Msa0825490:CDS | 45.0% | |
| ! | ATTTTCCGCTTGCATCCCAT+GGG | - | chr5_3:65345017-65345036 | None:intergenic | 45.0% |
| ! | AATTTTCCGCTTGCATCCCA+TGG | - | chr5_3:65345018-65345037 | None:intergenic | 45.0% |
| GATGCAAGCGGAAAATTCCT+TGG | + | chr5_3:65345021-65345040 | Msa0825490:CDS | 45.0% | |
| TATAATTGCTCCTCCCCTCT+TGG | + | chr5_3:65345067-65345086 | Msa0825490:intron | 45.0% | |
| AAGAAATTTGCCAAGAGGGG+AGG | - | chr5_3:65345080-65345099 | None:intergenic | 45.0% | |
| AGGCCAAGGTCTACTTAATG+TGG | + | chr5_3:65345354-65345373 | Msa0825490:intron | 45.0% | |
| GCACCACATTAAGTAGACCT+TGG | - | chr5_3:65345360-65345379 | None:intergenic | 45.0% | |
| ! | TCACCAGTTACCAACTTGCT+TGG | + | chr5_3:65345550-65345569 | Msa0825490:three_prime_UTR | 45.0% |
| !! | GTTCCAAGCAAGTTGGTAAC+TGG | - | chr5_3:65345556-65345575 | None:intergenic | 45.0% |
| AGGAGAAGTTCCAAGCAAGT+TGG | - | chr5_3:65345563-65345582 | None:intergenic | 45.0% | |
| !!! | ATTAAAAAATAGTTTTTATA+TGG | + | chr5_3:65342333-65342352 | Msa0825490:intron | 5.0% |
| !! | AATTAAACTAAATTTAAATA+TGG | - | chr5_3:65342628-65342647 | None:intergenic | 5.0% |
| !!! | AATATTTTTAATGAATATAT+TGG | - | chr5_3:65343185-65343204 | None:intergenic | 5.0% |
| GGGAAGAGAACAAGTGGGTA+TGG | - | chr5_3:65341339-65341358 | None:intergenic | 50.0% | |
| ! | GGCTTTAATCGGTCCTAGAC+CGG | - | chr5_3:65341567-65341586 | None:intergenic | 50.0% |
| GGGGATTATGAGACCTTGAG+AGG | + | chr5_3:65341615-65341634 | Msa0825490:intron | 50.0% | |
| ACTAACTCCCAAGAGAGCAG+TGG | + | chr5_3:65342275-65342294 | Msa0825490:intron | 50.0% | |
| CTAACTCCCAAGAGAGCAGT+GGG | + | chr5_3:65342276-65342295 | Msa0825490:intron | 50.0% | |
| TACCAACCCACTGCTCTCTT+GGG | - | chr5_3:65342285-65342304 | None:intergenic | 50.0% | |
| TTACCAACCCACTGCTCTCT+TGG | - | chr5_3:65342286-65342305 | None:intergenic | 50.0% | |
| !! | GAAGATCAGGAAGTGCCTAG+TGG | - | chr5_3:65342696-65342715 | None:intergenic | 50.0% |
| ! | TGGACTCTTCGTGCAGGTTT+TGG | + | chr5_3:65343430-65343449 | Msa0825490:intron | 50.0% |
| ! | GGGACATCATACTCCGCTTT+TGG | - | chr5_3:65343470-65343489 | None:intergenic | 50.0% |
| ACGTGTACGGTGTATGCATG+AGG | - | chr5_3:65344195-65344214 | None:intergenic | 50.0% | |
| ! | ATGCAGCATTTTCCATGGGG+AGG | + | chr5_3:65344284-65344303 | Msa0825490:intron | 50.0% |
| ! | TGCAGCATTTTCCATGGGGA+GGG | + | chr5_3:65344285-65344304 | Msa0825490:intron | 50.0% |
| TGAAACTAGGATCCGGGACA+AGG | + | chr5_3:65344735-65344754 | Msa0825490:intron | 50.0% | |
| GATTGGGGACACACTTGCAA+AGG | + | chr5_3:65344773-65344792 | Msa0825490:CDS | 50.0% | |
| ! | TTTTCCTCATTACCACGGCG+AGG | + | chr5_3:65344939-65344958 | Msa0825490:CDS | 50.0% |
| TTAGAATTCCTTCCTCGCCG+TGG | - | chr5_3:65344954-65344973 | None:intergenic | 50.0% | |
| ! | TGGTTAGTTACAGCAGTGGC+AGG | - | chr5_3:65345188-65345207 | None:intergenic | 50.0% |
| GGTCAATGAATGCTGGAGCT+TGG | + | chr5_3:65345406-65345425 | Msa0825490:intron | 50.0% | |
| CGTCTGCAGCTGTATTGTGT+TGG | + | chr5_3:65345745-65345764 | Msa0825490:three_prime_UTR | 50.0% | |
| GAACAAGTGGGTATGGCGAG+AGG | - | chr5_3:65341332-65341351 | None:intergenic | 55.0% | |
| GGCCAACCCATGGTTCAGTT+TGG | + | chr5_3:65341668-65341687 | Msa0825490:intron | 55.0% | |
| AGATAGAGCTGGGGCCTGTT+TGG | + | chr5_3:65341927-65341946 | Msa0825490:intron | 55.0% | |
| AATCGCCCATGGGATGCAAG+CGG | + | chr5_3:65345009-65345028 | Msa0825490:CDS | 55.0% | |
| CCAGTTTGAGTGCAATCGCG+TGG | - | chr5_3:65345432-65345451 | None:intergenic | 55.0% | |
| CCACGCGATTGCACTCAAAC+TGG | + | chr5_3:65345429-65345448 | Msa0825490:three_prime_UTR | 55.0% | |
| !! | ACCATGGGTTGGCCCGATGA+AGG | - | chr5_3:65341662-65341681 | None:intergenic | 60.0% |
| CTCCCAAGAGAGCAGTGGGT+TGG | + | chr5_3:65342280-65342299 | Msa0825490:intron | 60.0% | |
| CTTGTGAGCTTCCCTCCCCA+TGG | - | chr5_3:65344299-65344318 | None:intergenic | 60.0% | |
| ! | CCTTCCTCGCCGTGGTAATG+AGG | - | chr5_3:65344946-65344965 | None:intergenic | 60.0% |
| CCTCATTACCACGGCGAGGA+AGG | + | chr5_3:65344943-65344962 | Msa0825490:CDS | 60.0% | |
| GCCTTCATCGGGCCAACCCA+TGG | + | chr5_3:65341658-65341677 | Msa0825490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 65341013 | 65345812 | 65341013 | ID=Msa0825490;Name=Msa0825490 |
| chr5_3 | mRNA | 65341013 | 65345812 | 65341013 | ID=Msa0825490-mRNA-1;Parent=Msa0825490;Name=Msa0825490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=105|1|1|1|0.62|0.77|9|398|339 |
| chr5_3 | exon | 65341013 | 65341366 | 65341013 | ID=Msa0825490-mRNA-1:exon:20474;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65342800 | 65342916 | 65342800 | ID=Msa0825490-mRNA-1:exon:20475;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65343446 | 65343540 | 65343446 | ID=Msa0825490-mRNA-1:exon:20476;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65343894 | 65343987 | 65343894 | ID=Msa0825490-mRNA-1:exon:20477;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65344290 | 65344421 | 65344290 | ID=Msa0825490-mRNA-1:exon:20478;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65344496 | 65344600 | 65344496 | ID=Msa0825490-mRNA-1:exon:20479;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65344744 | 65344794 | 65344744 | ID=Msa0825490-mRNA-1:exon:20480;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65344874 | 65345042 | 65344874 | ID=Msa0825490-mRNA-1:exon:20481;Parent=Msa0825490-mRNA-1 |
| chr5_3 | exon | 65345407 | 65345812 | 65345407 | ID=Msa0825490-mRNA-1:exon:20482;Parent=Msa0825490-mRNA-1 |
| chr5_3 | five_prime_UTR | 65341013 | 65341117 | 65341013 | ID=Msa0825490-mRNA-1:five_prime_utr;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65341118 | 65341366 | 65341118 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65342800 | 65342916 | 65342800 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65343446 | 65343540 | 65343446 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65343894 | 65343987 | 65343894 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65344290 | 65344421 | 65344290 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65344496 | 65344600 | 65344496 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65344744 | 65344794 | 65344744 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65344874 | 65345042 | 65344874 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | CDS | 65345407 | 65345414 | 65345407 | ID=Msa0825490-mRNA-1:cds;Parent=Msa0825490-mRNA-1 |
| chr5_3 | three_prime_UTR | 65345415 | 65345812 | 65345415 | ID=Msa0825490-mRNA-1:three_prime_utr;Parent=Msa0825490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
