AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844870 MtrunA17_Chr5g0416091 89.015 264 24 4 1 262 1 261 8.33e-152 424
Msa0844870 MtrunA17_Chr8g0362331 63.918 194 63 1 76 262 74 267 2.21e-85 255
Msa0844870 MtrunA17_Chr7g0274781 40.426 188 98 3 82 262 46 226 1.21e-47 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844870 AT1G14410.1 59.144 257 85 5 11 262 22 263 2.11e-96 283
Msa0844870 AT2G02740.1 54.152 277 103 8 1 262 1 268 2.91e-89 266
Msa0844870 AT1G71260.1 41.935 186 103 2 82 262 53 238 1.28e-51 169

Find 82 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTTACTTCTGGCTTTA+TGG 0.135973 5_4:-23507890 None:intergenic
TGAGATGTTAGTATCATTAT+TGG 0.164426 5_4:+23508083 Msa0844870:three_prime_UTR
TACTCTCTATCCTTTCTTCT+TGG 0.176060 5_4:-23501986 None:intergenic
AAAATTTCTCAAACAATTCT+AGG 0.176337 5_4:-23508061 None:intergenic
GAGTGAGTTGGGACTGAAAA+TGG 0.219662 5_4:-23502070 None:intergenic
GGCTGGCGACAGGTGAGGTT+GGG 0.243945 5_4:-23502151 None:intergenic
TCTTCTTCATCTTCCTCTTC+AGG 0.255568 5_4:+23502223 Msa0844870:CDS
AACTACCTTCTACCCATAAA+AGG 0.287714 5_4:-23505891 None:intergenic
TGAGGTGGAGGGAATGGTTT+GGG 0.292578 5_4:-23502187 None:intergenic
TTTATCATGCCATGCCTCTT+AGG 0.293213 5_4:+23507847 Msa0844870:CDS
TTGGTCTGTAGATTAGTAAA+TGG 0.293452 5_4:-23501939 None:intergenic
TAAACTATCTGTGGATGAAA+TGG 0.298088 5_4:+23505818 Msa0844870:CDS
CGGTTTGCAATATTTACTTC+TGG 0.305894 5_4:-23507898 None:intergenic
ACATCCAATGAAGTGAATTC+TGG 0.345501 5_4:-23502483 None:intergenic
TGCAATATTCTAATGACTAT+AGG 0.352382 5_4:+23507967 Msa0844870:three_prime_UTR
TTGAGGTGGAGGGAATGGTT+TGG 0.363411 5_4:-23502188 None:intergenic
AGTCTTCTTCTCTTCTTCTT+CGG 0.365023 5_4:-23507918 None:intergenic
ACCTCCAGAATTCACTTCAT+TGG 0.371286 5_4:+23502479 Msa0844870:CDS
GGTTGAGGGCGTTGAGGTGG+AGG 0.372390 5_4:-23502199 None:intergenic
TGGTCTGTAGATTAGTAAAT+GGG 0.382150 5_4:-23501938 None:intergenic
GCTTTCTGCTCCAATCATAT+TGG 0.384421 5_4:-23502696 None:intergenic
AGGCTGGCGACAGGTGAGGT+TGG 0.402112 5_4:-23502152 None:intergenic
ATCCATTTCTTTACCTCGTG+TGG 0.411585 5_4:+23502114 Msa0844870:CDS
GCTGGCGACAGGTGAGGTTG+GGG 0.411845 5_4:-23502150 None:intergenic
TGGGTTTGTAGTTGTTGTAT+AGG 0.416258 5_4:-23502050 None:intergenic
CTACAGTTTGCTCCTTCTGC+CGG 0.434257 5_4:+23502667 Msa0844870:CDS
AGACTTTGAATGGAACAGAT+AGG 0.435531 5_4:+23507936 Msa0844870:CDS
ATGGGAAATCTAATTAATCT+TGG 0.439383 5_4:+23505837 Msa0844870:CDS
GGGCGTTGAGGTGGAGGGAA+TGG 0.441709 5_4:-23502193 None:intergenic
AGTGAGTTGGGACTGAAAAT+GGG 0.444235 5_4:-23502069 None:intergenic
GAAGGTTGAGGGCGTTGAGG+TGG 0.449595 5_4:-23502202 None:intergenic
CGACCAACGTAAACCCTTAG+TGG 0.451263 5_4:-23502414 None:intergenic
GAAGAGAAGAAGACTTTGAA+TGG 0.455608 5_4:+23507926 Msa0844870:CDS
AAACTATCTGTGGATGAAAT+GGG 0.464987 5_4:+23505819 Msa0844870:CDS
CCAATCATATTGGCGAAAAC+CGG 0.464995 5_4:-23502686 None:intergenic
GAAGATGAAGAAGAAGGTTG+AGG 0.468336 5_4:-23502214 None:intergenic
AAGATGAAGAAGAAGGTTGA+GGG 0.470886 5_4:-23502213 None:intergenic
GAGAAAGGGTATGTTATTGA+AGG 0.478743 5_4:-23501911 None:intergenic
GAAGTGAATTCTGGAGGTAC+AGG 0.480485 5_4:-23502474 None:intergenic
TCATGCCATGCCTCTTAGGT+TGG 0.480625 5_4:+23507851 Msa0844870:CDS
TAGTAAATGGGAAATGAGAA+AGG 0.483317 5_4:-23501926 None:intergenic
CAGTTAGAGAATTGCCACTA+AGG 0.486519 5_4:+23502400 Msa0844870:intron
ACCCACACGAGGTAAAGAAA+TGG 0.501210 5_4:-23502116 None:intergenic
TGTTGATGAAAGAGTGAGTT+GGG 0.501539 5_4:-23502081 None:intergenic
GTGGAGGGAATGGTTTGGGT+TGG 0.510791 5_4:-23502183 None:intergenic
GAAAAGCTCAGGCTGGCGAC+AGG 0.513301 5_4:-23502161 None:intergenic
GGTTTGGGTTGGAAAAGCTC+AGG 0.523617 5_4:-23502172 None:intergenic
TTGGTCGTTCAGTTTACAAA+GGG 0.527190 5_4:+23502430 Msa0844870:CDS
GACTTTGAATGGAACAGATA+GGG 0.528923 5_4:+23507937 Msa0844870:CDS
CAAAGGCATTCCAACCTAAG+AGG 0.533103 5_4:-23507861 None:intergenic
ACTTAGTTTAAACATGTGAC+CGG 0.533326 5_4:-23506756 None:intergenic
GTAGTTGTTGTATAGGACTG+TGG 0.535088 5_4:-23502043 None:intergenic
ATCTAATTAATCTTGGTGCA+AGG 0.535516 5_4:+23505844 Msa0844870:CDS
AGTTAGAGAATTGCCACTAA+GGG 0.538677 5_4:+23502401 Msa0844870:intron
CTGGCGACAGGTGAGGTTGG+GGG 0.539648 5_4:-23502149 None:intergenic
TCTAATTAATCTTGGTGCAA+GGG 0.543790 5_4:+23505845 Msa0844870:CDS
GAAGAAGGTTGAGGGCGTTG+AGG 0.544567 5_4:-23502205 None:intergenic
TCCATTTCTTTACCTCGTGT+GGG 0.547204 5_4:+23502115 Msa0844870:CDS
ACATAAACAACCAAGAAGAA+AGG 0.550458 5_4:+23501976 Msa0844870:five_prime_UTR
ATATGATTGGAGCAGAAAGC+AGG 0.558461 5_4:+23502699 Msa0844870:CDS
GTTGAGGGCGTTGAGGTGGA+GGG 0.560816 5_4:-23502198 None:intergenic
GACTTGTTATGCAGTGATGA+AGG 0.561694 5_4:+23506689 Msa0844870:intron
GTTAATAAGATCATACAAGA+TGG 0.562596 5_4:-23508003 None:intergenic
TGGCTTTATGGAGTCAGCAA+AGG 0.562818 5_4:-23507878 None:intergenic
GAAGAGGAAGATGAAGAAGA+AGG 0.568627 5_4:-23502220 None:intergenic
AGTAAATGGGAAATGAGAAA+GGG 0.574990 5_4:-23501925 None:intergenic
TGACCGGAACCGTCGTGAAG+TGG 0.576610 5_4:-23506740 None:intergenic
TGGGTTGGAAAAGCTCAGGC+TGG 0.582714 5_4:-23502168 None:intergenic
GCATTCAAGATATCTAAAGA+AGG 0.582740 5_4:+23502634 Msa0844870:CDS
CAAAGGGAAAGCTGTGCTCA+CGG 0.588472 5_4:+23502446 Msa0844870:CDS
ACAGGTATTTAAACTATCTG+TGG 0.595168 5_4:+23505809 Msa0844870:intron
GTTGGTCGTTCAGTTTACAA+AGG 0.607110 5_4:+23502429 Msa0844870:CDS
TATTGGCGAAAACCGGCAGA+AGG 0.609525 5_4:-23502679 None:intergenic
GCATTCCAACCTAAGAGGCA+TGG 0.612818 5_4:-23507856 None:intergenic
GTTGTTGTATAGGACTGTGG+TGG 0.614800 5_4:-23502040 None:intergenic
GCTCAGGCTGGCGACAGGTG+AGG 0.615879 5_4:-23502156 None:intergenic
ATTTATCCCTGTCACAAAAG+CGG 0.631693 5_4:+23506955 Msa0844870:CDS
GAGAAAGTGGGACCCACACG+AGG 0.632860 5_4:-23502127 None:intergenic
TCCAATGAAGTGAATTCTGG+AGG 0.645641 5_4:-23502480 None:intergenic
GTGTTGATGAAAGAGTGAGT+TGG 0.675389 5_4:-23502082 None:intergenic
TTGCCACTAAGGGTTTACGT+TGG 0.697937 5_4:+23502411 Msa0844870:CDS
AAGGTGGAGCCACTTCACGA+CGG 0.712557 5_4:+23506731 Msa0844870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAAAGAAAG+GGG + chr5_4:23503382-23503401 Msa0844870:intron 10.0%
!!! CTTTATAATTTTAAAGAATT+TGG + chr5_4:23506486-23506505 Msa0844870:intron 10.0%
!! CAATAAATATTTACTATTTA+TGG + chr5_4:23506601-23506620 Msa0844870:intron 10.0%
!!! CAAATTTTGTAAAATTATAA+AGG - chr5_4:23506662-23506681 None:intergenic 10.0%
!!! ATTATTGTTTTTTATCATCA+TGG + chr5_4:23502329-23502348 Msa0844870:intron 15.0%
!!! TGTTTTTTTTGTTTAATCAT+AGG + chr5_4:23502507-23502526 Msa0844870:intron 15.0%
!!! TTTAAACCTATTTTCTATTA+TGG + chr5_4:23504222-23504241 Msa0844870:intron 15.0%
!! AAACTTTAGTTATGATTAAT+TGG + chr5_4:23504578-23504597 Msa0844870:intron 15.0%
!!! ATAAAAATTTGAATGTTTTG+AGG + chr5_4:23504637-23504656 Msa0844870:intron 15.0%
!!! AATATACAACATTTTAACTT+AGG - chr5_4:23505311-23505330 None:intergenic 15.0%
!! ATTCAGTAAAATAATTAGAA+GGG - chr5_4:23505928-23505947 None:intergenic 15.0%
!!! AGCATTATTTTTTTTTAAAC+AGG - chr5_4:23506406-23506425 None:intergenic 15.0%
!!! ATTGAATACTTTTAACTATT+CGG - chr5_4:23506435-23506454 None:intergenic 15.0%
!!! AATTTTAAAGAATTTGGAAA+AGG + chr5_4:23506492-23506511 Msa0844870:intron 15.0%
!! AAATTGTTAATATATACTCT+TGG + chr5_4:23506830-23506849 Msa0844870:intron 15.0%
!!! TTTTTTATTTTTACCTGAAG+AGG - chr5_4:23502239-23502258 None:intergenic 20.0%
!! TAACTTATGACATACAATAA+TGG + chr5_4:23502286-23502305 Msa0844870:intron 20.0%
!! AACTTATGACATACAATAAT+GGG + chr5_4:23502287-23502306 Msa0844870:intron 20.0%
!!! TCTAAATTTCTCATGTTTTA+TGG + chr5_4:23502549-23502568 Msa0844870:intron 20.0%
!!! TTTTATGGAATTATGAATGT+TGG + chr5_4:23502564-23502583 Msa0844870:intron 20.0%
!! GTTATTGTTCTTCTATAATT+TGG + chr5_4:23502725-23502744 Msa0844870:intron 20.0%
!! GTTTGTAAAAAAATTGCTAT+TGG + chr5_4:23503218-23503237 Msa0844870:intron 20.0%
!!! TGAAAGAGTCTAAAATTTAA+TGG + chr5_4:23504763-23504782 Msa0844870:intron 20.0%
!!! TTTCATTTTAAACATATCTC+CGG - chr5_4:23504805-23504824 None:intergenic 20.0%
!! ATTATTCAGATATTGCATTT+CGG - chr5_4:23504853-23504872 None:intergenic 20.0%
!! AATGCAATATCTGAATAATA+AGG + chr5_4:23504854-23504873 Msa0844870:intron 20.0%
!! ACTGTAATATTATTTATGCA+TGG + chr5_4:23505503-23505522 Msa0844870:intron 20.0%
!! CTGTAATATTATTTATGCAT+GGG + chr5_4:23505504-23505523 Msa0844870:intron 20.0%
!! TTTACAAAATGTACTATACA+AGG - chr5_4:23505691-23505710 None:intergenic 20.0%
!! CATTCAGTAAAATAATTAGA+AGG - chr5_4:23505929-23505948 None:intergenic 20.0%
!! TATGCTATAAACACTTAATT+AGG + chr5_4:23506307-23506326 Msa0844870:intron 20.0%
!!! TAAAGTGAGAAAAGTTTTAA+AGG + chr5_4:23506712-23506731 Msa0844870:CDS 20.0%
!!! AAACTTTTTCTAAAATAAGC+TGG - chr5_4:23507131-23507150 None:intergenic 20.0%
!! AGTAAAAAAAACTACATGTA+TGG - chr5_4:23507435-23507454 None:intergenic 20.0%
!! AGTAAAAAAAACTACATGTA+TGG - chr5_4:23507435-23507454 None:intergenic 20.0%
!!! TGTTTTTTAATGTAGCTTTT+AGG + chr5_4:23507645-23507664 Msa0844870:intron 20.0%
!! AAAATTTCTCAAACAATTCT+AGG - chr5_4:23508064-23508083 None:intergenic 20.0%
!!! TATGTTCTGTTACTGATTTT+TGG - chr5_4:23501961-23501980 None:intergenic 25.0%
!!! GGTAAAGAAATGGATTTTTT+GGG - chr5_4:23502109-23502128 None:intergenic 25.0%
!!! AGGTAAAGAAATGGATTTTT+TGG - chr5_4:23502110-23502129 None:intergenic 25.0%
! TTGGACTGTTTATTTAGTTA+TGG + chr5_4:23502583-23502602 Msa0844870:intron 25.0%
!! GTACTTATTTATTAGTCTCT+TGG + chr5_4:23503068-23503087 Msa0844870:intron 25.0%
! CAAAAAATGGTGTAAATGTA+GGG - chr5_4:23503154-23503173 None:intergenic 25.0%
!!! CAATTTTTTTACAAACTGCA+GGG - chr5_4:23504126-23504145 None:intergenic 25.0%
!!! CAATTTTTTTACAAACTGCA+GGG + chr5_4:23504126-23504145 Msa0844870:intron 25.0%
! AATAGGTTTAAATGTGTCAT+TGG - chr5_4:23504214-23504233 None:intergenic 25.0%
! TTGATGCCATAATAGAAAAT+AGG - chr5_4:23504231-23504250 None:intergenic 25.0%
! TGACTAAACAAAACTTCTAA+AGG - chr5_4:23504420-23504439 None:intergenic 25.0%
!! TCATAACTAAAGTTTTCGTA+GGG - chr5_4:23504573-23504592 None:intergenic 25.0%
!! ATCATAACTAAAGTTTTCGT+AGG - chr5_4:23504574-23504593 None:intergenic 25.0%
!! TTCATTTTAAACATATCTCC+GGG - chr5_4:23504804-23504823 None:intergenic 25.0%
! AAATATTCTGCAAGCAAAAT+GGG - chr5_4:23505261-23505280 None:intergenic 25.0%
! TAAATATTCTGCAAGCAAAA+TGG - chr5_4:23505262-23505281 None:intergenic 25.0%
! AACTGTAATATTATTTGTGC+AGG + chr5_4:23505598-23505617 Msa0844870:intron 25.0%
! ATTACGTAAAAGCAAATTGA+TGG - chr5_4:23505769-23505788 None:intergenic 25.0%
! ATGGGAAATCTAATTAATCT+TGG + chr5_4:23505837-23505856 Msa0844870:CDS 25.0%
!!! GCTATTTTCATTAACTATTC+TGG - chr5_4:23506201-23506220 None:intergenic 25.0%
! GAAAAGGATAACATATGTTA+AGG + chr5_4:23506508-23506527 Msa0844870:intron 25.0%
!! CAACTCTTTGAGAAATAAAT+TGG - chr5_4:23506566-23506585 None:intergenic 25.0%
! ATATATTAACAATTTCCCGA+TGG - chr5_4:23506825-23506844 None:intergenic 25.0%
! ATTGAAGTTATATTAGTGCA+GGG - chr5_4:23506870-23506889 None:intergenic 25.0%
! AATTGAAGTTATATTAGTGC+AGG - chr5_4:23506871-23506890 None:intergenic 25.0%
!!! ATTGTTTTGTCAATTTTCGA+AGG + chr5_4:23506896-23506915 Msa0844870:intron 25.0%
!!! ATCTACACTTGAATTTTAGT+GGG - chr5_4:23507087-23507106 None:intergenic 25.0%
!! TATCTACACTTGAATTTTAG+TGG - chr5_4:23507088-23507107 None:intergenic 25.0%
! ATATCACCTTACTTATTTAG+AGG + chr5_4:23507105-23507124 Msa0844870:intron 25.0%
! AAATGTGATTGTATCTTCTA+TGG - chr5_4:23507192-23507211 None:intergenic 25.0%
! AAAACTTGTCTAGCTAAATT+AGG + chr5_4:23507270-23507289 Msa0844870:intron 25.0%
!! GTCTAAGACAGTTTATAATT+AGG + chr5_4:23507354-23507373 Msa0844870:intron 25.0%
! TAATTAGGAATGAAAAGTTC+CGG + chr5_4:23507369-23507388 Msa0844870:intron 25.0%
! AACATTGAATAAACGTAATC+CGG - chr5_4:23507391-23507410 None:intergenic 25.0%
! TTGTGATTCTTGTAAATATG+TGG + chr5_4:23507409-23507428 Msa0844870:intron 25.0%
! AAGCTACATTAAAAAACAAC+TGG - chr5_4:23507643-23507662 None:intergenic 25.0%
!!! AATATTTACTTCTGGCTTTA+TGG - chr5_4:23507893-23507912 None:intergenic 25.0%
! TGCAATATTCTAATGACTAT+AGG + chr5_4:23507967-23507986 Msa0844870:three_prime_UTR 25.0%
! GTTAATAAGATCATACAAGA+TGG - chr5_4:23508006-23508025 None:intergenic 25.0%
! TGAGATGTTAGTATCATTAT+TGG + chr5_4:23508083-23508102 Msa0844870:three_prime_UTR 25.0%
AGTAAATGGGAAATGAGAAA+GGG - chr5_4:23501928-23501947 None:intergenic 30.0%
TAGTAAATGGGAAATGAGAA+AGG - chr5_4:23501929-23501948 None:intergenic 30.0%
TGGTCTGTAGATTAGTAAAT+GGG - chr5_4:23501941-23501960 None:intergenic 30.0%
TTGGTCTGTAGATTAGTAAA+TGG - chr5_4:23501942-23501961 None:intergenic 30.0%
ACATAAACAACCAAGAAGAA+AGG + chr5_4:23501976-23501995 Msa0844870:five_prime_UTR 30.0%
!! TTTTGTGTGTTTTTGTAGTC+AGG + chr5_4:23502610-23502629 Msa0844870:intron 30.0%
!! TTTGTGTGTTTTTGTAGTCA+GGG + chr5_4:23502611-23502630 Msa0844870:intron 30.0%
GCATTCAAGATATCTAAAGA+AGG + chr5_4:23502634-23502653 Msa0844870:CDS 30.0%
!! GTTCTTCTATAATTTGGTGT+CGG + chr5_4:23502731-23502750 Msa0844870:intron 30.0%
CTTAGTGGAATTTGAACAAA+CGG + chr5_4:23502822-23502841 Msa0844870:intron 30.0%
TTGTACTAAATCTAGTATCG+CGG - chr5_4:23502856-23502875 None:intergenic 30.0%
AGTACAATGCTGTCAAATAT+TGG + chr5_4:23502869-23502888 Msa0844870:intron 30.0%
! TGTCAAATATTGGCTACTAT+AGG + chr5_4:23502879-23502898 Msa0844870:intron 30.0%
AAATCCAATGTTGTCAATTG+TGG - chr5_4:23503047-23503066 None:intergenic 30.0%
TCTAGGTTTAAATGTGTCAT+TGG + chr5_4:23503127-23503146 Msa0844870:intron 30.0%
CCAAAAAATGGTGTAAATGT+AGG - chr5_4:23503155-23503174 None:intergenic 30.0%
!!! CCTACATTTACACCATTTTT+TGG + chr5_4:23503152-23503171 Msa0844870:intron 30.0%
!!! GCAATTTTTTTACAAACTGC+AGG - chr5_4:23504125-23504144 None:intergenic 30.0%
AAAACACGATACAAAGAGAT+AGG + chr5_4:23503418-23503437 Msa0844870:intron 30.0%
AAACACGATACAAAGAGATA+GGG + chr5_4:23503419-23503438 Msa0844870:intron 30.0%
ATTACACTGAAGTAGAATCA+TGG - chr5_4:23503596-23503615 None:intergenic 30.0%
AATTGCAATTGCACAAATCT+TGG - chr5_4:23503791-23503810 None:intergenic 30.0%
TGATATGCAGTCCTTAAAAT+TGG + chr5_4:23503829-23503848 Msa0844870:intron 30.0%
! GATTTGAGCATCCAATTTTA+AGG - chr5_4:23503843-23503862 None:intergenic 30.0%
TTTAACAGCAGTTTAACAGA+AGG + chr5_4:23504095-23504114 Msa0844870:intron 30.0%
!!! GCAATTTTTTTACAAACTGC+AGG + chr5_4:23504125-23504144 Msa0844870:intron 30.0%
!!! CCTTGCACTTTTTTTTTGTT+TGG - chr5_4:23504159-23504178 None:intergenic 30.0%
! CCAAACAAAAAAAAAGTGCA+AGG + chr5_4:23504156-23504175 Msa0844870:intron 30.0%
CAAAAAATGGTGTAAATGCA+GGG + chr5_4:23504187-23504206 Msa0844870:intron 30.0%
CTACATGTTATATCTTCAGT+GGG - chr5_4:23504255-23504274 None:intergenic 30.0%
TCTACATGTTATATCTTCAG+TGG - chr5_4:23504256-23504275 None:intergenic 30.0%
!!! TGATCCTACTTAGTTTTGAA+TGG + chr5_4:23504684-23504703 Msa0844870:intron 30.0%
ATAGCCATTCAAAACTAAGT+AGG - chr5_4:23504691-23504710 None:intergenic 30.0%
!!! TGGTTAGTTTTTTTTCTTCC+CGG + chr5_4:23504783-23504802 Msa0844870:intron 30.0%
!! TAGGAACTAAGAAGTACTAT+GGG - chr5_4:23504978-23504997 None:intergenic 30.0%
TGTCACAATTCGAAATTGAT+AGG - chr5_4:23505231-23505250 None:intergenic 30.0%
GCATATAATCTCTGTAAGAT+TGG - chr5_4:23505406-23505425 None:intergenic 30.0%
TCTTACAGAGATTATATGCA+TGG + chr5_4:23505407-23505426 Msa0844870:intron 30.0%
CTTACAGAGATTATATGCAT+GGG + chr5_4:23505408-23505427 Msa0844870:intron 30.0%
ATAACTTTGAACCTAACTCA+AGG + chr5_4:23505453-23505472 Msa0844870:intron 30.0%
TAACTTTGAACCTAACTCAA+GGG + chr5_4:23505454-23505473 Msa0844870:intron 30.0%
TCACCAAACATAAGCAAAAA+CGG - chr5_4:23505634-23505653 None:intergenic 30.0%
! GCTTATGTTTGGTGAAATTA+AGG + chr5_4:23505639-23505658 Msa0844870:intron 30.0%
ACAGGTATTTAAACTATCTG+TGG + chr5_4:23505809-23505828 Msa0844870:intron 30.0%
TAAACTATCTGTGGATGAAA+TGG + chr5_4:23505818-23505837 Msa0844870:CDS 30.0%
AAACTATCTGTGGATGAAAT+GGG + chr5_4:23505819-23505838 Msa0844870:CDS 30.0%
! ATCTAATTAATCTTGGTGCA+AGG + chr5_4:23505844-23505863 Msa0844870:CDS 30.0%
! TCTAATTAATCTTGGTGCAA+GGG + chr5_4:23505845-23505864 Msa0844870:CDS 30.0%
ATAGACTTTCCTTCTCAAAT+AGG + chr5_4:23506006-23506025 Msa0844870:intron 30.0%
TGGTGTCTTCAAATATGTAA+TGG + chr5_4:23506040-23506059 Msa0844870:intron 30.0%
CTTCAAATATGTAATGGTCA+CGG + chr5_4:23506046-23506065 Msa0844870:intron 30.0%
TTCAAATATGTAATGGTCAC+GGG + chr5_4:23506047-23506066 Msa0844870:intron 30.0%
TCAAATAACACAATCCAAAC+AGG - chr5_4:23506073-23506092 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr5_4:23506166-23506185 None:intergenic 30.0%
GTCATGCTAACATTAAATCA+CGG - chr5_4:23506465-23506484 None:intergenic 30.0%
TATGGAATCCTTAACATGTA+AGG + chr5_4:23506619-23506638 Msa0844870:intron 30.0%
ATGGAATCCTTAACATGTAA+GGG + chr5_4:23506620-23506639 Msa0844870:intron 30.0%
!!! AGTGAGAAAAGTTTTAAAGG+TGG + chr5_4:23506715-23506734 Msa0844870:CDS 30.0%
ACTTAGTTTAAACATGTGAC+CGG - chr5_4:23506759-23506778 None:intergenic 30.0%
TTGAATCAAAACAAAGGTAG+GGG - chr5_4:23507047-23507066 None:intergenic 30.0%
CTTGAATCAAAACAAAGGTA+GGG - chr5_4:23507048-23507067 None:intergenic 30.0%
ACTTGAATCAAAACAAAGGT+AGG - chr5_4:23507049-23507068 None:intergenic 30.0%
ACACACTTGAATCAAAACAA+AGG - chr5_4:23507053-23507072 None:intergenic 30.0%
! TTAAAAAACAACTGGTTTCG+TGG - chr5_4:23507635-23507654 None:intergenic 30.0%
! GAGAAAGGGTATGTTATTGA+AGG - chr5_4:23501914-23501933 None:intergenic 35.0%
TACTCTCTATCCTTTCTTCT+TGG - chr5_4:23501989-23502008 None:intergenic 35.0%
TGGGTTTGTAGTTGTTGTAT+AGG - chr5_4:23502053-23502072 None:intergenic 35.0%
! TGTTGATGAAAGAGTGAGTT+GGG - chr5_4:23502084-23502103 None:intergenic 35.0%
AAGATGAAGAAGAAGGTTGA+GGG - chr5_4:23502216-23502235 None:intergenic 35.0%
AGTTAGAGAATTGCCACTAA+GGG + chr5_4:23502401-23502420 Msa0844870:intron 35.0%
TTGGTCGTTCAGTTTACAAA+GGG + chr5_4:23502430-23502449 Msa0844870:CDS 35.0%
ACATCCAATGAAGTGAATTC+TGG - chr5_4:23502486-23502505 None:intergenic 35.0%
!! TTGTGTGTTTTTGTAGTCAG+GGG + chr5_4:23502612-23502631 Msa0844870:intron 35.0%
! ATAGCTGCTATTTGACAACA+CGG - chr5_4:23502800-23502819 None:intergenic 35.0%
AAATAGCAGCTATTGCTTAG+TGG + chr5_4:23502807-23502826 Msa0844870:intron 35.0%
TGATCCACAATTGACAACAT+TGG + chr5_4:23503040-23503059 Msa0844870:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr5_4:23503181-23503200 Msa0844870:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr5_4:23503185-23503204 None:intergenic 35.0%
! AGCCAAACAAAAAAAAGTGC+AGG - chr5_4:23503186-23503205 None:intergenic 35.0%
TTTAACAGCGGTTTAACAGA+AGG - chr5_4:23503245-23503264 None:intergenic 35.0%
ACCGCTGTTAAAAAAACAGA+CGG + chr5_4:23503253-23503272 Msa0844870:intron 35.0%
!!! TCCGTCTGTTTTTTTAACAG+CGG - chr5_4:23503257-23503276 None:intergenic 35.0%
AACACGATACAAAGAGATAG+GGG + chr5_4:23503420-23503439 Msa0844870:intron 35.0%
ATGCTCAAATCAGAACTCAA+AGG + chr5_4:23503852-23503871 Msa0844870:intron 35.0%
TGCTCAAATCAGAACTCAAA+GGG + chr5_4:23503853-23503872 Msa0844870:intron 35.0%
CAGTTTAACAGAAGGATCAA+TGG + chr5_4:23504103-23504122 Msa0844870:intron 35.0%
CAAGGACTGAAACCAAAAAA+TGG + chr5_4:23504174-23504193 Msa0844870:intron 35.0%
!!! CCTGCATTTACACCATTTTT+TGG - chr5_4:23504189-23504208 None:intergenic 35.0%
CCAAAAAATGGTGTAAATGC+AGG + chr5_4:23504186-23504205 Msa0844870:intron 35.0%
TACCAGCAGCAATTAAGATT+TGG - chr5_4:23504350-23504369 None:intergenic 35.0%
AAGAGAAAGTTTGTGTCACA+GGG - chr5_4:23504395-23504414 None:intergenic 35.0%
AGTTAACTCACAGAAACGTA+CGG + chr5_4:23504727-23504746 Msa0844870:intron 35.0%
!! CTAGGAACTAAGAAGTACTA+TGG - chr5_4:23504979-23504998 None:intergenic 35.0%
TAGAAACATGAACAAACCCA+CGG + chr5_4:23505018-23505037 Msa0844870:intron 35.0%
AGTTTGCAATGAATCCAATG+AGG + chr5_4:23505046-23505065 Msa0844870:intron 35.0%
ATGAATCCAATGAGGCAATA+AGG + chr5_4:23505054-23505073 Msa0844870:intron 35.0%
ACAAAAGAACGAAAGATGGT+GGG - chr5_4:23505147-23505166 None:intergenic 35.0%
ATGCACAAAAGAACGAAAGA+TGG - chr5_4:23505151-23505170 None:intergenic 35.0%
TTGTGACACTATGTATTCTC+TGG + chr5_4:23505187-23505206 Msa0844870:intron 35.0%
! ACTCTCGAGTTTGATAACTT+CGG + chr5_4:23505536-23505555 Msa0844870:intron 35.0%
!! GTTCCGTTTTTGCTTATGTT+TGG + chr5_4:23505628-23505647 Msa0844870:intron 35.0%
! TCATATCAGTTGCTACTTGT+TGG - chr5_4:23505742-23505761 None:intergenic 35.0%
AGTTGTCTTTACTTGAACAC+AGG + chr5_4:23505791-23505810 Msa0844870:intron 35.0%
AACTACCTTCTACCCATAAA+AGG - chr5_4:23505894-23505913 None:intergenic 35.0%
ACTTTCCTTCTCAAATAGGA+AGG + chr5_4:23506010-23506029 Msa0844870:intron 35.0%
CTTTCCTTCTCAAATAGGAA+GGG + chr5_4:23506011-23506030 Msa0844870:intron 35.0%
AAATCCCTTCCTATTTGAGA+AGG - chr5_4:23506018-23506037 None:intergenic 35.0%
TTCTCAAATAGGAAGGGATT+TGG + chr5_4:23506017-23506036 Msa0844870:intron 35.0%
! GAAAACAGCTTATGGTCTTA+TGG - chr5_4:23506158-23506177 None:intergenic 35.0%
ATTAGGCTGTTTATCCAAAC+AGG + chr5_4:23506324-23506343 Msa0844870:intron 35.0%
TTAGGCTGTTTATCCAAACA+GGG + chr5_4:23506325-23506344 Msa0844870:intron 35.0%
GCGTATGAATCTGCATATAT+GGG - chr5_4:23506351-23506370 None:intergenic 35.0%
TGCGTATGAATCTGCATATA+TGG - chr5_4:23506352-23506371 None:intergenic 35.0%
AATATGTACTTCCCTTCCAT+CGG + chr5_4:23506806-23506825 Msa0844870:intron 35.0%
TTAACAATTTCCCGATGGAA+GGG - chr5_4:23506820-23506839 None:intergenic 35.0%
ATTAACAATTTCCCGATGGA+AGG - chr5_4:23506821-23506840 None:intergenic 35.0%
ATTTATCCCTGTCACAAAAG+CGG + chr5_4:23506955-23506974 Msa0844870:CDS 35.0%
TGAATCAAAACAAAGGTAGG+GGG - chr5_4:23507046-23507065 None:intergenic 35.0%
! TATGCCATTTGCATAAGAAG+TGG + chr5_4:23507295-23507314 Msa0844870:intron 35.0%
! ATGCCATTTGCATAAGAAGT+GGG + chr5_4:23507296-23507315 Msa0844870:intron 35.0%
GTAATCATTGTATTCAGCTC+TGG + chr5_4:23507688-23507707 Msa0844870:intron 35.0%
AGCAAAAAACATGTTGTCGA+GGG - chr5_4:23507755-23507774 None:intergenic 35.0%
AAGCAAAAAACATGTTGTCG+AGG - chr5_4:23507756-23507775 None:intergenic 35.0%
CGGTTTGCAATATTTACTTC+TGG - chr5_4:23507901-23507920 None:intergenic 35.0%
AGTCTTCTTCTCTTCTTCTT+CGG - chr5_4:23507921-23507940 None:intergenic 35.0%
GAAGAGAAGAAGACTTTGAA+TGG + chr5_4:23507926-23507945 Msa0844870:CDS 35.0%
AGACTTTGAATGGAACAGAT+AGG + chr5_4:23507936-23507955 Msa0844870:CDS 35.0%
GACTTTGAATGGAACAGATA+GGG + chr5_4:23507937-23507956 Msa0844870:CDS 35.0%
GTAGTTGTTGTATAGGACTG+TGG - chr5_4:23502046-23502065 None:intergenic 40.0%
! AGTGAGTTGGGACTGAAAAT+GGG - chr5_4:23502072-23502091 None:intergenic 40.0%
! GTGTTGATGAAAGAGTGAGT+TGG - chr5_4:23502085-23502104 None:intergenic 40.0%
ATCCATTTCTTTACCTCGTG+TGG + chr5_4:23502114-23502133 Msa0844870:CDS 40.0%
TCCATTTCTTTACCTCGTGT+GGG + chr5_4:23502115-23502134 Msa0844870:CDS 40.0%
GAAGATGAAGAAGAAGGTTG+AGG - chr5_4:23502217-23502236 None:intergenic 40.0%
GAAGAGGAAGATGAAGAAGA+AGG - chr5_4:23502223-23502242 None:intergenic 40.0%
TCTTCTTCATCTTCCTCTTC+AGG + chr5_4:23502223-23502242 Msa0844870:CDS 40.0%
CAGTTAGAGAATTGCCACTA+AGG + chr5_4:23502400-23502419 Msa0844870:intron 40.0%
GTTGGTCGTTCAGTTTACAA+AGG + chr5_4:23502429-23502448 Msa0844870:CDS 40.0%
ACCTCCAGAATTCACTTCAT+TGG + chr5_4:23502479-23502498 Msa0844870:CDS 40.0%
TCCAATGAAGTGAATTCTGG+AGG - chr5_4:23502483-23502502 None:intergenic 40.0%
CCAATCATATTGGCGAAAAC+CGG - chr5_4:23502689-23502708 None:intergenic 40.0%
GCTTTCTGCTCCAATCATAT+TGG - chr5_4:23502699-23502718 None:intergenic 40.0%
ATATGATTGGAGCAGAAAGC+AGG + chr5_4:23502699-23502718 Msa0844870:CDS 40.0%
AGTACAACGTTGTCAAGTAG+CGG + chr5_4:23502956-23502975 Msa0844870:intron 40.0%
CATTGTAGTGCAGTGGAATT+TGG + chr5_4:23502996-23503015 Msa0844870:intron 40.0%
CAGGGACTGAAACCAAAAAA+TGG - chr5_4:23503167-23503186 None:intergenic 40.0%
!!! TTTGTTTTTAGTGTGCCACG+TGG - chr5_4:23503306-23503325 None:intergenic 40.0%
ACACGATACAAAGAGATAGG+GGG + chr5_4:23503421-23503440 Msa0844870:intron 40.0%
ACGAGAAGGGAATTGCAAAA+TGG - chr5_4:23503490-23503509 None:intergenic 40.0%
TATCACACCAGAAACGAGAA+GGG - chr5_4:23503503-23503522 None:intergenic 40.0%
ATATCACACCAGAAACGAGA+AGG - chr5_4:23503504-23503523 None:intergenic 40.0%
! AAGCCAAATCTGATTCGCTT+TGG - chr5_4:23503637-23503656 None:intergenic 40.0%
TAGTGAATACCTCTGTTCCA+TGG + chr5_4:23503734-23503753 Msa0844870:intron 40.0%
GCTTGAAAATATCAGAGCCA+TGG - chr5_4:23503754-23503773 None:intergenic 40.0%
!! GGCTCTGATATTTTCAAGCT+TGG + chr5_4:23503755-23503774 Msa0844870:intron 40.0%
AGGACTGCATATCAATTCTC+AGG - chr5_4:23503823-23503842 None:intergenic 40.0%
AAATCAGAACTCAAAGGGAG+TGG + chr5_4:23503858-23503877 Msa0844870:intron 40.0%
AGTGAACTTAGAGTAGAGAG+AGG + chr5_4:23503892-23503911 Msa0844870:intron 40.0%
TTGAATTTGAGTGCGACCAT+TGG + chr5_4:23503917-23503936 Msa0844870:intron 40.0%
GTAACTGTGTTCATCAGCAA+TGG - chr5_4:23503975-23503994 None:intergenic 40.0%
GACCAAATCTTAATTGCTGC+TGG + chr5_4:23504345-23504364 Msa0844870:intron 40.0%
GTGTCACAGGGGAAAATTTA+AGG - chr5_4:23504383-23504402 None:intergenic 40.0%
AGAGAAAGTTTGTGTCACAG+GGG - chr5_4:23504394-23504413 None:intergenic 40.0%
GAAGAGAAAGTTTGTGTCAC+AGG - chr5_4:23504396-23504415 None:intergenic 40.0%
TAGGGTGAAAAATACACAGC+TGG - chr5_4:23504555-23504574 None:intergenic 40.0%
GTTAACTCACAGAAACGTAC+GGG + chr5_4:23504728-23504747 Msa0844870:intron 40.0%
! CGATGATATTTTGTGCACTG+TGG - chr5_4:23504882-23504901 None:intergenic 40.0%
TGTTCACTTCCTTTGCAGAT+GGG - chr5_4:23504953-23504972 None:intergenic 40.0%
TTGTTCACTTCCTTTGCAGA+TGG - chr5_4:23504954-23504973 None:intergenic 40.0%
CATTCACCTTATTGCCTCAT+TGG - chr5_4:23505063-23505082 None:intergenic 40.0%
CACAAAAGAACGAAAGATGG+TGG - chr5_4:23505148-23505167 None:intergenic 40.0%
ATAACTTCGGACCTAACTCA+AGG + chr5_4:23505549-23505568 Msa0844870:intron 40.0%
TAACTTCGGACCTAACTCAA+GGG + chr5_4:23505550-23505569 Msa0844870:intron 40.0%
TCAAATAGGAAGGGATTTGG+TGG + chr5_4:23506020-23506039 Msa0844870:intron 40.0%
ACATGTGCCCTTACATGTTA+AGG - chr5_4:23506630-23506649 None:intergenic 40.0%
!! GACTTGTTATGCAGTGATGA+AGG + chr5_4:23506689-23506708 Msa0844870:intron 40.0%
ATATGTACTTCCCTTCCATC+GGG + chr5_4:23506807-23506826 Msa0844870:intron 40.0%
GAAGTTATATTAGTGCAGGG+TGG - chr5_4:23506867-23506886 None:intergenic 40.0%
! AGCTGGCCTCTAAATAAGTA+AGG - chr5_4:23507114-23507133 None:intergenic 40.0%
! ACAATAAAATTGGCTTCGCC+CGG + chr5_4:23507477-23507496 Msa0844870:intron 40.0%
! ACAATAAAATTGGCTTCGCC+CGG + chr5_4:23507477-23507496 Msa0844870:intron 40.0%
TTTATCATGCCATGCCTCTT+AGG + chr5_4:23507847-23507866 Msa0844870:CDS 40.0%
GTTGTTGTATAGGACTGTGG+TGG - chr5_4:23502043-23502062 None:intergenic 45.0%
! GAGTGAGTTGGGACTGAAAA+TGG - chr5_4:23502073-23502092 None:intergenic 45.0%
ACCCACACGAGGTAAAGAAA+TGG - chr5_4:23502119-23502138 None:intergenic 45.0%
TTGCCACTAAGGGTTTACGT+TGG + chr5_4:23502411-23502430 Msa0844870:CDS 45.0%
! GAAGTGAATTCTGGAGGTAC+AGG - chr5_4:23502477-23502496 None:intergenic 45.0%
! CCGGTTTTCGCCAATATGAT+TGG + chr5_4:23502686-23502705 Msa0844870:CDS 45.0%
GCTATAGCATTGTAGTGCAG+TGG + chr5_4:23502989-23503008 Msa0844870:intron 45.0%
GATACAAAGAGATAGGGGGT+GGG + chr5_4:23503425-23503444 Msa0844870:intron 45.0%
! AGGGGGTGGGAATGAATTTT+AGG + chr5_4:23503438-23503457 Msa0844870:intron 45.0%
! GGGGGTGGGAATGAATTTTA+GGG + chr5_4:23503439-23503458 Msa0844870:intron 45.0%
TGCAATTCCCTTCTCGTTTC+TGG + chr5_4:23503493-23503512 Msa0844870:intron 45.0%
CTGCCAAAGCGAATCAGATT+TGG + chr5_4:23503631-23503650 Msa0844870:intron 45.0%
GCTTCGAGGTTCTCAATTTG+AGG + chr5_4:23503653-23503672 Msa0844870:intron 45.0%
ATATCAGAGCCATGGAACAG+AGG - chr5_4:23503746-23503765 None:intergenic 45.0%
! TTCATGGACTGCTGAGGAAA+AGG + chr5_4:23503949-23503968 Msa0844870:intron 45.0%
! ACCGAGGATCTTAGTTCTTG+TGG + chr5_4:23503993-23504012 Msa0844870:intron 45.0%
CCCACAAGAACTAAGATCCT+CGG - chr5_4:23503997-23504016 None:intergenic 45.0%
! CCGAGGATCTTAGTTCTTGT+GGG + chr5_4:23503994-23504013 Msa0844870:intron 45.0%
! CGAGGATCTTAGTTCTTGTG+GGG + chr5_4:23503995-23504014 Msa0844870:intron 45.0%
CATTAAGCACCCATCTGCAA+AGG + chr5_4:23504941-23504960 Msa0844870:intron 45.0%
CTTAGTTCCTAGCACAAACG+AGG + chr5_4:23504987-23505006 Msa0844870:intron 45.0%
CATTGCAAACTTGCAACCGT+GGG - chr5_4:23505037-23505056 None:intergenic 45.0%
TCATTGCAAACTTGCAACCG+TGG - chr5_4:23505038-23505057 None:intergenic 45.0%
AACCTAACTCAAGGGAGTTG+AGG + chr5_4:23505462-23505481 Msa0844870:intron 45.0%
!! CAAACTCCGCTTTTGTGACA+GGG - chr5_4:23506964-23506983 None:intergenic 45.0%
CCTCCCACTTCTTATGCAAA+TGG - chr5_4:23507302-23507321 None:intergenic 45.0%
CCATTTGCATAAGAAGTGGG+AGG + chr5_4:23507299-23507318 Msa0844870:intron 45.0%
GAAGTGGGAGGAAATCTTCA+AGG + chr5_4:23507311-23507330 Msa0844870:intron 45.0%
TCTAACACACTGAAGGTCTC+CGG - chr5_4:23507591-23507610 None:intergenic 45.0%
ACGTCAGTCTAACACACTGA+AGG - chr5_4:23507598-23507617 None:intergenic 45.0%
! AACTGGTTTCGTGGTGTAGT+TGG - chr5_4:23507626-23507645 None:intergenic 45.0%
!! CAAAGGCATTCCAACCTAAG+AGG - chr5_4:23507864-23507883 None:intergenic 45.0%
!! TGGCTTTATGGAGTCAGCAA+AGG - chr5_4:23507881-23507900 None:intergenic 45.0%
!!! TTATAATATATATATTTTCT+AGG + chr5_4:23503110-23503129 Msa0844870:intron 5.0%
!! TAAAAATAAAAAATAAAGAA+AGG + chr5_4:23503380-23503399 Msa0844870:intron 5.0%
!! AAAAATAAAAAATAAAGAAA+GGG + chr5_4:23503381-23503400 Msa0844870:intron 5.0%
!!! AAATTTTGTAAAATTATAAA+GGG - chr5_4:23506661-23506680 None:intergenic 5.0%
!! AAAAATTAAAACAATAAAAT+TGG + chr5_4:23507467-23507486 Msa0844870:intron 5.0%
!! AAAAATTAAAACAATAAAAT+TGG + chr5_4:23507467-23507486 Msa0844870:intron 5.0%
!! GGTTTGGGTTGGAAAAGCTC+AGG - chr5_4:23502175-23502194 None:intergenic 50.0%
TGAGGTGGAGGGAATGGTTT+GGG - chr5_4:23502190-23502209 None:intergenic 50.0%
TTGAGGTGGAGGGAATGGTT+TGG - chr5_4:23502191-23502210 None:intergenic 50.0%
CGACCAACGTAAACCCTTAG+TGG - chr5_4:23502417-23502436 None:intergenic 50.0%
CAAAGGGAAAGCTGTGCTCA+CGG + chr5_4:23502446-23502465 Msa0844870:CDS 50.0%
! CTACAGTTTGCTCCTTCTGC+CGG + chr5_4:23502667-23502686 Msa0844870:CDS 50.0%
TATTGGCGAAAACCGGCAGA+AGG - chr5_4:23502682-23502701 None:intergenic 50.0%
CGATACAAAGAGATAGGGGG+TGG + chr5_4:23503424-23503443 Msa0844870:intron 50.0%
TGATTCGCTTTGGCAGAACG+AGG - chr5_4:23503627-23503646 None:intergenic 50.0%
! GCGAATCAGATTTGGCTTCG+AGG + chr5_4:23503639-23503658 Msa0844870:intron 50.0%
GCTGATGAACACAGTTACCG+AGG + chr5_4:23503977-23503996 Msa0844870:intron 50.0%
CACAGAAACGTACGGGTTTG+AGG + chr5_4:23504735-23504754 Msa0844870:intron 50.0%
TCCTAGCACAAACGAGGTCA+TGG + chr5_4:23504993-23505012 Msa0844870:intron 50.0%
TCCATGACCTCGTTTGTGCT+AGG - chr5_4:23504997-23505016 None:intergenic 50.0%
GGTTTCAGCTAGTCAGAGCT+AGG - chr5_4:23505088-23505107 None:intergenic 50.0%
! TTGGAGCACTTGGAAGAGCT+AGG - chr5_4:23505109-23505128 None:intergenic 50.0%
TCTTCCAAGTGCTCCAACGA+GGG + chr5_4:23505112-23505131 Msa0844870:intron 50.0%
GTCCTCAACTCCCTTGAGTT+AGG - chr5_4:23505467-23505486 None:intergenic 50.0%
AACTCAAGGGAGTTGAGGAC+AGG + chr5_4:23505467-23505486 Msa0844870:intron 50.0%
ACTCAAGGGAGTTGAGGACA+GGG + chr5_4:23505468-23505487 Msa0844870:intron 50.0%
GACCTAACTCAAGGGAGTTG+AGG + chr5_4:23505558-23505577 Msa0844870:intron 50.0%
GTCCTCAACTCCCTTGAGTT+AGG - chr5_4:23505467-23505486 None:intergenic 50.0%
AACTCAAGGGAGTTGAGGAC+AGG + chr5_4:23505467-23505486 Msa0844870:intron 50.0%
ACTCAAGGGAGTTGAGGACA+GGG + chr5_4:23505468-23505487 Msa0844870:intron 50.0%
CTTGTGAGACTGCTTGAGAG+AGG + chr5_4:23506108-23506127 Msa0844870:intron 50.0%
AGACTGCTTGAGAGAGGTCA+TGG + chr5_4:23506114-23506133 Msa0844870:intron 50.0%
CTGCATATATGGGCCCTGTT+TGG - chr5_4:23506341-23506360 None:intergenic 50.0%
!! GCAAACTCCGCTTTTGTGAC+AGG - chr5_4:23506965-23506984 None:intergenic 50.0%
TCTCTCTCTCTCTCTACCCT+TGG + chr5_4:23507017-23507036 Msa0844870:intron 50.0%
CAAAGCCAATCTTCCGCGAA+TGG + chr5_4:23507728-23507747 Msa0844870:intron 50.0%
TCATGCCATGCCTCTTAGGT+TGG + chr5_4:23507851-23507870 Msa0844870:CDS 50.0%
GCATTCCAACCTAAGAGGCA+TGG - chr5_4:23507859-23507878 None:intergenic 50.0%
GTGAGGTTGGGGGAGAAAGT+GGG - chr5_4:23502142-23502161 None:intergenic 55.0%
! TGGGTTGGAAAAGCTCAGGC+TGG - chr5_4:23502171-23502190 None:intergenic 55.0%
! GTGGAGGGAATGGTTTGGGT+TGG - chr5_4:23502186-23502205 None:intergenic 55.0%
!! GAAGAAGGTTGAGGGCGTTG+AGG - chr5_4:23502208-23502227 None:intergenic 55.0%
! AAAACAGACGGAGTGCCACG+TGG + chr5_4:23503265-23503284 Msa0844870:intron 55.0%
CGTGCAATAACTGGTCCACG+TGG - chr5_4:23503283-23503302 None:intergenic 55.0%
ACCAGTTATTGCACGCCACG+TGG + chr5_4:23503288-23503307 Msa0844870:intron 55.0%
TTCGCTTTGGCAGAACGAGG+TGG - chr5_4:23503624-23503643 None:intergenic 55.0%
CCATGAACGACTCGCACCAA+TGG - chr5_4:23503936-23503955 None:intergenic 55.0%
CCATTGGTGCGAGTCGTTCA+TGG + chr5_4:23503933-23503952 Msa0844870:intron 55.0%
! GAGTCGTTCATGGACTGCTG+AGG + chr5_4:23503943-23503962 Msa0844870:intron 55.0%
CTCTTCCAAGTGCTCCAACG+AGG + chr5_4:23505111-23505130 Msa0844870:intron 55.0%
CTTCCAAGTGCTCCAACGAG+GGG + chr5_4:23505113-23505132 Msa0844870:intron 55.0%
GTAATGGTCACGGGCCTGTT+TGG + chr5_4:23506056-23506075 Msa0844870:intron 55.0%
AAGGTGGAGCCACTTCACGA+CGG + chr5_4:23506731-23506750 Msa0844870:CDS 55.0%
CAAAGGTAGGGGGTGACCAA+GGG - chr5_4:23507036-23507055 None:intergenic 55.0%
ACAAAGGTAGGGGGTGACCA+AGG - chr5_4:23507037-23507056 None:intergenic 55.0%
TATGGCCACAGTTCGAGTCC+GGG - chr5_4:23507498-23507517 None:intergenic 55.0%
GTATGGCCACAGTTCGAGTC+CGG - chr5_4:23507499-23507518 None:intergenic 55.0%
AGGGACCATTCGCGGAAGAT+TGG - chr5_4:23507736-23507755 None:intergenic 55.0%
TGTTGTCGAGGGACCATTCG+CGG - chr5_4:23507744-23507763 None:intergenic 55.0%
GAGAAAGTGGGACCCACACG+AGG - chr5_4:23502130-23502149 None:intergenic 60.0%
GGTGAGGTTGGGGGAGAAAG+TGG - chr5_4:23502143-23502162 None:intergenic 60.0%
GAAAAGCTCAGGCTGGCGAC+AGG - chr5_4:23502164-23502183 None:intergenic 60.0%
!! GTTGAGGGCGTTGAGGTGGA+GGG - chr5_4:23502201-23502220 None:intergenic 60.0%
!! GAAGGTTGAGGGCGTTGAGG+TGG - chr5_4:23502205-23502224 None:intergenic 60.0%
GCCACGTGGCGTGCAATAAC+TGG - chr5_4:23503292-23503311 None:intergenic 60.0%
GCTTTGGCAGAACGAGGTGG+AGG - chr5_4:23503621-23503640 None:intergenic 60.0%
! GTTCCCCTCGTTGGAGCACT+TGG - chr5_4:23505119-23505138 None:intergenic 60.0%
TGGGACTGAGTTCCCCTCGT+TGG - chr5_4:23505128-23505147 None:intergenic 60.0%
GAGCCACTTCACGACGGTTC+CGG + chr5_4:23506737-23506756 Msa0844870:CDS 60.0%
TGACCGGAACCGTCGTGAAG+TGG - chr5_4:23506743-23506762 None:intergenic 60.0%
! AAGGTCTCCGGTTCGAGTCC+GGG - chr5_4:23507579-23507598 None:intergenic 60.0%
! GAAGGTCTCCGGTTCGAGTC+CGG - chr5_4:23507580-23507599 None:intergenic 60.0%
CTGGCGACAGGTGAGGTTGG+GGG - chr5_4:23502152-23502171 None:intergenic 65.0%
GCTGGCGACAGGTGAGGTTG+GGG - chr5_4:23502153-23502172 None:intergenic 65.0%
GGCTGGCGACAGGTGAGGTT+GGG - chr5_4:23502154-23502173 None:intergenic 65.0%
AGGCTGGCGACAGGTGAGGT+TGG - chr5_4:23502155-23502174 None:intergenic 65.0%
!! GGGCGTTGAGGTGGAGGGAA+TGG - chr5_4:23502196-23502215 None:intergenic 65.0%
!! GGTTGAGGGCGTTGAGGTGG+AGG - chr5_4:23502202-23502221 None:intergenic 65.0%
CTTCGCCCGGACTCGAACTG+TGG + chr5_4:23507490-23507509 Msa0844870:intron 65.0%
GCTCAGGCTGGCGACAGGTG+AGG - chr5_4:23502159-23502178 None:intergenic 70.0%
GGCTTCGCCCGGACTCGAAC+CGG + chr5_4:23507488-23507507 Msa0844870:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 23501887 23508179 23501887 ID=Msa0844870;Name=Msa0844870
chr5_4 mRNA 23501887 23508179 23501887 ID=Msa0844870-mRNA-1;Parent=Msa0844870;Name=Msa0844870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=132|1|1|1|1|1|7|222|262
chr5_4 exon 23501887 23502244 23501887 ID=Msa0844870-mRNA-1:exon:9594;Parent=Msa0844870-mRNA-1
chr5_4 exon 23502403 23502503 23502403 ID=Msa0844870-mRNA-1:exon:9595;Parent=Msa0844870-mRNA-1
chr5_4 exon 23502628 23502720 23502628 ID=Msa0844870-mRNA-1:exon:9596;Parent=Msa0844870-mRNA-1
chr5_4 exon 23505813 23505907 23505813 ID=Msa0844870-mRNA-1:exon:9597;Parent=Msa0844870-mRNA-1
chr5_4 exon 23506703 23506776 23506703 ID=Msa0844870-mRNA-1:exon:9598;Parent=Msa0844870-mRNA-1
chr5_4 exon 23506918 23507006 23506918 ID=Msa0844870-mRNA-1:exon:9599;Parent=Msa0844870-mRNA-1
chr5_4 exon 23507847 23508179 23507847 ID=Msa0844870-mRNA-1:exon:9600;Parent=Msa0844870-mRNA-1
chr5_4 five_prime_UTR 23501887 23502018 23501887 ID=Msa0844870-mRNA-1:five_prime_utr;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23502019 23502244 23502019 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23502403 23502503 23502403 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23502628 23502720 23502628 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23505813 23505907 23505813 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23506703 23506776 23506703 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23506918 23507006 23506918 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 CDS 23507847 23507957 23507847 ID=Msa0844870-mRNA-1:cds;Parent=Msa0844870-mRNA-1
chr5_4 three_prime_UTR 23507958 23508179 23507958 ID=Msa0844870-mRNA-1:three_prime_utr;Parent=Msa0844870-mRNA-1
Gene Sequence

>Msa0844870

ATGAAGATGTTGCAATTGCAACCACCACAGTCCTATACAACAACTACAAACCCATTTTCAGTCCCAACTCACTCTTTCATCAACACTCCCAAAAAATCCATTTCTTTACCTCGTGTGGGTCCCACTTTCTCCCCCAACCTCACCTGTCGCCAGCCTGAGCTTTTCCAACCCAAACCATTCCCTCCACCTCAACGCCCTCAACCTTCTTCTTCATCTTCCTCTTCAGTTAGAGAATTGCCACTAAGGGTTTACGTTGGTCGTTCAGTTTACAAAGGGAAAGCTGTGCTCACGGTGTCTCCTGTACCTCCAGAATTCACTTCATTGGATTCAGGGGCATTCAAGATATCTAAAGAAGGTTTGATGTTGCTACAGTTTGCTCCTTCTGCCGGTTTTCGCCAATATGATTGGAGCAGAAAGCAGGTATTTAAACTATCTGTGGATGAAATGGGAAATCTAATTAATCTTGGTGCAAGGGAGTCTTGTGAATTTTTTCACGATCCTTTTATGGGTAGAAGTGATGAAGGTAAAGTGAGAAAAGTTTTAAAGGTGGAGCCACTTCACGACGGTTCCGGTCACATGTTTAAACTAAGTGTTCAAAACAAGCTCAAGAACATCGATGAGAACATATTTATCCCTGTCACAAAAGCGGAGTTTGCAGTTTTCAATTCACTTTTCAATTTTATCATGCCATGCCTCTTAGGTTGGAATGCCTTTGCTGACTCCATAAAGCCAGAAGTAAATATTGCAAACCGAAGAAGAAGAGAAGAAGACTTTGAATGGAACAGATAG

Protein sequence

>Msa0844870

MKMLQLQPPQSYTTTTNPFSVPTHSFINTPKKSISLPRVGPTFSPNLTCRQPELFQPKPFPPPQRPQPSSSSSSSVRELPLRVYVGRSVYKGKAVLTVSPVPPEFTSLDSGAFKISKEGLMLLQFAPSAGFRQYDWSRKQVFKLSVDEMGNLINLGARESCEFFHDPFMGRSDEGKVRKVLKVEPLHDGSGHMFKLSVQNKLKNIDENIFIPVTKAEFAVFNSLFNFIMPCLLGWNAFADSIKPEVNIANRRRREEDFEWNR*