Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930700 | XP_003630980.1 | 99.197 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 4.21e-175 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930700 | sp|Q9ZUA5|VIT1_ARATH | 83.122 | 237 | 40 | 0 | 9 | 245 | 10 | 246 | 4.05e-143 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001880 | Msa0930700 | 0.982641 | 1.284742e-155 | -8.615850e-47 |
| Msa0018610 | Msa0930700 | 0.809438 | 1.891704e-50 | -8.615850e-47 |
| Msa0028410 | Msa0930700 | 0.835884 | 1.293896e-56 | -8.615850e-47 |
| Msa0046800 | Msa0930700 | 0.816860 | 4.447004e-52 | -8.615850e-47 |
| Msa0078170 | Msa0930700 | 0.800319 | 1.523768e-48 | -8.615850e-47 |
| Msa0080620 | Msa0930700 | 0.807891 | 4.049659e-50 | -8.615850e-47 |
| Msa0102290 | Msa0930700 | 0.805308 | 1.421569e-49 | -8.615850e-47 |
| Msa0612950 | Msa0930700 | 0.804240 | 2.374912e-49 | -8.615850e-47 |
| Msa0619030 | Msa0930700 | 0.800677 | 1.288216e-48 | -8.615850e-47 |
| Msa0619450 | Msa0930700 | 0.819381 | 1.196496e-52 | -8.615850e-47 |
| Msa0619530 | Msa0930700 | 0.808445 | 3.085809e-50 | -8.615850e-47 |
| Msa0620050 | Msa0930700 | 0.809176 | 2.153396e-50 | -8.615850e-47 |
| Msa0633070 | Msa0930700 | -0.832316 | 1.013649e-55 | -8.615850e-47 |
| Msa0639040 | Msa0930700 | 0.800156 | 1.645108e-48 | -8.615850e-47 |
| Msa0659580 | Msa0930700 | 0.820356 | 7.162232e-53 | -8.615850e-47 |
| Msa0677160 | Msa0930700 | 0.803973 | 2.699376e-49 | -8.615850e-47 |
| Msa0679270 | Msa0930700 | 0.828157 | 1.051014e-54 | -8.615850e-47 |
| Msa0681190 | Msa0930700 | 0.809168 | 2.162149e-50 | -8.615850e-47 |
| Msa0724120 | Msa0930700 | 0.809517 | 1.820049e-50 | -8.615850e-47 |
| Msa0752950 | Msa0930700 | 0.804764 | 1.846998e-49 | -8.615850e-47 |
| Msa0770050 | Msa0930700 | 0.822518 | 2.269282e-53 | -8.615850e-47 |
| Msa0799150 | Msa0930700 | 0.819323 | 1.233669e-52 | -8.615850e-47 |
| Msa0808500 | Msa0930700 | 0.800131 | 1.664216e-48 | -8.615850e-47 |
| Msa0124070 | Msa0930700 | 0.825072 | 5.722855e-54 | -8.615850e-47 |
| Msa0131230 | Msa0930700 | 0.817137 | 3.854252e-52 | -8.615850e-47 |
| Msa0134120 | Msa0930700 | 0.800329 | 1.516448e-48 | -8.615850e-47 |
| Msa0147070 | Msa0930700 | 0.800176 | 1.629340e-48 | -8.615850e-47 |
| Msa0162170 | Msa0930700 | 0.802503 | 5.438922e-49 | -8.615850e-47 |
| Msa0164310 | Msa0930700 | 0.813013 | 3.172827e-51 | -8.615850e-47 |
| Msa0168470 | Msa0930700 | 0.820005 | 8.620612e-53 | -8.615850e-47 |
| Msa0175240 | Msa0930700 | 0.806107 | 9.660415e-50 | -8.615850e-47 |
| Msa0429550 | Msa0930700 | 0.816794 | 4.601188e-52 | -8.615850e-47 |
| Msa0469770 | Msa0930700 | 0.801766 | 7.711100e-49 | -8.615850e-47 |
| Msa0469840 | Msa0930700 | 0.802515 | 5.408050e-49 | -8.615850e-47 |
| Msa0474290 | Msa0930700 | 0.803533 | 3.331299e-49 | -8.615850e-47 |
| Msa0261020 | Msa0930700 | 0.811959 | 5.394257e-51 | -8.615850e-47 |
| Msa0284980 | Msa0930700 | 0.804052 | 2.599680e-49 | -8.615850e-47 |
| Msa0355990 | Msa0930700 | 0.857680 | 1.383859e-62 | -8.615850e-47 |
| Msa0504310 | Msa0930700 | 0.835669 | 1.467109e-56 | -8.615850e-47 |
| Msa0518720 | Msa0930700 | 0.807235 | 5.581585e-50 | -8.615850e-47 |
| Msa0544780 | Msa0930700 | 0.820113 | 8.141781e-53 | -8.615850e-47 |
| Msa0552920 | Msa0930700 | 0.802350 | 5.850147e-49 | -8.615850e-47 |
| Msa0560380 | Msa0930700 | 0.801102 | 1.055124e-48 | -8.615850e-47 |
| Msa0576760 | Msa0930700 | 0.896663 | 2.970576e-76 | -8.615850e-47 |
| Msa0584250 | Msa0930700 | 0.805036 | 1.620355e-49 | -8.615850e-47 |
| Msa0597800 | Msa0930700 | -0.816858 | 4.451761e-52 | -8.615850e-47 |
| Msa0597820 | Msa0930700 | -0.801925 | 7.154467e-49 | -8.615850e-47 |
| Msa0855260 | Msa0930700 | -0.809081 | 2.256440e-50 | -8.615850e-47 |
| Msa0930700 | Msa1076070 | 0.819626 | 1.052393e-52 | -8.615850e-47 |
| Msa0930700 | Msa1076120 | 0.824808 | 6.602968e-54 | -8.615850e-47 |
| Msa0930700 | Msa1076530 | 0.803083 | 4.129247e-49 | -8.615850e-47 |
| Msa0930700 | Msa1083660 | 0.823414 | 1.403061e-53 | -8.615850e-47 |
| Msa0930700 | Msa1102410 | 0.803075 | 4.145269e-49 | -8.615850e-47 |
| Msa0930700 | Msa1144470 | 0.802429 | 5.633912e-49 | -8.615850e-47 |
| Msa0930700 | Msa1148100 | 0.804175 | 2.449992e-49 | -8.615850e-47 |
| Msa0930700 | Msa1163130 | 0.807919 | 3.995077e-50 | -8.615850e-47 |
| Msa0930700 | Msa1163230 | 0.826340 | 2.862930e-54 | -8.615850e-47 |
| Msa0930700 | Msa1191270 | -0.800599 | 1.336047e-48 | -8.615850e-47 |
| Msa0930700 | Msa1225280 | 0.806437 | 8.230527e-50 | -8.615850e-47 |
| Msa0930700 | Msa1240240 | 0.801901 | 7.234242e-49 | -8.615850e-47 |
| Msa0930700 | Msa1244940 | 0.801249 | 9.842639e-49 | -8.615850e-47 |
| Msa0930700 | Msa1250490 | 0.800516 | 1.389501e-48 | -8.615850e-47 |
| Msa0930700 | Msa1292700 | 0.821601 | 3.701526e-53 | -8.615850e-47 |
| Msa0930700 | Msa1297550 | 0.812308 | 4.525555e-51 | -8.615850e-47 |
| Msa0930700 | Msa1303040 | 0.807338 | 5.308480e-50 | -8.615850e-47 |
| Msa0930700 | Msa1325260 | 0.800788 | 1.222576e-48 | -8.615850e-47 |
| Msa0930700 | Msa1350130 | 0.808086 | 3.680245e-50 | -8.615850e-47 |
| Msa0930700 | Msa1358790 | 0.804521 | 2.075843e-49 | -8.615850e-47 |
| Msa0930700 | Msa1381300 | 0.817084 | 3.961225e-52 | -8.615850e-47 |
| Msa0930700 | Msa1398150 | 0.801256 | 9.808682e-49 | -8.615850e-47 |
| Msa0930700 | Msa1414280 | 0.806005 | 1.014747e-49 | -8.615850e-47 |
| Msa0930700 | Msa1427260 | 0.821163 | 4.671494e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930700 | MtrunA17_Chr8g0392011 | 99.197 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 3.87e-179 | 491 |
| Msa0930700 | MtrunA17_Chr8g0392031 | 85.526 | 152 | 21 | 1 | 1 | 151 | 1 | 152 | 1.89e-90 | 263 |
| Msa0930700 | MtrunA17_Chr8g0392021 | 88.506 | 87 | 10 | 0 | 163 | 249 | 2 | 88 | 4.50e-48 | 154 |
| Msa0930700 | MtrunA17_Chr7g0246831 | 26.613 | 248 | 175 | 3 | 1 | 241 | 3 | 250 | 2.28e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930700 | AT2G01770.1 | 83.122 | 237 | 40 | 0 | 9 | 245 | 10 | 246 | 4.11e-144 | 403 |
Find 98 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCTCTGCAGCTGCTTA+TGG | 0.219518 | 6_2:+79770609 | Msa0930700:CDS |
| GCACTATACAATGCTCTTCT+TGG | 0.231503 | 6_2:-79770387 | None:intergenic |
| TTGATTGCTTTGCTTATCTT+TGG | 0.233804 | 6_2:+79770516 | Msa0930700:CDS |
| TTACGATACGAACCAGTTTC+TGG | 0.248340 | 6_2:-79768859 | None:intergenic |
| ATTTCAAGCCAAAAGTTAAA+TGG | 0.274829 | 6_2:-79770761 | None:intergenic |
| TTCATGAACCATTTAACTTT+TGG | 0.275424 | 6_2:+79770753 | Msa0930700:three_prime_UTR |
| ATTGCTATTGCTTACGTATT+GGG | 0.289589 | 6_2:+79770417 | Msa0930700:CDS |
| CCATTTGAAGAGGTGTTAAA+TGG | 0.291388 | 6_2:+79770880 | Msa0930700:three_prime_UTR |
| GCTTTGGAAACTGCTCTAAT+TGG | 0.299231 | 6_2:+79770582 | Msa0930700:CDS |
| CTCTGCAGCTGCTTATGGTT+TGG | 0.327872 | 6_2:+79770614 | Msa0930700:CDS |
| GTTACACATTAGGCTTTGTT+TGG | 0.346431 | 6_2:+79768359 | Msa0930700:five_prime_UTR |
| TCACCGGCAACAAGCCTATC+AGG | 0.353963 | 6_2:+79770556 | Msa0930700:CDS |
| GGAATAGAGGCACATGAATA+TGG | 0.366935 | 6_2:+79768988 | Msa0930700:CDS |
| TGCTGAGGTGGCAGAAATAT+TGG | 0.367269 | 6_2:+79768957 | Msa0930700:CDS |
| GTTTCCAAAGCACTCCTGAT+AGG | 0.367638 | 6_2:-79770570 | None:intergenic |
| TTGGCATGGCAGGTTTGAGC+TGG | 0.371854 | 6_2:+79770347 | Msa0930700:intron |
| GCAGAAATATTGGCTGAGTA+TGG | 0.383074 | 6_2:+79768967 | Msa0930700:CDS |
| TACAATGCTCTTCTTGGATC+TGG | 0.387148 | 6_2:-79770381 | None:intergenic |
| GGCGGCGACTTCGGCGATGC+CGG | 0.389084 | 6_2:-79768637 | None:intergenic |
| GCCCTCGCCGCCGGTCTCTC+TGG | 0.390424 | 6_2:+79768582 | Msa0930700:CDS |
| CGCCGCCGGCGCCATCTCCA+TGG | 0.394416 | 6_2:+79768653 | Msa0930700:CDS |
| GGCTCTGTTTCTCAGGTTCA+AGG | 0.398656 | 6_2:-79768467 | None:intergenic |
| TATAACAACAGTTACACATT+AGG | 0.402678 | 6_2:+79768349 | Msa0930700:five_prime_UTR |
| ATGTTACTTGCGGTGGCAAC+TGG | 0.405180 | 6_2:+79770703 | Msa0930700:three_prime_UTR |
| CTTCTTTGATAGTTGATACA+TGG | 0.407242 | 6_2:+79770818 | Msa0930700:three_prime_UTR |
| TTGAGAAGGCTCTGTTTCTC+AGG | 0.409645 | 6_2:-79768474 | None:intergenic |
| CATGGAATGAGCGATCATTA+TGG | 0.412485 | 6_2:+79770836 | Msa0930700:three_prime_UTR |
| TGTGTTGTCGTGAAGGTATT+TGG | 0.412813 | 6_2:+79768768 | Msa0930700:intron |
| GGCGCCATCTCCATGGGTCT+CGG | 0.413142 | 6_2:+79768660 | Msa0930700:CDS |
| AGAACAGCCTCTGATGCATT+AGG | 0.414520 | 6_2:-79770474 | None:intergenic |
| GGCATCGCCGAAGTCGCCGC+CGG | 0.418402 | 6_2:+79768639 | Msa0930700:CDS |
| GATGGCGCCGGCGGCGACTT+CGG | 0.423405 | 6_2:-79768646 | None:intergenic |
| ATCGTTACAGTACCAGAAAC+TGG | 0.426709 | 6_2:+79768847 | Msa0930700:CDS |
| AGACCGGCGGCGAGGGCGAA+AGG | 0.430567 | 6_2:-79768576 | None:intergenic |
| AATTGCTATTGCTTACGTAT+TGG | 0.433881 | 6_2:+79770416 | Msa0930700:CDS |
| ATTACAATAGAGAATTGAAA+AGG | 0.434289 | 6_2:+79768812 | Msa0930700:CDS |
| TCTGAAAGAGCATGAAACTA+TGG | 0.439000 | 6_2:-79770651 | None:intergenic |
| ATCACATACACTTGTTCAAA+TGG | 0.440123 | 6_2:+79768416 | Msa0930700:exon |
| CCATTTAACACCTCTTCAAA+TGG | 0.440813 | 6_2:-79770880 | None:intergenic |
| ACTCCTGATAGGCTTGTTGC+CGG | 0.441410 | 6_2:-79770559 | None:intergenic |
| GCTTATCTTTGGCTTTGTCA+AGG | 0.444850 | 6_2:+79770527 | Msa0930700:CDS |
| CTTATCTTTGGCTTTGTCAA+GGG | 0.448135 | 6_2:+79770528 | Msa0930700:CDS |
| TTTGTCAAGGGATGCTTCAC+CGG | 0.449841 | 6_2:+79770540 | Msa0930700:CDS |
| CAAGCCTATCAGGAGTGCTT+TGG | 0.453512 | 6_2:+79770566 | Msa0930700:CDS |
| GTTCCTTTCGCCCTCGCCGC+CGG | 0.459488 | 6_2:+79768573 | Msa0930700:CDS |
| AGCATTGGCGCCAGAGAGAC+CGG | 0.471916 | 6_2:-79768592 | None:intergenic |
| GCCAGAGAGACCGGCGGCGA+GGG | 0.479185 | 6_2:-79768583 | None:intergenic |
| TCTTCCATCGTTCTCACTGC+CGG | 0.485751 | 6_2:+79768618 | Msa0930700:CDS |
| GGCTGTTCTTGTTTCAGTGG+TGG | 0.490681 | 6_2:+79770488 | Msa0930700:CDS |
| ATCATCATCGGCGTTTCTGA+TGG | 0.491623 | 6_2:+79768543 | Msa0930700:CDS |
| AGCTGCTTATGGTTTGGCAA+AGG | 0.497745 | 6_2:+79770620 | Msa0930700:CDS |
| CTTGTTCAAATGGCTGGTAA+TGG | 0.501587 | 6_2:+79768426 | Msa0930700:exon |
| TGAAGGTATTTGGCAGCAAA+AGG | 0.504633 | 6_2:+79768778 | Msa0930700:intron |
| AGAGGCTGTTCTTGTTTCAG+TGG | 0.506618 | 6_2:+79770485 | Msa0930700:CDS |
| ACCTCTTCAAATGGTGGCGG+CGG | 0.506745 | 6_2:-79770871 | None:intergenic |
| AAATGGCTATTGTTACAAGA+TGG | 0.507486 | 6_2:+79770897 | Msa0930700:three_prime_UTR |
| GCCGCCGGCGCCATCTCCAT+GGG | 0.507839 | 6_2:+79768654 | Msa0930700:CDS |
| ATTGGCTGAGTATGGAATAG+AGG | 0.509860 | 6_2:+79768975 | Msa0930700:CDS |
| TGGCATGGCAGGTTTGAGCT+GGG | 0.517647 | 6_2:+79770348 | Msa0930700:intron |
| ACCCATGGAGATGGCGCCGG+CGG | 0.521241 | 6_2:-79768655 | None:intergenic |
| GCATTAGGAATGAACATGTA+AGG | 0.527058 | 6_2:-79770459 | None:intergenic |
| CATACACTTGTTCAAATGGC+TGG | 0.531327 | 6_2:+79768420 | Msa0930700:exon |
| AACGATGGAAGAAGTAGCAT+TGG | 0.541787 | 6_2:-79768607 | None:intergenic |
| GCCGCCGCCACCATTTGAAG+AGG | 0.547229 | 6_2:+79770870 | Msa0930700:three_prime_UTR |
| TTACAATAGAGAATTGAAAA+GGG | 0.552550 | 6_2:+79768813 | Msa0930700:CDS |
| TTTCTCAGAGCATTCACCAC+AGG | 0.554204 | 6_2:-79769012 | None:intergenic |
| TGTATCAACTATCAAAGAAG+AGG | 0.555184 | 6_2:-79770815 | None:intergenic |
| GGCGGCGAGGGCGAAAGGAA+CGG | 0.558595 | 6_2:-79768571 | None:intergenic |
| AACACCTCTTCAAATGGTGG+CGG | 0.559350 | 6_2:-79770874 | None:intergenic |
| ATAAGCAGCTGCAGAGGCAA+TGG | 0.561549 | 6_2:-79770607 | None:intergenic |
| TTTCAGTGTGGCGATTGAGA+AGG | 0.562660 | 6_2:-79768488 | None:intergenic |
| CCCTCCGAGACCCATGGAGA+TGG | 0.565170 | 6_2:-79768664 | None:intergenic |
| CGCCAGAGAGACCGGCGGCG+AGG | 0.570875 | 6_2:-79768584 | None:intergenic |
| TATTTCAGAAGCTGCTGAGG+TGG | 0.571673 | 6_2:+79768945 | Msa0930700:intron |
| TGTCTATTTGATGTTACTTG+CGG | 0.578506 | 6_2:+79770693 | Msa0930700:three_prime_UTR |
| GCTATTGCTTACGTATTGGG+TGG | 0.579839 | 6_2:+79770420 | Msa0930700:CDS |
| GAGACCCATGGAGATGGCGC+CGG | 0.581337 | 6_2:-79768658 | None:intergenic |
| TTAAATGGTTCATGAAAATG+TGG | 0.587834 | 6_2:-79770746 | None:intergenic |
| CCATCTCCATGGGTCTCGGA+GGG | 0.588120 | 6_2:+79768664 | Msa0930700:CDS |
| TATTATTTCAGAAGCTGCTG+AGG | 0.589707 | 6_2:+79768942 | Msa0930700:intron |
| ACTGAAAAGCACTTCACCGC+CGG | 0.593901 | 6_2:+79768504 | Msa0930700:CDS |
| GATGTCACGGACGATCTCAC+CGG | 0.594283 | 6_2:-79768523 | None:intergenic |
| ATGAACATGTAAGGAATGAG+AGG | 0.596128 | 6_2:-79770450 | None:intergenic |
| AAAGAGCATGAAACTATGGA+TGG | 0.598379 | 6_2:-79770647 | None:intergenic |
| ATGTTACCCTCCGAGACCCA+TGG | 0.602772 | 6_2:-79768670 | None:intergenic |
| CTATTTGATGTTACTTGCGG+TGG | 0.606313 | 6_2:+79770696 | Msa0930700:three_prime_UTR |
| TTTAACACCTCTTCAAATGG+TGG | 0.612867 | 6_2:-79770877 | None:intergenic |
| TGAGAAAGAATCCTCAAGCA+TGG | 0.613689 | 6_2:+79769028 | Msa0930700:CDS |
| GCCATCTCCATGGGTCTCGG+AGG | 0.615331 | 6_2:+79768663 | Msa0930700:CDS |
| CAAACCATAAGCAGCTGCAG+AGG | 0.616863 | 6_2:-79770613 | None:intergenic |
| GTTCATTCCTAATGCATCAG+AGG | 0.624017 | 6_2:+79770467 | Msa0930700:CDS |
| ATGAAATCAAGCCATGCTTG+AGG | 0.632968 | 6_2:-79769039 | None:intergenic |
| ATCGTCCGTGACATCATCAT+CGG | 0.638810 | 6_2:+79768531 | Msa0930700:CDS |
| AAACGCCGATGATGATGTCA+CGG | 0.645259 | 6_2:-79768536 | None:intergenic |
| GTCACGGACGATCTCACCGG+CGG | 0.688191 | 6_2:-79768520 | None:intergenic |
| GGCACATGAATATGGACCTG+TGG | 0.703794 | 6_2:+79768996 | Msa0930700:CDS |
| ATTGGCGCCAGAGAGACCGG+CGG | 0.726652 | 6_2:-79768589 | None:intergenic |
| GATGCCGGCAGTGAGAACGA+TGG | 0.747818 | 6_2:-79768622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATAGAAAAAGTTTT+CGG | - | chr6_2:79769446-79769465 | None:intergenic | 10.0% |
| !! | TTATTAAAATAAGATTGATA+TGG | + | chr6_2:79769959-79769978 | Msa0930700:intron | 10.0% |
| !! | TATGATAAAAATTGAAATTG+AGG | - | chr6_2:79769558-79769577 | None:intergenic | 15.0% |
| !! | TATAAGTAAATAAATATCTC+TGG | + | chr6_2:79769838-79769857 | Msa0930700:intron | 15.0% |
| !! | TTCTTCATAGTATTAAAAAA+AGG | - | chr6_2:79770045-79770064 | None:intergenic | 15.0% |
| !! | GAACAAATTAATTAACAAAT+TGG | + | chr6_2:79770320-79770339 | Msa0930700:intron | 15.0% |
| !! | ATTACAATAGAGAATTGAAA+AGG | + | chr6_2:79768812-79768831 | Msa0930700:CDS | 20.0% |
| !! | TTACAATAGAGAATTGAAAA+GGG | + | chr6_2:79768813-79768832 | Msa0930700:CDS | 20.0% |
| !!! | AAAGTAATTTGTCCAAAATT+TGG | + | chr6_2:79769121-79769140 | Msa0930700:intron | 20.0% |
| !! | AATTTGTGTGAAGATAAAAT+AGG | + | chr6_2:79769515-79769534 | Msa0930700:intron | 20.0% |
| !!! | GGTTTGGAATAAAAAAAAAA+TGG | - | chr6_2:79769582-79769601 | None:intergenic | 20.0% |
| !!! | TGTTTTGAAAAACGTTTTTT+AGG | - | chr6_2:79769886-79769905 | None:intergenic | 20.0% |
| !!! | TACTTTAGAAATCAAATTAG+AGG | + | chr6_2:79769984-79770003 | Msa0930700:intron | 20.0% |
| !!! | GTATTCTAGAAACAATAAAA+AGG | - | chr6_2:79770230-79770249 | None:intergenic | 20.0% |
| !!! | GAAATTAATTCACGTTTTTA+AGG | - | chr6_2:79770259-79770278 | None:intergenic | 20.0% |
| !! | TAATTAACAAATTGGTTACT+TGG | + | chr6_2:79770328-79770347 | Msa0930700:intron | 20.0% |
| ! | TATAACAACAGTTACACATT+AGG | + | chr6_2:79768349-79768368 | Msa0930700:five_prime_UTR | 25.0% |
| !!! | CTAGAAAGTGATTTTAGAAT+TGG | - | chr6_2:79768388-79768407 | None:intergenic | 25.0% |
| !! | GATGTTAATTTAAAGTTGTG+TGG | - | chr6_2:79769397-79769416 | None:intergenic | 25.0% |
| ! | GAAGATAAAATAGGTAAACA+AGG | + | chr6_2:79769524-79769543 | Msa0930700:intron | 25.0% |
| !!! | ACATTGATTCTACAATACAA+TGG | - | chr6_2:79769603-79769622 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACAGCTAGTT+AGG | + | chr6_2:79769767-79769786 | Msa0930700:intron | 25.0% |
| ! | TAAATAAATATCTCTGGTCT+TGG | + | chr6_2:79769844-79769863 | Msa0930700:intron | 25.0% |
| !! | ATGAATATAAGTTGGATTCA+TGG | - | chr6_2:79770079-79770098 | None:intergenic | 25.0% |
| ! | TATATTCATCCACCTTTATA+TGG | + | chr6_2:79770090-79770109 | Msa0930700:intron | 25.0% |
| ! | AAGGTGCATGTATATAAAAT+TGG | - | chr6_2:79770211-79770230 | None:intergenic | 25.0% |
| ! | ACGTGAATTAATTTCTACAA+TGG | + | chr6_2:79770264-79770283 | Msa0930700:intron | 25.0% |
| ! | TTAAATGGTTCATGAAAATG+TGG | - | chr6_2:79770749-79770768 | None:intergenic | 25.0% |
| !!! | TTCATGAACCATTTAACTTT+TGG | + | chr6_2:79770753-79770772 | Msa0930700:three_prime_UTR | 25.0% |
| ! | ATTTCAAGCCAAAAGTTAAA+TGG | - | chr6_2:79770764-79770783 | None:intergenic | 25.0% |
| ATCACATACACTTGTTCAAA+TGG | + | chr6_2:79768416-79768435 | Msa0930700:exon | 30.0% | |
| GTTGAATGTTAGTTATATGC+TGG | + | chr6_2:79769168-79769187 | Msa0930700:intron | 30.0% | |
| TGATTTCAGATTCCAAACTT+TGG | + | chr6_2:79769272-79769291 | Msa0930700:intron | 30.0% | |
| GATTCTACAATACAATGGTT+TGG | - | chr6_2:79769598-79769617 | None:intergenic | 30.0% | |
| TAATATTAAGCATATGCTCC+TGG | + | chr6_2:79769666-79769685 | Msa0930700:intron | 30.0% | |
| ! | TTTTATCCGTTTGCATTTCA+TGG | - | chr6_2:79769693-79769712 | None:intergenic | 30.0% |
| ATGAATAAATGATCATGTGC+AGG | + | chr6_2:79769790-79769809 | Msa0930700:intron | 30.0% | |
| AATTAGAGGTAGAGATTTAC+TGG | + | chr6_2:79769998-79770017 | Msa0930700:intron | 30.0% | |
| AAAGGTGGATGAATATAAGT+TGG | - | chr6_2:79770087-79770106 | None:intergenic | 30.0% | |
| ATGTAGAAACCATATAAAGG+TGG | - | chr6_2:79770102-79770121 | None:intergenic | 30.0% | |
| TGCATGTAGAAACCATATAA+AGG | - | chr6_2:79770105-79770124 | None:intergenic | 30.0% | |
| ! | AATTGCTATTGCTTACGTAT+TGG | + | chr6_2:79770416-79770435 | Msa0930700:CDS | 30.0% |
| ! | ATTGCTATTGCTTACGTATT+GGG | + | chr6_2:79770417-79770436 | Msa0930700:CDS | 30.0% |
| TTGATTGCTTTGCTTATCTT+TGG | + | chr6_2:79770516-79770535 | Msa0930700:CDS | 30.0% | |
| ! | TGTCTATTTGATGTTACTTG+CGG | + | chr6_2:79770693-79770712 | Msa0930700:three_prime_UTR | 30.0% |
| !!! | CTTTTGGCTTGAAATTTTTG+TGG | + | chr6_2:79770769-79770788 | Msa0930700:three_prime_UTR | 30.0% |
| TGTATCAACTATCAAAGAAG+AGG | - | chr6_2:79770818-79770837 | None:intergenic | 30.0% | |
| ! | CTTCTTTGATAGTTGATACA+TGG | + | chr6_2:79770818-79770837 | Msa0930700:three_prime_UTR | 30.0% |
| AAATGGCTATTGTTACAAGA+TGG | + | chr6_2:79770897-79770916 | Msa0930700:three_prime_UTR | 30.0% | |
| !! | GTTACACATTAGGCTTTGTT+TGG | + | chr6_2:79768359-79768378 | Msa0930700:five_prime_UTR | 35.0% |
| TATTATTTCAGAAGCTGCTG+AGG | + | chr6_2:79768942-79768961 | Msa0930700:intron | 35.0% | |
| ! | GCATTGCAAACTCCAAATTT+TGG | - | chr6_2:79769136-79769155 | None:intergenic | 35.0% |
| !!! | AAAGAGAAAGGCACTTTTTC+TGG | + | chr6_2:79769206-79769225 | Msa0930700:intron | 35.0% |
| TACACCGATACTATTTGGTT+TGG | + | chr6_2:79769310-79769329 | Msa0930700:intron | 35.0% | |
| GAGTCCAAACCAAATAGTAT+CGG | - | chr6_2:79769317-79769336 | None:intergenic | 35.0% | |
| ATAAAAGAAACCCACGTGTA+AGG | - | chr6_2:79769743-79769762 | None:intergenic | 35.0% | |
| !! | AAATATCTCTGGTCTTGGTT+TGG | + | chr6_2:79769849-79769868 | Msa0930700:intron | 35.0% |
| !! | ATTCACGTTTTTAAGGAAGC+AGG | - | chr6_2:79770252-79770271 | None:intergenic | 35.0% |
| AACAAATTGGTTACTTGGCA+TGG | + | chr6_2:79770333-79770352 | Msa0930700:intron | 35.0% | |
| ATGAACATGTAAGGAATGAG+AGG | - | chr6_2:79770453-79770472 | None:intergenic | 35.0% | |
| GCATTAGGAATGAACATGTA+AGG | - | chr6_2:79770462-79770481 | None:intergenic | 35.0% | |
| !! | CTTATCTTTGGCTTTGTCAA+GGG | + | chr6_2:79770528-79770547 | Msa0930700:CDS | 35.0% |
| ! | AAAGAGCATGAAACTATGGA+TGG | - | chr6_2:79770650-79770669 | None:intergenic | 35.0% |
| ! | TCTGAAAGAGCATGAAACTA+TGG | - | chr6_2:79770654-79770673 | None:intergenic | 35.0% |
| TTTAACACCTCTTCAAATGG+TGG | - | chr6_2:79770880-79770899 | None:intergenic | 35.0% | |
| CCATTTAACACCTCTTCAAA+TGG | - | chr6_2:79770883-79770902 | None:intergenic | 35.0% | |
| !! | CCATTTGAAGAGGTGTTAAA+TGG | + | chr6_2:79770880-79770899 | Msa0930700:three_prime_UTR | 35.0% |
| CATACACTTGTTCAAATGGC+TGG | + | chr6_2:79768420-79768439 | Msa0930700:exon | 40.0% | |
| CTTGTTCAAATGGCTGGTAA+TGG | + | chr6_2:79768426-79768445 | Msa0930700:exon | 40.0% | |
| AACGATGGAAGAAGTAGCAT+TGG | - | chr6_2:79768610-79768629 | None:intergenic | 40.0% | |
| ACTATGTTGTGTTGTCGTGA+AGG | + | chr6_2:79768761-79768780 | Msa0930700:intron | 40.0% | |
| !! | TGTGTTGTCGTGAAGGTATT+TGG | + | chr6_2:79768768-79768787 | Msa0930700:intron | 40.0% |
| !! | TGAAGGTATTTGGCAGCAAA+AGG | + | chr6_2:79768778-79768797 | Msa0930700:intron | 40.0% |
| ATCGTTACAGTACCAGAAAC+TGG | + | chr6_2:79768847-79768866 | Msa0930700:CDS | 40.0% | |
| TTACGATACGAACCAGTTTC+TGG | - | chr6_2:79768862-79768881 | None:intergenic | 40.0% | |
| ! | GCAGAAATATTGGCTGAGTA+TGG | + | chr6_2:79768967-79768986 | Msa0930700:CDS | 40.0% |
| ATTGGCTGAGTATGGAATAG+AGG | + | chr6_2:79768975-79768994 | Msa0930700:CDS | 40.0% | |
| ! | GGAATAGAGGCACATGAATA+TGG | + | chr6_2:79768988-79769007 | Msa0930700:CDS | 40.0% |
| TGAGAAAGAATCCTCAAGCA+TGG | + | chr6_2:79769028-79769047 | Msa0930700:CDS | 40.0% | |
| ATGAAATCAAGCCATGCTTG+AGG | - | chr6_2:79769042-79769061 | None:intergenic | 40.0% | |
| TAGTTATATGCTGGCAAGAG+TGG | + | chr6_2:79769177-79769196 | Msa0930700:intron | 40.0% | |
| AGTTATATGCTGGCAAGAGT+GGG | + | chr6_2:79769178-79769197 | Msa0930700:intron | 40.0% | |
| !!! | AAAGGCACTTTTTCTGGTTG+TGG | + | chr6_2:79769212-79769231 | Msa0930700:intron | 40.0% |
| !!! | AAGGCACTTTTTCTGGTTGT+GGG | + | chr6_2:79769213-79769232 | Msa0930700:intron | 40.0% |
| !! | CAAATAGTATCGGTGTACTG+TGG | - | chr6_2:79769307-79769326 | None:intergenic | 40.0% |
| CACAGTACACCGATACTATT+TGG | + | chr6_2:79769305-79769324 | Msa0930700:intron | 40.0% | |
| TAGAGGTAGAGATTTACTGG+TGG | + | chr6_2:79770001-79770020 | Msa0930700:intron | 40.0% | |
| TACAATGCTCTTCTTGGATC+TGG | - | chr6_2:79770384-79770403 | None:intergenic | 40.0% | |
| GCACTATACAATGCTCTTCT+TGG | - | chr6_2:79770390-79770409 | None:intergenic | 40.0% | |
| GTTCATTCCTAATGCATCAG+AGG | + | chr6_2:79770467-79770486 | Msa0930700:CDS | 40.0% | |
| !! | GCTTATCTTTGGCTTTGTCA+AGG | + | chr6_2:79770527-79770546 | Msa0930700:CDS | 40.0% |
| !! | GCTTTGGAAACTGCTCTAAT+TGG | + | chr6_2:79770582-79770601 | Msa0930700:CDS | 40.0% |
| ! | CTATTTGATGTTACTTGCGG+TGG | + | chr6_2:79770696-79770715 | Msa0930700:three_prime_UTR | 40.0% |
| CATGGAATGAGCGATCATTA+TGG | + | chr6_2:79770836-79770855 | Msa0930700:three_prime_UTR | 40.0% | |
| ! | TTGAGAAGGCTCTGTTTCTC+AGG | - | chr6_2:79768477-79768496 | None:intergenic | 45.0% |
| TTTCAGTGTGGCGATTGAGA+AGG | - | chr6_2:79768491-79768510 | None:intergenic | 45.0% | |
| ATCGTCCGTGACATCATCAT+CGG | + | chr6_2:79768531-79768550 | Msa0930700:CDS | 45.0% | |
| ! | AAACGCCGATGATGATGTCA+CGG | - | chr6_2:79768539-79768558 | None:intergenic | 45.0% |
| ATCATCATCGGCGTTTCTGA+TGG | + | chr6_2:79768543-79768562 | Msa0930700:CDS | 45.0% | |
| TATTTCAGAAGCTGCTGAGG+TGG | + | chr6_2:79768945-79768964 | Msa0930700:intron | 45.0% | |
| TGCTGAGGTGGCAGAAATAT+TGG | + | chr6_2:79768957-79768976 | Msa0930700:CDS | 45.0% | |
| ! | TTTCTCAGAGCATTCACCAC+AGG | - | chr6_2:79769015-79769034 | None:intergenic | 45.0% |
| GAGTGGGATTGGAAAGAGAA+AGG | + | chr6_2:79769194-79769213 | Msa0930700:intron | 45.0% | |
| !!! | GGGTTTCCACTTTTTCAGTG+TGG | + | chr6_2:79769233-79769252 | Msa0930700:intron | 45.0% |
| GCATGTCCACACTGAAAAAG+TGG | - | chr6_2:79769242-79769261 | None:intergenic | 45.0% | |
| CCTGGTCCATGAAATGCAAA+CGG | + | chr6_2:79769684-79769703 | Msa0930700:intron | 45.0% | |
| ATCCTAGAGAACCTTACACG+TGG | + | chr6_2:79769729-79769748 | Msa0930700:intron | 45.0% | |
| TCCTAGAGAACCTTACACGT+GGG | + | chr6_2:79769730-79769749 | Msa0930700:intron | 45.0% | |
| AATTGGTTACTTGGCATGGC+AGG | + | chr6_2:79770337-79770356 | Msa0930700:intron | 45.0% | |
| GCTATTGCTTACGTATTGGG+TGG | + | chr6_2:79770420-79770439 | Msa0930700:CDS | 45.0% | |
| AGAACAGCCTCTGATGCATT+AGG | - | chr6_2:79770477-79770496 | None:intergenic | 45.0% | |
| ! | AGAGGCTGTTCTTGTTTCAG+TGG | + | chr6_2:79770485-79770504 | Msa0930700:CDS | 45.0% |
| TTTGTCAAGGGATGCTTCAC+CGG | + | chr6_2:79770540-79770559 | Msa0930700:CDS | 45.0% | |
| ! | GTTTCCAAAGCACTCCTGAT+AGG | - | chr6_2:79770573-79770592 | None:intergenic | 45.0% |
| ! | AGCTGCTTATGGTTTGGCAA+AGG | + | chr6_2:79770620-79770639 | Msa0930700:CDS | 45.0% |
| AACACCTCTTCAAATGGTGG+CGG | - | chr6_2:79770877-79770896 | None:intergenic | 45.0% | |
| !!! | ATTTTATTTATTCTAAAAAA+TGG | + | chr6_2:79768888-79768907 | Msa0930700:intron | 5.0% |
| ! | GGCTCTGTTTCTCAGGTTCA+AGG | - | chr6_2:79768470-79768489 | None:intergenic | 50.0% |
| !! | CGGTGAAGTGCTTTTCAGTG+TGG | - | chr6_2:79768503-79768522 | None:intergenic | 50.0% |
| !! | ACTGAAAAGCACTTCACCGC+CGG | + | chr6_2:79768504-79768523 | Msa0930700:CDS | 50.0% |
| TCTTCCATCGTTCTCACTGC+CGG | + | chr6_2:79768618-79768637 | Msa0930700:CDS | 50.0% | |
| GGCACATGAATATGGACCTG+TGG | + | chr6_2:79768996-79769015 | Msa0930700:CDS | 50.0% | |
| TATGCTGGCAAGAGTGGGAT+TGG | + | chr6_2:79769183-79769202 | Msa0930700:intron | 50.0% | |
| TGGCACGCATGACCAAAGTT+TGG | - | chr6_2:79769287-79769306 | None:intergenic | 50.0% | |
| CCGTTTGCATTTCATGGACC+AGG | - | chr6_2:79769687-79769706 | None:intergenic | 50.0% | |
| ACCCACGTGTAAGGTTCTCT+AGG | - | chr6_2:79769734-79769753 | None:intergenic | 50.0% | |
| ! | GGCTGTTCTTGTTTCAGTGG+TGG | + | chr6_2:79770488-79770507 | Msa0930700:CDS | 50.0% |
| !! | ACTCCTGATAGGCTTGTTGC+CGG | - | chr6_2:79770562-79770581 | None:intergenic | 50.0% |
| !! | CAAGCCTATCAGGAGTGCTT+TGG | + | chr6_2:79770566-79770585 | Msa0930700:CDS | 50.0% |
| ATAAGCAGCTGCAGAGGCAA+TGG | - | chr6_2:79770610-79770629 | None:intergenic | 50.0% | |
| ATTGCCTCTGCAGCTGCTTA+TGG | + | chr6_2:79770609-79770628 | Msa0930700:CDS | 50.0% | |
| CAAACCATAAGCAGCTGCAG+AGG | - | chr6_2:79770616-79770635 | None:intergenic | 50.0% | |
| CTCTGCAGCTGCTTATGGTT+TGG | + | chr6_2:79770614-79770633 | Msa0930700:CDS | 50.0% | |
| ! | ATGTTACTTGCGGTGGCAAC+TGG | + | chr6_2:79770703-79770722 | Msa0930700:three_prime_UTR | 50.0% |
| GATGTCACGGACGATCTCAC+CGG | - | chr6_2:79768526-79768545 | None:intergenic | 55.0% | |
| ATGTTACCCTCCGAGACCCA+TGG | - | chr6_2:79768673-79768692 | None:intergenic | 55.0% | |
| TTGGCATGGCAGGTTTGAGC+TGG | + | chr6_2:79770347-79770366 | Msa0930700:intron | 55.0% | |
| TGGCATGGCAGGTTTGAGCT+GGG | + | chr6_2:79770348-79770367 | Msa0930700:intron | 55.0% | |
| TCACCGGCAACAAGCCTATC+AGG | + | chr6_2:79770556-79770575 | Msa0930700:CDS | 55.0% | |
| !! | ACCTCTTCAAATGGTGGCGG+CGG | - | chr6_2:79770874-79770893 | None:intergenic | 55.0% |
| !! | AGCATTGGCGCCAGAGAGAC+CGG | - | chr6_2:79768595-79768614 | None:intergenic | 60.0% |
| GATGCCGGCAGTGAGAACGA+TGG | - | chr6_2:79768625-79768644 | None:intergenic | 60.0% | |
| CCATCTCCATGGGTCTCGGA+GGG | + | chr6_2:79768664-79768683 | Msa0930700:CDS | 60.0% | |
| GTCACGGACGATCTCACCGG+CGG | - | chr6_2:79768523-79768542 | None:intergenic | 65.0% | |
| ATTGGCGCCAGAGAGACCGG+CGG | - | chr6_2:79768592-79768611 | None:intergenic | 65.0% | |
| GAGACCCATGGAGATGGCGC+CGG | - | chr6_2:79768661-79768680 | None:intergenic | 65.0% | |
| GGCGCCATCTCCATGGGTCT+CGG | + | chr6_2:79768660-79768679 | Msa0930700:CDS | 65.0% | |
| GCCATCTCCATGGGTCTCGG+AGG | + | chr6_2:79768663-79768682 | Msa0930700:CDS | 65.0% | |
| CCCTCCGAGACCCATGGAGA+TGG | - | chr6_2:79768667-79768686 | None:intergenic | 65.0% | |
| GCCGCCGCCACCATTTGAAG+AGG | + | chr6_2:79770870-79770889 | Msa0930700:three_prime_UTR | 65.0% | |
| GGCGGCGAGGGCGAAAGGAA+CGG | - | chr6_2:79768574-79768593 | None:intergenic | 70.0% | |
| GTTCCTTTCGCCCTCGCCGC+CGG | + | chr6_2:79768573-79768592 | Msa0930700:CDS | 70.0% | |
| ! | ACCCATGGAGATGGCGCCGG+CGG | - | chr6_2:79768658-79768677 | None:intergenic | 70.0% |
| AGACCGGCGGCGAGGGCGAA+AGG | - | chr6_2:79768579-79768598 | None:intergenic | 75.0% | |
| GCCAGAGAGACCGGCGGCGA+GGG | - | chr6_2:79768586-79768605 | None:intergenic | 75.0% | |
| GGCGGCGACTTCGGCGATGC+CGG | - | chr6_2:79768640-79768659 | None:intergenic | 75.0% | |
| GGCATCGCCGAAGTCGCCGC+CGG | + | chr6_2:79768639-79768658 | Msa0930700:CDS | 75.0% | |
| !! | GATGGCGCCGGCGGCGACTT+CGG | - | chr6_2:79768649-79768668 | None:intergenic | 75.0% |
| GCCGCCGGCGCCATCTCCAT+GGG | + | chr6_2:79768654-79768673 | Msa0930700:CDS | 75.0% | |
| ! | GCCCTCGCCGCCGGTCTCTC+TGG | + | chr6_2:79768582-79768601 | Msa0930700:CDS | 80.0% |
| ! | CGCCAGAGAGACCGGCGGCG+AGG | - | chr6_2:79768587-79768606 | None:intergenic | 80.0% |
| ! | CGCCGCCGGCGCCATCTCCA+TGG | + | chr6_2:79768653-79768672 | Msa0930700:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 79768340 | 79770920 | 79768340 | ID=Msa0930700;Name=Msa0930700 |
| chr6_2 | mRNA | 79768340 | 79770920 | 79768340 | ID=Msa0930700-mRNA-1;Parent=Msa0930700;Name=Msa0930700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=95|1|1|1|1|1|4|264|249 |
| chr6_2 | exon | 79768340 | 79768685 | 79768340 | ID=Msa0930700-mRNA-1:exon:13802;Parent=Msa0930700-mRNA-1 |
| chr6_2 | exon | 79768783 | 79768868 | 79768783 | ID=Msa0930700-mRNA-1:exon:13803;Parent=Msa0930700-mRNA-1 |
| chr6_2 | exon | 79768953 | 79769067 | 79768953 | ID=Msa0930700-mRNA-1:exon:13804;Parent=Msa0930700-mRNA-1 |
| chr6_2 | exon | 79770359 | 79770920 | 79770359 | ID=Msa0930700-mRNA-1:exon:13805;Parent=Msa0930700-mRNA-1 |
| chr6_2 | five_prime_UTR | 79768340 | 79768434 | 79768340 | ID=Msa0930700-mRNA-1:five_prime_utr;Parent=Msa0930700-mRNA-1 |
| chr6_2 | CDS | 79768435 | 79768685 | 79768435 | ID=Msa0930700-mRNA-1:cds;Parent=Msa0930700-mRNA-1 |
| chr6_2 | CDS | 79768783 | 79768868 | 79768783 | ID=Msa0930700-mRNA-1:cds;Parent=Msa0930700-mRNA-1 |
| chr6_2 | CDS | 79768953 | 79769067 | 79768953 | ID=Msa0930700-mRNA-1:cds;Parent=Msa0930700-mRNA-1 |
| chr6_2 | CDS | 79770359 | 79770656 | 79770359 | ID=Msa0930700-mRNA-1:cds;Parent=Msa0930700-mRNA-1 |
| chr6_2 | three_prime_UTR | 79770657 | 79770920 | 79770657 | ID=Msa0930700-mRNA-1:three_prime_utr;Parent=Msa0930700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
