AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0612950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612950 MtrunA17_Chr4g0047741 96.373 193 7 0 1 193 1 193 2.12e-132 369
Msa0612950 MtrunA17_Chr3g0086951 40.000 175 92 4 25 191 18 187 6.57e-21 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612950 AT1G74730.1 64.583 192 66 2 3 193 8 198 6.30e-66 201
Msa0612950 AT5G08050.1 40.000 125 67 2 72 193 39 158 6.57e-15 69.3

Find 56 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGGTGTTGGGGCTGTT+GGG 0.261115 4_2:-61490641 Msa0612950:CDS
TGCGGTCTCTCCTTCCGTTT+TGG 0.280512 4_2:-61490766 Msa0612950:CDS
GCTCTTGGTGTTGGGGCTGT+TGG 0.285475 4_2:-61490642 Msa0612950:CDS
TTGCTGCTGCTCTTGGTGTT+GGG 0.287275 4_2:-61490650 Msa0612950:CDS
TCTGTCACTTCCGACGCTTT+TGG 0.320526 4_2:-61490739 Msa0612950:CDS
AAAGACGGTGAAAGGTTTAT+TGG 0.327341 4_2:+61491142 None:intergenic
GATAAGGAAAAGATAGATAA+AGG 0.353630 4_2:-61491404 Msa0612950:five_prime_UTR
GTTGCTGCTGCTCTTGGTGT+TGG 0.359407 4_2:-61490651 Msa0612950:CDS
TGAACAAGTACAACGATAAC+TGG 0.365581 4_2:-61491013 Msa0612950:CDS
GCTGTTGTTGCTGCTGCTCT+TGG 0.375504 4_2:-61490657 Msa0612950:CDS
GGGGCTGTTGGGTTGTTCGC+TGG 0.385149 4_2:-61490630 Msa0612950:CDS
TTATCCAAAGCTGAAGAATT+CGG 0.394470 4_2:-61490873 Msa0612950:CDS
GACGCCGAATTCTTCAGCTT+TGG 0.394886 4_2:+61490869 None:intergenic
TTCGCTGGATCTGTTGTTCT+CGG 0.420848 4_2:-61490615 Msa0612950:CDS
CTGGATCTGTTGTTCTCGGC+GGG 0.425729 4_2:-61490611 Msa0612950:CDS
TGCTGCTGCTCTTGGTGTTG+GGG 0.441410 4_2:-61490649 Msa0612950:CDS
CAACAAGATCGCACATGAAA+AGG 0.445504 4_2:-61491351 Msa0612950:five_prime_UTR
AAAGGTTTATTGGAGGAAGT+AGG 0.473704 4_2:+61491152 None:intergenic
AAGGTTTATTGGAGGAAGTA+GGG 0.490170 4_2:+61491153 None:intergenic
TGGAGAGCTGAGGCTGGAGC+AGG 0.499155 4_2:+61491227 None:intergenic
TACAGCTCTTGTTGTAGTAC+AGG 0.503991 4_2:-61490679 Msa0612950:CDS
TGAAGATGGAGAGCTGAGGC+TGG 0.515095 4_2:+61491221 None:intergenic
AACTGGAAGAAACAATGGTT+CGG 0.517807 4_2:-61490996 Msa0612950:CDS
ACCTTTCACCGTCTTTGCCA+TGG 0.518610 4_2:-61491135 Msa0612950:CDS
AAGAAACAATGGTTCGGAGC+AGG 0.525520 4_2:-61490990 Msa0612950:CDS
ACAAGAGCTGTAGTATCATC+AGG 0.530579 4_2:+61490690 None:intergenic
AGCGATAGTGACGGAGGGTG+CGG 0.535126 4_2:+61491180 None:intergenic
AAAAGATTACGAGATAGATA+AGG 0.544468 4_2:-61491420 None:intergenic
TTTGGGAGCCATGGCAAAGA+CGG 0.549608 4_2:+61491127 None:intergenic
GACGGTGAAAGGTTTATTGG+AGG 0.550094 4_2:+61491145 None:intergenic
AAGTGACAGAGAAGCCAAAA+CGG 0.551577 4_2:+61490752 None:intergenic
GCCATGGCAAAGACGGTGAA+AGG 0.551635 4_2:+61491134 None:intergenic
AGGAAGTGAAGAAGTAGAAG+TGG 0.552394 4_2:-61490955 Msa0612950:CDS
CTCTCTTCAATCGAGAAACT+AGG 0.554038 4_2:-61490843 Msa0612950:CDS
GACAGAGAAGCCAAAACGGA+AGG 0.555736 4_2:+61490756 None:intergenic
GGAGGGTGCGGTGGTTAGTG+TGG 0.562291 4_2:+61491192 None:intergenic
TTTGGCTGCTGTTGCGACGG+TGG 0.563007 4_2:-61490721 Msa0612950:CDS
TAGTGTGGATGTGTTGAAGA+TGG 0.568146 4_2:+61491207 None:intergenic
TGTTCTCGGCGGGTTGCAAG+AGG 0.570576 4_2:-61490601 Msa0612950:CDS
GGCTGGAGCAGGAACAGCCA+TGG 0.575531 4_2:+61491238 None:intergenic
CATCAATCAATCATCATCCA+TGG 0.577265 4_2:-61491255 Msa0612950:exon
GGTATGAGCAATACGACTGG+TGG 0.598192 4_2:-61491383 Msa0612950:five_prime_UTR
ACGATAACTGGAAGAAACAA+TGG 0.622411 4_2:-61491001 Msa0612950:CDS
GTATGAGCAATACGACTGGT+GGG 0.622950 4_2:-61491382 Msa0612950:five_prime_UTR
GATAGTGACGGAGGGTGCGG+TGG 0.630396 4_2:+61491183 None:intergenic
AAAGGTATGAGCAATACGAC+TGG 0.634129 4_2:-61491386 Msa0612950:five_prime_UTR
TAGGGAATGAGCGATAGTGA+CGG 0.635156 4_2:+61491171 None:intergenic
GCAACAGCAGCCAAAAGCGT+CGG 0.640980 4_2:+61490729 None:intergenic
GGAATGAGCGATAGTGACGG+AGG 0.658654 4_2:+61491174 None:intergenic
GCTGGATCTGTTGTTCTCGG+CGG 0.659281 4_2:-61490612 Msa0612950:CDS
GAATGAGCGATAGTGACGGA+GGG 0.663461 4_2:+61491175 None:intergenic
GGAGCAGGAATATTCTACGA+AGG 0.698664 4_2:-61490975 Msa0612950:CDS
TGCAATCTCAACTGCCACGT+AGG 0.711060 4_2:+61491297 None:intergenic
ACTCTATTGATTGTCCTACG+TGG 0.730232 4_2:-61491311 Msa0612950:five_prime_UTR
CTTATTAGAGAAACTCGCTG+CGG 0.756406 4_2:-61490784 Msa0612950:CDS
GTGTTGAAGATGGAGAGCTG+AGG 0.757316 4_2:+61491217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTGAATTTATGTTAA+TGG - chr4_2:61490789-61490808 Msa0612950:CDS 10.0%
!! TTTATTTGAATTTATGTTAA+TGG - chr4_2:61490789-61490808 Msa0612950:CDS 10.0%
!! AAATAATGATGAAAATGATG+AGG + chr4_2:61490756-61490775 None:intergenic 20.0%
!!! TGAATTTATGTTAATGGATA+TGG - chr4_2:61490795-61490814 Msa0612950:CDS 20.0%
!!! ATTTCTTTTCATGTAATACA+AGG - chr4_2:61491364-61491383 Msa0612950:five_prime_UTR 20.0%
!!! TTTCTTTTCATGTAATACAA+GGG - chr4_2:61491365-61491384 Msa0612950:five_prime_UTR 20.0%
!! AAATAATGATGAAAATGATG+AGG + chr4_2:61490756-61490775 None:intergenic 20.0%
!!! TGAATTTATGTTAATGGATA+TGG - chr4_2:61490795-61490814 Msa0612950:CDS 20.0%
!!! ATTTCTTTTCATGTAATACA+AGG - chr4_2:61491364-61491383 Msa0612950:five_prime_UTR 20.0%
!!! TTTCTTTTCATGTAATACAA+GGG - chr4_2:61491365-61491384 Msa0612950:five_prime_UTR 20.0%
! GATAAGGAAAAGATAGATAA+AGG - chr4_2:61490431-61490450 Msa0612950:three_prime_UTR 25.0%
!! TTTATGTTAATGGATATGGA+AGG - chr4_2:61490799-61490818 Msa0612950:CDS 25.0%
! AATTACAACAAAAACAACTG+CGG + chr4_2:61491289-61491308 None:intergenic 25.0%
! GATAAGGAAAAGATAGATAA+AGG - chr4_2:61490431-61490450 Msa0612950:three_prime_UTR 25.0%
!! TTTATGTTAATGGATATGGA+AGG - chr4_2:61490799-61490818 Msa0612950:CDS 25.0%
! AATTACAACAAAAACAACTG+CGG + chr4_2:61491289-61491308 None:intergenic 25.0%
! TGTGTATGTACCTTCTTTTT+GGG + chr4_2:61490728-61490747 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG + chr4_2:61490729-61490748 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG - chr4_2:61490962-61490981 Msa0612950:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG - chr4_2:61491006-61491025 Msa0612950:CDS 30.0%
! TGTGTATGTACCTTCTTTTT+GGG + chr4_2:61490728-61490747 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG + chr4_2:61490729-61490748 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG - chr4_2:61490962-61490981 Msa0612950:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG - chr4_2:61491006-61491025 Msa0612950:CDS 30.0%
CATCAATCAATCATCATCCA+TGG - chr4_2:61490580-61490599 Msa0612950:exon 35.0%
AAGGTTTATTGGAGGAAGTA+GGG + chr4_2:61490685-61490704 None:intergenic 35.0%
AAAGGTTTATTGGAGGAAGT+AGG + chr4_2:61490686-61490705 None:intergenic 35.0%
AAAGACGGTGAAAGGTTTAT+TGG + chr4_2:61490696-61490715 None:intergenic 35.0%
TGAACAAGTACAACGATAAC+TGG - chr4_2:61490822-61490841 Msa0612950:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG - chr4_2:61490834-61490853 Msa0612950:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG - chr4_2:61490839-61490858 Msa0612950:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG - chr4_2:61490935-61490954 Msa0612950:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG - chr4_2:61491009-61491028 Msa0612950:CDS 35.0%
CATCAATCAATCATCATCCA+TGG - chr4_2:61490580-61490599 Msa0612950:exon 35.0%
AAGGTTTATTGGAGGAAGTA+GGG + chr4_2:61490685-61490704 None:intergenic 35.0%
AAAGGTTTATTGGAGGAAGT+AGG + chr4_2:61490686-61490705 None:intergenic 35.0%
AAAGACGGTGAAAGGTTTAT+TGG + chr4_2:61490696-61490715 None:intergenic 35.0%
TGAACAAGTACAACGATAAC+TGG - chr4_2:61490822-61490841 Msa0612950:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG - chr4_2:61490834-61490853 Msa0612950:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG - chr4_2:61490839-61490858 Msa0612950:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG - chr4_2:61490935-61490954 Msa0612950:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG - chr4_2:61491009-61491028 Msa0612950:CDS 35.0%
! AAAGGTATGAGCAATACGAC+TGG - chr4_2:61490449-61490468 Msa0612950:three_prime_UTR 40.0%
CAACAAGATCGCACATGAAA+AGG - chr4_2:61490484-61490503 Msa0612950:three_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG - chr4_2:61490524-61490543 Msa0612950:three_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG + chr4_2:61490631-61490650 None:intergenic 40.0%
AGGAAGTGAAGAAGTAGAAG+TGG - chr4_2:61490880-61490899 Msa0612950:CDS 40.0%
CTCTCTTCAATCGAGAAACT+AGG - chr4_2:61490992-61491011 Msa0612950:CDS 40.0%
!!! TTTTCTAAGGCGGAAGAACT+TGG - chr4_2:61491019-61491038 Msa0612950:intron 40.0%
CTTATTAGAGAAACTCGCTG+CGG - chr4_2:61491051-61491070 Msa0612950:intron 40.0%
AAGTGACAGAGAAGCCAAAA+CGG + chr4_2:61491086-61491105 None:intergenic 40.0%
ACAAGAGCTGTAGTATCATC+AGG + chr4_2:61491148-61491167 None:intergenic 40.0%
! TACAGCTCTTGTTGTAGTAC+AGG - chr4_2:61491156-61491175 Msa0612950:CDS 40.0%
! AAAGGTATGAGCAATACGAC+TGG - chr4_2:61490449-61490468 Msa0612950:three_prime_UTR 40.0%
CAACAAGATCGCACATGAAA+AGG - chr4_2:61490484-61490503 Msa0612950:three_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG - chr4_2:61490524-61490543 Msa0612950:three_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG + chr4_2:61490631-61490650 None:intergenic 40.0%
AGGAAGTGAAGAAGTAGAAG+TGG - chr4_2:61490880-61490899 Msa0612950:CDS 40.0%
CTCTCTTCAATCGAGAAACT+AGG - chr4_2:61490992-61491011 Msa0612950:CDS 40.0%
!!! TTTTCTAAGGCGGAAGAACT+TGG - chr4_2:61491019-61491038 Msa0612950:intron 40.0%
CTTATTAGAGAAACTCGCTG+CGG - chr4_2:61491051-61491070 Msa0612950:intron 40.0%
AAGTGACAGAGAAGCCAAAA+CGG + chr4_2:61491086-61491105 None:intergenic 40.0%
ACAAGAGCTGTAGTATCATC+AGG + chr4_2:61491148-61491167 None:intergenic 40.0%
! TACAGCTCTTGTTGTAGTAC+AGG - chr4_2:61491156-61491175 Msa0612950:CDS 40.0%
GTATGAGCAATACGACTGGT+GGG - chr4_2:61490453-61490472 Msa0612950:three_prime_UTR 45.0%
TAGGGAATGAGCGATAGTGA+CGG + chr4_2:61490667-61490686 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG + chr4_2:61490693-61490712 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG + chr4_2:61490720-61490739 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG - chr4_2:61490845-61490864 Msa0612950:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG - chr4_2:61490860-61490879 Msa0612950:CDS 45.0%
TTCGCTGGATCTGTTGTTCT+CGG - chr4_2:61491220-61491239 Msa0612950:CDS 45.0%
GTATGAGCAATACGACTGGT+GGG - chr4_2:61490453-61490472 Msa0612950:three_prime_UTR 45.0%
TAGGGAATGAGCGATAGTGA+CGG + chr4_2:61490667-61490686 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG + chr4_2:61490693-61490712 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG + chr4_2:61490720-61490739 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG - chr4_2:61490845-61490864 Msa0612950:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG - chr4_2:61490860-61490879 Msa0612950:CDS 45.0%
TTCGCTGGATCTGTTGTTCT+CGG - chr4_2:61491220-61491239 Msa0612950:CDS 45.0%
GGTATGAGCAATACGACTGG+TGG - chr4_2:61490452-61490471 Msa0612950:three_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG + chr4_2:61490541-61490560 None:intergenic 50.0%
GTGTTGAAGATGGAGAGCTG+AGG + chr4_2:61490621-61490640 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG + chr4_2:61490663-61490682 None:intergenic 50.0%
ACCTTTCACCGTCTTTGCCA+TGG - chr4_2:61490700-61490719 Msa0612950:CDS 50.0%
TTTGGGAGCCATGGCAAAGA+CGG + chr4_2:61490711-61490730 None:intergenic 50.0%
TGCCATGGCTCCCAAAAAGA+AGG - chr4_2:61490715-61490734 Msa0612950:CDS 50.0%
GACGCCGAATTCTTCAGCTT+TGG + chr4_2:61490969-61490988 None:intergenic 50.0%
GACAGAGAAGCCAAAACGGA+AGG + chr4_2:61491082-61491101 None:intergenic 50.0%
!! TCTGTCACTTCCGACGCTTT+TGG - chr4_2:61491096-61491115 Msa0612950:intron 50.0%
!! TTGCTGCTGCTCTTGGTGTT+GGG - chr4_2:61491185-61491204 Msa0612950:CDS 50.0%
GGTATGAGCAATACGACTGG+TGG - chr4_2:61490452-61490471 Msa0612950:three_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG + chr4_2:61490541-61490560 None:intergenic 50.0%
GTGTTGAAGATGGAGAGCTG+AGG + chr4_2:61490621-61490640 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG + chr4_2:61490663-61490682 None:intergenic 50.0%
ACCTTTCACCGTCTTTGCCA+TGG - chr4_2:61490700-61490719 Msa0612950:CDS 50.0%
TTTGGGAGCCATGGCAAAGA+CGG + chr4_2:61490711-61490730 None:intergenic 50.0%
TGCCATGGCTCCCAAAAAGA+AGG - chr4_2:61490715-61490734 Msa0612950:CDS 50.0%
GACGCCGAATTCTTCAGCTT+TGG + chr4_2:61490969-61490988 None:intergenic 50.0%
GACAGAGAAGCCAAAACGGA+AGG + chr4_2:61491082-61491101 None:intergenic 50.0%
!! TCTGTCACTTCCGACGCTTT+TGG - chr4_2:61491096-61491115 Msa0612950:intron 50.0%
!! TTGCTGCTGCTCTTGGTGTT+GGG - chr4_2:61491185-61491204 Msa0612950:CDS 50.0%
TGAAGATGGAGAGCTGAGGC+TGG + chr4_2:61490617-61490636 None:intergenic 55.0%
GGAATGAGCGATAGTGACGG+AGG + chr4_2:61490664-61490683 None:intergenic 55.0%
GCCATGGCAAAGACGGTGAA+AGG + chr4_2:61490704-61490723 None:intergenic 55.0%
! TGCGGTCTCTCCTTCCGTTT+TGG - chr4_2:61491069-61491088 Msa0612950:intron 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG + chr4_2:61491109-61491128 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG - chr4_2:61491111-61491130 Msa0612950:intron 55.0%
GCTGTTGTTGCTGCTGCTCT+TGG - chr4_2:61491178-61491197 Msa0612950:CDS 55.0%
! GTTGCTGCTGCTCTTGGTGT+TGG - chr4_2:61491184-61491203 Msa0612950:CDS 55.0%
!! TGCTGCTGCTCTTGGTGTTG+GGG - chr4_2:61491186-61491205 Msa0612950:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG - chr4_2:61491194-61491213 Msa0612950:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG - chr4_2:61491223-61491242 Msa0612950:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG - chr4_2:61491224-61491243 Msa0612950:CDS 55.0%
TGAAGATGGAGAGCTGAGGC+TGG + chr4_2:61490617-61490636 None:intergenic 55.0%
GGAATGAGCGATAGTGACGG+AGG + chr4_2:61490664-61490683 None:intergenic 55.0%
GCCATGGCAAAGACGGTGAA+AGG + chr4_2:61490704-61490723 None:intergenic 55.0%
! TGCGGTCTCTCCTTCCGTTT+TGG - chr4_2:61491069-61491088 Msa0612950:intron 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG + chr4_2:61491109-61491128 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG - chr4_2:61491111-61491130 Msa0612950:intron 55.0%
GCTGTTGTTGCTGCTGCTCT+TGG - chr4_2:61491178-61491197 Msa0612950:CDS 55.0%
! GTTGCTGCTGCTCTTGGTGT+TGG - chr4_2:61491184-61491203 Msa0612950:CDS 55.0%
!! TGCTGCTGCTCTTGGTGTTG+GGG - chr4_2:61491186-61491205 Msa0612950:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG - chr4_2:61491194-61491213 Msa0612950:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG - chr4_2:61491223-61491242 Msa0612950:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG - chr4_2:61491224-61491243 Msa0612950:CDS 55.0%
! AGCGATAGTGACGGAGGGTG+CGG + chr4_2:61490658-61490677 None:intergenic 60.0%
TTTGGCTGCTGTTGCGACGG+TGG - chr4_2:61491114-61491133 Msa0612950:intron 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG - chr4_2:61491193-61491212 Msa0612950:CDS 60.0%
!! TGTTCTCGGCGGGTTGCAAG+AGG - chr4_2:61491234-61491253 Msa0612950:CDS 60.0%
! AGCGATAGTGACGGAGGGTG+CGG + chr4_2:61490658-61490677 None:intergenic 60.0%
TTTGGCTGCTGTTGCGACGG+TGG - chr4_2:61491114-61491133 Msa0612950:intron 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG - chr4_2:61491193-61491212 Msa0612950:CDS 60.0%
!! TGTTCTCGGCGGGTTGCAAG+AGG - chr4_2:61491234-61491253 Msa0612950:CDS 60.0%
GGCTGGAGCAGGAACAGCCA+TGG + chr4_2:61490600-61490619 None:intergenic 65.0%
TGGAGAGCTGAGGCTGGAGC+AGG + chr4_2:61490611-61490630 None:intergenic 65.0%
! GGAGGGTGCGGTGGTTAGTG+TGG + chr4_2:61490646-61490665 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG + chr4_2:61490655-61490674 None:intergenic 65.0%
! GGGGCTGTTGGGTTGTTCGC+TGG - chr4_2:61491205-61491224 Msa0612950:CDS 65.0%
GGCTGGAGCAGGAACAGCCA+TGG + chr4_2:61490600-61490619 None:intergenic 65.0%
TGGAGAGCTGAGGCTGGAGC+AGG + chr4_2:61490611-61490630 None:intergenic 65.0%
! GGAGGGTGCGGTGGTTAGTG+TGG + chr4_2:61490646-61490665 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG + chr4_2:61490655-61490674 None:intergenic 65.0%
! GGGGCTGTTGGGTTGTTCGC+TGG - chr4_2:61491205-61491224 Msa0612950:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 61490430 61491427 61490430 ID=Msa0612950;Name=Msa0612950
chr4_2 mRNA 61490430 61491427 61490430 ID=Msa0612950-mRNA-1;Parent=Msa0612950;Name=Msa0612950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=169|1|1|1|1|1|2|163|193
chr4_2 exon 61490430 61491036 61490430 ID=Msa0612950-mRNA-1:exon:16809;Parent=Msa0612950-mRNA-1
chr4_2 exon 61491121 61491427 61491121 ID=Msa0612950-mRNA-1:exon:16808;Parent=Msa0612950-mRNA-1
chr4_2 five_prime_UTR 61491259 61491427 61491259 ID=Msa0612950-mRNA-1:five_prime_utr;Parent=Msa0612950-mRNA-1
chr4_2 CDS 61491121 61491258 61491121 ID=Msa0612950-mRNA-1:cds;Parent=Msa0612950-mRNA-1
chr4_2 CDS 61490593 61491036 61490593 ID=Msa0612950-mRNA-1:cds;Parent=Msa0612950-mRNA-1
chr4_2 three_prime_UTR 61490430 61490592 61490430 ID=Msa0612950-mRNA-1:three_prime_utr;Parent=Msa0612950-mRNA-1
Gene Sequence

>Msa0612950

ATGGCTGTTCCTGCTCCAGCCTCAGCTCTCCATCTTCAACACATCCACACTAACCACCGCACCCTCCGTCACTATCGCTCATTCCCTACTTCCTCCAATAAACCTTTCACCGTCTTTGCCATGGCTCCCAAAAAGAAGGTGAACAAGTACAACGATAACTGGAAGAAACAATGGTTCGGAGCAGGAATATTCTACGAAGGAAGTGAAGAAGTAGAAGTGGACGTATTCAAGAAACTCGAGAAACGCAAAGTTTTAAGCAACGTTGAAAAAGCAGGATTATTATCCAAAGCTGAAGAATTCGGCGTCACGCTCTCTTCAATCGAGAAACTAGGACTTTTTTCTAAGGCGGAAGAACTTGGCTTACTCAGCTTATTAGAGAAACTCGCTGCGGTCTCTCCTTCCGTTTTGGCTTCTCTGTCACTTCCGACGCTTTTGGCTGCTGTTGCGACGGTGGTTCTTGTTCCTGATGATACTACAGCTCTTGTTGTAGTACAGGCTGTTGTTGCTGCTGCTCTTGGTGTTGGGGCTGTTGGGTTGTTCGCTGGATCTGTTGTTCTCGGCGGGTTGCAAGAGGCTGATTGA

Protein sequence

>Msa0612950

MAVPAPASALHLQHIHTNHRTLRHYRSFPTSSNKPFTVFAMAPKKKVNKYNDNWKKQWFGAGIFYEGSEEVEVDVFKKLEKRKVLSNVEKAGLLSKAEEFGVTLSSIEKLGLFSKAEELGLLSLLEKLAAVSPSVLASLSLPTLLAAVATVVLVPDDTTALVVVQAVVAAALGVGAVGLFAGSVVLGGLQEAD*