AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1076070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076070 MtrunA17_Chr7g0259891 95.105 286 7 3 1 282 1 283 0.0 517
Msa1076070 MtrunA17_Chr1g0151081 36.652 221 126 2 73 282 185 402 1.60e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076070 AT3G63170.1 55.396 278 120 2 1 278 1 274 5.99e-102 299
Msa1076070 AT2G26310.1 37.755 196 116 1 83 272 192 387 1.67e-34 129
Msa1076070 AT2G26310.5 37.755 196 116 1 83 272 192 387 1.67e-34 129
Msa1076070 AT2G26310.3 37.143 175 104 1 83 251 192 366 7.93e-27 107
Msa1076070 AT2G26310.2 33.673 196 99 2 83 272 192 362 8.90e-26 105
Msa1076070 AT2G26310.4 36.709 158 93 2 83 233 192 349 6.37e-22 94.4

Find 91 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAGGATTGAGGTGGTTT+TGG 0.135229 7_2:+74475652 None:intergenic
GTTAAGAACGAAAAGAATTT+TGG 0.155565 7_2:-74475374 Msa1076070:CDS
CAACAACTCCTTGCCTCTTT+GGG 0.168951 7_2:-74475500 Msa1076070:CDS
GGCTGCAGCGGCGGCGAATT+TGG 0.229679 7_2:+74475621 None:intergenic
AGATGTCTGTCTGAGAAATA+TGG 0.266325 7_2:-74475066 Msa1076070:CDS
AACATTGATGTATATGCTTT+TGG 0.274436 7_2:-74475343 Msa1076070:intron
GCAACAACTCCTTGCCTCTT+TGG 0.280639 7_2:-74475501 Msa1076070:CDS
TCTCAGAAACTCTGTGGAAT+TGG 0.281241 7_2:-74475397 Msa1076070:CDS
GCCGCTGCAGCCGCCACTGC+TGG 0.313309 7_2:-74475610 Msa1076070:CDS
AATGAGATATGAATAAATTC+AGG 0.340733 7_2:+74473031 None:intergenic
TCTTTAGCTTGTTTATCAAA+TGG 0.380206 7_2:+74473255 None:intergenic
CTCCTTGTTTCCCTTCAATT+CGG 0.388808 7_2:+74475029 None:intergenic
CCTCGCCAACGTATAAATCT+AGG 0.389464 7_2:+74473280 None:intergenic
AGCACAAGGGATGCATCAAC+AGG 0.396096 7_2:+74473076 None:intergenic
AAAGAGACGGTGGCGGTCAT+TGG 0.410130 7_2:+74475558 None:intergenic
AAAGTAAATCTTCTTTACTT+TGG 0.411042 7_2:+74472917 None:intergenic
CTCAGAAACTCTGTGGAATT+GGG 0.422840 7_2:-74475396 Msa1076070:CDS
CCTATTGTTGACTCGAGAAC+CGG 0.423269 7_2:-74475448 Msa1076070:CDS
ACGGAAGTTACGAAGTGTTT+CGG 0.427586 7_2:+74475718 None:intergenic
ACCAGCAGTGGCGGCTGCAG+CGG 0.431448 7_2:+74475609 None:intergenic
GGAGTTTAATGAGGATCTAC+TGG 0.431474 7_2:-74475010 Msa1076070:CDS
ACCTACACAGGAGTTTACTT+TGG 0.433749 7_2:+74473307 None:intergenic
TCTTTGGGGTTCTCTCAGTC+TGG 0.434966 7_2:-74475485 Msa1076070:CDS
ATGATATACATTTAACAGTA+AGG 0.442640 7_2:-74474984 Msa1076070:CDS
TGCAGTTGACGGACAGGAAG+TGG 0.444813 7_2:-74473337 Msa1076070:intron
AGCAGTGGCGGCTGCAGCGG+CGG 0.454039 7_2:+74475612 None:intergenic
CCGGTTCTCGAGTCAACAAT+AGG 0.456771 7_2:+74475448 None:intergenic
AAGAGGCAAGGAGTTGTTGC+TGG 0.461051 7_2:+74475504 None:intergenic
TTTCAGCAGTCTAACTTTGG+AGG 0.468287 7_2:+74473205 None:intergenic
AACAGAAGGGAACGAGGATC+CGG 0.468367 7_2:+74475429 None:intergenic
GTTACGAAGTGTTTCGGAGT+TGG 0.469859 7_2:+74475724 None:intergenic
GAGAAAGGGCGTGAGGATTG+AGG 0.476918 7_2:+74475643 None:intergenic
GCGGCGGCGAATTTGGAGAA+AGG 0.485576 7_2:+74475628 None:intergenic
AACAACTCCTTGCCTCTTTG+GGG 0.492409 7_2:-74475499 Msa1076070:CDS
GATGTCTGTCTGAGAAATAT+GGG 0.494327 7_2:-74475065 Msa1076070:CDS
AACTTTGGAGGTAAGAAGCC+AGG 0.495322 7_2:+74473217 None:intergenic
TCTCTCAGTCTGGCTGATAG+TGG 0.497372 7_2:-74475475 Msa1076070:CDS
TGCGGCGGTGGCACCAGCAG+TGG 0.498989 7_2:+74475597 None:intergenic
GGTTGTTGCAGTTGACGGAC+AGG 0.501877 7_2:-74473343 Msa1076070:intron
CGGAGTTGGAACATGGAGAC+TGG 0.504539 7_2:+74475738 None:intergenic
TTTGGGTTAGAAAATGTGAA+AGG 0.508855 7_2:+74475670 None:intergenic
GACGGCGATGAATGCGGCGG+TGG 0.511495 7_2:+74475585 None:intergenic
CGGCGGCGAATTTGGAGAAA+GGG 0.516843 7_2:+74475629 None:intergenic
GGCGGTGGCACCAGCAGTGG+CGG 0.517725 7_2:+74475600 None:intergenic
GAGACGGTGGCGGTCATTGG+AGG 0.519519 7_2:+74475561 None:intergenic
GGAAGTGAAGAAAGAGTTCA+AGG 0.519936 7_2:+74475525 None:intergenic
TGAGATGCTTCAAGAACAGA+AGG 0.526047 7_2:+74475415 None:intergenic
ATGAGATATGAATAAATTCA+GGG 0.526922 7_2:+74473032 None:intergenic
TTGTTTCCCTTCAATTCGGA+CGG 0.540407 7_2:+74475033 None:intergenic
AGTGCATTTGAAGAGTCTGT+TGG 0.545083 7_2:-74474919 Msa1076070:CDS
AGTGTTTCGGAGTTGGAACA+TGG 0.547591 7_2:+74475731 None:intergenic
AAAGAAGATTTACTTTGTCG+AGG 0.552528 7_2:-74472910 None:intergenic
AAGATGTTACGTTTATGAGT+GGG 0.552958 7_2:+74472944 None:intergenic
GTCCGAATTGAAGGGAAACA+AGG 0.569239 7_2:-74475031 Msa1076070:CDS
TTGGGTTAGAAAATGTGAAA+GGG 0.569537 7_2:+74475671 None:intergenic
TCAATCCTAGATTTATACGT+TGG 0.577790 7_2:-74473285 Msa1076070:CDS
CAAGATGTTACGTTTATGAG+TGG 0.581286 7_2:+74472943 None:intergenic
ATAATAAAGAATTGCTTCAG+AGG 0.585265 7_2:-74474867 Msa1076070:intron
GGGAAACAAGGAGTTTAATG+AGG 0.593911 7_2:-74475019 Msa1076070:CDS
CTAGAGGCATGGAATTAGCA+AGG 0.595016 7_2:+74473154 None:intergenic
AATTCATCTCACAAGAGAGA+AGG 0.595124 7_2:-74474422 Msa1076070:CDS
ATTCATCTCACAAGAGAGAA+GGG 0.595545 7_2:-74474421 Msa1076070:CDS
GAACAAAGTTACTAGAGGCA+TGG 0.595989 7_2:+74473143 None:intergenic
AATCTAGGATTGACCTACAC+AGG 0.602235 7_2:+74473295 None:intergenic
GATGTTACGTTTATGAGTGG+GGG 0.603466 7_2:+74472946 None:intergenic
GCAGTTGACGGACAGGAAGT+GGG 0.604670 7_2:-74473336 Msa1076070:intron
GAGAGAACCCCAAAGAGGCA+AGG 0.606859 7_2:+74475492 None:intergenic
GGAGGAGACGGCGATGAATG+CGG 0.608626 7_2:+74475579 None:intergenic
GTGGCGGTCATTGGAGGAGA+CGG 0.609813 7_2:+74475567 None:intergenic
AGATGTTACGTTTATGAGTG+GGG 0.611777 7_2:+74472945 None:intergenic
TTTGTAGAAAGAGACGGTGG+CGG 0.615662 7_2:+74475551 None:intergenic
CCTAGATTTATACGTTGGCG+AGG 0.617834 7_2:-74473280 Msa1076070:CDS
TTCTTGTCTCTTGAAGCACA+AGG 0.619784 7_2:+74473062 None:intergenic
ATTGAATCCATGTCCTACAA+AGG 0.620352 7_2:+74473177 None:intergenic
ATGAAATCAAAATACCTCGT+GGG 0.630447 7_2:-74474450 Msa1076070:CDS
AAAGGGCGTGAGGATTGAGG+TGG 0.632521 7_2:+74475646 None:intergenic
TACTTGTTGTGCGAAGAACA+TGG 0.634201 7_2:+74474398 None:intergenic
TCTTGTCTCTTGAAGCACAA+GGG 0.643717 7_2:+74473063 None:intergenic
GAATTTGGAGAAAGGGCGTG+AGG 0.655933 7_2:+74475636 None:intergenic
TTCAAGAACAGAAGGGAACG+AGG 0.656237 7_2:+74475423 None:intergenic
AGACTGAGAGAACCCCAAAG+AGG 0.657269 7_2:+74475487 None:intergenic
GATGAAATCAAAATACCTCG+TGG 0.663911 7_2:-74474451 Msa1076070:CDS
TCCAAAGTAAACTCCTGTGT+AGG 0.666013 7_2:-74473308 Msa1076070:CDS
AGAAGAAATAGAGCTCAACC+TGG 0.668098 7_2:-74473235 Msa1076070:CDS
GAAGCATCTCAGAAACTCTG+TGG 0.672841 7_2:-74475403 Msa1076070:CDS
GATTGAGCATTCGTTCTGTG+AGG 0.683191 7_2:-74474942 Msa1076070:CDS
GCACAAGGGATGCATCAACA+GGG 0.683819 7_2:+74473077 None:intergenic
GGAGACGGCGATGAATGCGG+CGG 0.700801 7_2:+74475582 None:intergenic
ATATTGAACAAAGTTACTAG+AGG 0.703138 7_2:+74473138 None:intergenic
GAGATGCTTCAAGAACAGAA+GGG 0.737233 7_2:+74475416 None:intergenic
AGATGAATTACAGACCCACG+AGG 0.819642 7_2:+74474436 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATAATTAGATAAAAA+AGG + chr7_2:74473407-74473426 None:intergenic 10.0%
!!! TTTTTATAATGTTTCTTATT+TGG - chr7_2:74473551-74473570 Msa1076070:intron 10.0%
!!! TTTTATAATGTTTCTTATTT+GGG - chr7_2:74473552-74473571 Msa1076070:intron 10.0%
!! TATAAATGAAATATTATTGT+GGG + chr7_2:74474604-74474623 None:intergenic 10.0%
!! ATATAAATGAAATATTATTG+TGG + chr7_2:74474605-74474624 None:intergenic 10.0%
!! TTAAAAAAAAAAAAAAAAGG+AGG + chr7_2:74474920-74474939 None:intergenic 10.0%
!!! TTGTTTTTTTTTTTTTTTTG+TGG + chr7_2:74475049-74475068 None:intergenic 10.0%
!! ATTAGATAAAAAAGGTAAAT+TGG + chr7_2:74473399-74473418 None:intergenic 15.0%
!! TGCTCATAAAAAAAAAAAAA+AGG + chr7_2:74474010-74474029 None:intergenic 15.0%
!! TATTTAATAATCAAATTGTC+AGG + chr7_2:74474802-74474821 None:intergenic 15.0%
!!! ATTTTAGTAATGTTGAAATA+TGG - chr7_2:74474838-74474857 Msa1076070:intron 15.0%
!!! TTTTAGTAATGTTGAAATAT+GGG - chr7_2:74474839-74474858 Msa1076070:intron 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG + chr7_2:74475046-74475065 None:intergenic 15.0%
!!! TTAAGAACGAAAAGAATTTT+GGG - chr7_2:74473319-74473338 Msa1076070:CDS 20.0%
!! ATTGGTAAAATAATTAGTTG+AGG + chr7_2:74473381-74473400 None:intergenic 20.0%
!!! AAAATTATGTTGTTTGTTGA+AGG - chr7_2:74473575-74473594 Msa1076070:intron 20.0%
!! ATGATATACATTTAACAGTA+AGG - chr7_2:74473708-74473727 Msa1076070:intron 20.0%
!! TTACAGTAAAAAAAAAGTAG+CGG + chr7_2:74474778-74474797 None:intergenic 20.0%
!! AAAAAAAAAAAAAGGAGGTA+AGG + chr7_2:74474915-74474934 None:intergenic 20.0%
!! ATGAGATATGAATAAATTCA+GGG + chr7_2:74475663-74475682 None:intergenic 20.0%
!! AATGAGATATGAATAAATTC+AGG + chr7_2:74475664-74475683 None:intergenic 20.0%
!! AAAGTAAATCTTCTTTACTT+TGG + chr7_2:74475778-74475797 None:intergenic 20.0%
!!! TAGTGATACCATTTTTGTTA+CGG + chr7_2:74472996-74473015 None:intergenic 25.0%
!! GTTAAGAACGAAAAGAATTT+TGG - chr7_2:74473318-74473337 Msa1076070:CDS 25.0%
!! AACATTGATGTATATGCTTT+TGG - chr7_2:74473349-74473368 Msa1076070:intron 25.0%
! ATAATAAAGAATTGCTTCAG+AGG - chr7_2:74473825-74473844 Msa1076070:intron 25.0%
!!! ACTTGAGTTATCTTTTTCAT+AGG - chr7_2:74473864-74473883 Msa1076070:intron 25.0%
! AAAATGGAAATGCAAATACA+GGG + chr7_2:74474330-74474349 None:intergenic 25.0%
!! AATTCTGAAAGTTGAGAAAA+TGG + chr7_2:74474346-74474365 None:intergenic 25.0%
!!! ATATCTTCCCCATTATTTTA+AGG - chr7_2:74474621-74474640 Msa1076070:intron 25.0%
! ACCCATTTCCTTAAAATAAT+GGG + chr7_2:74474632-74474651 None:intergenic 25.0%
!! CTTTGATGTTAATTTTGTCT+TGG - chr7_2:74475328-74475347 Msa1076070:intron 25.0%
!!! TCTTTAGCTTGTTTATCAAA+TGG + chr7_2:74475440-74475459 None:intergenic 25.0%
! ATATTGAACAAAGTTACTAG+AGG + chr7_2:74475557-74475576 None:intergenic 25.0%
! TTGGGTTAGAAAATGTGAAA+GGG + chr7_2:74473024-74473043 None:intergenic 30.0%
! TTTGGGTTAGAAAATGTGAA+AGG + chr7_2:74473025-74473044 None:intergenic 30.0%
! TATTTTACCAAGATTCTGCA+TGG - chr7_2:74473419-74473438 Msa1076070:intron 30.0%
TAGCTAACTGAATGAATTTG+CGG - chr7_2:74473459-74473478 Msa1076070:intron 30.0%
! TGAATTTTTCACAGTCAACA+TGG + chr7_2:74473529-74473548 None:intergenic 30.0%
GAAGAAAAAGATACCAACAA+AGG + chr7_2:74473978-74473997 None:intergenic 30.0%
AGCAGAAAAGATACAAACAA+AGG + chr7_2:74474034-74474053 None:intergenic 30.0%
! ACTTGGAATACAGTTTTCAA+TGG + chr7_2:74474110-74474129 None:intergenic 30.0%
ATGAAATCAAAATACCTCGT+GGG - chr7_2:74474242-74474261 Msa1076070:intron 30.0%
GAAAATGGAAATGCAAATAC+AGG + chr7_2:74474331-74474350 None:intergenic 30.0%
AATTCAAGTCCTCTAATCAT+TGG - chr7_2:74474429-74474448 Msa1076070:CDS 30.0%
!! TTCTGAAATCCAATGATTAG+AGG + chr7_2:74474441-74474460 None:intergenic 30.0%
!!! TCCCCATTATTTTAAGGAAA+TGG - chr7_2:74474627-74474646 Msa1076070:intron 30.0%
CCCATTTCCTTAAAATAATG+GGG + chr7_2:74474631-74474650 None:intergenic 30.0%
!!! CCCCATTATTTTAAGGAAAT+GGG - chr7_2:74474628-74474647 Msa1076070:intron 30.0%
CACCCATTTCCTTAAAATAA+TGG + chr7_2:74474633-74474652 None:intergenic 30.0%
!!! CATTATTTTAAGGAAATGGG+TGG - chr7_2:74474631-74474650 Msa1076070:intron 30.0%
! GGTTTAAGTGTTATTAGGTT+CGG + chr7_2:74474894-74474913 None:intergenic 30.0%
! GGTAAGGTTTAAGTGTTATT+AGG + chr7_2:74474899-74474918 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - chr7_2:74475001-74475020 Msa1076070:CDS 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG + chr7_2:74475041-74475060 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+TGG + chr7_2:74475042-74475061 None:intergenic 30.0%
TAAGTATCAAGTACCTTACA+CGG - chr7_2:74475094-74475113 Msa1076070:CDS 30.0%
AGTTAAACTTTCAACTCAGT+TGG - chr7_2:74475158-74475177 Msa1076070:intron 30.0%
!!! TTAGGTGTTTTAGTTGCTTT+TGG - chr7_2:74475266-74475285 Msa1076070:intron 30.0%
TCAATGCTAAATCACAACAA+GGG - chr7_2:74475304-74475323 Msa1076070:intron 30.0%
TCAATCCTAGATTTATACGT+TGG - chr7_2:74475407-74475426 Msa1076070:CDS 30.0%
!!! TTTTTTCAGCAGTCTAACTT+TGG + chr7_2:74475493-74475512 None:intergenic 30.0%
TGCTGAAAAAAATCCTTTGT+AGG - chr7_2:74475502-74475521 Msa1076070:CDS 30.0%
AAAAAATCCTTTGTAGGACA+TGG - chr7_2:74475508-74475527 Msa1076070:CDS 30.0%
AAGATGTTACGTTTATGAGT+GGG + chr7_2:74475751-74475770 None:intergenic 30.0%
CGTAACTTCCGTAACAAAAA+TGG - chr7_2:74472985-74473004 Msa1076070:three_prime_UTR 35.0%
! AGGCATTTTGTAGAAAGAGA+CGG + chr7_2:74473150-74473169 None:intergenic 35.0%
AGATGTCTGTCTGAGAAATA+TGG - chr7_2:74473626-74473645 Msa1076070:intron 35.0%
GATGTCTGTCTGAGAAATAT+GGG - chr7_2:74473627-74473646 Msa1076070:intron 35.0%
!! CACTTTAAGTTGTCCTTTGT+TGG - chr7_2:74473962-74473981 Msa1076070:intron 35.0%
TCGTGAGATGAATAAACACT+TGG + chr7_2:74474127-74474146 None:intergenic 35.0%
GATGAAATCAAAATACCTCG+TGG - chr7_2:74474241-74474260 Msa1076070:intron 35.0%
AATTCATCTCACAAGAGAGA+AGG - chr7_2:74474270-74474289 Msa1076070:intron 35.0%
ATTCATCTCACAAGAGAGAA+GGG - chr7_2:74474271-74474290 Msa1076070:intron 35.0%
! TAGTATTGAGTCTAACCGAA+AGG - chr7_2:74474514-74474533 Msa1076070:intron 35.0%
! AGTATTGAGTCTAACCGAAA+GGG - chr7_2:74474515-74474534 Msa1076070:intron 35.0%
! TTTGGAATGTGGTATATCAG+GGG + chr7_2:74474544-74474563 None:intergenic 35.0%
! GTTTGGAATGTGGTATATCA+GGG + chr7_2:74474545-74474564 None:intergenic 35.0%
! AGTTTGGAATGTGGTATATC+AGG + chr7_2:74474546-74474565 None:intergenic 35.0%
TGATATACCACATTCCAAAC+TGG - chr7_2:74474545-74474564 Msa1076070:intron 35.0%
TAAGATTCATGTAGCCAGTT+TGG + chr7_2:74474562-74474581 None:intergenic 35.0%
! TATACTCGCTCTTTTAAGCA+GGG + chr7_2:74474953-74474972 None:intergenic 35.0%
! TTATACTCGCTCTTTTAAGC+AGG + chr7_2:74474954-74474973 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr7_2:74475006-74475025 Msa1076070:CDS 35.0%
GCATAATATATGCAAGGTCT+GGG - chr7_2:74475007-74475026 Msa1076070:CDS 35.0%
CATAATATATGCAAGGTCTG+GGG - chr7_2:74475008-74475027 Msa1076070:CDS 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG + chr7_2:74475040-74475059 None:intergenic 35.0%
TGGTGATTTCAAATTCGAAC+TGG - chr7_2:74475178-74475197 Msa1076070:intron 35.0%
AACTAAAACACCTAATACCG+GGG + chr7_2:74475261-74475280 None:intergenic 35.0%
CAACTAAAACACCTAATACC+GGG + chr7_2:74475262-74475281 None:intergenic 35.0%
GCAACTAAAACACCTAATAC+CGG + chr7_2:74475263-74475282 None:intergenic 35.0%
GTCAATGCTAAATCACAACA+AGG - chr7_2:74475303-74475322 Msa1076070:intron 35.0%
ATTGAATCCATGTCCTACAA+AGG + chr7_2:74475518-74475537 None:intergenic 35.0%
AGATGTTACGTTTATGAGTG+GGG + chr7_2:74475750-74475769 None:intergenic 35.0%
CAAGATGTTACGTTTATGAG+TGG + chr7_2:74475752-74475771 None:intergenic 35.0%
! ACGGAAGTTACGAAGTGTTT+CGG + chr7_2:74472977-74472996 None:intergenic 40.0%
! CATTTTGTAGAAAGAGACGG+TGG + chr7_2:74473147-74473166 None:intergenic 40.0%
GGAAGTGAAGAAAGAGTTCA+AGG + chr7_2:74473170-74473189 None:intergenic 40.0%
GAGATGCTTCAAGAACAGAA+GGG + chr7_2:74473279-74473298 None:intergenic 40.0%
TGAGATGCTTCAAGAACAGA+AGG + chr7_2:74473280-74473299 None:intergenic 40.0%
TCTCAGAAACTCTGTGGAAT+TGG - chr7_2:74473295-74473314 Msa1076070:CDS 40.0%
CTCAGAAACTCTGTGGAATT+GGG - chr7_2:74473296-74473315 Msa1076070:CDS 40.0%
! ATTTTCTCCGTCCGAATTGA+AGG - chr7_2:74473652-74473671 Msa1076070:intron 40.0%
! TTTTCTCCGTCCGAATTGAA+GGG - chr7_2:74473653-74473672 Msa1076070:intron 40.0%
TTGTTTCCCTTCAATTCGGA+CGG + chr7_2:74473662-74473681 None:intergenic 40.0%
! CTCCTTGTTTCCCTTCAATT+CGG + chr7_2:74473666-74473685 None:intergenic 40.0%
GGGAAACAAGGAGTTTAATG+AGG - chr7_2:74473673-74473692 Msa1076070:intron 40.0%
GGAGTTTAATGAGGATCTAC+TGG - chr7_2:74473682-74473701 Msa1076070:intron 40.0%
AGTGCATTTGAAGAGTCTGT+TGG - chr7_2:74473773-74473792 Msa1076070:intron 40.0%
GGAAGCCGATTGCAAAAATA+CGG - chr7_2:74473794-74473813 Msa1076070:intron 40.0%
GAAGCCGATTGCAAAAATAC+GGG - chr7_2:74473795-74473814 Msa1076070:intron 40.0%
AAGCCGATTGCAAAAATACG+GGG - chr7_2:74473796-74473815 Msa1076070:intron 40.0%
!! AACCCCCGTATTTTTGCAAT+CGG + chr7_2:74473802-74473821 None:intergenic 40.0%
GAATTGCTTCAGAGGTGAAA+TGG - chr7_2:74473833-74473852 Msa1076070:intron 40.0%
CAACACGGAATTCACTCAAT+TGG + chr7_2:74474176-74474195 None:intergenic 40.0%
! CATGCTGGTTAACTACAACA+CGG + chr7_2:74474191-74474210 None:intergenic 40.0%
TAACCAGCATGCTTTGATGT+AGG - chr7_2:74474200-74474219 Msa1076070:intron 40.0%
AAACCTACATCAAAGCATGC+TGG + chr7_2:74474206-74474225 None:intergenic 40.0%
!! TACTTGTTGTGCGAAGAACA+TGG + chr7_2:74474297-74474316 None:intergenic 40.0%
TGGAAATGCAAATACAGGGA+AGG + chr7_2:74474326-74474345 None:intergenic 40.0%
CTACCAGTCTTGCCAAATAT+CGG - chr7_2:74474659-74474678 Msa1076070:intron 40.0%
!!! AGATTTTTTGACAGCAGCCA+TGG - chr7_2:74474700-74474719 Msa1076070:intron 40.0%
AATCCTTCACAAATTGGCCA+TGG + chr7_2:74474720-74474739 None:intergenic 40.0%
ATGGCCACCATATAATACCA+TGG + chr7_2:74474749-74474768 None:intergenic 40.0%
AAAAAAGTAGCGGCAGATCA+TGG + chr7_2:74474768-74474787 None:intergenic 40.0%
! ATACTCGCTCTTTTAAGCAG+GGG + chr7_2:74474952-74474971 None:intergenic 40.0%
!! GGGGCTCTAAAAATTTGCAT+GGG + chr7_2:74475241-74475260 None:intergenic 40.0%
!!! ATGCAAATTTTTAGAGCCCC+CGG - chr7_2:74475241-74475260 Msa1076070:intron 40.0%
ACTAAAACACCTAATACCGG+GGG + chr7_2:74475260-74475279 None:intergenic 40.0%
TCCAAAGTAAACTCCTGTGT+AGG - chr7_2:74475384-74475403 Msa1076070:CDS 40.0%
ACCTACACAGGAGTTTACTT+TGG + chr7_2:74475388-74475407 None:intergenic 40.0%
! AATCTAGGATTGACCTACAC+AGG + chr7_2:74475400-74475419 None:intergenic 40.0%
AGAAGAAATAGAGCTCAACC+TGG - chr7_2:74475457-74475476 Msa1076070:CDS 40.0%
TTTCAGCAGTCTAACTTTGG+AGG + chr7_2:74475490-74475509 None:intergenic 40.0%
GAACAAAGTTACTAGAGGCA+TGG + chr7_2:74475552-74475571 None:intergenic 40.0%
TCTTGTCTCTTGAAGCACAA+GGG + chr7_2:74475632-74475651 None:intergenic 40.0%
TTCTTGTCTCTTGAAGCACA+AGG + chr7_2:74475633-74475652 None:intergenic 40.0%
GATGTTACGTTTATGAGTGG+GGG + chr7_2:74475749-74475768 None:intergenic 40.0%
AGTGTTTCGGAGTTGGAACA+TGG + chr7_2:74472964-74472983 None:intergenic 45.0%
! GTTACGAAGTGTTTCGGAGT+TGG + chr7_2:74472971-74472990 None:intergenic 45.0%
! GTGAGGATTGAGGTGGTTTT+GGG + chr7_2:74473042-74473061 None:intergenic 45.0%
TTTGTAGAAAGAGACGGTGG+CGG + chr7_2:74473144-74473163 None:intergenic 45.0%
CAACAACTCCTTGCCTCTTT+GGG - chr7_2:74473192-74473211 Msa1076070:three_prime_UTR 45.0%
AACAACTCCTTGCCTCTTTG+GGG - chr7_2:74473193-74473212 Msa1076070:three_prime_UTR 45.0%
!! CCTATTGTTGACTCGAGAAC+CGG - chr7_2:74473244-74473263 Msa1076070:CDS 45.0%
TTCAAGAACAGAAGGGAACG+AGG + chr7_2:74473272-74473291 None:intergenic 45.0%
! GAAGCATCTCAGAAACTCTG+TGG - chr7_2:74473289-74473308 Msa1076070:CDS 45.0%
TTGCTTGCCATGCAGAATCT+TGG + chr7_2:74473429-74473448 None:intergenic 45.0%
GTCCGAATTGAAGGGAAACA+AGG - chr7_2:74473661-74473680 Msa1076070:intron 45.0%
GATTGAGCATTCGTTCTGTG+AGG - chr7_2:74473750-74473769 Msa1076070:intron 45.0%
AGCCGATTGCAAAAATACGG+GGG - chr7_2:74473797-74473816 Msa1076070:intron 45.0%
AGATGAATTACAGACCCACG+AGG + chr7_2:74474259-74474278 None:intergenic 45.0%
TATATCAGGGGACACCCTTT+CGG + chr7_2:74474532-74474551 None:intergenic 45.0%
! CATGTAGCCAGTTTGGAATG+TGG + chr7_2:74474555-74474574 None:intergenic 45.0%
TAGCCGATATTTGGCAAGAC+TGG + chr7_2:74474665-74474684 None:intergenic 45.0%
! GTCTTGCCAAATATCGGCTA+TGG - chr7_2:74474665-74474684 Msa1076070:intron 45.0%
! TTGCCAAATATCGGCTATGG+CGG - chr7_2:74474668-74474687 Msa1076070:intron 45.0%
GGCCAATTTGTGAAGGATTG+TGG - chr7_2:74474721-74474740 Msa1076070:intron 45.0%
CGCCACAATCCTTCACAAAT+TGG + chr7_2:74474726-74474745 None:intergenic 45.0%
TGTGGCGCCATGGTATTATA+TGG - chr7_2:74474739-74474758 Msa1076070:intron 45.0%
!! GCTCTTTTAAGCAGGGGTAT+AGG + chr7_2:74474946-74474965 None:intergenic 45.0%
AATTACACAAGAGAACCGCG+CGG + chr7_2:74475128-74475147 None:intergenic 45.0%
!! GGGGGCTCTAAAAATTTGCA+TGG + chr7_2:74475242-74475261 None:intergenic 45.0%
!!! TTTTTAGAGCCCCCGGTATT+AGG - chr7_2:74475248-74475267 Msa1076070:intron 45.0%
GTCTTGGTTGTTGCAGTTGA+CGG - chr7_2:74475344-74475363 Msa1076070:CDS 45.0%
CCTCGCCAACGTATAAATCT+AGG + chr7_2:74475415-74475434 None:intergenic 45.0%
CCTAGATTTATACGTTGGCG+AGG - chr7_2:74475412-74475431 Msa1076070:CDS 45.0%
! AACTTTGGAGGTAAGAAGCC+AGG + chr7_2:74475478-74475497 None:intergenic 45.0%
! CTAGAGGCATGGAATTAGCA+AGG + chr7_2:74475541-74475560 None:intergenic 45.0%
!! TTCTTAAAAAAAAAAAAAAA+AGG + chr7_2:74474923-74474942 None:intergenic 5.0%
! CGTGAGGATTGAGGTGGTTT+TGG + chr7_2:74473043-74473062 None:intergenic 50.0%
! GAATTTGGAGAAAGGGCGTG+AGG + chr7_2:74473059-74473078 None:intergenic 50.0%
AAGAGGCAAGGAGTTGTTGC+TGG + chr7_2:74473191-74473210 None:intergenic 50.0%
GCAACAACTCCTTGCCTCTT+TGG - chr7_2:74473191-74473210 Msa1076070:three_prime_UTR 50.0%
AGACTGAGAGAACCCCAAAG+AGG + chr7_2:74473208-74473227 None:intergenic 50.0%
!! TCTTTGGGGTTCTCTCAGTC+TGG - chr7_2:74473207-74473226 Msa1076070:exon 50.0%
TCTCTCAGTCTGGCTGATAG+TGG - chr7_2:74473217-74473236 Msa1076070:CDS 50.0%
CCGGTTCTCGAGTCAACAAT+AGG + chr7_2:74473247-74473266 None:intergenic 50.0%
AACAGAAGGGAACGAGGATC+CGG + chr7_2:74473266-74473285 None:intergenic 50.0%
CAGCCATGGCCAATTTGTGA+AGG - chr7_2:74474714-74474733 Msa1076070:intron 50.0%
GGCGCCATGGTATTATATGG+TGG - chr7_2:74474742-74474761 Msa1076070:intron 50.0%
GCACAAGGGATGCATCAACA+GGG + chr7_2:74475618-74475637 None:intergenic 50.0%
AGCACAAGGGATGCATCAAC+AGG + chr7_2:74475619-74475638 None:intergenic 50.0%
CGGAGTTGGAACATGGAGAC+TGG + chr7_2:74472957-74472976 None:intergenic 55.0%
! AAAGGGCGTGAGGATTGAGG+TGG + chr7_2:74473049-74473068 None:intergenic 55.0%
! GAGAAAGGGCGTGAGGATTG+AGG + chr7_2:74473052-74473071 None:intergenic 55.0%
CGGCGGCGAATTTGGAGAAA+GGG + chr7_2:74473066-74473085 None:intergenic 55.0%
! AAAGAGACGGTGGCGGTCAT+TGG + chr7_2:74473137-74473156 None:intergenic 55.0%
GAGAGAACCCCAAAGAGGCA+AGG + chr7_2:74473203-74473222 None:intergenic 55.0%
GCACCGCCATAGCCGATATT+TGG + chr7_2:74474674-74474693 None:intergenic 55.0%
! TATCGGCTATGGCGGTGCAA+CGG - chr7_2:74474676-74474695 Msa1076070:intron 55.0%
TGTGAAGGATTGTGGCGCCA+TGG - chr7_2:74474729-74474748 Msa1076070:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr7_2:74474979-74474998 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr7_2:74474976-74474995 Msa1076070:CDS 55.0%
CGTGAGCTTAGCTCAGTTGG+TGG - chr7_2:74474979-74474998 Msa1076070:CDS 55.0%
! CGCGGAGGTATAACCGTGTA+AGG + chr7_2:74475110-74475129 None:intergenic 55.0%
TACACGGTTATACCTCCGCG+CGG - chr7_2:74475110-74475129 Msa1076070:intron 55.0%
! GGTTGTTGCAGTTGACGGAC+AGG - chr7_2:74475349-74475368 Msa1076070:CDS 55.0%
! TGCAGTTGACGGACAGGAAG+TGG - chr7_2:74475355-74475374 Msa1076070:CDS 55.0%
! GCAGTTGACGGACAGGAAGT+GGG - chr7_2:74475356-74475375 Msa1076070:CDS 55.0%
GCGGCGGCGAATTTGGAGAA+AGG + chr7_2:74473067-74473086 None:intergenic 60.0%
GGAGGAGACGGCGATGAATG+CGG + chr7_2:74473116-74473135 None:intergenic 60.0%
GTGGCGGTCATTGGAGGAGA+CGG + chr7_2:74473128-74473147 None:intergenic 60.0%
TACACAAGAGAACCGCGCGG+AGG + chr7_2:74475125-74475144 None:intergenic 60.0%
GGAGACGGCGATGAATGCGG+CGG + chr7_2:74473113-74473132 None:intergenic 65.0%
! GAGACGGTGGCGGTCATTGG+AGG + chr7_2:74473134-74473153 None:intergenic 65.0%
GGCTGCAGCGGCGGCGAATT+TGG + chr7_2:74473074-74473093 None:intergenic 70.0%
ACCAGCAGTGGCGGCTGCAG+CGG + chr7_2:74473086-74473105 None:intergenic 70.0%
GACGGCGATGAATGCGGCGG+TGG + chr7_2:74473110-74473129 None:intergenic 70.0%
AGCAGTGGCGGCTGCAGCGG+CGG + chr7_2:74473083-74473102 None:intergenic 75.0%
GGCGGTGGCACCAGCAGTGG+CGG + chr7_2:74473095-74473114 None:intergenic 75.0%
TGCGGCGGTGGCACCAGCAG+TGG + chr7_2:74473098-74473117 None:intergenic 75.0%
! GCCGCTGCAGCCGCCACTGC+TGG - chr7_2:74473082-74473101 Msa1076070:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 74472911 74475803 74472911 ID=Msa1076070;Name=Msa1076070
chr7_2 mRNA 74472911 74475803 74472911 ID=Msa1076070-mRNA-1;Parent=Msa1076070;Name=Msa1076070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=93|1|1|1|1|1|4|304|282
chr7_2 exon 74472911 74473354 74472911 ID=Msa1076070-mRNA-1:exon:17556;Parent=Msa1076070-mRNA-1
chr7_2 exon 74474401 74474492 74474401 ID=Msa1076070-mRNA-1:exon:17555;Parent=Msa1076070-mRNA-1
chr7_2 exon 74474868 74475117 74474868 ID=Msa1076070-mRNA-1:exon:17554;Parent=Msa1076070-mRNA-1
chr7_2 exon 74475344 74475803 74475344 ID=Msa1076070-mRNA-1:exon:17553;Parent=Msa1076070-mRNA-1
chr7_2 five_prime_UTR 74475711 74475803 74475711 ID=Msa1076070-mRNA-1:five_prime_utr;Parent=Msa1076070-mRNA-1
chr7_2 CDS 74475344 74475710 74475344 ID=Msa1076070-mRNA-1:cds;Parent=Msa1076070-mRNA-1
chr7_2 CDS 74474868 74475117 74474868 ID=Msa1076070-mRNA-1:cds;Parent=Msa1076070-mRNA-1
chr7_2 CDS 74474401 74474492 74474401 ID=Msa1076070-mRNA-1:cds;Parent=Msa1076070-mRNA-1
chr7_2 CDS 74473215 74473354 74473215 ID=Msa1076070-mRNA-1:cds;Parent=Msa1076070-mRNA-1
chr7_2 three_prime_UTR 74472911 74473214 74472911 ID=Msa1076070-mRNA-1:three_prime_utr;Parent=Msa1076070-mRNA-1
Gene Sequence

>Msa1076070

ATGGTATCACTACGCTTCCCTTTCACATTTTCTAACCCAAAACCACCTCAATCCTCACGCCCTTTCTCCAAATTCGCCGCCGCTGCAGCCGCCACTGCTGGTGCCACCGCCGCATTCATCGCCGTCTCCTCCAATGACCGCCACCGTCTCTTTCTACAAAATGCCTTGAACTCTTTCTTCACTTCCAGCAACAACTCCTTGCCTCTTTGGGGTTCTCTCAGTCTGGCTGATAGTGGTGTTCCTATTGTTGACTCGAGAACCGGATCCTCGTTCCCTTCTGTTCTTGAAGCATCTCAGAAACTCTGTGGAATTGGGTTAAGAACGAAAAGAATTTTGGGTTTGAAGAACATTGATGTATATGCTTTTGGTGTTTATGCTGACGATGATGACGTAAAGAGATGTCTGTCTGAGAAATATGGGAAATTTTCTCCGTCCGAATTGAAGGGAAACAAGGAGTTTAATGAGGATCTACTGGAAAATGATATACATTTAACAGTAAGGCTTCAAATTGTTTATAGTAGATTGAGCATTCGTTCTGTGAGGAGTGCATTTGAAGAGTCTGTTGGAAGCCGATTGCAAAAATACGGGGGTTCAGATAATAAAGAATTGCTTCAGAGGTTTACTTCACAGTTTAGAGATGAAATCAAAATACCTCGTGGGTCTGTAATTCATCTCACAAGAGAGAAGGGCCATGTTCTTCGCACAACAATTGACGGACAGGAAGTGGGAAGCATCCAAAGTAAACTCCTGTGTAGGTCAATCCTAGATTTATACGTTGGCGAGGAACCATTTGATAAACAAGCTAAAGAAGAAATAGAGCTCAACCTGGCTTCTTACCTCCAAAGTTAG

Protein sequence

>Msa1076070

MVSLRFPFTFSNPKPPQSSRPFSKFAAAAAATAGATAAFIAVSSNDRHRLFLQNALNSFFTSSNNSLPLWGSLSLADSGVPIVDSRTGSSFPSVLEASQKLCGIGLRTKRILGLKNIDVYAFGVYADDDDVKRCLSEKYGKFSPSELKGNKEFNEDLLENDIHLTVRLQIVYSRLSIRSVRSAFEESVGSRLQKYGGSDNKELLQRFTSQFRDEIKIPRGSVIHLTREKGHVLRTTIDGQEVGSIQSKLLCRSILDLYVGEEPFDKQAKEEIELNLASYLQS*