AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1144470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144470 MtrunA17_Chr4g0035691 96.911 259 8 0 222 480 19 277 0.0 514
Msa1144470 MtrunA17_Chr4g0035681 89.177 231 19 4 1 227 1 229 1.23e-141 405
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144470 AT2G21370.1 72.104 423 118 0 56 478 53 475 0.0 647
Msa1144470 AT2G21370.2 73.947 380 99 0 99 478 3 382 0.0 595
Msa1144470 AT2G21370.4 72.905 358 97 0 56 413 53 410 0.0 555
Msa1144470 AT2G21370.3 75.238 315 78 0 99 413 3 317 1.39e-178 503

Find 123 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATACTTGCATGGAATTT+TGG 0.172318 7_4:+20552992 Msa1144470:CDS
CTTATTAACTACAATTAATT+AGG 0.186545 7_4:+20554023 Msa1144470:three_prime_UTR
GCGCAGAATGTTCCTGAAAA+TGG 0.227014 7_4:+20548744 None:intergenic
AACTCCAATTGCTTGTTTAA+AGG 0.241909 7_4:+20550254 Msa1144470:CDS
AGAGACATTGATACTGTTCT+TGG 0.256310 7_4:-20549034 None:intergenic
GAGGAACTTAGAAATAAATT+TGG 0.271597 7_4:+20550276 Msa1144470:CDS
CCTGAAGTTCCCTTATCCTT+TGG 0.278580 7_4:+20548810 Msa1144470:five_prime_UTR
GAATCGAGGATTCTCGGTTT+GGG 0.311784 7_4:+20551379 Msa1144470:CDS
TGATTCTTAGGTTACATCAT+TGG 0.316523 7_4:+20551320 Msa1144470:intron
GGGTTGGACTTTGGCACTTC+CGG 0.317976 7_4:+20549112 Msa1144470:CDS
CTGAAGTTCCCTTATCCTTT+GGG 0.319442 7_4:+20548811 Msa1144470:five_prime_UTR
AAACAAGCAATTGGAGTTCC+AGG 0.322393 7_4:-20550249 None:intergenic
GTCATCGCCTTGATGATAAA+TGG 0.338306 7_4:+20551409 Msa1144470:CDS
CAGTACCTTGGAGCCAAATC+TGG 0.341368 7_4:-20551591 None:intergenic
GTTGGTGGTGCTTCAAATAC+TGG 0.348663 7_4:+20551435 Msa1144470:CDS
GGAAATCTTTCACCAGCTTT+TGG 0.354679 7_4:-20551558 None:intergenic
TCTTATCTTCCCAAAGGATA+AGG 0.357228 7_4:-20548820 None:intergenic
GATTCTTAGGTTACATCATT+GGG 0.360067 7_4:+20551321 Msa1144470:intron
ATTGTGTCGATTTCTATTGA+TGG 0.365963 7_4:+20549473 Msa1144470:CDS
TCCTCCTTTAAACAAGCAAT+TGG 0.368678 7_4:-20550258 None:intergenic
TCCGGTTGCAGATCCAGATT+TGG 0.369397 7_4:+20551578 Msa1144470:CDS
ATATGTGAAAGATGTTAAAA+TGG 0.372712 7_4:-20548882 None:intergenic
GACGGTAAAAGATGAGAATA+TGG 0.373140 7_4:-20550216 None:intergenic
TGGCAGAGGATAGTAGTCTA+AGG 0.378260 7_4:-20551538 None:intergenic
CTTATCTTCCCAAAGGATAA+GGG 0.378527 7_4:-20548819 None:intergenic
AAAAGCTGGTGAAAGATTTC+CGG 0.379132 7_4:+20551560 Msa1144470:CDS
CCAAAGGATAAGGGAACTTC+AGG 0.380729 7_4:-20548810 None:intergenic
CCTTTGGGAAGATAAGAAAA+TGG 0.381391 7_4:+20548826 Msa1144470:exon
GATGGATATGAGTCCACTTC+AGG 0.389322 7_4:-20550177 None:intergenic
AGAATCGAGGATTCTCGGTT+TGG 0.392673 7_4:+20551378 Msa1144470:CDS
TGGCTTCTTCATGGAAAGCT+TGG 0.398484 7_4:+20550002 Msa1144470:CDS
TGCATACGGAACTGCATTGT+TGG 0.411658 7_4:+20553843 Msa1144470:CDS
AGCTATACTGTCAGTGGTTC+CGG 0.412191 7_4:-20550855 None:intergenic
CGCAGAATGTTCCTGAAAAT+GGG 0.417963 7_4:+20548745 None:intergenic
GATGTTAAAATGGTGCTTGC+TGG 0.419025 7_4:-20548872 None:intergenic
TTCCGTATGCAGCTTCTGTT+TGG 0.420105 7_4:-20553831 None:intergenic
TAGTTAATAAGTAGTTAAGT+TGG 0.421232 7_4:-20554011 None:intergenic
GGAATCCATTGCACGTATAG+AGG 0.422783 7_4:+20553013 Msa1144470:CDS
GGAAACAGGTTATTACTGTT+AGG 0.425830 7_4:+20549004 Msa1144470:intron
TTACCGTCCGTTCTTGCACC+TGG 0.429144 7_4:+20550231 Msa1144470:CDS
TGGTGGTAAAGTTGCGGACT+GGG 0.429675 7_4:-20548782 None:intergenic
GCAGAGCATACTGTATGGTT+TGG 0.432761 7_4:-20549885 None:intergenic
AACTGCATTGTTGGCAATGA+AGG 0.435765 7_4:+20553852 Msa1144470:CDS
CTTGATGATAAATGGCTTGT+TGG 0.440900 7_4:+20551417 Msa1144470:CDS
TTTACAGCAGGTAGTGCATC+AGG 0.446244 7_4:-20549849 None:intergenic
GAAAATGATACCGAGTATAG+TGG 0.453765 7_4:-20549196 None:intergenic
ACTCAAGAATCGAGGATTCT+CGG 0.455333 7_4:+20551373 Msa1144470:CDS
CTGTATCTCGGGTTGGACTT+TGG 0.462776 7_4:+20549103 Msa1144470:CDS
TGTTATTGCACCAAGCAGAT+TGG 0.463073 7_4:+20549973 Msa1144470:CDS
GCCAAATCTGGATCTGCAAC+CGG 0.465717 7_4:-20551579 None:intergenic
GAATGGAGAGTCACATGATT+GGG 0.467158 7_4:+20549385 Msa1144470:intron
ATCTATTAGATACGATATCT+AGG 0.480531 7_4:-20553955 None:intergenic
TATGGGTTGCTAAAGGATCT+AGG 0.488772 7_4:+20553703 Msa1144470:CDS
GCCACAAAAGCCAATCTGCT+TGG 0.490266 7_4:-20549983 None:intergenic
CAGGTGAAAGGCTGTATCTC+GGG 0.490454 7_4:+20549092 Msa1144470:CDS
AGAATGGAGAGTCACATGAT+TGG 0.492505 7_4:+20549384 Msa1144470:intron
CAACTCTCATTGTAAAGTAA+AGG 0.495280 7_4:-20549825 None:intergenic
TGATGCATTTGCCCTTAAGT+TGG 0.497875 7_4:-20553898 None:intergenic
ATGTGTTTGCGAAGGTTAAG+TGG 0.500385 7_4:-20549452 None:intergenic
TACTATCCTCTGCCAAAAGC+TGG 0.504038 7_4:+20551546 Msa1144470:CDS
GATGATAAATGGCTTGTTGG+TGG 0.509846 7_4:+20551420 Msa1144470:CDS
TTCACATATAGTCGAAAACT+TGG 0.512881 7_4:+20548896 Msa1144470:CDS
TGATACCGAGTATAGTGGAT+AGG 0.519047 7_4:-20549191 None:intergenic
GCAGGTGAAAGGCTGTATCT+CGG 0.519687 7_4:+20549091 Msa1144470:CDS
GTTTGGTTTGCACGACTCAC+AGG 0.521003 7_4:-20553814 None:intergenic
TCTTACCTCTATACGTGCAA+TGG 0.527339 7_4:-20553018 None:intergenic
TTTGCTATCATTGACATTGG+TGG 0.527618 7_4:+20549142 Msa1144470:CDS
TAAAATGGTGCTTGCTGGGT+GGG 0.528829 7_4:-20548867 None:intergenic
TCCAATTGCTTGTTTAAAGG+AGG 0.535092 7_4:+20550257 Msa1144470:CDS
ATGGTGGTAAAGTTGCGGAC+TGG 0.535458 7_4:-20548783 None:intergenic
AAGATACGAGAAAGGGTGCT+TGG 0.539627 7_4:+20553787 Msa1144470:CDS
AGATTATAATAATGCTCTGA+AGG 0.544841 7_4:+20550031 Msa1144470:CDS
GCAGCTCGTGCTACTCAACC+TGG 0.545958 7_4:+20550887 Msa1144470:CDS
TGGAGTTCCAGGTGCAAGAA+CGG 0.546664 7_4:-20550238 None:intergenic
GGTTGAGAGACTAGCCATGA+TGG 0.547884 7_4:-20550195 None:intergenic
CAACTACTATCATTGTTGCT+AGG 0.550256 7_4:+20549504 Msa1144470:CDS
GATACCGAGTATAGTGGATA+GGG 0.550490 7_4:-20549190 None:intergenic
CAGTTTCTCTAGTTGATCAT+CGG 0.550710 7_4:-20551484 None:intergenic
AAAGGGATATGGGTTGCTAA+AGG 0.551626 7_4:+20553696 Msa1144470:CDS
CAACAAGCCATTTATCATCA+AGG 0.552580 7_4:-20551416 None:intergenic
AGTGGACAAAGATACGAGAA+AGG 0.554823 7_4:+20553779 Msa1144470:CDS
TGGATAGGGTCGCTTTGCCT+CGG 0.555768 7_4:-20549176 None:intergenic
ATGTTAAAATGGTGCTTGCT+GGG 0.557496 7_4:-20548871 None:intergenic
CAGATCCAGATTTGGCTCCA+AGG 0.557605 7_4:+20551586 Msa1144470:CDS
CACATGATTGGGTACGCTCG+TGG 0.559882 7_4:+20549396 Msa1144470:CDS
AATGATGTTGAATACTTGCA+TGG 0.562603 7_4:+20552984 Msa1144470:CDS
AATCGAGGATTCTCGGTTTG+GGG 0.569766 7_4:+20551380 Msa1144470:CDS
AAGTGGACTCATATCCATCA+TGG 0.572768 7_4:+20550181 Msa1144470:CDS
AAGGAGTGTGTTGTATGCAC+CGG 0.573060 7_4:+20550836 Msa1144470:CDS
TGAAAGGCTGTATCTCGGGT+TGG 0.578609 7_4:+20549096 Msa1144470:CDS
CTCTGTGTAAGCTCGTGTCA+TGG 0.583558 7_4:+20549916 Msa1144470:CDS
TGGGAAGATAAGAAAATGGT+AGG 0.584118 7_4:+20548830 Msa1144470:exon
GAGCATACTGTATGGTTTGG+AGG 0.585331 7_4:-20549882 None:intergenic
AGATTTGCTATCATTGACAT+TGG 0.585612 7_4:+20549139 Msa1144470:CDS
AACCAAACAGAAGCTGCATA+CGG 0.586418 7_4:+20553829 Msa1144470:CDS
TGTGTTTGCGAAGGTTAAGT+GGG 0.587553 7_4:-20549451 None:intergenic
TGTATGGTTTGGAGGTGCAA+TGG 0.588665 7_4:-20549874 None:intergenic
GTAGTGTGGGAGCAGGTGAA+AGG 0.597368 7_4:+20549080 Msa1144470:CDS
GTCTAAGGAAGATATTTGTG+AGG 0.598899 7_4:-20551523 None:intergenic
TTAAAATGGTGCTTGCTGGG+TGG 0.598985 7_4:-20548868 None:intergenic
ACGATGCAGAGCATACTGTA+TGG 0.600239 7_4:-20549890 None:intergenic
AATGATAGCAAATCTTGCAC+CGG 0.609625 7_4:-20549131 None:intergenic
ATGTTGTACTGCAGTGACAC+AGG 0.614244 7_4:+20549786 Msa1144470:intron
TGTGAAAACTTGATCCACTA+CGG 0.615420 7_4:-20553731 None:intergenic
TCTAAGGAAGATATTTGTGA+GGG 0.615510 7_4:-20551522 None:intergenic
TCGACACAATGTGTTTGCGA+AGG 0.617735 7_4:-20549460 None:intergenic
GGATCTAGGTGCAACCGTAG+TGG 0.620019 7_4:+20553717 Msa1144470:CDS
GAACAATGGTGGTAAAGTTG+CGG 0.627822 7_4:-20548788 None:intergenic
AAACGCAGCTATACTGTCAG+TGG 0.632976 7_4:-20550861 None:intergenic
TAAGGGAACTTCAGGAACAA+TGG 0.633568 7_4:-20548802 None:intergenic
GTGACACAGGAGAACCGTTG+TGG 0.635099 7_4:+20549799 Msa1144470:intron
GCGACCCTATCCACTATACT+CGG 0.636506 7_4:+20549186 Msa1144470:CDS
GTGTCATGGTGGAATCGTGA+TGG 0.637856 7_4:+20549930 Msa1144470:CDS
ACTGCATTGTTGGCAATGAA+GGG 0.646066 7_4:+20553853 Msa1144470:CDS
TGGTGGCACAATTCAAGCCG+AGG 0.648456 7_4:+20549159 Msa1144470:CDS
GTGGACAAAGATACGAGAAA+GGG 0.650371 7_4:+20553780 Msa1144470:CDS
GTTCCAGGTGCAAGAACGGA+CGG 0.651034 7_4:-20550234 None:intergenic
ATTAAGCAACTCAAGAATCG+AGG 0.655962 7_4:+20551365 Msa1144470:CDS
GGGAACTTCAGGAACAATGG+TGG 0.667525 7_4:-20548799 None:intergenic
GGTTGGGTATGATCCTGAAG+TGG 0.669877 7_4:+20550164 Msa1144470:intron
TAAAGTAAAGGTCTCCACAA+CGG 0.675201 7_4:-20549813 None:intergenic
TGTGTAAGCTCGTGTCATGG+TGG 0.682794 7_4:+20549919 Msa1144470:CDS
GGTGGTGCTTCAAATACTGG+AGG 0.715567 7_4:+20551438 Msa1144470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAGATTTATTTTAATA+CGG + chr7_4:20551887-20551906 Msa1144470:intron 10.0%
!! CATGAATAAATAATTAAAGA+AGG - chr7_4:20550941-20550960 None:intergenic 15.0%
!!! AAATTAAGATTTTCAAAAGA+TGG + chr7_4:20550984-20551003 Msa1144470:intron 15.0%
!!! AGAGCATTTAAATTATATTT+TGG - chr7_4:20551142-20551161 None:intergenic 15.0%
!! TATACAAGCTAATATTATAA+CGG - chr7_4:20551669-20551688 None:intergenic 15.0%
!! TTTATAAAATTAACTCACTT+GGG + chr7_4:20551695-20551714 Msa1144470:intron 15.0%
!!! ATCTAGATTTATTTTAATAC+GGG + chr7_4:20551888-20551907 Msa1144470:intron 15.0%
!! AATAAAAAACTATTATTGAC+AGG - chr7_4:20551934-20551953 None:intergenic 15.0%
!!! AATAGTATTCTAAAAACAAA+AGG - chr7_4:20551957-20551976 None:intergenic 15.0%
!! ATTAAATCTGATTCTTTATA+TGG - chr7_4:20552786-20552805 None:intergenic 15.0%
!!! AATTTTACTTCATATAATGA+TGG - chr7_4:20553068-20553087 None:intergenic 15.0%
!! CTTATTAACTACAATTAATT+AGG + chr7_4:20554023-20554042 Msa1144470:three_prime_UTR 15.0%
!! ATATGTGAAAGATGTTAAAA+TGG - chr7_4:20548885-20548904 None:intergenic 20.0%
!!! TAATGTGATTGAGAATATTT+TGG + chr7_4:20549264-20549283 Msa1144470:intron 20.0%
!! AGTACAAAATATTGTCAAAT+TGG + chr7_4:20549639-20549658 Msa1144470:intron 20.0%
!! GTACAAAATATTGTCAAATT+GGG + chr7_4:20549640-20549659 Msa1144470:intron 20.0%
!! TACAAAATATTGTCAAATTG+GGG + chr7_4:20549641-20549660 Msa1144470:intron 20.0%
!!! TATTATCTATTTTTCTAGCT+AGG + chr7_4:20550076-20550095 Msa1144470:intron 20.0%
!! TGCAAAACATAAAAAAATTG+TGG - chr7_4:20550144-20550163 None:intergenic 20.0%
!!! ACAATTTTTTTATGTTTTGC+AGG + chr7_4:20550143-20550162 Msa1144470:intron 20.0%
!! TAAAAAGTTTATATGTGAGT+TGG - chr7_4:20550463-20550482 None:intergenic 20.0%
!! GAAATTGAAAATCATATACA+CGG + chr7_4:20550790-20550809 Msa1144470:intron 20.0%
!! TTATTTATTCATGATCTGTT+AGG + chr7_4:20550948-20550967 Msa1144470:intron 20.0%
!! ATCTTATTATAAATACAGTG+TGG - chr7_4:20551046-20551065 None:intergenic 20.0%
!! ACTGTATTTATAATAAGATC+AGG + chr7_4:20551047-20551066 Msa1144470:intron 20.0%
!! AATATAATTTAAATGCTCTG+TGG + chr7_4:20551143-20551162 Msa1144470:intron 20.0%
!! CTTATTAATTCAAAACCTTA+AGG + chr7_4:20551230-20551249 Msa1144470:intron 20.0%
!!! GTGAGTTAATTTTATAAAGA+AGG - chr7_4:20551693-20551712 None:intergenic 20.0%
!! CTTTATAAAATTAACTCACT+TGG + chr7_4:20551694-20551713 Msa1144470:intron 20.0%
!!! TTAGAATACTATTTTTTCTC+CGG + chr7_4:20551964-20551983 Msa1144470:intron 20.0%
!! TTGTAGATTTAATGAAATAC+CGG - chr7_4:20551986-20552005 None:intergenic 20.0%
!!! CTACTACTATTTTAGAATTT+AGG + chr7_4:20552185-20552204 Msa1144470:intron 20.0%
!! AATAAATATACTCCAATGTA+AGG - chr7_4:20552569-20552588 None:intergenic 20.0%
!! TACATTGGAGTATATTTATT+AGG + chr7_4:20552569-20552588 Msa1144470:intron 20.0%
!!! ATTTATTAGGAGCTTTAAAA+AGG + chr7_4:20552519-20552538 Msa1144470:intron 20.0%
!!! TATTTCCTTTTCTTTCTAAA+AGG - chr7_4:20552666-20552685 None:intergenic 20.0%
!! TAAAGAATCAGATTTAATGT+TGG + chr7_4:20552788-20552807 Msa1144470:intron 20.0%
!!! TTATTTTGCATAATGACTAA+TGG + chr7_4:20552923-20552942 Msa1144470:intron 20.0%
!! TCCAATAAAGTTTATGAAAA+TGG - chr7_4:20553289-20553308 None:intergenic 20.0%
!!! TGAGTTGAACAATAAATTTA+AGG - chr7_4:20553474-20553493 None:intergenic 20.0%
!! CTGTAAAAAAAAAAATGAGT+TGG - chr7_4:20553583-20553602 None:intergenic 20.0%
!!! TATTTTGCTCTTACATTTTT+TGG + chr7_4:20553614-20553633 Msa1144470:intron 20.0%
!! AGTAGTAATAAAAATTAGGA+TGG + chr7_4:20553928-20553947 Msa1144470:three_prime_UTR 20.0%
!! TAGTTAATAAGTAGTTAAGT+TGG - chr7_4:20554014-20554033 None:intergenic 20.0%
!! AAAAATGGTGTCAAAATAAG+TGG - chr7_4:20548958-20548977 None:intergenic 25.0%
!! GTAGCATGAAAGTATAAAAA+TGG - chr7_4:20548973-20548992 None:intergenic 25.0%
! AGATAACAAAAAAAGTAGTG+TGG + chr7_4:20549066-20549085 Msa1144470:CDS 25.0%
! GATAACAAAAAAAGTAGTGT+GGG + chr7_4:20549067-20549086 Msa1144470:CDS 25.0%
!!! TTGACAATGTTCTAAAATTG+TGG + chr7_4:20549302-20549321 Msa1144470:intron 25.0%
!! ATTGTATTTGAATTCTGAAG+TGG + chr7_4:20549761-20549780 Msa1144470:intron 25.0%
!!! TTGTATTTGAATTCTGAAGT+GGG + chr7_4:20549762-20549781 Msa1144470:intron 25.0%
! AGATTATAATAATGCTCTGA+AGG + chr7_4:20550031-20550050 Msa1144470:CDS 25.0%
!!! TTTTTTTATGTTTTGCAGGT+TGG + chr7_4:20550147-20550166 Msa1144470:intron 25.0%
!!! TTTTTTATGTTTTGCAGGTT+GGG + chr7_4:20550148-20550167 Msa1144470:intron 25.0%
! GAGGAACTTAGAAATAAATT+TGG + chr7_4:20550276-20550295 Msa1144470:CDS 25.0%
! AAGCATTATCCCTATAAAAT+GGG - chr7_4:20550532-20550551 None:intergenic 25.0%
! TAAGCATTATCCCTATAAAA+TGG - chr7_4:20550533-20550552 None:intergenic 25.0%
! AGGGATAATGCTTATTAATA+TGG + chr7_4:20550539-20550558 Msa1144470:intron 25.0%
! GAAAGAAGAATATTGAGATA+AGG - chr7_4:20550596-20550615 None:intergenic 25.0%
! TCTCAATATTCTTCTTTCTT+TGG + chr7_4:20550598-20550617 Msa1144470:intron 25.0%
!!! CAAAGATTTTAACCAAGTTA+AGG - chr7_4:20550763-20550782 None:intergenic 25.0%
! CCATAGCAATCATATATATT+AGG - chr7_4:20551085-20551104 None:intergenic 25.0%
! CCTAATATATATGATTGCTA+TGG + chr7_4:20551082-20551101 Msa1144470:intron 25.0%
!!! AAATTATATTTTGGTAGACC+AGG - chr7_4:20551133-20551152 None:intergenic 25.0%
! ACATTATGAGAAACAAAACA+AGG - chr7_4:20551299-20551318 None:intergenic 25.0%
! TCTCATAATGTTTGATTCTT+AGG + chr7_4:20551308-20551327 Msa1144470:intron 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG - chr7_4:20551862-20551881 None:intergenic 25.0%
! ATCTACAAATCATCATGTTA+AGG + chr7_4:20551998-20552017 Msa1144470:intron 25.0%
! CAAAATTCTAAACTAAGCAT+TGG - chr7_4:20552111-20552130 None:intergenic 25.0%
!!! CAATGCTTAGTTTAGAATTT+TGG + chr7_4:20552109-20552128 Msa1144470:intron 25.0%
! CAAGAACAAACTTGAATATA+CGG - chr7_4:20552341-20552360 None:intergenic 25.0%
! AGTATTTCTTAACTACCTAA+CGG - chr7_4:20552469-20552488 None:intergenic 25.0%
! GATATCTTCAACAAAAGAAA+AGG + chr7_4:20552491-20552510 Msa1144470:intron 25.0%
! AGAAAAGGACAGTATTTATT+AGG + chr7_4:20552506-20552525 Msa1144470:intron 25.0%
!!! ATTAGGAGCTTTAAAATCAT+TGG + chr7_4:20552523-20552542 Msa1144470:intron 25.0%
! GAAATAAAAAATGTCCCAAA+AGG + chr7_4:20552680-20552699 Msa1144470:intron 25.0%
!! AAATGTCAAATAGTCCTTTT+GGG - chr7_4:20552697-20552716 None:intergenic 25.0%
! AAAATAAAAAGAGTCTTGGT+TGG - chr7_4:20552910-20552929 None:intergenic 25.0%
! ATGCAAAATAAAAAGAGTCT+TGG - chr7_4:20552914-20552933 None:intergenic 25.0%
!!! ACTAATGGAATTTGATTTTC+TGG + chr7_4:20552938-20552957 Msa1144470:intron 25.0%
!!! CTAATGGAATTTGATTTTCT+GGG + chr7_4:20552939-20552958 Msa1144470:intron 25.0%
!! AAGTATTCAACATCATTTTC+TGG - chr7_4:20552981-20553000 None:intergenic 25.0%
!!! GCCATTTTCATAAACTTTAT+TGG + chr7_4:20553285-20553304 Msa1144470:intron 25.0%
!!! TGTTTTCAGCTTATTTTCAT+TGG - chr7_4:20553315-20553334 None:intergenic 25.0%
! TAAGTTATGTGAGACTATTT+GGG - chr7_4:20553370-20553389 None:intergenic 25.0%
! ATAAGTTATGTGAGACTATT+TGG - chr7_4:20553371-20553390 None:intergenic 25.0%
!! CTCTTGAAATATGGTATTTT+AGG + chr7_4:20553672-20553691 Msa1144470:intron 25.0%
!!! AAATATGGTATTTTAGGCAA+AGG + chr7_4:20553678-20553697 Msa1144470:intron 25.0%
!!! AATATGGTATTTTAGGCAAA+GGG + chr7_4:20553679-20553698 Msa1144470:intron 25.0%
!! AATATTTTGTGACCAACTTA+AGG + chr7_4:20553886-20553905 Msa1144470:exon 25.0%
!! ATATTTTGTGACCAACTTAA+GGG + chr7_4:20553887-20553906 Msa1144470:exon 25.0%
! TCGCAGTAGTAATAAAAATT+AGG + chr7_4:20553924-20553943 Msa1144470:three_prime_UTR 25.0%
! ATCTATTAGATACGATATCT+AGG - chr7_4:20553958-20553977 None:intergenic 25.0%
TTCACATATAGTCGAAAACT+TGG + chr7_4:20548896-20548915 Msa1144470:CDS 30.0%
!!! TTCATGCTACTTTTCTTATC+AGG + chr7_4:20548983-20549002 Msa1144470:intron 30.0%
! TACTTTTCTTATCAGGAAAC+AGG + chr7_4:20548990-20549009 Msa1144470:intron 30.0%
GTATCAATGTCTCTCAAAAA+CGG + chr7_4:20549043-20549062 Msa1144470:CDS 30.0%
!! AGATTTGCTATCATTGACAT+TGG + chr7_4:20549139-20549158 Msa1144470:CDS 30.0%
ACAAAAATCTCAGCATACTT+TGG - chr7_4:20549349-20549368 None:intergenic 30.0%
TTTCTCTTGTCTAGAAAGAA+TGG + chr7_4:20549368-20549387 Msa1144470:intron 30.0%
!! ATTGTGTCGATTTCTATTGA+TGG + chr7_4:20549473-20549492 Msa1144470:CDS 30.0%
CACTATTTAACAACACTGAT+TGG - chr7_4:20549554-20549573 None:intergenic 30.0%
! CAATCAGTGTTGTTAAATAG+TGG + chr7_4:20549552-20549571 Msa1144470:intron 30.0%
CAACTCTCATTGTAAAGTAA+AGG - chr7_4:20549828-20549847 None:intergenic 30.0%
! TGTGGATAAATTTTCCAACT+CGG - chr7_4:20550126-20550145 None:intergenic 30.0%
AACTCCAATTGCTTGTTTAA+AGG + chr7_4:20550254-20550273 Msa1144470:CDS 30.0%
GCTTAATATAGTTGTTTGGA+AGG - chr7_4:20550388-20550407 None:intergenic 30.0%
TGGTGCTTAATATAGTTGTT+TGG - chr7_4:20550392-20550411 None:intergenic 30.0%
AACAACTATATTAAGCACCA+CGG + chr7_4:20550392-20550411 Msa1144470:intron 30.0%
! TTTATATGTGAGTTGGCTAT+CGG - chr7_4:20550456-20550475 None:intergenic 30.0%
AGCATTATCCCTATAAAATG+GGG - chr7_4:20550531-20550550 None:intergenic 30.0%
TAAGGTTGCACTATTCAAAT+TGG - chr7_4:20550578-20550597 None:intergenic 30.0%
TATATATTGCTGTGTTGCAA+TGG + chr7_4:20550726-20550745 Msa1144470:intron 30.0%
!!! TATCCTTTCAGGTTTTCAAA+AGG + chr7_4:20550817-20550836 Msa1144470:intron 30.0%
!! ATAAGCTTTGGAGCTTATAT+AGG + chr7_4:20551180-20551199 Msa1144470:intron 30.0%
AATTAATAAGCACCAACCAT+AGG - chr7_4:20551220-20551239 None:intergenic 30.0%
TGATTCTTAGGTTACATCAT+TGG + chr7_4:20551320-20551339 Msa1144470:intron 30.0%
GATTCTTAGGTTACATCATT+GGG + chr7_4:20551321-20551340 Msa1144470:intron 30.0%
TCTAAGGAAGATATTTGTGA+GGG - chr7_4:20551525-20551544 None:intergenic 30.0%
TAAAATTAACTCACTTGGGT+TGG + chr7_4:20551699-20551718 Msa1144470:intron 30.0%
CTTCATGATTTCAACAATGT+GGG - chr7_4:20552065-20552084 None:intergenic 30.0%
ACTTCATGATTTCAACAATG+TGG - chr7_4:20552066-20552085 None:intergenic 30.0%
! TTGGTTATTTCAACAATGTG+AGG - chr7_4:20552092-20552111 None:intergenic 30.0%
!! GCTTAGTTTAGAATTTTGGT+TGG + chr7_4:20552113-20552132 Msa1144470:intron 30.0%
!! CTCATAAGTCAGTTTTGTAA+GGG - chr7_4:20552226-20552245 None:intergenic 30.0%
!! TCTCATAAGTCAGTTTTGTA+AGG - chr7_4:20552227-20552246 None:intergenic 30.0%
CTCACTTATAAACACATTGT+TGG + chr7_4:20552258-20552277 Msa1144470:intron 30.0%
GGATTATATATCTACCAATG+TGG + chr7_4:20552279-20552298 Msa1144470:intron 30.0%
AAGTGTTAAAAGTTCCACAT+TGG - chr7_4:20552296-20552315 None:intergenic 30.0%
! ATTCAAGTTTGTTCTTGATG+AGG + chr7_4:20552344-20552363 Msa1144470:intron 30.0%
! TTGACTTGAGTGACAATATT+AGG + chr7_4:20552418-20552437 Msa1144470:intron 30.0%
!! TCTTTCTAAAAGGCCATTTT+GGG - chr7_4:20552656-20552675 None:intergenic 30.0%
!! TTCTTTCTAAAAGGCCATTT+TGG - chr7_4:20552657-20552676 None:intergenic 30.0%
!! AATGGCCTTTTAGAAAGAAA+AGG + chr7_4:20552658-20552677 Msa1144470:intron 30.0%
! GAAATGTCAAATAGTCCTTT+TGG - chr7_4:20552698-20552717 None:intergenic 30.0%
TTTCCTTGTCTTTAGTACTT+AGG + chr7_4:20552714-20552733 Msa1144470:intron 30.0%
TTCCTTGTCTTTAGTACTTA+GGG + chr7_4:20552715-20552734 Msa1144470:intron 30.0%
!! ATGTTGGTTCATTTATGTTC+AGG + chr7_4:20552804-20552823 Msa1144470:intron 30.0%
!! TGTTGGTTCATTTATGTTCA+GGG + chr7_4:20552805-20552824 Msa1144470:intron 30.0%
ACAGATAACAGAACCAAATT+TGG - chr7_4:20552837-20552856 None:intergenic 30.0%
! AGTTTGCTTTGATTGTGTTA+TGG - chr7_4:20552869-20552888 None:intergenic 30.0%
AATGATGTTGAATACTTGCA+TGG + chr7_4:20552984-20553003 Msa1144470:CDS 30.0%
! TGAATACTTGCATGGAATTT+TGG + chr7_4:20552992-20553011 Msa1144470:CDS 30.0%
!! ATTGATTTTGTTCCAAGAAC+TGG + chr7_4:20553119-20553138 Msa1144470:intron 30.0%
TTAAGTTAGAAACCAGTTCT+TGG - chr7_4:20553134-20553153 None:intergenic 30.0%
! AAGAACTGGTTTCTAACTTA+AGG + chr7_4:20553133-20553152 Msa1144470:intron 30.0%
TTCTAACTTAAGGCTATGTT+TGG + chr7_4:20553143-20553162 Msa1144470:intron 30.0%
GAACTCATGAAAACAACTTA+CGG - chr7_4:20553346-20553365 None:intergenic 30.0%
TCAAACAAGTCAATCTAAAC+AGG + chr7_4:20553400-20553419 Msa1144470:intron 30.0%
ACTCCAAATTCTAACTTCAT+GGG - chr7_4:20553426-20553445 None:intergenic 30.0%
AACTCCAAATTCTAACTTCA+TGG - chr7_4:20553427-20553446 None:intergenic 30.0%
!! TATTTTAGGCAAAGGGATAT+GGG + chr7_4:20553686-20553705 Msa1144470:intron 30.0%
CTTATCTTCCCAAAGGATAA+GGG - chr7_4:20548822-20548841 None:intergenic 35.0%
TCTTATCTTCCCAAAGGATA+AGG - chr7_4:20548823-20548842 None:intergenic 35.0%
! CCATTTTCTTATCTTCCCAA+AGG - chr7_4:20548829-20548848 None:intergenic 35.0%
! CCTTTGGGAAGATAAGAAAA+TGG + chr7_4:20548826-20548845 Msa1144470:exon 35.0%
TGGGAAGATAAGAAAATGGT+AGG + chr7_4:20548830-20548849 Msa1144470:exon 35.0%
ATGTTAAAATGGTGCTTGCT+GGG - chr7_4:20548874-20548893 None:intergenic 35.0%
GGAAACAGGTTATTACTGTT+AGG + chr7_4:20549004-20549023 Msa1144470:intron 35.0%
AGAGACATTGATACTGTTCT+TGG - chr7_4:20549037-20549056 None:intergenic 35.0%
AATGATAGCAAATCTTGCAC+CGG - chr7_4:20549134-20549153 None:intergenic 35.0%
! TTTGCTATCATTGACATTGG+TGG + chr7_4:20549142-20549161 Msa1144470:CDS 35.0%
GAAAATGATACCGAGTATAG+TGG - chr7_4:20549199-20549218 None:intergenic 35.0%
CAACTACTATCATTGTTGCT+AGG + chr7_4:20549504-20549523 Msa1144470:CDS 35.0%
! GTGTTGTTAAATAGTGGCTA+TGG + chr7_4:20549558-20549577 Msa1144470:intron 35.0%
TAAAGTAAAGGTCTCCACAA+CGG - chr7_4:20549816-20549835 None:intergenic 35.0%
GACGGTAAAAGATGAGAATA+TGG - chr7_4:20550219-20550238 None:intergenic 35.0%
TCCAATTGCTTGTTTAAAGG+AGG + chr7_4:20550257-20550276 Msa1144470:CDS 35.0%
TCCTCCTTTAAACAAGCAAT+TGG - chr7_4:20550261-20550280 None:intergenic 35.0%
! TTATATGTGAGTTGGCTATC+GGG - chr7_4:20550455-20550474 None:intergenic 35.0%
! AAGTTCCAACCCCATTTTAT+AGG + chr7_4:20550519-20550538 Msa1144470:intron 35.0%
! AGTTCCAACCCCATTTTATA+GGG + chr7_4:20550520-20550539 Msa1144470:intron 35.0%
TTATCCCTATAAAATGGGGT+TGG - chr7_4:20550527-20550546 None:intergenic 35.0%
!!! TTGTGCATCGATTTTACTTG+TGG - chr7_4:20550684-20550703 None:intergenic 35.0%
! GCATTGGATTTTCCTTAACT+TGG + chr7_4:20550748-20550767 Msa1144470:intron 35.0%
!! ACTCCTTTTGAAAACCTGAA+AGG - chr7_4:20550823-20550842 None:intergenic 35.0%
! CAAGAAATTACAGCTTTTCC+AGG - chr7_4:20550908-20550927 None:intergenic 35.0%
GGATGCATTTAAATACAGTG+TGG - chr7_4:20551112-20551131 None:intergenic 35.0%
CACTGTATTTAAATGCATCC+TGG + chr7_4:20551112-20551131 Msa1144470:intron 35.0%
GCATAAAAAGCTATCCACAA+TGG - chr7_4:20551277-20551296 None:intergenic 35.0%
ATTAAGCAACTCAAGAATCG+AGG + chr7_4:20551365-20551384 Msa1144470:CDS 35.0%
CAACAAGCCATTTATCATCA+AGG - chr7_4:20551419-20551438 None:intergenic 35.0%
! CTTGATGATAAATGGCTTGT+TGG + chr7_4:20551417-20551436 Msa1144470:CDS 35.0%
CAGTTTCTCTAGTTGATCAT+CGG - chr7_4:20551487-20551506 None:intergenic 35.0%
GTCTAAGGAAGATATTTGTG+AGG - chr7_4:20551526-20551545 None:intergenic 35.0%
AAAAGCTGGTGAAAGATTTC+CGG + chr7_4:20551560-20551579 Msa1144470:CDS 35.0%
ATATAACGTGAGATGTCAAG+AGG - chr7_4:20551754-20551773 None:intergenic 35.0%
ATCTCACGTTATATTCTCCT+TGG + chr7_4:20551760-20551779 Msa1144470:intron 35.0%
GACAGGATTTCAACTTCATT+TGG - chr7_4:20551917-20551936 None:intergenic 35.0%
ACAACAAGATGTCCAGAATT+GGG - chr7_4:20552158-20552177 None:intergenic 35.0%
TACAACAAGATGTCCAGAAT+TGG - chr7_4:20552159-20552178 None:intergenic 35.0%
! TTCTGGACATCTTGTTGTAT+AGG + chr7_4:20552160-20552179 Msa1144470:intron 35.0%
! CAAAACTGACTTATGAGATG+AGG + chr7_4:20552229-20552248 Msa1144470:intron 35.0%
! TCATTGGAGTACTTCTCATT+TGG + chr7_4:20552539-20552558 Msa1144470:intron 35.0%
TCATTTGGCAATCCTTACAT+TGG + chr7_4:20552554-20552573 Msa1144470:intron 35.0%
!! TTAGGAGCTTTAAAAAGGAC+AGG + chr7_4:20552587-20552606 Msa1144470:intron 35.0%
TTGCTTTGATTGTGTTATGG+TGG - chr7_4:20552866-20552885 None:intergenic 35.0%
!! AGGCTTTTAACTAACTGTGA+AGG - chr7_4:20553454-20553473 None:intergenic 35.0%
ATTCATCCACTAGATCCTAA+TGG + chr7_4:20553643-20553662 Msa1144470:intron 35.0%
!! TTTCAAGAGTGCTTACCATT+AGG - chr7_4:20553661-20553680 None:intergenic 35.0%
TGGTAAGCACTCTTGAAATA+TGG + chr7_4:20553663-20553682 Msa1144470:intron 35.0%
!! GTATTTTAGGCAAAGGGATA+TGG + chr7_4:20553685-20553704 Msa1144470:intron 35.0%
TGTGAAAACTTGATCCACTA+CGG - chr7_4:20553734-20553753 None:intergenic 35.0%
GAACAATGGTGGTAAAGTTG+CGG - chr7_4:20548791-20548810 None:intergenic 40.0%
TAAGGGAACTTCAGGAACAA+TGG - chr7_4:20548805-20548824 None:intergenic 40.0%
CTGAAGTTCCCTTATCCTTT+GGG + chr7_4:20548811-20548830 Msa1144470:five_prime_UTR 40.0%
GATGTTAAAATGGTGCTTGC+TGG - chr7_4:20548875-20548894 None:intergenic 40.0%
AAAAAAAGTAGTGTGGGAGC+AGG + chr7_4:20549073-20549092 Msa1144470:CDS 40.0%
!! GATACCGAGTATAGTGGATA+GGG - chr7_4:20549193-20549212 None:intergenic 40.0%
!! TGATACCGAGTATAGTGGAT+AGG - chr7_4:20549194-20549213 None:intergenic 40.0%
AGAATGGAGAGTCACATGAT+TGG + chr7_4:20549384-20549403 Msa1144470:intron 40.0%
GAATGGAGAGTCACATGATT+GGG + chr7_4:20549385-20549404 Msa1144470:intron 40.0%
TGTGTTTGCGAAGGTTAAGT+GGG - chr7_4:20549454-20549473 None:intergenic 40.0%
ATGTGTTTGCGAAGGTTAAG+TGG - chr7_4:20549455-20549474 None:intergenic 40.0%
TGTTATTGCACCAAGCAGAT+TGG + chr7_4:20549973-20549992 Msa1144470:CDS 40.0%
! AAGTGGACTCATATCCATCA+TGG + chr7_4:20550181-20550200 Msa1144470:CDS 40.0%
AAACAAGCAATTGGAGTTCC+AGG - chr7_4:20550252-20550271 None:intergenic 40.0%
ATCTGTACCAAGCAACACTT+TGG + chr7_4:20550338-20550357 Msa1144470:intron 40.0%
TCTGTACCAAGCAACACTTT+GGG + chr7_4:20550339-20550358 Msa1144470:intron 40.0%
!! TATTACCCCAAAGTGTTGCT+TGG - chr7_4:20550348-20550367 None:intergenic 40.0%
! TATATGTGAGTTGGCTATCG+GGG - chr7_4:20550454-20550473 None:intergenic 40.0%
! GATTTTACTTGTGGCACAAC+TGG - chr7_4:20550675-20550694 None:intergenic 40.0%
GCACAAGTAACACAACTTTC+TGG + chr7_4:20550698-20550717 Msa1144470:intron 40.0%
TTCTCATGGGAGATAAGCTT+TGG + chr7_4:20551168-20551187 Msa1144470:intron 40.0%
CCACAATGGTGAATCTAAAG+AGG - chr7_4:20551263-20551282 None:intergenic 40.0%
CCTCTTTAGATTCACCATTG+TGG + chr7_4:20551260-20551279 Msa1144470:intron 40.0%
ACTCAAGAATCGAGGATTCT+CGG + chr7_4:20551373-20551392 Msa1144470:CDS 40.0%
! GTCATCGCCTTGATGATAAA+TGG + chr7_4:20551409-20551428 Msa1144470:CDS 40.0%
!! GATGATAAATGGCTTGTTGG+TGG + chr7_4:20551420-20551439 Msa1144470:CDS 40.0%
! GGAAATCTTTCACCAGCTTT+TGG - chr7_4:20551561-20551580 None:intergenic 40.0%
AATGGATCCATTCAGTACCT+TGG - chr7_4:20551606-20551625 None:intergenic 40.0%
! TTGGCATGATGATGTTGACT+TGG + chr7_4:20551718-20551737 Msa1144470:intron 40.0%
!! TGGCATGATGATGTTGACTT+GGG + chr7_4:20551719-20551738 Msa1144470:intron 40.0%
!! ATTGGATCCCTTGGATTAGT+CGG + chr7_4:20551829-20551848 Msa1144470:intron 40.0%
CTTAAGACCGACTAATCCAA+GGG - chr7_4:20551839-20551858 None:intergenic 40.0%
CAATGTGGGAACTTATGCTT+TGG - chr7_4:20552051-20552070 None:intergenic 40.0%
ATGTCCAGAATTGGGCATAA+GGG - chr7_4:20552150-20552169 None:intergenic 40.0%
TTTCTTGAGAAGTCACCGTT+AGG + chr7_4:20552451-20552470 Msa1144470:intron 40.0%
!!! CCATTTTGGGACACTTGTTA+AGG - chr7_4:20552643-20552662 None:intergenic 40.0%
CCTTAACAAGTGTCCCAAAA+TGG + chr7_4:20552640-20552659 Msa1144470:intron 40.0%
AGCCCTAAGTACTAAAGACA+AGG - chr7_4:20552720-20552739 None:intergenic 40.0%
TTCAGGGACAAAGCCAAATT+TGG + chr7_4:20552821-20552840 Msa1144470:intron 40.0%
!! TGGAATTTGATTTTCTGGGC+AGG + chr7_4:20552943-20552962 Msa1144470:intron 40.0%
! TCAACATCATTTTCTGGACG+TGG - chr7_4:20552975-20552994 None:intergenic 40.0%
TCTTACCTCTATACGTGCAA+TGG - chr7_4:20553021-20553040 None:intergenic 40.0%
AGGCCCATGAAGTTAGAATT+TGG + chr7_4:20553420-20553439 Msa1144470:intron 40.0%
TGCTTACCATTAGGATCTAG+TGG - chr7_4:20553652-20553671 None:intergenic 40.0%
! AAAGGGATATGGGTTGCTAA+AGG + chr7_4:20553696-20553715 Msa1144470:CDS 40.0%
! TATGGGTTGCTAAAGGATCT+AGG + chr7_4:20553703-20553722 Msa1144470:CDS 40.0%
AGTGGACAAAGATACGAGAA+AGG + chr7_4:20553779-20553798 Msa1144470:CDS 40.0%
GTGGACAAAGATACGAGAAA+GGG + chr7_4:20553780-20553799 Msa1144470:CDS 40.0%
AACCAAACAGAAGCTGCATA+CGG + chr7_4:20553829-20553848 Msa1144470:CDS 40.0%
AACTGCATTGTTGGCAATGA+AGG + chr7_4:20553852-20553871 Msa1144470:CDS 40.0%
ACTGCATTGTTGGCAATGAA+GGG + chr7_4:20553853-20553872 Msa1144470:CDS 40.0%
TGATGCATTTGCCCTTAAGT+TGG - chr7_4:20553901-20553920 None:intergenic 40.0%
CCAAAGGATAAGGGAACTTC+AGG - chr7_4:20548813-20548832 None:intergenic 45.0%
CCTGAAGTTCCCTTATCCTT+TGG + chr7_4:20548810-20548829 Msa1144470:five_prime_UTR 45.0%
! TAAAATGGTGCTTGCTGGGT+GGG - chr7_4:20548870-20548889 None:intergenic 45.0%
! TTAAAATGGTGCTTGCTGGG+TGG - chr7_4:20548871-20548890 None:intergenic 45.0%
TCGACACAATGTGTTTGCGA+AGG - chr7_4:20549463-20549482 None:intergenic 45.0%
ATGTTGTACTGCAGTGACAC+AGG + chr7_4:20549786-20549805 Msa1144470:intron 45.0%
TTTACAGCAGGTAGTGCATC+AGG - chr7_4:20549852-20549871 None:intergenic 45.0%
!! GGTGCAATGGATTTTACAGC+AGG - chr7_4:20549864-20549883 None:intergenic 45.0%
! TGTATGGTTTGGAGGTGCAA+TGG - chr7_4:20549877-20549896 None:intergenic 45.0%
! GAGCATACTGTATGGTTTGG+AGG - chr7_4:20549885-20549904 None:intergenic 45.0%
GCAGAGCATACTGTATGGTT+TGG - chr7_4:20549888-20549907 None:intergenic 45.0%
ACGATGCAGAGCATACTGTA+TGG - chr7_4:20549893-20549912 None:intergenic 45.0%
!!! ACCAAGCAGATTGGCTTTTG+TGG + chr7_4:20549982-20550001 Msa1144470:CDS 45.0%
! TGGCTTTTGTGGCTTCTTCA+TGG + chr7_4:20549993-20550012 Msa1144470:CDS 45.0%
TGGCTTCTTCATGGAAAGCT+TGG + chr7_4:20550002-20550021 Msa1144470:CDS 45.0%
GATGGATATGAGTCCACTTC+AGG - chr7_4:20550180-20550199 None:intergenic 45.0%
CTGTACCAAGCAACACTTTG+GGG + chr7_4:20550340-20550359 Msa1144470:intron 45.0%
TCAAGTCTCAACGCTCAAGA+AGG - chr7_4:20550631-20550650 None:intergenic 45.0%
CTTGTGGCACAACTGGAATT+TGG - chr7_4:20550668-20550687 None:intergenic 45.0%
TTGCTGTGTTGCAATGGCAT+TGG + chr7_4:20550732-20550751 Msa1144470:intron 45.0%
TACACGGTGCATATCCTTTC+AGG + chr7_4:20550806-20550825 Msa1144470:intron 45.0%
! AAGGAGTGTGTTGTATGCAC+CGG + chr7_4:20550836-20550855 Msa1144470:CDS 45.0%
AGCTATACTGTCAGTGGTTC+CGG - chr7_4:20550858-20550877 None:intergenic 45.0%
AAACGCAGCTATACTGTCAG+TGG - chr7_4:20550864-20550883 None:intergenic 45.0%
AATGCTCTGTGGTCTTCTCA+TGG + chr7_4:20551154-20551173 Msa1144470:intron 45.0%
ATGCTCTGTGGTCTTCTCAT+GGG + chr7_4:20551155-20551174 Msa1144470:intron 45.0%
CCAACCATAGGAACGAACAA+AGG - chr7_4:20551208-20551227 None:intergenic 45.0%
CCTTTGTTCGTTCCTATGGT+TGG + chr7_4:20551205-20551224 Msa1144470:intron 45.0%
!! TAAAGAGGTGCTTGGCCTTA+AGG - chr7_4:20551248-20551267 None:intergenic 45.0%
!! GGTGAATCTAAAGAGGTGCT+TGG - chr7_4:20551256-20551275 None:intergenic 45.0%
AGAATCGAGGATTCTCGGTT+TGG + chr7_4:20551378-20551397 Msa1144470:CDS 45.0%
GAATCGAGGATTCTCGGTTT+GGG + chr7_4:20551379-20551398 Msa1144470:CDS 45.0%
! AATCGAGGATTCTCGGTTTG+GGG + chr7_4:20551380-20551399 Msa1144470:CDS 45.0%
!! GTTGGTGGTGCTTCAAATAC+TGG + chr7_4:20551435-20551454 Msa1144470:CDS 45.0%
TGGCAGAGGATAGTAGTCTA+AGG - chr7_4:20551541-20551560 None:intergenic 45.0%
TACTATCCTCTGCCAAAAGC+TGG + chr7_4:20551546-20551565 Msa1144470:CDS 45.0%
!! TTTGGCTCCAAGGTACTGAA+TGG + chr7_4:20551596-20551615 Msa1144470:intron 45.0%
! GGATCCATTTTGCTCTCTGT+TGG + chr7_4:20551617-20551636 Msa1144470:intron 45.0%
CGTTCCAACAGAGAGCAAAA+TGG - chr7_4:20551624-20551643 None:intergenic 45.0%
!! TCCTTGGTGCCAATTTCGTT+GGG + chr7_4:20551776-20551795 Msa1144470:intron 45.0%
!! AAGGACTAGCCCAACGAAAT+TGG - chr7_4:20551788-20551807 None:intergenic 45.0%
TTAACCTGCAAGTGGACGAT+GGG + chr7_4:20551806-20551825 Msa1144470:intron 45.0%
GCTTAAGACCGACTAATCCA+AGG - chr7_4:20551840-20551859 None:intergenic 45.0%
!! TGGATTAGTCGGTCTTAAGC+CGG + chr7_4:20551840-20551859 Msa1144470:intron 45.0%
TGTGGGAACTTATGCTTTGG+AGG - chr7_4:20552048-20552067 None:intergenic 45.0%
TCAACCCTTATGCCCAATTC+TGG + chr7_4:20552143-20552162 Msa1144470:intron 45.0%
GATGTCCAGAATTGGGCATA+AGG - chr7_4:20552151-20552170 None:intergenic 45.0%
GGAATCCATTGCACGTATAG+AGG + chr7_4:20553013-20553032 Msa1144470:CDS 45.0%
! GTGGATCAAGTTTTCACAGC+CGG + chr7_4:20553736-20553755 Msa1144470:CDS 45.0%
GAGGAGCGAAAAATGAGAAG+TGG + chr7_4:20553761-20553780 Msa1144470:CDS 45.0%
!! AAGATACGAGAAAGGGTGCT+TGG + chr7_4:20553787-20553806 Msa1144470:CDS 45.0%
TTCCGTATGCAGCTTCTGTT+TGG - chr7_4:20553834-20553853 None:intergenic 45.0%
TGCATACGGAACTGCATTGT+TGG + chr7_4:20553843-20553862 Msa1144470:CDS 45.0%
!!! TTTTTTTTTTTTTTAAAACT+CGG - chr7_4:20551869-20551888 None:intergenic 5.0%
TGGTGGTAAAGTTGCGGACT+GGG - chr7_4:20548785-20548804 None:intergenic 50.0%
ATGGTGGTAAAGTTGCGGAC+TGG - chr7_4:20548786-20548805 None:intergenic 50.0%
GGGAACTTCAGGAACAATGG+TGG - chr7_4:20548802-20548821 None:intergenic 50.0%
GCAGGTGAAAGGCTGTATCT+CGG + chr7_4:20549091-20549110 Msa1144470:CDS 50.0%
CAGGTGAAAGGCTGTATCTC+GGG + chr7_4:20549092-20549111 Msa1144470:CDS 50.0%
TGAAAGGCTGTATCTCGGGT+TGG + chr7_4:20549096-20549115 Msa1144470:CDS 50.0%
!! CTGTATCTCGGGTTGGACTT+TGG + chr7_4:20549103-20549122 Msa1144470:CDS 50.0%
GCGACCCTATCCACTATACT+CGG + chr7_4:20549186-20549205 Msa1144470:CDS 50.0%
CTCTGTGTAAGCTCGTGTCA+TGG + chr7_4:20549916-20549935 Msa1144470:CDS 50.0%
TGTGTAAGCTCGTGTCATGG+TGG + chr7_4:20549919-20549938 Msa1144470:CDS 50.0%
! GTGTCATGGTGGAATCGTGA+TGG + chr7_4:20549930-20549949 Msa1144470:CDS 50.0%
GCCACAAAAGCCAATCTGCT+TGG - chr7_4:20549986-20550005 None:intergenic 50.0%
CTCTGTTGCGATATCCGAGT+TGG + chr7_4:20550109-20550128 Msa1144470:intron 50.0%
GGTTGGGTATGATCCTGAAG+TGG + chr7_4:20550164-20550183 Msa1144470:intron 50.0%
! GGTTGAGAGACTAGCCATGA+TGG - chr7_4:20550198-20550217 None:intergenic 50.0%
TGGAGTTCCAGGTGCAAGAA+CGG - chr7_4:20550241-20550260 None:intergenic 50.0%
GCGTTGAGACTTGAGACACA+CGG + chr7_4:20550637-20550656 Msa1144470:intron 50.0%
GGCTCCTTTGTTCGTTCCTA+TGG + chr7_4:20551201-20551220 Msa1144470:intron 50.0%
GGTGGTGCTTCAAATACTGG+AGG + chr7_4:20551438-20551457 Msa1144470:CDS 50.0%
! CTTTCACCAGCTTTTGGCAG+AGG - chr7_4:20551555-20551574 None:intergenic 50.0%
TCCGGTTGCAGATCCAGATT+TGG + chr7_4:20551578-20551597 Msa1144470:CDS 50.0%
GCCAAATCTGGATCTGCAAC+CGG - chr7_4:20551582-20551601 None:intergenic 50.0%
! CAGATCCAGATTTGGCTCCA+AGG + chr7_4:20551586-20551605 Msa1144470:CDS 50.0%
CAGTACCTTGGAGCCAAATC+TGG - chr7_4:20551594-20551613 None:intergenic 50.0%
!! CTCCTTGGTGCCAATTTCGT+TGG + chr7_4:20551775-20551794 Msa1144470:intron 50.0%
GCTAGTCCTTAACCTGCAAG+TGG + chr7_4:20551798-20551817 Msa1144470:intron 50.0%
CATCGTCCACTTGCAGGTTA+AGG - chr7_4:20551807-20551826 None:intergenic 50.0%
CTTAACCTGCAAGTGGACGA+TGG + chr7_4:20551805-20551824 Msa1144470:intron 50.0%
! GATCAAGTTTTCACAGCCGG+TGG + chr7_4:20553739-20553758 Msa1144470:CDS 50.0%
!! CTCATTTTTCGCTCCTCCAC+CGG - chr7_4:20553758-20553777 None:intergenic 50.0%
!! GTTTGGTTTGCACGACTCAC+AGG - chr7_4:20553817-20553836 None:intergenic 50.0%
!! GCGGACTGGGAGCGAAAAAA+AGG - chr7_4:20548772-20548791 None:intergenic 55.0%
GTAGTGTGGGAGCAGGTGAA+AGG + chr7_4:20549080-20549099 Msa1144470:CDS 55.0%
GGGTTGGACTTTGGCACTTC+CGG + chr7_4:20549112-20549131 Msa1144470:CDS 55.0%
TGGTGGCACAATTCAAGCCG+AGG + chr7_4:20549159-20549178 Msa1144470:CDS 55.0%
! TGGATAGGGTCGCTTTGCCT+CGG - chr7_4:20549179-20549198 None:intergenic 55.0%
CACATGATTGGGTACGCTCG+TGG + chr7_4:20549396-20549415 Msa1144470:CDS 55.0%
GTGACACAGGAGAACCGTTG+TGG + chr7_4:20549799-20549818 Msa1144470:intron 55.0%
TTACCGTCCGTTCTTGCACC+TGG + chr7_4:20550231-20550250 Msa1144470:CDS 55.0%
GTTCCAGGTGCAAGAACGGA+CGG - chr7_4:20550237-20550256 None:intergenic 55.0%
GCCCAACGAAATTGGCACCA+AGG - chr7_4:20551780-20551799 None:intergenic 55.0%
CAATCCCATCGTCCACTTGC+AGG - chr7_4:20551813-20551832 None:intergenic 55.0%
CTGCAAGTGGACGATGGGAT+TGG + chr7_4:20551811-20551830 Msa1144470:intron 55.0%
GACGATGGGATTGGATCCCT+TGG + chr7_4:20551820-20551839 Msa1144470:intron 55.0%
GGATCTAGGTGCAACCGTAG+TGG + chr7_4:20553717-20553736 Msa1144470:CDS 55.0%
! CAAGTTTTCACAGCCGGTGG+AGG + chr7_4:20553742-20553761 Msa1144470:CDS 55.0%
! GCAGCTCGTGCTACTCAACC+TGG + chr7_4:20550887-20550906 Msa1144470:CDS 60.0%
CGCTCTCTGAGCCTTGAGCC+TGG + chr7_4:20550419-20550438 Msa1144470:intron 65.0%
TCTGAGCCTTGAGCCTGGCC+TGG + chr7_4:20550424-20550443 Msa1144470:intron 65.0%
GTTGGCTATCGGGGCTCACC+AGG - chr7_4:20550445-20550464 None:intergenic 65.0%
!! GGCTCAGAGAGCGCTGACCG+TGG - chr7_4:20550412-20550431 None:intergenic 70.0%
GGCTCACCAGGCCAGGCTCA+AGG - chr7_4:20550433-20550452 None:intergenic 70.0%
CTATCGGGGCTCACCAGGCC+AGG - chr7_4:20550440-20550459 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 20548757 20554106 20548757 ID=Msa1144470;Name=Msa1144470
chr7_4 mRNA 20548757 20554106 20548757 ID=Msa1144470-mRNA-1;Parent=Msa1144470;Name=Msa1144470-mRNA-1;_AED=0.21;_eAED=0.21;_QI=88|1|1|1|1|1|9|209|480
chr7_4 exon 20548757 20548917 20548757 ID=Msa1144470-mRNA-1:exon:4924;Parent=Msa1144470-mRNA-1
chr7_4 exon 20549005 20549207 20549005 ID=Msa1144470-mRNA-1:exon:4925;Parent=Msa1144470-mRNA-1
chr7_4 exon 20549386 20549525 20549386 ID=Msa1144470-mRNA-1:exon:4926;Parent=Msa1144470-mRNA-1
chr7_4 exon 20549800 20550052 20549800 ID=Msa1144470-mRNA-1:exon:4927;Parent=Msa1144470-mRNA-1
chr7_4 exon 20550165 20550297 20550165 ID=Msa1144470-mRNA-1:exon:4928;Parent=Msa1144470-mRNA-1
chr7_4 exon 20550828 20550916 20550828 ID=Msa1144470-mRNA-1:exon:4929;Parent=Msa1144470-mRNA-1
chr7_4 exon 20551330 20551607 20551330 ID=Msa1144470-mRNA-1:exon:4930;Parent=Msa1144470-mRNA-1
chr7_4 exon 20552965 20553034 20552965 ID=Msa1144470-mRNA-1:exon:4931;Parent=Msa1144470-mRNA-1
chr7_4 exon 20553694 20554106 20553694 ID=Msa1144470-mRNA-1:exon:4932;Parent=Msa1144470-mRNA-1
chr7_4 five_prime_UTR 20548757 20548844 20548757 ID=Msa1144470-mRNA-1:five_prime_utr;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20548845 20548917 20548845 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20549005 20549207 20549005 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20549386 20549525 20549386 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20549800 20550052 20549800 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20550165 20550297 20550165 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20550828 20550916 20550828 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20551330 20551607 20551330 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20552965 20553034 20552965 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 CDS 20553694 20553897 20553694 ID=Msa1144470-mRNA-1:cds;Parent=Msa1144470-mRNA-1
chr7_4 three_prime_UTR 20553898 20554106 20553898 ID=Msa1144470-mRNA-1:three_prime_utr;Parent=Msa1144470-mRNA-1
Gene Sequence

>Msa1144470

ATGGTAGGCACTGTTTCAGTAACCCACCCAGCAAGCACCATTTTAACATCTTTCACATATAGTCGAAAACTTGGAAACAGGTTATTACTGTTAGGTAACAAACCAAGAACAGTATCAATGTCTCTCAAAAACGGAGATAACAAAAAAAGTAGTGTGGGAGCAGGTGAAAGGCTGTATCTCGGGTTGGACTTTGGCACTTCCGGTGCAAGATTTGCTATCATTGACATTGGTGGCACAATTCAAGCCGAGGCAAAGCGACCCTATCCACTATACTCGAATGGAGAGTCACATGATTGGGTACGCTCGTGGAAAGAGACACTTTTTTTGTTGCTTGAAGATATCCCACTTAACCTTCGCAAACACATTGTGTCGATTTCTATTGATGGCACATCTGCAACTACTATCATTGTTGCTAGTGACACAGGAGAACCGTTGTGGAGACCTTTACTTTACAATGAGAGTTGTCCTGATGCACTACCTGCTGTAAAATCCATTGCACCTCCAAACCATACAGTATGCTCTGCATCGTCGACTCTGTGTAAGCTCGTGTCATGGTGGAATCGTGATGGTTCAAACAAAAAATCTGCTCTGTTATTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAGCTTGGAGTTTCAGATTATAATAATGCTCTGAAGGTTGGGTATGATCCTGAAGTGGACTCATATCCATCATGGCTAGTCTCTCAACCATATTCTCATCTTTTACCGTCCGTTCTTGCACCTGGAACTCCAATTGCTTGTTTAAAGGAGGAACTTAGAAATAAATTTGGTTTTCAAAAGGAGTGTGTTGTATGCACCGGAACCACTGACAGTATAGCTGCGTTTCTTGCAGCTCGTGCTACTCAACCTGGAAAAGCTGTTACATCATTGGGTTCAACACTTGCTATTAAACTATTAAGCAACTCAAGAATCGAGGATTCTCGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAATGGCTTGTTGGTGGTGCTTCAAATACTGGAGGAGTTGTTCTTAGACAGCTTTTCACCGATGATCAACTAGAGAAACTGAGTGAACAAATCAATCCCTCACAAATATCTTCCTTAGACTACTATCCTCTGCCAAAAGCTGGTGAAAGATTTCCGGTTGCAGATCCAGATTTGGCTCCAAGGCTACTTCCACGTCCAGAAAATGATGTTGAATACTTGCATGGAATTTTGGAATCCATTGCACGTATAGAGGCAAAGGGATATGGGTTGCTAAAGGATCTAGGTGCAACCGTAGTGGATCAAGTTTTCACAGCCGGTGGAGGAGCGAAAAATGAGAAGTGGACAAAGATACGAGAAAGGGTGCTTGGTTTACCTGTGAGTCGTGCAAACCAAACAGAAGCTGCATACGGAACTGCATTGTTGGCAATGAAGGGTGATCAACAAAATATTTTGTGA

Protein sequence

>Msa1144470

MVGTVSVTHPASTILTSFTYSRKLGNRLLLLGNKPRTVSMSLKNGDNKKSSVGAGERLYLGLDFGTSGARFAIIDIGGTIQAEAKRPYPLYSNGESHDWVRSWKETLFLLLEDIPLNLRKHIVSISIDGTSATTIIVASDTGEPLWRPLLYNESCPDALPAVKSIAPPNHTVCSASSTLCKLVSWWNRDGSNKKSALLLHQADWLLWLLHGKLGVSDYNNALKVGYDPEVDSYPSWLVSQPYSHLLPSVLAPGTPIACLKEELRNKFGFQKECVVCTGTTDSIAAFLAARATQPGKAVTSLGSTLAIKLLSNSRIEDSRFGVYSHRLDDKWLVGGASNTGGVVLRQLFTDDQLEKLSEQINPSQISSLDYYPLPKAGERFPVADPDLAPRLLPRPENDVEYLHGILESIARIEAKGYGLLKDLGATVVDQVFTAGGGAKNEKWTKIRERVLGLPVSRANQTEAAYGTALLAMKGDQQNIL*