Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969640 | XP_013450730.1 | 84.051 | 627 | 17 | 6 | 1 | 599 | 1 | 572 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969640 | sp|Q9RB36|TRUB_FLAJ1 | 44.298 | 228 | 101 | 3 | 374 | 594 | 20 | 228 | 1.69e-53 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969640 | A0A072U4X6 | 84.051 | 627 | 17 | 6 | 1 | 599 | 1 | 572 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0969640 | 0.834156 | 3.528244e-56 | -8.615850e-47 |
| Msa0030000 | Msa0969640 | 0.808425 | 3.117197e-50 | -8.615850e-47 |
| Msa0031720 | Msa0969640 | 0.822664 | 2.098530e-53 | -8.615850e-47 |
| Msa0032120 | Msa0969640 | 0.842508 | 2.477124e-58 | -8.615850e-47 |
| Msa0032400 | Msa0969640 | 0.831720 | 1.422629e-55 | -8.615850e-47 |
| Msa0055590 | Msa0969640 | 0.840721 | 7.333681e-58 | -8.615850e-47 |
| Msa0055650 | Msa0969640 | 0.814150 | 1.783950e-51 | -8.615850e-47 |
| Msa0073820 | Msa0969640 | 0.821769 | 3.384649e-53 | -8.615850e-47 |
| Msa0091480 | Msa0969640 | 0.808642 | 2.801688e-50 | -8.615850e-47 |
| Msa0091770 | Msa0969640 | 0.806554 | 7.775742e-50 | -8.615850e-47 |
| Msa0094100 | Msa0969640 | 0.818561 | 1.838114e-52 | -8.615850e-47 |
| Msa0603680 | Msa0969640 | 0.827808 | 1.275185e-54 | -8.615850e-47 |
| Msa0621890 | Msa0969640 | 0.800183 | 1.623944e-48 | -8.615850e-47 |
| Msa0624730 | Msa0969640 | 0.804050 | 2.601575e-49 | -8.615850e-47 |
| Msa0629290 | Msa0969640 | 0.813278 | 2.775955e-51 | -8.615850e-47 |
| Msa0647220 | Msa0969640 | 0.803771 | 2.973983e-49 | -8.615850e-47 |
| Msa0657670 | Msa0969640 | 0.810914 | 9.096540e-51 | -8.615850e-47 |
| Msa0674220 | Msa0969640 | 0.812133 | 4.942580e-51 | -8.615850e-47 |
| Msa0709480 | Msa0969640 | 0.827748 | 1.317996e-54 | -8.615850e-47 |
| Msa0730180 | Msa0969640 | 0.815532 | 8.809646e-52 | -8.615850e-47 |
| Msa0748930 | Msa0969640 | 0.847452 | 1.146434e-59 | -8.615850e-47 |
| Msa0749460 | Msa0969640 | 0.811715 | 6.095831e-51 | -8.615850e-47 |
| Msa0750380 | Msa0969640 | 0.811017 | 8.637193e-51 | -8.615850e-47 |
| Msa0770430 | Msa0969640 | 0.820918 | 5.319455e-53 | -8.615850e-47 |
| Msa0789690 | Msa0969640 | 0.809344 | 1.981798e-50 | -8.615850e-47 |
| Msa0790830 | Msa0969640 | 0.826045 | 3.365228e-54 | -8.615850e-47 |
| Msa0792170 | Msa0969640 | 0.818318 | 2.086202e-52 | -8.615850e-47 |
| Msa0792510 | Msa0969640 | 0.803530 | 3.336186e-49 | -8.615850e-47 |
| Msa0805940 | Msa0969640 | 0.808693 | 2.732782e-50 | -8.615850e-47 |
| Msa0814780 | Msa0969640 | 0.801139 | 1.036701e-48 | -8.615850e-47 |
| Msa0830720 | Msa0969640 | 0.809044 | 2.298197e-50 | -8.615850e-47 |
| Msa0162030 | Msa0969640 | 0.824368 | 8.383319e-54 | -8.615850e-47 |
| Msa0162050 | Msa0969640 | 0.835244 | 1.878771e-56 | -8.615850e-47 |
| Msa0162070 | Msa0969640 | 0.835820 | 1.342870e-56 | -8.615850e-47 |
| Msa0170580 | Msa0969640 | 0.805355 | 1.389663e-49 | -8.615850e-47 |
| Msa0171780 | Msa0969640 | 0.834369 | 3.119033e-56 | -8.615850e-47 |
| Msa0171930 | Msa0969640 | 0.823200 | 1.574623e-53 | -8.615850e-47 |
| Msa0183610 | Msa0969640 | 0.818198 | 2.221104e-52 | -8.615850e-47 |
| Msa0183620 | Msa0969640 | 0.800019 | 1.754095e-48 | -8.615850e-47 |
| Msa0185700 | Msa0969640 | 0.833292 | 5.798388e-56 | -8.615850e-47 |
| Msa0207000 | Msa0969640 | 0.818612 | 1.789922e-52 | -8.615850e-47 |
| Msa0207180 | Msa0969640 | 0.801871 | 7.338927e-49 | -8.615850e-47 |
| Msa0208630 | Msa0969640 | 0.826492 | 2.633011e-54 | -8.615850e-47 |
| Msa0374070 | Msa0969640 | 0.802172 | 6.365072e-49 | -8.615850e-47 |
| Msa0423250 | Msa0969640 | 0.802471 | 5.523445e-49 | -8.615850e-47 |
| Msa0469390 | Msa0969640 | 0.801322 | 9.512250e-49 | -8.615850e-47 |
| Msa0476180 | Msa0969640 | 0.820042 | 8.452336e-53 | -8.615850e-47 |
| Msa0265820 | Msa0969640 | 0.828248 | 9.992006e-55 | -8.615850e-47 |
| Msa0269360 | Msa0969640 | 0.840391 | 8.944100e-58 | -8.615850e-47 |
| Msa0342200 | Msa0969640 | 0.831654 | 1.476518e-55 | -8.615850e-47 |
| Msa0540320 | Msa0969640 | 0.800648 | 1.305708e-48 | -8.615850e-47 |
| Msa0549740 | Msa0969640 | 0.809507 | 1.828935e-50 | -8.615850e-47 |
| Msa0563530 | Msa0969640 | 0.808881 | 2.490856e-50 | -8.615850e-47 |
| Msa0575250 | Msa0969640 | 0.809353 | 1.973762e-50 | -8.615850e-47 |
| Msa0577230 | Msa0969640 | 0.806742 | 7.097351e-50 | -8.615850e-47 |
| Msa0582110 | Msa0969640 | 0.807770 | 4.297377e-50 | -8.615850e-47 |
| Msa0583930 | Msa0969640 | 0.819664 | 1.031215e-52 | -8.615850e-47 |
| Msa0583940 | Msa0969640 | 0.802397 | 5.719251e-49 | -8.615850e-47 |
| Msa0596100 | Msa0969640 | 0.817717 | 2.852790e-52 | -8.615850e-47 |
| Msa0843690 | Msa0969640 | 0.825665 | 4.141535e-54 | -8.615850e-47 |
| Msa0890250 | Msa0969640 | 0.803162 | 3.975624e-49 | -8.615850e-47 |
| Msa0901100 | Msa0969640 | 0.841215 | 5.439620e-58 | -8.615850e-47 |
| Msa0937670 | Msa0969640 | 0.802100 | 6.583864e-49 | -8.615850e-47 |
| Msa0937940 | Msa0969640 | 0.804600 | 1.998935e-49 | -8.615850e-47 |
| Msa0969400 | Msa0969640 | 0.818180 | 2.242337e-52 | -8.615850e-47 |
| Msa0969570 | Msa0969640 | 0.900339 | 8.084371e-78 | -8.615850e-47 |
| Msa0969640 | Msa0969700 | 0.840937 | 6.436974e-58 | -8.615850e-47 |
| Msa0969640 | Msa0980440 | 0.832896 | 7.277520e-56 | -8.615850e-47 |
| Msa0969640 | Msa1008490 | 0.832151 | 1.113579e-55 | -8.615850e-47 |
| Msa0969640 | Msa1010730 | 0.800929 | 1.144408e-48 | -8.615850e-47 |
| Msa0969640 | Msa1020710 | 0.812436 | 4.243352e-51 | -8.615850e-47 |
| Msa0969640 | Msa1029320 | 0.805843 | 1.097718e-49 | -8.615850e-47 |
| Msa0969640 | Msa1038050 | 0.817151 | 3.825470e-52 | -8.615850e-47 |
| Msa0969640 | Msa1038480 | 0.806265 | 8.946640e-50 | -8.615850e-47 |
| Msa0969640 | Msa1073840 | 0.820955 | 5.218037e-53 | -8.615850e-47 |
| Msa0969640 | Msa1076680 | 0.802382 | 5.760863e-49 | -8.615850e-47 |
| Msa0969640 | Msa1084490 | 0.830658 | 2.594201e-55 | -8.615850e-47 |
| Msa0969640 | Msa1087530 | 0.835510 | 1.609170e-56 | -8.615850e-47 |
| Msa0969640 | Msa1099030 | 0.826462 | 2.676978e-54 | -8.615850e-47 |
| Msa0969640 | Msa1125780 | 0.839564 | 1.469176e-57 | -8.615850e-47 |
| Msa0969640 | Msa1125950 | 0.840860 | 6.742758e-58 | -8.615850e-47 |
| Msa0969640 | Msa1129560 | 0.815291 | 9.968484e-52 | -8.615850e-47 |
| Msa0969640 | Msa1129720 | 0.841899 | 3.591353e-58 | -8.615850e-47 |
| Msa0969640 | Msa1146150 | 0.827949 | 1.179296e-54 | -8.615850e-47 |
| Msa0969640 | Msa1161760 | 0.818795 | 1.626449e-52 | -8.615850e-47 |
| Msa0969640 | Msa1171340 | 0.823256 | 1.527370e-53 | -8.615850e-47 |
| Msa0969640 | Msa1184730 | 0.802007 | 6.882863e-49 | -8.615850e-47 |
| Msa0969640 | Msa1188210 | 0.807691 | 4.467479e-50 | -8.615850e-47 |
| Msa0969640 | Msa1190910 | 0.806625 | 7.511300e-50 | -8.615850e-47 |
| Msa0969640 | Msa1201990 | 0.821539 | 3.827394e-53 | -8.615850e-47 |
| Msa0969640 | Msa1211070 | 0.810794 | 9.653561e-51 | -8.615850e-47 |
| Msa0969640 | Msa1220230 | 0.808273 | 3.358095e-50 | -8.615850e-47 |
| Msa0969640 | Msa1229660 | 0.800651 | 1.304318e-48 | -8.615850e-47 |
| Msa0969640 | Msa1229690 | 0.831518 | 1.594970e-55 | -8.615850e-47 |
| Msa0969640 | Msa1280120 | 0.811166 | 8.019479e-51 | -8.615850e-47 |
| Msa0969640 | Msa1283770 | 0.804732 | 1.875567e-49 | -8.615850e-47 |
| Msa0969640 | Msa1310110 | 0.847264 | 1.290626e-59 | -8.615850e-47 |
| Msa0969640 | Msa1322660 | 0.811523 | 6.708971e-51 | -8.615850e-47 |
| Msa0969640 | Msa1329990 | 0.818766 | 1.651908e-52 | -8.615850e-47 |
| Msa0969640 | Msa1371960 | 0.814232 | 1.710673e-51 | -8.615850e-47 |
| Msa0969640 | Msa1373950 | 0.810910 | 9.113685e-51 | -8.615850e-47 |
| Msa0969640 | Msa1385900 | 0.828823 | 7.257029e-55 | -8.615850e-47 |
| Msa0969640 | Msa1398480 | 0.829726 | 4.380728e-55 | -8.615850e-47 |
| Msa0969640 | Msa1445000 | 0.808732 | 2.679949e-50 | -8.615850e-47 |
| Msa0969640 | Msa1456810 | 0.813213 | 2.867576e-51 | -8.615850e-47 |
| Msa0969640 | Msa1462090 | 0.806697 | 7.253639e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969640 | MtrunA17_Chr6g0449211 | 84.051 | 627 | 17 | 6 | 1 | 599 | 1 | 572 | 0.0 | 1035 |
| Msa0969640 | MtrunA17_Chr4g0037641 | 28.141 | 199 | 92 | 5 | 375 | 573 | 99 | 246 | 1.17e-19 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969640 | AT5G14460.1 | 52.733 | 622 | 179 | 12 | 1 | 599 | 11 | 540 | 0.0 | 580 |
| Msa0969640 | AT3G57150.1 | 30.151 | 199 | 88 | 5 | 375 | 573 | 92 | 239 | 2.24e-16 | 82.8 |
Find 151 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATCACTCTGTGCGGATTT+TGG | 0.099638 | 6_4:-1094402 | Msa0969640:CDS |
| TATAAAGACTTGGTTTCTTA+TGG | 0.269985 | 6_4:-1095490 | Msa0969640:intron |
| TCGCCTTGTCAAAGTGAAAA+AGG | 0.292477 | 6_4:-1097543 | Msa0969640:intron |
| TTAGCGGTTCGAGTGGGTTT+GGG | 0.298631 | 6_4:+1099360 | None:intergenic |
| TCGAGTGGGTTTGGGGAGAT+TGG | 0.300053 | 6_4:+1099368 | None:intergenic |
| GAAAGATAAGCATTATAAAA+TGG | 0.301531 | 6_4:-1099031 | Msa0969640:CDS |
| GGACGGGACTTCCTCATGTT+TGG | 0.332155 | 6_4:-1098502 | Msa0969640:CDS |
| GATAAGTTAAAGATAAGTTT+TGG | 0.332339 | 6_4:+1094079 | None:intergenic |
| GAGAAAAGGAAAAGGGGAAG+AGG | 0.335131 | 6_4:-1098631 | Msa0969640:CDS |
| CTAATTCGAATGCGAATACT+AGG | 0.339685 | 6_4:-1098903 | Msa0969640:CDS |
| TTTAGCGGTTCGAGTGGGTT+TGG | 0.343333 | 6_4:+1099359 | None:intergenic |
| CGAGTGGGTTTGGGGAGATT+GGG | 0.352164 | 6_4:+1099369 | None:intergenic |
| AAGAGGTTGTTGTTAGGAAA+TGG | 0.356970 | 6_4:+1099475 | None:intergenic |
| CTTATCTTTAACTTATCTTC+AGG | 0.360242 | 6_4:-1094073 | Msa0969640:exon |
| TTTGCACTCATTTGCAAAGT+TGG | 0.360407 | 6_4:-1098093 | Msa0969640:CDS |
| AGAAAAGGAAAAGGGGAAGA+GGG | 0.361980 | 6_4:-1098630 | Msa0969640:CDS |
| AAAACTCCTCCCTCCAATCC+TGG | 0.362557 | 6_4:-1099317 | Msa0969640:CDS |
| AGCTACGCTCTATGTCAAAT+TGG | 0.367629 | 6_4:+1095355 | None:intergenic |
| GACGGGACTTCCTCATGTTT+GGG | 0.381101 | 6_4:-1098501 | Msa0969640:CDS |
| CGTTGGCAAGTCAACAAAAC+TGG | 0.388637 | 6_4:-1097396 | Msa0969640:CDS |
| ATCTGGAAGAGGTTGTTGTT+AGG | 0.388752 | 6_4:+1099469 | None:intergenic |
| GGAGAATGGGTTGAAGAATC+TGG | 0.390566 | 6_4:+1099452 | None:intergenic |
| GAACCGGGTCGGTTTAATTC+CGG | 0.390958 | 6_4:+1099270 | None:intergenic |
| TCCTAATCAGTGTTTGGATC+AGG | 0.395285 | 6_4:-1098983 | Msa0969640:CDS |
| GTCCTCAACTCCACAACTTC+CGG | 0.401195 | 6_4:+1099111 | None:intergenic |
| TGGACTTCATTCACAGTTTG+TGG | 0.401629 | 6_4:-1097575 | Msa0969640:CDS |
| TTGAAGTGGGTATGGGGTTG+TGG | 0.412328 | 6_4:+1099413 | None:intergenic |
| AAGAGGAGGAAGAGAATGTA+TGG | 0.412854 | 6_4:-1099189 | Msa0969640:CDS |
| AGATATCAAGGGATGGTTAA+GGG | 0.418833 | 6_4:-1097227 | Msa0969640:CDS |
| CGATAAATTAACCACTGAAC+CGG | 0.422132 | 6_4:-1099289 | Msa0969640:CDS |
| TTAGAGTGACTTGTTCTAAA+GGG | 0.422161 | 6_4:-1094434 | Msa0969640:CDS |
| TGGGTTAGAGATACAGATAT+TGG | 0.425385 | 6_4:+1099504 | None:intergenic |
| AGGAAACGGAGAGTGGAGAA+TGG | 0.425542 | 6_4:+1099438 | None:intergenic |
| AGCTCGTATTGAAGTGGGTA+TGG | 0.425572 | 6_4:+1099405 | None:intergenic |
| CAGATATCAAGGGATGGTTA+AGG | 0.429332 | 6_4:-1097228 | Msa0969640:CDS |
| TAAAGATGTTAGTGAGAAGA+AGG | 0.432499 | 6_4:-1098597 | Msa0969640:CDS |
| ATGGGGTTGTGGAGAGGAAA+CGG | 0.438870 | 6_4:+1099424 | None:intergenic |
| ACTTACCAATTGAATCTCTT+CGG | 0.441065 | 6_4:+1094236 | None:intergenic |
| GTGGAAAGAGAAAAGGAAAA+GGG | 0.446810 | 6_4:-1098638 | Msa0969640:CDS |
| GACTTGGTGCGTAGAATTGT+CGG | 0.449462 | 6_4:-1093953 | Msa0969640:three_prime_UTR |
| TCGTCGTAACGAGGAACAAT+TGG | 0.452320 | 6_4:-1099145 | Msa0969640:CDS |
| CATTTATGATCTTACTAAGT+GGG | 0.454496 | 6_4:-1093913 | Msa0969640:three_prime_UTR |
| GGAAACGGAGAGTGGAGAAT+GGG | 0.454803 | 6_4:+1099439 | None:intergenic |
| AGCCATTGGATCAAGAGTTC+CGG | 0.455220 | 6_4:+1097439 | None:intergenic |
| GCCTGATCCAAACACTGATT+AGG | 0.455892 | 6_4:+1098982 | None:intergenic |
| CAGACAGCTGTTGACCTAGA+TGG | 0.457977 | 6_4:-1098136 | Msa0969640:CDS |
| ATTTATCGTTGGCCCAGGAT+TGG | 0.458959 | 6_4:+1099304 | None:intergenic |
| AAGCATATTATGGCCCTTTG+TGG | 0.460080 | 6_4:-1094003 | Msa0969640:three_prime_UTR |
| AGTTGAGGACTTTGCATAAG+AGG | 0.461084 | 6_4:-1099098 | Msa0969640:CDS |
| ACTCTTGATCCAATGGCTAC+TGG | 0.468893 | 6_4:-1097434 | Msa0969640:CDS |
| CGAATGCGAATACTAGGGTT+AGG | 0.473200 | 6_4:-1098897 | Msa0969640:CDS |
| GGAAAAGGGGAAGAGGGGTG+TGG | 0.481574 | 6_4:-1098624 | Msa0969640:CDS |
| GGTTGTTGATGATGATAAGT+TGG | 0.482315 | 6_4:-1098839 | Msa0969640:CDS |
| TTAAGAGTTCATTTCTGACT+TGG | 0.482408 | 6_4:-1093969 | Msa0969640:three_prime_UTR |
| TTTAGAGTGACTTGTTCTAA+AGG | 0.482622 | 6_4:-1094435 | Msa0969640:CDS |
| TTCAGTGGTTAATTTATCGT+TGG | 0.484449 | 6_4:+1099293 | None:intergenic |
| CGAATGAGAATGCGAATGCT+AGG | 0.484868 | 6_4:-1098762 | Msa0969640:CDS |
| TGGAAGATTGAAATTCGTCT+TGG | 0.489018 | 6_4:+1095375 | None:intergenic |
| GAAAGGTGTGGAAAGAGAAA+AGG | 0.489304 | 6_4:-1098645 | Msa0969640:CDS |
| TGTTAGTGAGAAGAAGGTAG+AGG | 0.489533 | 6_4:-1098591 | Msa0969640:CDS |
| GGGATGGTTAAGGGTTATAG+TGG | 0.489732 | 6_4:-1097218 | Msa0969640:CDS |
| TCGTCTTTGATGTGCTCCCA+TGG | 0.493556 | 6_4:+1095813 | None:intergenic |
| ATCAATAAACCAGTAGCCAT+TGG | 0.493847 | 6_4:+1097425 | None:intergenic |
| GAAAAGGAAAAGGGGAAGAG+GGG | 0.496709 | 6_4:-1098629 | Msa0969640:CDS |
| TTGCCAAATCTCCCCACAAA+AGG | 0.497675 | 6_4:+1095767 | None:intergenic |
| TGTGGAAAGAGAAAAGGAAA+AGG | 0.500002 | 6_4:-1098639 | Msa0969640:CDS |
| TGGGGTTGGTTCGCGTTTAG+CGG | 0.502102 | 6_4:+1099344 | None:intergenic |
| AAAAGTTGTATGAGAAAGCA+AGG | 0.502196 | 6_4:-1095422 | Msa0969640:CDS |
| TAGAGCGTAGCTTGGATGAC+AGG | 0.504180 | 6_4:-1095344 | Msa0969640:intron |
| TATTTACAGGTTGGGCATGC+CGG | 0.506776 | 6_4:-1097458 | Msa0969640:intron |
| CATGTTTGGGATAGTTCGCA+TGG | 0.508231 | 6_4:-1098488 | Msa0969640:CDS |
| GGTCATTCAGCGTGAGCCAT+GGG | 0.508339 | 6_4:-1095829 | Msa0969640:CDS |
| TATCGTTGGCCCAGGATTGG+AGG | 0.513364 | 6_4:+1099307 | None:intergenic |
| AATCTCTTCGGAGAGCCGTT+AGG | 0.515298 | 6_4:+1094248 | None:intergenic |
| TGCATGGGACTTTCAAGAGC+TGG | 0.515938 | 6_4:-1094114 | Msa0969640:CDS |
| TGTATGAGAAAGCAAGGAGA+GGG | 0.517131 | 6_4:-1095416 | Msa0969640:CDS |
| ATGAGTGCAAAACACGAAGT+TGG | 0.518652 | 6_4:+1098105 | None:intergenic |
| TGTGGAGAGGAAACGGAGAG+TGG | 0.518712 | 6_4:+1099431 | None:intergenic |
| CTCTTCGGAGAGCCGTTAGG+TGG | 0.519359 | 6_4:+1094251 | None:intergenic |
| AGTAACGCAGTCTCAGCATT+CGG | 0.520628 | 6_4:+1098058 | None:intergenic |
| GCTCGTATTGAAGTGGGTAT+GGG | 0.522475 | 6_4:+1099406 | None:intergenic |
| ATTTGACATAGAGCGTAGCT+TGG | 0.526109 | 6_4:-1095352 | Msa0969640:CDS |
| TCGGTTTAATTCCGGTTCAG+TGG | 0.528374 | 6_4:+1099278 | None:intergenic |
| TTATAAAATGGTGTATCAGT+TGG | 0.530647 | 6_4:-1099019 | Msa0969640:CDS |
| TAATGCTTATCTTTCTCCCA+AGG | 0.531868 | 6_4:+1099039 | None:intergenic |
| TTGTTAGGAAATGGAGATGG+TGG | 0.532437 | 6_4:+1099484 | None:intergenic |
| AAACTCCTCCCTCCAATCCT+GGG | 0.533078 | 6_4:-1099316 | Msa0969640:CDS |
| GGAAAGAGCAAACTAACAAG+TGG | 0.534816 | 6_4:+1093774 | None:intergenic |
| TGGGTTTGGGGAGATTGGGA+CGG | 0.536973 | 6_4:+1099373 | None:intergenic |
| AATATTCAGCAGATGATGCA+TGG | 0.539686 | 6_4:-1094130 | Msa0969640:CDS |
| AGGGGAGGCTACTTCAACAT+GGG | 0.540342 | 6_4:-1097183 | Msa0969640:CDS |
| AGTCAACAAAACTGGTGGAC+AGG | 0.543352 | 6_4:-1097388 | Msa0969640:intron |
| TGGGTTGAAGAATCTGGAAG+AGG | 0.545479 | 6_4:+1099458 | None:intergenic |
| TAGCGGTTCGAGTGGGTTTG+GGG | 0.545535 | 6_4:+1099361 | None:intergenic |
| ATCGTTGGCCCAGGATTGGA+GGG | 0.545981 | 6_4:+1099308 | None:intergenic |
| GGTTAATTTATCGTTGGCCC+AGG | 0.546253 | 6_4:+1099299 | None:intergenic |
| TGCCGGAACTCTTGATCCAA+TGG | 0.547199 | 6_4:-1097441 | Msa0969640:CDS |
| TCATTTATGATCTTACTAAG+TGG | 0.547227 | 6_4:-1093914 | Msa0969640:three_prime_UTR |
| GGTTTATTGATTGTTTGCGT+TGG | 0.547808 | 6_4:-1097413 | Msa0969640:CDS |
| GGATGGTTAAGGGTTATAGT+GGG | 0.548141 | 6_4:-1097217 | Msa0969640:CDS |
| GCTCTCCGAAGAGATTCAAT+TGG | 0.548644 | 6_4:-1094241 | Msa0969640:intron |
| TATGATCTTACTAAGTGGGT+CGG | 0.549768 | 6_4:-1093909 | Msa0969640:three_prime_UTR |
| GTTGAGGACTTTGCATAAGA+GGG | 0.560674 | 6_4:-1099097 | Msa0969640:CDS |
| TCGTAACGAGGAACAATTGG+TGG | 0.561729 | 6_4:-1099142 | Msa0969640:CDS |
| TGAGGAGAATGAGAAAGGTG+TGG | 0.562921 | 6_4:-1098657 | Msa0969640:intron |
| GACTTTGCATAAGAGGGAAG+AGG | 0.565594 | 6_4:-1099091 | Msa0969640:CDS |
| TTGTAGTTGCGCCCACCTAA+CGG | 0.568022 | 6_4:-1094263 | Msa0969640:intron |
| ACTTTAATAGCAGAGAACAT+AGG | 0.569137 | 6_4:+1095738 | None:intergenic |
| AGTTGGAACACAGACCATCT+AGG | 0.574332 | 6_4:+1098122 | None:intergenic |
| GGACTTTCAAGAGCTGGAAG+AGG | 0.574710 | 6_4:-1094108 | Msa0969640:CDS |
| TACCGGAAGTTGTGGAGTTG+AGG | 0.577640 | 6_4:-1099113 | Msa0969640:CDS |
| TGTTAGGAAATGGAGATGGT+GGG | 0.579033 | 6_4:+1099485 | None:intergenic |
| GTGGGTATGGGGTTGTGGAG+AGG | 0.579761 | 6_4:+1099418 | None:intergenic |
| AGGTCATTCAGCGTGAGCCA+TGG | 0.580500 | 6_4:-1095830 | Msa0969640:CDS |
| ACAATTGGTGGAGATGATAC+CGG | 0.583536 | 6_4:-1099130 | Msa0969640:CDS |
| TGGAAAGAGAAAAGGAAAAG+GGG | 0.584024 | 6_4:-1098637 | Msa0969640:CDS |
| AGGGTTAGGAACATGAAAGT+TGG | 0.586439 | 6_4:-1098883 | Msa0969640:CDS |
| TCGCGTTTAGCGGTTCGAGT+GGG | 0.588228 | 6_4:+1099354 | None:intergenic |
| GTATGAGAAAGCAAGGAGAG+GGG | 0.588760 | 6_4:-1095415 | Msa0969640:CDS |
| TAGGGGAGGCTACTTCAACA+TGG | 0.596980 | 6_4:-1097184 | Msa0969640:CDS |
| GAAAATACTATAACAAGAGG+AGG | 0.597987 | 6_4:-1099203 | Msa0969640:CDS |
| CTCGTATTGAAGTGGGTATG+GGG | 0.600256 | 6_4:+1099407 | None:intergenic |
| GAAAGAGCAAACTAACAAGT+GGG | 0.600975 | 6_4:+1093775 | None:intergenic |
| AGAGAAAATACTATAACAAG+AGG | 0.602328 | 6_4:-1099206 | Msa0969640:CDS |
| GGAGATGATACCGGAAGTTG+TGG | 0.602422 | 6_4:-1099121 | Msa0969640:CDS |
| ATATTCAGCAGATGATGCAT+GGG | 0.609401 | 6_4:-1094129 | Msa0969640:CDS |
| ATGCTTCAGATATCAAGGGA+TGG | 0.611716 | 6_4:-1097234 | Msa0969640:intron |
| TCTTCGGAGAGCCGTTAGGT+GGG | 0.612060 | 6_4:+1094252 | None:intergenic |
| TATGAACAATTAGATTGACC+AGG | 0.612218 | 6_4:+1098949 | None:intergenic |
| GAATGAGAATGCGAATGCTA+GGG | 0.615270 | 6_4:-1098761 | Msa0969640:CDS |
| ATGTTTGGGATAGTTCGCAT+GGG | 0.626322 | 6_4:-1098487 | Msa0969640:CDS |
| GATGGTTAAGGGTTATAGTG+GGG | 0.629063 | 6_4:-1097216 | Msa0969640:CDS |
| TGGCAAGTCAACAAAACTGG+TGG | 0.632066 | 6_4:-1097393 | Msa0969640:CDS |
| TTGTATGAGAAAGCAAGGAG+AGG | 0.634679 | 6_4:-1095417 | Msa0969640:CDS |
| TTGAAGTAGCCTCCCCTAAG+CGG | 0.636178 | 6_4:+1097189 | None:intergenic |
| TGATGATCATCGTCGTAACG+AGG | 0.638024 | 6_4:-1099154 | Msa0969640:CDS |
| ATGATGAGCTCGTATTGAAG+TGG | 0.641638 | 6_4:+1099399 | None:intergenic |
| TAATTCGAATGCGAATACTA+GGG | 0.653259 | 6_4:-1098902 | Msa0969640:CDS |
| AGAGGAGGAAGAGAATGTAT+GGG | 0.662464 | 6_4:-1099188 | Msa0969640:CDS |
| GTTACGACGATGATCATCAT+CGG | 0.663156 | 6_4:+1099158 | None:intergenic |
| TTAATAGCAGAGAACATAGG+TGG | 0.666040 | 6_4:+1095741 | None:intergenic |
| TTGTTGTTAGGAAATGGAGA+TGG | 0.672758 | 6_4:+1099481 | None:intergenic |
| GAACCGGAATTAAACCGACC+CGG | 0.676094 | 6_4:-1099273 | Msa0969640:CDS |
| TGCGAACTATCCCAAACATG+AGG | 0.676995 | 6_4:+1098491 | None:intergenic |
| TGATGAGCTCGTATTGAAGT+GGG | 0.689951 | 6_4:+1099400 | None:intergenic |
| GTTGGCCCAGGATTGGAGGG+AGG | 0.700888 | 6_4:+1099311 | None:intergenic |
| AATCTCCCCACAAAAGGACA+AGG | 0.707724 | 6_4:+1095773 | None:intergenic |
| GCTGAGACTGCGTTACTGAG+TGG | 0.708499 | 6_4:-1098052 | Msa0969640:intron |
| AAAGAGCAAACTAACAAGTG+GGG | 0.714316 | 6_4:+1093776 | None:intergenic |
| ATGGGAGCACATCAAAGACG+AGG | 0.727299 | 6_4:-1095811 | Msa0969640:CDS |
| ATATATTCGATCACTCTGTG+CGG | 0.736006 | 6_4:-1094409 | Msa0969640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATTATATATATA+TGG | + | chr6_4:1096331-1096350 | None:intergenic | 0.0% |
| !!! | TATTTAATATATGCAAATTT+TGG | - | chr6_4:1095357-1095376 | Msa0969640:CDS | 10.0% |
| !!! | TTAAAGTATTAATTATTTAC+AGG | - | chr6_4:1095821-1095840 | Msa0969640:CDS | 10.0% |
| !!! | TTTAATTAAAATTTTTGATC+TGG | - | chr6_4:1096005-1096024 | Msa0969640:intron | 10.0% |
| !! | ATAATTTATTAATCCATTAA+AGG | - | chr6_4:1096582-1096601 | Msa0969640:intron | 10.0% |
| !!! | GAATTTTTACAAAAAAATAT+TGG | - | chr6_4:1096914-1096933 | Msa0969640:intron | 10.0% |
| !!! | TTTCAAACATAATTTTTATA+AGG | + | chr6_4:1098755-1098774 | None:intergenic | 10.0% |
| !! | ATAAATTATCTTTGACAAAA+TGG | + | chr6_4:1096571-1096590 | None:intergenic | 15.0% |
| !! | TATCATATTAATAAACACAT+AGG | + | chr6_4:1097169-1097188 | None:intergenic | 15.0% |
| !! | TATTAATATGATTTGATGTT+TGG | - | chr6_4:1097203-1097222 | Msa0969640:CDS | 15.0% |
| !!! | TTGATTTTAACTTCTATTAA+TGG | + | chr6_4:1098035-1098054 | None:intergenic | 15.0% |
| !!! | TATATATTTTTTCAAACTAG+TGG | + | chr6_4:1098060-1098079 | None:intergenic | 15.0% |
| !! | ATATAAAATAATAATGATGG+TGG | - | chr6_4:1098075-1098094 | Msa0969640:CDS | 15.0% |
| !! | TATAAAATAATAATGATGGT+GGG | - | chr6_4:1098076-1098095 | Msa0969640:CDS | 15.0% |
| !! | TTTCTACCATTTAATTATTT+AGG | + | chr6_4:1098255-1098274 | None:intergenic | 15.0% |
| !! | AAAGTATAACAAATAAATCA+GGG | + | chr6_4:1098818-1098837 | None:intergenic | 15.0% |
| !!! | AAAAGTATAACAAATAAATC+AGG | + | chr6_4:1098819-1098838 | None:intergenic | 15.0% |
| !! | AAAATTAAAAATTCCACAAA+GGG | + | chr6_4:1099305-1099324 | None:intergenic | 15.0% |
| !! | TAAAATTAAAAATTCCACAA+AGG | + | chr6_4:1099306-1099325 | None:intergenic | 15.0% |
| !! | GAAAGATAAGCATTATAAAA+TGG | - | chr6_4:1094261-1094280 | Msa0969640:intron | 20.0% |
| !!! | AAATCTTTGTTTTTTTTGTG+TGG | - | chr6_4:1095555-1095574 | Msa0969640:intron | 20.0% |
| !! | CAACATTATGTTCTTAAATA+TGG | - | chr6_4:1095615-1095634 | Msa0969640:intron | 20.0% |
| !!! | ATACTTAATAGTGTTTCTTT+TGG | - | chr6_4:1095647-1095666 | Msa0969640:intron | 20.0% |
| !!! | TACTTAATAGTGTTTCTTTT+GGG | - | chr6_4:1095648-1095667 | Msa0969640:intron | 20.0% |
| !!! | ACACTTAATTTTTACTTTCA+TGG | + | chr6_4:1095682-1095701 | None:intergenic | 20.0% |
| !! | AAAAATTAAGTGTGAATTTG+TGG | - | chr6_4:1095689-1095708 | Msa0969640:intron | 20.0% |
| !! | AGTATTAATTATTTACAGGT+TGG | - | chr6_4:1095825-1095844 | Msa0969640:CDS | 20.0% |
| !! | GTATTAATTATTTACAGGTT+GGG | - | chr6_4:1095826-1095845 | Msa0969640:CDS | 20.0% |
| !! | CACATTATATAATTAGCTAT+TGG | - | chr6_4:1096183-1096202 | Msa0969640:intron | 20.0% |
| !! | TTATATAATTAGCTATTGGT+TGG | - | chr6_4:1096187-1096206 | Msa0969640:intron | 20.0% |
| !! | CATACACAAGTATTATTTAT+TGG | - | chr6_4:1097280-1097299 | Msa0969640:intron | 20.0% |
| !! | AAAATTAAATGGTTCAAGAA+TGG | + | chr6_4:1097591-1097610 | None:intergenic | 20.0% |
| !! | ACGAAACTATGAAAATTAAA+TGG | + | chr6_4:1097602-1097621 | None:intergenic | 20.0% |
| !!! | TAAATATGTCATTTCAGAAA+TGG | - | chr6_4:1097671-1097690 | Msa0969640:intron | 20.0% |
| !!! | AAGAAAAATGTTGATTACAT+AGG | + | chr6_4:1097726-1097745 | None:intergenic | 20.0% |
| !! | TCATGTCCTAAATAATTAAA+TGG | - | chr6_4:1098246-1098265 | Msa0969640:intron | 20.0% |
| !!! | AACAAGTTTTGTAATAAAGA+TGG | - | chr6_4:1098430-1098449 | Msa0969640:intron | 20.0% |
| !!! | ACAAGTTTTGTAATAAAGAT+GGG | - | chr6_4:1098431-1098450 | Msa0969640:intron | 20.0% |
| !!! | TCTAAAAATCAAATTTTGTC+TGG | + | chr6_4:1098843-1098862 | None:intergenic | 20.0% |
| !!! | GATAAGTTAAAGATAAGTTT+TGG | + | chr6_4:1099216-1099235 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTAAGCATATTA+TGG | - | chr6_4:1099279-1099298 | Msa0969640:CDS | 20.0% |
| !!! | CTTGTTATAGTATTTTCTCT+TGG | + | chr6_4:1094086-1094105 | None:intergenic | 25.0% |
| ! | AGAGAAAATACTATAACAAG+AGG | - | chr6_4:1094086-1094105 | Msa0969640:CDS | 25.0% |
| ! | TTATAAAATGGTGTATCAGT+TGG | - | chr6_4:1094273-1094292 | Msa0969640:intron | 25.0% |
| !!! | TGATAAGTTGATGTTTTTTG+AGG | - | chr6_4:1094617-1094636 | Msa0969640:intron | 25.0% |
| !!! | CTTTTGATTAACAAACCTAA+AGG | - | chr6_4:1094834-1094853 | Msa0969640:intron | 25.0% |
| ! | GCTATTTACATTTCTTATTG+TGG | - | chr6_4:1094867-1094886 | Msa0969640:intron | 25.0% |
| !!! | TTGCATGTTGATTTACTTTT+GGG | - | chr6_4:1095303-1095322 | Msa0969640:intron | 25.0% |
| ! | TGATCAATGAAAATGAAATC+AGG | + | chr6_4:1095514-1095533 | None:intergenic | 25.0% |
| ! | TTTCATTGATCACATAATGT+AGG | - | chr6_4:1095522-1095541 | Msa0969640:intron | 25.0% |
| ! | TGAAATATATATGTGTACTG+TGG | + | chr6_4:1095782-1095801 | None:intergenic | 25.0% |
| ! | AAACAAAAACTGTACTATAG+TGG | + | chr6_4:1095987-1096006 | None:intergenic | 25.0% |
| !! | TTTTTATGCTTCAGATATCA+AGG | - | chr6_4:1096053-1096072 | Msa0969640:intron | 25.0% |
| !! | TTTTATGCTTCAGATATCAA+GGG | - | chr6_4:1096054-1096073 | Msa0969640:intron | 25.0% |
| ! | TATTATATATATATGGCGCT+AGG | + | chr6_4:1096324-1096343 | None:intergenic | 25.0% |
| !!! | CTCTATTTTAAAGTCATGAT+AGG | + | chr6_4:1096481-1096500 | None:intergenic | 25.0% |
| !!! | ATCATGACTTTAAAATAGAG+AGG | - | chr6_4:1096481-1096500 | Msa0969640:intron | 25.0% |
| !! | TTTGAAATTTGAATTGGGTT+TGG | - | chr6_4:1097005-1097024 | Msa0969640:intron | 25.0% |
| ! | TTGAAATTTGAATTGGGTTT+GGG | - | chr6_4:1097006-1097025 | Msa0969640:intron | 25.0% |
| ! | CGGTTTCAATATATTGAAAT+TGG | - | chr6_4:1097234-1097253 | Msa0969640:intron | 25.0% |
| ! | TTTCGTTAAAGTTATGAAGT+TGG | - | chr6_4:1097616-1097635 | Msa0969640:intron | 25.0% |
| !! | GTTTGTCATTTATAAAGACT+TGG | - | chr6_4:1097792-1097811 | Msa0969640:intron | 25.0% |
| !! | TATAAAGACTTGGTTTCTTA+TGG | - | chr6_4:1097802-1097821 | Msa0969640:intron | 25.0% |
| ! | CAACTTAAATCATGATTCAA+AGG | + | chr6_4:1098011-1098030 | None:intergenic | 25.0% |
| ! | CATTTCTCAAAATAAATGGA+GGG | + | chr6_4:1098103-1098122 | None:intergenic | 25.0% |
| ! | TCTCCATTTCTCAAAATAAA+TGG | + | chr6_4:1098107-1098126 | None:intergenic | 25.0% |
| ! | TTGATTCATTCATCAACAAT+TGG | - | chr6_4:1098154-1098173 | Msa0969640:intron | 25.0% |
| !! | AATTATTTAGGACATGAGAA+GGG | + | chr6_4:1098243-1098262 | None:intergenic | 25.0% |
| !! | TAATTATTTAGGACATGAGA+AGG | + | chr6_4:1098244-1098263 | None:intergenic | 25.0% |
| ! | ATCTTGTGTTTATTGTATGT+TGG | + | chr6_4:1098360-1098379 | None:intergenic | 25.0% |
| ! | CATACAATAAACACAAGATT+AGG | - | chr6_4:1098361-1098380 | Msa0969640:intron | 25.0% |
| ! | TGGTTTATTCTTCATTGAAA+CGG | + | chr6_4:1098630-1098649 | None:intergenic | 25.0% |
| !!! | TGTAGTTGATTTGTTCATTT+TGG | - | chr6_4:1098792-1098811 | Msa0969640:CDS | 25.0% |
| !! | CTTATCTTTAACTTATCTTC+AGG | - | chr6_4:1099219-1099238 | Msa0969640:CDS | 25.0% |
| ! | GCCATAATATGCTTAAAAAT+TGG | + | chr6_4:1099283-1099302 | None:intergenic | 25.0% |
| ! | TCATTTATGATCTTACTAAG+TGG | - | chr6_4:1099378-1099397 | Msa0969640:CDS | 25.0% |
| ! | CATTTATGATCTTACTAAGT+GGG | - | chr6_4:1099379-1099398 | Msa0969640:CDS | 25.0% |
| TTCAGTGGTTAATTTATCGT+TGG | + | chr6_4:1094002-1094021 | None:intergenic | 30.0% | |
| !! | AAGTTCAAATTTTGACGAAC+CGG | + | chr6_4:1094041-1094060 | None:intergenic | 30.0% |
| GAAAATACTATAACAAGAGG+AGG | - | chr6_4:1094089-1094108 | Msa0969640:CDS | 30.0% | |
| !! | ATGATGCTTTTTGTTATCCT+TGG | - | chr6_4:1094236-1094255 | Msa0969640:intron | 30.0% |
| !! | TGATGCTTTTTGTTATCCTT+GGG | - | chr6_4:1094237-1094256 | Msa0969640:intron | 30.0% |
| ! | GTATTTTCCTAATCAGTGTT+TGG | - | chr6_4:1094303-1094322 | Msa0969640:intron | 30.0% |
| TATGAACAATTAGATTGACC+AGG | + | chr6_4:1094346-1094365 | None:intergenic | 30.0% | |
| TAATTCGAATGCGAATACTA+GGG | - | chr6_4:1094390-1094409 | Msa0969640:CDS | 30.0% | |
| !!! | ACATGAAAGTTGGTGTTTTT+AGG | - | chr6_4:1094419-1094438 | Msa0969640:CDS | 30.0% |
| !!! | CATGAAAGTTGGTGTTTTTA+GGG | - | chr6_4:1094420-1094439 | Msa0969640:CDS | 30.0% |
| !!! | TTGGTGTTTTTTGATGAGAA+TGG | - | chr6_4:1094472-1094491 | Msa0969640:intron | 30.0% |
| !!! | TGGTGTTTTTTGATGAGAAT+GGG | - | chr6_4:1094473-1094492 | Msa0969640:intron | 30.0% |
| !!! | TTTTTTGAGGAGAATGAGAA+AGG | - | chr6_4:1094630-1094649 | Msa0969640:intron | 30.0% |
| TAAAGATGTTAGTGAGAAGA+AGG | - | chr6_4:1094695-1094714 | Msa0969640:intron | 30.0% | |
| !!! | TAAGGTTTTGAATGTGAAGA+AGG | - | chr6_4:1094731-1094750 | Msa0969640:intron | 30.0% |
| AAGAAATGTAAATAGCGAAG+TGG | + | chr6_4:1094863-1094882 | None:intergenic | 30.0% | |
| ! | AAACCTATTTTGCATTGTAG+CGG | - | chr6_4:1095074-1095093 | Msa0969640:intron | 30.0% |
| !!! | CTTGCATGTTGATTTACTTT+TGG | - | chr6_4:1095302-1095321 | Msa0969640:intron | 30.0% |
| !! | TAACCTTTTTCACTTTGACA+AGG | + | chr6_4:1095755-1095774 | None:intergenic | 30.0% |
| AGAAAAACAGATTAACTCAC+TGG | + | chr6_4:1096146-1096165 | None:intergenic | 30.0% | |
| ! | TACATTTGAAGCAATGCAAT+AGG | + | chr6_4:1096217-1096236 | None:intergenic | 30.0% |
| TTGCATTGCTTCAAATGTAA+AGG | - | chr6_4:1096218-1096237 | Msa0969640:intron | 30.0% | |
| ! | TAGAACTATTCTGAGAACTA+TGG | + | chr6_4:1096408-1096427 | None:intergenic | 30.0% |
| !! | ATAGGAGAAAGTGTTATTTC+AGG | + | chr6_4:1096463-1096482 | None:intergenic | 30.0% |
| ! | ATTTGATTTCTCACTGATTG+CGG | - | chr6_4:1096510-1096529 | Msa0969640:intron | 30.0% |
| GTCTAACTATGATCTATCTA+CGG | + | chr6_4:1096549-1096568 | None:intergenic | 30.0% | |
| !! | TTGTCTTATTTGTTCGTACT+TGG | - | chr6_4:1096871-1096890 | Msa0969640:intron | 30.0% |
| ! | TCTTGCAGATTTCTTTTGTT+TGG | - | chr6_4:1096979-1096998 | Msa0969640:intron | 30.0% |
| !! | CTTGCAGATTTCTTTTGTTT+GGG | - | chr6_4:1096980-1096999 | Msa0969640:intron | 30.0% |
| ! | TGGGTGTTTGAAATTTGAAT+TGG | - | chr6_4:1096999-1097018 | Msa0969640:intron | 30.0% |
| ! | GGGTGTTTGAAATTTGAATT+GGG | - | chr6_4:1097000-1097019 | Msa0969640:intron | 30.0% |
| GATCTGTTGAATTTGTAAGA+TGG | - | chr6_4:1097090-1097109 | Msa0969640:intron | 30.0% | |
| TGAGTCACATTACAATGATT+TGG | + | chr6_4:1097343-1097362 | None:intergenic | 30.0% | |
| !!! | CATGCAATTTTTTCACTCAT+AGG | - | chr6_4:1097425-1097444 | Msa0969640:CDS | 30.0% |
| ACTTTAATAGCAGAGAACAT+AGG | + | chr6_4:1097557-1097576 | None:intergenic | 30.0% | |
| AAAAAGCAGTGATGATTGTA+AGG | + | chr6_4:1097836-1097855 | None:intergenic | 30.0% | |
| !!! | CATCACTGCTTTTTTATAGT+TGG | - | chr6_4:1097842-1097861 | Msa0969640:intron | 30.0% |
| AAAAGTTGTATGAGAAAGCA+AGG | - | chr6_4:1097870-1097889 | Msa0969640:intron | 30.0% | |
| TCATGATTCAAAGGCAAAAA+GGG | + | chr6_4:1098002-1098021 | None:intergenic | 30.0% | |
| ATCATGATTCAAAGGCAAAA+AGG | + | chr6_4:1098003-1098022 | None:intergenic | 30.0% | |
| CCATTTCTCAAAATAAATGG+AGG | + | chr6_4:1098104-1098123 | None:intergenic | 30.0% | |
| !!! | CCTCCATTTATTTTGAGAAA+TGG | - | chr6_4:1098101-1098120 | Msa0969640:CDS | 30.0% |
| ! | ATTATTTAGGACATGAGAAG+GGG | + | chr6_4:1098242-1098261 | None:intergenic | 30.0% |
| !!! | GTTGGGATTTTTTTTGTTGT+TGG | - | chr6_4:1098291-1098310 | Msa0969640:intron | 30.0% |
| !! | GGTTTTGTAATATCTGCTAA+TGG | - | chr6_4:1098312-1098331 | Msa0969640:intron | 30.0% |
| ATAAACACAAGATTAGGAGA+TGG | - | chr6_4:1098367-1098386 | Msa0969640:intron | 30.0% | |
| !!! | TAGGAGATGGATTTTTTATG+CGG | - | chr6_4:1098380-1098399 | Msa0969640:intron | 30.0% |
| ! | TTTTTATGCGGGTTTTTGAT+AGG | - | chr6_4:1098392-1098411 | Msa0969640:intron | 30.0% |
| CAAGTTTACAAACTAATGGT+TGG | + | chr6_4:1098494-1098513 | None:intergenic | 30.0% | |
| CTCACAAGTTTACAAACTAA+TGG | + | chr6_4:1098498-1098517 | None:intergenic | 30.0% | |
| CTAAGTTAGTTATTGTCTGT+AGG | - | chr6_4:1098523-1098542 | Msa0969640:CDS | 30.0% | |
| TATCTCAGAGAAATTAAACG+TGG | + | chr6_4:1098650-1098669 | None:intergenic | 30.0% | |
| !! | GTTTAATTTCTCTGAGATAC+TGG | - | chr6_4:1098651-1098670 | Msa0969640:CDS | 30.0% |
| !! | TTTAGAGTGACTTGTTCTAA+AGG | - | chr6_4:1098857-1098876 | Msa0969640:CDS | 30.0% |
| !! | TTAGAGTGACTTGTTCTAAA+GGG | - | chr6_4:1098858-1098877 | Msa0969640:CDS | 30.0% |
| ACTTACCAATTGAATCTCTT+CGG | + | chr6_4:1099059-1099078 | None:intergenic | 30.0% | |
| GAATTGAATTGAAGGTCAAT+GGG | + | chr6_4:1099089-1099108 | None:intergenic | 30.0% | |
| TGAATTGAATTGAAGGTCAA+TGG | + | chr6_4:1099090-1099109 | None:intergenic | 30.0% | |
| TCACTCTTGAATTGAATTGA+AGG | + | chr6_4:1099097-1099116 | None:intergenic | 30.0% | |
| TTAAGAGTTCATTTCTGACT+TGG | - | chr6_4:1099323-1099342 | Msa0969640:CDS | 30.0% | |
| ! | TGGGTTAGAGATACAGATAT+TGG | + | chr6_4:1093791-1093810 | None:intergenic | 35.0% |
| ! | TTGTTGTTAGGAAATGGAGA+TGG | + | chr6_4:1093814-1093833 | None:intergenic | 35.0% |
| ! | AAGAGGTTGTTGTTAGGAAA+TGG | + | chr6_4:1093820-1093839 | None:intergenic | 35.0% |
| CGATAAATTAACCACTGAAC+CGG | - | chr6_4:1094003-1094022 | Msa0969640:three_prime_UTR | 35.0% | |
| !! | AGTTCAAATTTTGACGAACC+GGG | + | chr6_4:1094040-1094059 | None:intergenic | 35.0% |
| TAATGCTTATCTTTCTCCCA+AGG | + | chr6_4:1094256-1094275 | None:intergenic | 35.0% | |
| CTAATTCGAATGCGAATACT+AGG | - | chr6_4:1094389-1094408 | Msa0969640:CDS | 35.0% | |
| !!! | TGGTGTTTTTAGGGAGAATA+AGG | - | chr6_4:1094429-1094448 | Msa0969640:CDS | 35.0% |
| !!! | TGTTTTTAGGGAGAATAAGG+AGG | - | chr6_4:1094432-1094451 | Msa0969640:CDS | 35.0% |
| !! | GGTTGTTGATGATGATAAGT+TGG | - | chr6_4:1094453-1094472 | Msa0969640:intron | 35.0% |
| !!! | AGCAAGAAAGTTGGTGTTTT+TGG | - | chr6_4:1094559-1094578 | Msa0969640:intron | 35.0% |
| !!! | AAAGTTGGTGTTTTTGGTGT+TGG | - | chr6_4:1094565-1094584 | Msa0969640:intron | 35.0% |
| !!! | AAGTTGGTGTTTTTGGTGTT+GGG | - | chr6_4:1094566-1094585 | Msa0969640:intron | 35.0% |
| TGTGGAAAGAGAAAAGGAAA+AGG | - | chr6_4:1094653-1094672 | Msa0969640:intron | 35.0% | |
| GTGGAAAGAGAAAAGGAAAA+GGG | - | chr6_4:1094654-1094673 | Msa0969640:intron | 35.0% | |
| TGGAAAGAGAAAAGGAAAAG+GGG | - | chr6_4:1094655-1094674 | Msa0969640:intron | 35.0% | |
| !!! | GAAGGTAGAGGAGTTTTTTA+AGG | - | chr6_4:1094713-1094732 | Msa0969640:intron | 35.0% |
| TAGCTACTATTTGACAACAC+TGG | + | chr6_4:1094917-1094936 | None:intergenic | 35.0% | |
| TTGTTTAATAGCTGCTATCG+TGG | - | chr6_4:1095016-1095035 | Msa0969640:intron | 35.0% | |
| ATTCCGCTACAATGCAAAAT+AGG | + | chr6_4:1095080-1095099 | None:intergenic | 35.0% | |
| TTTGCACTCATTTGCAAAGT+TGG | - | chr6_4:1095199-1095218 | Msa0969640:intron | 35.0% | |
| GATGTCATTCTCATTGAAAG+TGG | + | chr6_4:1095428-1095447 | None:intergenic | 35.0% | |
| ATTAAGTGTGAATTTGTGGC+AGG | - | chr6_4:1095693-1095712 | Msa0969640:intron | 35.0% | |
| ATCAATAAACCAGTAGCCAT+TGG | + | chr6_4:1095870-1095889 | None:intergenic | 35.0% | |
| ! | GGTTTATTGATTGTTTGCGT+TGG | - | chr6_4:1095879-1095898 | Msa0969640:intron | 35.0% |
| CCAGTACTTAGTACTCAAAT+GGG | + | chr6_4:1095956-1095975 | None:intergenic | 35.0% | |
| TCCAGTACTTAGTACTCAAA+TGG | + | chr6_4:1095957-1095976 | None:intergenic | 35.0% | |
| ! | AAACTGTACTATAGTGGAAC+AGG | + | chr6_4:1095981-1096000 | None:intergenic | 35.0% |
| AGATATCAAGGGATGGTTAA+GGG | - | chr6_4:1096065-1096084 | Msa0969640:intron | 35.0% | |
| ! | TTTGATTTCTCACTGATTGC+GGG | - | chr6_4:1096511-1096530 | Msa0969640:intron | 35.0% |
| ATTTGTTCGTACTTGGCTAT+TGG | - | chr6_4:1096878-1096897 | Msa0969640:intron | 35.0% | |
| !!! | ATTCAGCCGGTTTTAGTTAT+TGG | + | chr6_4:1097068-1097087 | None:intergenic | 35.0% |
| TTCAACAGATCAAATTCAGC+CGG | + | chr6_4:1097081-1097100 | None:intergenic | 35.0% | |
| GTTGAATTTGTAAGATGGTG+AGG | - | chr6_4:1097095-1097114 | Msa0969640:intron | 35.0% | |
| ATGATTTGATGTTTGGACCT+TGG | - | chr6_4:1097210-1097229 | Msa0969640:CDS | 35.0% | |
| TGATTTGATGTTTGGACCTT+GGG | - | chr6_4:1097211-1097230 | Msa0969640:CDS | 35.0% | |
| !! | GAAAAGTATCAATTCAAGCC+TGG | - | chr6_4:1097307-1097326 | Msa0969640:intron | 35.0% |
| ! | TGATTTGGATGCATTTATCC+AGG | + | chr6_4:1097328-1097347 | None:intergenic | 35.0% |
| TGTGACTCATAAGCAGAATT+AGG | - | chr6_4:1097354-1097373 | Msa0969640:intron | 35.0% | |
| GAATGACCTACATATTAAGC+TGG | + | chr6_4:1097451-1097470 | None:intergenic | 35.0% | |
| TTAATAGCAGAGAACATAGG+TGG | + | chr6_4:1097554-1097573 | None:intergenic | 35.0% | |
| !!! | CACTGCTTTTTTATAGTTGG+AGG | - | chr6_4:1097845-1097864 | Msa0969640:intron | 35.0% |
| TGGAAGATTGAAATTCGTCT+TGG | + | chr6_4:1097920-1097939 | None:intergenic | 35.0% | |
| CATGATTCAAAGGCAAAAAG+GGG | + | chr6_4:1098001-1098020 | None:intergenic | 35.0% | |
| CAGTTTATGTTTCACGAGTA+CGG | + | chr6_4:1098134-1098153 | None:intergenic | 35.0% | |
| AACTCCTCAATGTAGAAAGT+TGG | - | chr6_4:1098273-1098292 | Msa0969640:intron | 35.0% | |
| ACTCCTCAATGTAGAAAGTT+GGG | - | chr6_4:1098274-1098293 | Msa0969640:intron | 35.0% | |
| AATCCCAACTTTCTACATTG+AGG | + | chr6_4:1098280-1098299 | None:intergenic | 35.0% | |
| !! | ATGGAATGATTGTTAGCCTT+TGG | - | chr6_4:1098331-1098350 | Msa0969640:intron | 35.0% |
| !! | TGGAATGATTGTTAGCCTTT+GGG | - | chr6_4:1098332-1098351 | Msa0969640:intron | 35.0% |
| !!! | AGGAGATGGATTTTTTATGC+GGG | - | chr6_4:1098381-1098400 | Msa0969640:intron | 35.0% |
| TGTGCTATAGTTATTGTGAC+AGG | - | chr6_4:1098456-1098475 | Msa0969640:intron | 35.0% | |
| GTGCTATAGTTATTGTGACA+GGG | - | chr6_4:1098457-1098476 | Msa0969640:intron | 35.0% | |
| AGTTAGTTATTGTCTGTAGG+AGG | - | chr6_4:1098526-1098545 | Msa0969640:CDS | 35.0% | |
| TAACAGCTTTGCGCTTATAA+TGG | - | chr6_4:1098676-1098695 | Msa0969640:intron | 35.0% | |
| ATATATTCGATCACTCTGTG+CGG | - | chr6_4:1098883-1098902 | Msa0969640:CDS | 35.0% | |
| CTGTAATGAAATTCTTCTCC+AGG | - | chr6_4:1099137-1099156 | Msa0969640:CDS | 35.0% | |
| AATATTCAGCAGATGATGCA+TGG | - | chr6_4:1099162-1099181 | Msa0969640:CDS | 35.0% | |
| ATATTCAGCAGATGATGCAT+GGG | - | chr6_4:1099163-1099182 | Msa0969640:CDS | 35.0% | |
| ! | GACTTGCAGTTTTCTTTTTC+TGG | - | chr6_4:1099241-1099260 | Msa0969640:CDS | 35.0% |
| TATGATCTTACTAAGTGGGT+CGG | - | chr6_4:1099383-1099402 | Msa0969640:CDS | 35.0% | |
| TGTTAGGAAATGGAGATGGT+GGG | + | chr6_4:1093810-1093829 | None:intergenic | 40.0% | |
| TTGTTAGGAAATGGAGATGG+TGG | + | chr6_4:1093811-1093830 | None:intergenic | 40.0% | |
| ! | ATCTGGAAGAGGTTGTTGTT+AGG | + | chr6_4:1093826-1093845 | None:intergenic | 40.0% |
| TGATGAGCTCGTATTGAAGT+GGG | + | chr6_4:1093895-1093914 | None:intergenic | 40.0% | |
| ATGATGAGCTCGTATTGAAG+TGG | + | chr6_4:1093896-1093915 | None:intergenic | 40.0% | |
| AAGAGGAGGAAGAGAATGTA+TGG | - | chr6_4:1094103-1094122 | Msa0969640:CDS | 40.0% | |
| AGAGGAGGAAGAGAATGTAT+GGG | - | chr6_4:1094104-1094123 | Msa0969640:CDS | 40.0% | |
| GTTACGACGATGATCATCAT+CGG | + | chr6_4:1094137-1094156 | None:intergenic | 40.0% | |
| ACAATTGGTGGAGATGATAC+CGG | - | chr6_4:1094162-1094181 | Msa0969640:intron | 40.0% | |
| AGTTGAGGACTTTGCATAAG+AGG | - | chr6_4:1094194-1094213 | Msa0969640:intron | 40.0% | |
| GTTGAGGACTTTGCATAAGA+GGG | - | chr6_4:1094195-1094214 | Msa0969640:intron | 40.0% | |
| TCCTAATCAGTGTTTGGATC+AGG | - | chr6_4:1094309-1094328 | Msa0969640:intron | 40.0% | |
| !!! | GATCAGGCTTTTTTGAAACC+TGG | - | chr6_4:1094325-1094344 | Msa0969640:intron | 40.0% |
| AGGGTTAGGAACATGAAAGT+TGG | - | chr6_4:1094409-1094428 | Msa0969640:CDS | 40.0% | |
| GAATGAGAATGCGAATGCTA+GGG | - | chr6_4:1094531-1094550 | Msa0969640:intron | 40.0% | |
| AGGGTTAAGAGCAAGAAAGT+TGG | - | chr6_4:1094550-1094569 | Msa0969640:intron | 40.0% | |
| !!! | AGTTGGTGTTTTTGGTGTTG+GGG | - | chr6_4:1094567-1094586 | Msa0969640:intron | 40.0% |
| !! | AAGAAAGATGAGGTTGGTGA+TGG | - | chr6_4:1094591-1094610 | Msa0969640:intron | 40.0% |
| ! | GAAAGGTGTGGAAAGAGAAA+AGG | - | chr6_4:1094647-1094666 | Msa0969640:intron | 40.0% |
| AGAAAAGGAAAAGGGGAAGA+GGG | - | chr6_4:1094662-1094681 | Msa0969640:intron | 40.0% | |
| TGTTAGTGAGAAGAAGGTAG+AGG | - | chr6_4:1094701-1094720 | Msa0969640:intron | 40.0% | |
| !!! | GGTTTTGAATGTGAAGAAGG+AGG | - | chr6_4:1094734-1094753 | Msa0969640:intron | 40.0% |
| !!! | TTGAGCCGTTTTTTAGTTCG+AGG | - | chr6_4:1094766-1094785 | Msa0969640:intron | 40.0% |
| GTCCTCCTCGAACTAAAAAA+CGG | + | chr6_4:1094774-1094793 | None:intergenic | 40.0% | |
| !!! | GTTTTTTAGTTCGAGGAGGA+CGG | - | chr6_4:1094773-1094792 | Msa0969640:intron | 40.0% |
| !!! | TTTTTTAGTTCGAGGAGGAC+GGG | - | chr6_4:1094774-1094793 | Msa0969640:intron | 40.0% |
| ! | ATGTTTGGGATAGTTCGCAT+GGG | - | chr6_4:1094805-1094824 | Msa0969640:intron | 40.0% |
| ATGAGTGCAAAACACGAAGT+TGG | + | chr6_4:1095190-1095209 | None:intergenic | 40.0% | |
| TTACTGAGTGGTTAACCTGA+TGG | - | chr6_4:1095252-1095271 | Msa0969640:intron | 40.0% | |
| AAGCAAAACGAAGCAAAGCA+AGG | + | chr6_4:1095285-1095304 | None:intergenic | 40.0% | |
| ! | AGTGCTGCAGTAAAAGCATA+TGG | + | chr6_4:1095455-1095474 | None:intergenic | 40.0% |
| TTTACTGCAGCACTAAGTGA+CGG | - | chr6_4:1095461-1095480 | Msa0969640:CDS | 40.0% | |
| !! | AGTGACGGTTTAGGTTGTAT+TGG | - | chr6_4:1095476-1095495 | Msa0969640:CDS | 40.0% |
| TGGACTTCATTCACAGTTTG+TGG | - | chr6_4:1095717-1095736 | Msa0969640:intron | 40.0% | |
| TCGCCTTGTCAAAGTGAAAA+AGG | - | chr6_4:1095749-1095768 | Msa0969640:CDS | 40.0% | |
| CCCATTTGAGTACTAAGTAC+TGG | - | chr6_4:1095953-1095972 | Msa0969640:intron | 40.0% | |
| ATGCTTCAGATATCAAGGGA+TGG | - | chr6_4:1096058-1096077 | Msa0969640:intron | 40.0% | |
| CAGATATCAAGGGATGGTTA+AGG | - | chr6_4:1096064-1096083 | Msa0969640:intron | 40.0% | |
| GGATGGTTAAGGGTTATAGT+GGG | - | chr6_4:1096075-1096094 | Msa0969640:intron | 40.0% | |
| GATGGTTAAGGGTTATAGTG+GGG | - | chr6_4:1096076-1096095 | Msa0969640:intron | 40.0% | |
| AGACAAATGAGCTCACACTA+TGG | - | chr6_4:1096297-1096316 | Msa0969640:intron | 40.0% | |
| ACACGAACAAAATTGGAGCA+TGG | + | chr6_4:1096683-1096702 | None:intergenic | 40.0% | |
| ! | GCTCCAATTTTGTTCGTGTT+TGG | - | chr6_4:1096684-1096703 | Msa0969640:intron | 40.0% |
| CTGCCAAACACGAACAAAAT+TGG | + | chr6_4:1096690-1096709 | None:intergenic | 40.0% | |
| ATCTGCAAGAACCAGTGTTT+CGG | + | chr6_4:1096969-1096988 | None:intergenic | 40.0% | |
| GTGCGTCCAATAACTAAAAC+CGG | - | chr6_4:1097059-1097078 | Msa0969640:intron | 40.0% | |
| ! | TCAAATGGGCAATTTTCGCA+TGG | + | chr6_4:1097141-1097160 | None:intergenic | 40.0% |
| CGAAAATTGCCCATTTGATG+AGG | - | chr6_4:1097143-1097162 | Msa0969640:intron | 40.0% | |
| ACACATAGGCCTCATCAAAT+GGG | + | chr6_4:1097155-1097174 | None:intergenic | 40.0% | |
| AACACATAGGCCTCATCAAA+TGG | + | chr6_4:1097156-1097175 | None:intergenic | 40.0% | |
| CAATATATTGAAACCGCCCA+AGG | + | chr6_4:1097230-1097249 | None:intergenic | 40.0% | |
| CATAGGCCAGCTTAATATGT+AGG | - | chr6_4:1097442-1097461 | Msa0969640:CDS | 40.0% | |
| !!! | AAAAGTGCCTTGTCCTTTTG+TGG | - | chr6_4:1097512-1097531 | Msa0969640:intron | 40.0% |
| !! | AAAGTGCCTTGTCCTTTTGT+GGG | - | chr6_4:1097513-1097532 | Msa0969640:intron | 40.0% |
| TTGTATGAGAAAGCAAGGAG+AGG | - | chr6_4:1097875-1097894 | Msa0969640:intron | 40.0% | |
| TGTATGAGAAAGCAAGGAGA+GGG | - | chr6_4:1097876-1097895 | Msa0969640:intron | 40.0% | |
| AGCTACGCTCTATGTCAAAT+TGG | + | chr6_4:1097940-1097959 | None:intergenic | 40.0% | |
| ATTTGACATAGAGCGTAGCT+TGG | - | chr6_4:1097940-1097959 | Msa0969640:intron | 40.0% | |
| TTGGATGACAGGTAACTTTC+TGG | - | chr6_4:1097959-1097978 | Msa0969640:intron | 40.0% | |
| TGGATGACAGGTAACTTTCT+GGG | - | chr6_4:1097960-1097979 | Msa0969640:intron | 40.0% | |
| GGGGAAAAGGGTTAAAGATT+AGG | + | chr6_4:1098223-1098242 | None:intergenic | 40.0% | |
| TATTGTATGTTGGAGCCCAA+AGG | + | chr6_4:1098350-1098369 | None:intergenic | 40.0% | |
| ! | TATGCGGGTTTTTGATAGGA+AGG | - | chr6_4:1098396-1098415 | Msa0969640:intron | 40.0% |
| ! | ATGCGGGTTTTTGATAGGAA+GGG | - | chr6_4:1098397-1098416 | Msa0969640:intron | 40.0% |
| ! | ACTAATGGTTGGTTCAGCTT+GGG | + | chr6_4:1098483-1098502 | None:intergenic | 40.0% |
| ! | AACTAATGGTTGGTTCAGCT+TGG | + | chr6_4:1098484-1098503 | None:intergenic | 40.0% |
| TATTGTCTGTAGGAGGAACT+TGG | - | chr6_4:1098533-1098552 | Msa0969640:CDS | 40.0% | |
| TTGAAACGGTGATATCACCA+GGG | + | chr6_4:1098616-1098635 | None:intergenic | 40.0% | |
| ATTGAAACGGTGATATCACC+AGG | + | chr6_4:1098617-1098636 | None:intergenic | 40.0% | |
| !! | TATCACGCATCGCTTGTTAT+TGG | - | chr6_4:1098719-1098738 | Msa0969640:intron | 40.0% |
| !! | ATCACGCATCGCTTGTTATT+GGG | - | chr6_4:1098720-1098739 | Msa0969640:intron | 40.0% |
| TCATCTGCTGAATATTGTCC+TGG | + | chr6_4:1099158-1099177 | None:intergenic | 40.0% | |
| AAGCATATTATGGCCCTTTG+TGG | - | chr6_4:1099289-1099308 | Msa0969640:CDS | 40.0% | |
| ! | TGGGTTGAAGAATCTGGAAG+AGG | + | chr6_4:1093837-1093856 | None:intergenic | 45.0% |
| !! | GGAGAATGGGTTGAAGAATC+TGG | + | chr6_4:1093843-1093862 | None:intergenic | 45.0% |
| CTCGTATTGAAGTGGGTATG+GGG | + | chr6_4:1093888-1093907 | None:intergenic | 45.0% | |
| GCTCGTATTGAAGTGGGTAT+GGG | + | chr6_4:1093889-1093908 | None:intergenic | 45.0% | |
| AGCTCGTATTGAAGTGGGTA+TGG | + | chr6_4:1093890-1093909 | None:intergenic | 45.0% | |
| ATTTATCGTTGGCCCAGGAT+TGG | + | chr6_4:1093991-1094010 | None:intergenic | 45.0% | |
| GGTTAATTTATCGTTGGCCC+AGG | + | chr6_4:1093996-1094015 | None:intergenic | 45.0% | |
| TCGGTTTAATTCCGGTTCAG+TGG | + | chr6_4:1094017-1094036 | None:intergenic | 45.0% | |
| !! | CAAATTTTGACGAACCGGGT+CGG | + | chr6_4:1094036-1094055 | None:intergenic | 45.0% |
| TGATGATCATCGTCGTAACG+AGG | - | chr6_4:1094138-1094157 | Msa0969640:intron | 45.0% | |
| TCGTCGTAACGAGGAACAAT+TGG | - | chr6_4:1094147-1094166 | Msa0969640:intron | 45.0% | |
| TCGTAACGAGGAACAATTGG+TGG | - | chr6_4:1094150-1094169 | Msa0969640:intron | 45.0% | |
| GACTTTGCATAAGAGGGAAG+AGG | - | chr6_4:1094201-1094220 | Msa0969640:intron | 45.0% | |
| ! | GCCTGATCCAAACACTGATT+AGG | + | chr6_4:1094313-1094332 | None:intergenic | 45.0% |
| CGAATGCGAATACTAGGGTT+AGG | - | chr6_4:1094395-1094414 | Msa0969640:CDS | 45.0% | |
| CGAATGAGAATGCGAATGCT+AGG | - | chr6_4:1094530-1094549 | Msa0969640:intron | 45.0% | |
| !!! | GTTGGTGTTTTTGGTGTTGG+GGG | - | chr6_4:1094568-1094587 | Msa0969640:intron | 45.0% |
| TGAGGAGAATGAGAAAGGTG+TGG | - | chr6_4:1094635-1094654 | Msa0969640:intron | 45.0% | |
| GAGAAAAGGAAAAGGGGAAG+AGG | - | chr6_4:1094661-1094680 | Msa0969640:intron | 45.0% | |
| GAAAAGGAAAAGGGGAAGAG+GGG | - | chr6_4:1094663-1094682 | Msa0969640:intron | 45.0% | |
| !!! | AGCCGTTTTTTAGTTCGAGG+AGG | - | chr6_4:1094769-1094788 | Msa0969640:intron | 45.0% |
| TGCGAACTATCCCAAACATG+AGG | + | chr6_4:1094804-1094823 | None:intergenic | 45.0% | |
| ! | CATGTTTGGGATAGTTCGCA+TGG | - | chr6_4:1094804-1094823 | Msa0969640:intron | 45.0% |
| ATAGCGAAGTGGCTACCTTT+AGG | + | chr6_4:1094852-1094871 | None:intergenic | 45.0% | |
| TAGACTACATTGCTGCAGTC+AGG | - | chr6_4:1095129-1095148 | Msa0969640:intron | 45.0% | |
| AGTTGGAACACAGACCATCT+AGG | + | chr6_4:1095173-1095192 | None:intergenic | 45.0% | |
| AGTAACGCAGTCTCAGCATT+CGG | + | chr6_4:1095237-1095256 | None:intergenic | 45.0% | |
| AGTGTGAATTTGTGGCAGGT+TGG | - | chr6_4:1095697-1095716 | Msa0969640:intron | 45.0% | |
| ! | TATTTACAGGTTGGGCATGC+CGG | - | chr6_4:1095834-1095853 | Msa0969640:intron | 45.0% |
| AGCCATTGGATCAAGAGTTC+CGG | + | chr6_4:1095856-1095875 | None:intergenic | 45.0% | |
| ACTCTTGATCCAATGGCTAC+TGG | - | chr6_4:1095858-1095877 | Msa0969640:intron | 45.0% | |
| CGTTGGCAAGTCAACAAAAC+TGG | - | chr6_4:1095896-1095915 | Msa0969640:intron | 45.0% | |
| TGGCAAGTCAACAAAACTGG+TGG | - | chr6_4:1095899-1095918 | Msa0969640:intron | 45.0% | |
| ! | AGTCAACAAAACTGGTGGAC+AGG | - | chr6_4:1095904-1095923 | Msa0969640:intron | 45.0% |
| GGGATGGTTAAGGGTTATAG+TGG | - | chr6_4:1096074-1096093 | Msa0969640:intron | 45.0% | |
| !! | TATAGTGGGGTTTTCCGCTT+AGG | - | chr6_4:1096089-1096108 | Msa0969640:intron | 45.0% |
| !! | ATAGTGGGGTTTTCCGCTTA+GGG | - | chr6_4:1096090-1096109 | Msa0969640:intron | 45.0% |
| GAGGTTGAAGGGTCCTTTAA+TGG | + | chr6_4:1096598-1096617 | None:intergenic | 45.0% | |
| CACATCGTACAGAGGTTGAA+GGG | + | chr6_4:1096609-1096628 | None:intergenic | 45.0% | |
| TCACATCGTACAGAGGTTGA+AGG | + | chr6_4:1096610-1096629 | None:intergenic | 45.0% | |
| AAAATTGGAGCATGGACCGT+CGG | + | chr6_4:1096675-1096694 | None:intergenic | 45.0% | |
| CAGAGAATCAAACAGAGCAG+AGG | + | chr6_4:1096786-1096805 | None:intergenic | 45.0% | |
| GTTGAGGGTGAAGAGAAAGA+TGG | - | chr6_4:1096836-1096855 | Msa0969640:intron | 45.0% | |
| AGAACCAGTGTTTCGGGAAA+AGG | + | chr6_4:1096962-1096981 | None:intergenic | 45.0% | |
| TCTGCAAGAACCAGTGTTTC+GGG | + | chr6_4:1096968-1096987 | None:intergenic | 45.0% | |
| TTTGATGTTTGGACCTTGGG+CGG | - | chr6_4:1097214-1097233 | Msa0969640:CDS | 45.0% | |
| ! | AAGTGCCTTGTCCTTTTGTG+GGG | - | chr6_4:1097514-1097533 | Msa0969640:intron | 45.0% |
| AATCTCCCCACAAAAGGACA+AGG | + | chr6_4:1097522-1097541 | None:intergenic | 45.0% | |
| ! | TGTCCTTTTGTGGGGAGATT+TGG | - | chr6_4:1097522-1097541 | Msa0969640:intron | 45.0% |
| TTGCCAAATCTCCCCACAAA+AGG | + | chr6_4:1097528-1097547 | None:intergenic | 45.0% | |
| GTATGAGAAAGCAAGGAGAG+GGG | - | chr6_4:1097877-1097896 | Msa0969640:intron | 45.0% | |
| AGGACATGAGAAGGGGAAAA+GGG | + | chr6_4:1098235-1098254 | None:intergenic | 45.0% | |
| TAGGACATGAGAAGGGGAAA+AGG | + | chr6_4:1098236-1098255 | None:intergenic | 45.0% | |
| ! | GGAGGAACTTGGAGGATTTT+TGG | - | chr6_4:1098544-1098563 | Msa0969640:CDS | 45.0% |
| CAGGGATATTCGACAGACTA+GGG | + | chr6_4:1098598-1098617 | None:intergenic | 45.0% | |
| !! | TCACGCATCGCTTGTTATTG+GGG | - | chr6_4:1098721-1098740 | Msa0969640:intron | 45.0% |
| ! | GATCACTCTGTGCGGATTTT+GGG | - | chr6_4:1098891-1098910 | Msa0969640:CDS | 45.0% |
| GCTCTCCGAAGAGATTCAAT+TGG | - | chr6_4:1099051-1099070 | Msa0969640:CDS | 45.0% | |
| !! | GACTTGGTGCGTAGAATTGT+CGG | - | chr6_4:1099339-1099358 | Msa0969640:CDS | 45.0% |
| !! | AATATATAAAATAATAATGA+TGG | - | chr6_4:1098072-1098091 | Msa0969640:CDS | 5.0% |
| GGAAACGGAGAGTGGAGAAT+GGG | + | chr6_4:1093856-1093875 | None:intergenic | 50.0% | |
| AGGAAACGGAGAGTGGAGAA+TGG | + | chr6_4:1093857-1093876 | None:intergenic | 50.0% | |
| ATGGGGTTGTGGAGAGGAAA+CGG | + | chr6_4:1093871-1093890 | None:intergenic | 50.0% | |
| TTGAAGTGGGTATGGGGTTG+TGG | + | chr6_4:1093882-1093901 | None:intergenic | 50.0% | |
| ! | TTAGCGGTTCGAGTGGGTTT+GGG | + | chr6_4:1093935-1093954 | None:intergenic | 50.0% |
| ! | TTTAGCGGTTCGAGTGGGTT+TGG | + | chr6_4:1093936-1093955 | None:intergenic | 50.0% |
| ! | GATTGGAGGGAGGAGTTTTG+AGG | + | chr6_4:1093974-1093993 | None:intergenic | 50.0% |
| AAAACTCCTCCCTCCAATCC+TGG | - | chr6_4:1093975-1093994 | Msa0969640:three_prime_UTR | 50.0% | |
| AAACTCCTCCCTCCAATCCT+GGG | - | chr6_4:1093976-1093995 | Msa0969640:three_prime_UTR | 50.0% | |
| GAACCGGAATTAAACCGACC+CGG | - | chr6_4:1094019-1094038 | Msa0969640:three_prime_UTR | 50.0% | |
| ! | GAACCGGGTCGGTTTAATTC+CGG | + | chr6_4:1094025-1094044 | None:intergenic | 50.0% |
| GGAGATGATACCGGAAGTTG+TGG | - | chr6_4:1094171-1094190 | Msa0969640:intron | 50.0% | |
| TACCGGAAGTTGTGGAGTTG+AGG | - | chr6_4:1094179-1094198 | Msa0969640:intron | 50.0% | |
| GTCCTCAACTCCACAACTTC+CGG | + | chr6_4:1094184-1094203 | None:intergenic | 50.0% | |
| GTGTTGGGGGAAGAAAGATG+AGG | - | chr6_4:1094581-1094600 | Msa0969640:intron | 50.0% | |
| TGGGGGAAGAAAGATGAGGT+TGG | - | chr6_4:1094585-1094604 | Msa0969640:intron | 50.0% | |
| GACGGGACTTCCTCATGTTT+GGG | - | chr6_4:1094791-1094810 | Msa0969640:intron | 50.0% | |
| TAGCTGCTATCGTGGAGCTA+TGG | - | chr6_4:1095024-1095043 | Msa0969640:intron | 50.0% | |
| GCTATGGCACTGTAGTGTAG+CGG | - | chr6_4:1095040-1095059 | Msa0969640:intron | 50.0% | |
| CAGACAGCTGTTGACCTAGA+TGG | - | chr6_4:1095156-1095175 | Msa0969640:intron | 50.0% | |
| TGAGTGGTTAACCTGATGGC+AGG | - | chr6_4:1095256-1095275 | Msa0969640:intron | 50.0% | |
| AAGCAAGGATTCCTGCCATC+AGG | + | chr6_4:1095270-1095289 | None:intergenic | 50.0% | |
| GCAGCACTAAGTGACGGTTT+AGG | - | chr6_4:1095467-1095486 | Msa0969640:CDS | 50.0% | |
| TGCCGGAACTCTTGATCCAA+TGG | - | chr6_4:1095851-1095870 | Msa0969640:intron | 50.0% | |
| ! | TAGTGGGGTTTTCCGCTTAG+GGG | - | chr6_4:1096091-1096110 | Msa0969640:intron | 50.0% |
| TTGAAGTAGCCTCCCCTAAG+CGG | + | chr6_4:1096106-1096125 | None:intergenic | 50.0% | |
| TAGGGGAGGCTACTTCAACA+TGG | - | chr6_4:1096108-1096127 | Msa0969640:intron | 50.0% | |
| AGGGGAGGCTACTTCAACAT+GGG | - | chr6_4:1096109-1096128 | Msa0969640:intron | 50.0% | |
| AAATTGGAGCATGGACCGTC+GGG | + | chr6_4:1096674-1096693 | None:intergenic | 50.0% | |
| TGGCAAGTTGCATTCTCGCA+GGG | + | chr6_4:1096714-1096733 | None:intergenic | 50.0% | |
| ATGGCAAGTTGCATTCTCGC+AGG | + | chr6_4:1096715-1096734 | None:intergenic | 50.0% | |
| GAACTACGCACTGAAGAACG+TGG | + | chr6_4:1096752-1096771 | None:intergenic | 50.0% | |
| ! | TGCACCTTTTCCCGAAACAC+TGG | - | chr6_4:1096955-1096974 | Msa0969640:intron | 50.0% |
| GGACGCACAACTAATGAAGC+AGG | + | chr6_4:1097047-1097066 | None:intergenic | 50.0% | |
| TCGTCTTTGATGTGCTCCCA+TGG | + | chr6_4:1097482-1097501 | None:intergenic | 50.0% | |
| ! | ATGGGAGCACATCAAAGACG+AGG | - | chr6_4:1097481-1097500 | Msa0969640:intron | 50.0% |
| TAGAGCGTAGCTTGGATGAC+AGG | - | chr6_4:1097948-1097967 | Msa0969640:intron | 50.0% | |
| ! | AGGCAAAAAGGGGCACAGAA+CGG | + | chr6_4:1097991-1098010 | None:intergenic | 50.0% |
| TGTCTGTAGGAGGAACTTGG+AGG | - | chr6_4:1098536-1098555 | Msa0969640:CDS | 50.0% | |
| CCAGGGATATTCGACAGACT+AGG | + | chr6_4:1098599-1098618 | None:intergenic | 50.0% | |
| CCTAGTCTGTCGAATATCCC+TGG | - | chr6_4:1098596-1098615 | Msa0969640:CDS | 50.0% | |
| ! | CGATCACTCTGTGCGGATTT+TGG | - | chr6_4:1098890-1098909 | Msa0969640:CDS | 50.0% |
| !! | ACTCTGTGCGGATTTTGGGA+AGG | - | chr6_4:1098895-1098914 | Msa0969640:CDS | 50.0% |
| !! | ATTTTGGGAAGGCTCTTGGC+AGG | - | chr6_4:1098906-1098925 | Msa0969640:CDS | 50.0% |
| TTGTAGTTGCGCCCACCTAA+CGG | - | chr6_4:1099029-1099048 | Msa0969640:CDS | 50.0% | |
| AATCTCTTCGGAGAGCCGTT+AGG | + | chr6_4:1099047-1099066 | None:intergenic | 50.0% | |
| TGCATGGGACTTTCAAGAGC+TGG | - | chr6_4:1099178-1099197 | Msa0969640:CDS | 50.0% | |
| GGACTTTCAAGAGCTGGAAG+AGG | - | chr6_4:1099184-1099203 | Msa0969640:CDS | 50.0% | |
| TGTGGAGAGGAAACGGAGAG+TGG | + | chr6_4:1093864-1093883 | None:intergenic | 55.0% | |
| TGGGTTTGGGGAGATTGGGA+CGG | + | chr6_4:1093922-1093941 | None:intergenic | 55.0% | |
| ! | CGAGTGGGTTTGGGGAGATT+GGG | + | chr6_4:1093926-1093945 | None:intergenic | 55.0% |
| ! | TCGAGTGGGTTTGGGGAGAT+TGG | + | chr6_4:1093927-1093946 | None:intergenic | 55.0% |
| ! | TAGCGGTTCGAGTGGGTTTG+GGG | + | chr6_4:1093934-1093953 | None:intergenic | 55.0% |
| TCGCGTTTAGCGGTTCGAGT+GGG | + | chr6_4:1093941-1093960 | None:intergenic | 55.0% | |
| TTCGCGTTTAGCGGTTCGAG+TGG | + | chr6_4:1093942-1093961 | None:intergenic | 55.0% | |
| !! | TGGGGTTGGTTCGCGTTTAG+CGG | + | chr6_4:1093951-1093970 | None:intergenic | 55.0% |
| !!! | GAGGAGTTTTGAGGTGGGGT+TGG | + | chr6_4:1093965-1093984 | None:intergenic | 55.0% |
| !!! | GAGGGAGGAGTTTTGAGGTG+GGG | + | chr6_4:1093969-1093988 | None:intergenic | 55.0% |
| !!! | GGAGGGAGGAGTTTTGAGGT+GGG | + | chr6_4:1093970-1093989 | None:intergenic | 55.0% |
| !!! | TGGAGGGAGGAGTTTTGAGG+TGG | + | chr6_4:1093971-1093990 | None:intergenic | 55.0% |
| ATCGTTGGCCCAGGATTGGA+GGG | + | chr6_4:1093987-1094006 | None:intergenic | 55.0% | |
| TATCGTTGGCCCAGGATTGG+AGG | + | chr6_4:1093988-1094007 | None:intergenic | 55.0% | |
| GGACGGGACTTCCTCATGTT+TGG | - | chr6_4:1094790-1094809 | Msa0969640:intron | 55.0% | |
| GCTGAGACTGCGTTACTGAG+TGG | - | chr6_4:1095240-1095259 | Msa0969640:intron | 55.0% | |
| ACGCGAGTCACATCGTACAG+AGG | + | chr6_4:1096617-1096636 | None:intergenic | 55.0% | |
| GACGAAGTCGCAGCATACAG+AGG | + | chr6_4:1096644-1096663 | None:intergenic | 55.0% | |
| ACTTCGTCTGTCATCCCCGA+CGG | - | chr6_4:1096656-1096675 | Msa0969640:intron | 55.0% | |
| AATTGGAGCATGGACCGTCG+GGG | + | chr6_4:1096673-1096692 | None:intergenic | 55.0% | |
| TCACCCTCAACCACACACAG+TGG | + | chr6_4:1096827-1096846 | None:intergenic | 55.0% | |
| AGGTCATTCAGCGTGAGCCA+TGG | - | chr6_4:1097462-1097481 | Msa0969640:intron | 55.0% | |
| GGTCATTCAGCGTGAGCCAT+GGG | - | chr6_4:1097463-1097482 | Msa0969640:intron | 55.0% | |
| ! | CAAAAAGGGGCACAGAACGG+AGG | + | chr6_4:1097988-1098007 | None:intergenic | 55.0% |
| !! | GCGGATTTTGGGAAGGCTCT+TGG | - | chr6_4:1098902-1098921 | Msa0969640:CDS | 55.0% |
| TCTTCGGAGAGCCGTTAGGT+GGG | + | chr6_4:1099043-1099062 | None:intergenic | 55.0% | |
| GTGGGTATGGGGTTGTGGAG+AGG | + | chr6_4:1093877-1093896 | None:intergenic | 60.0% | |
| GGAAAAGGGGAAGAGGGGTG+TGG | - | chr6_4:1094668-1094687 | Msa0969640:intron | 60.0% | |
| ! | TGGGGTTTTCCGCTTAGGGG+AGG | - | chr6_4:1096094-1096113 | Msa0969640:intron | 60.0% |
| AGAACGTGGCAGAGGCAGAG+AGG | + | chr6_4:1096738-1096757 | None:intergenic | 60.0% | |
| CGCACTGAAGAACGTGGCAG+AGG | + | chr6_4:1096746-1096765 | None:intergenic | 60.0% | |
| !! | CACACACAGTGGCGGATCAG+AGG | + | chr6_4:1096816-1096835 | None:intergenic | 60.0% |
| CTCTGATCCGCCACTGTGTG+TGG | - | chr6_4:1096814-1096833 | Msa0969640:intron | 60.0% | |
| TCCGCCACTGTGTGTGGTTG+AGG | - | chr6_4:1096820-1096839 | Msa0969640:intron | 60.0% | |
| CCCTCAACCACACACAGTGG+CGG | + | chr6_4:1096824-1096843 | None:intergenic | 60.0% | |
| CCGCCACTGTGTGTGGTTGA+GGG | - | chr6_4:1096821-1096840 | Msa0969640:intron | 60.0% | |
| CTCTTCGGAGAGCCGTTAGG+TGG | + | chr6_4:1099044-1099063 | None:intergenic | 60.0% | |
| GTTGGCCCAGGATTGGAGGG+AGG | + | chr6_4:1093984-1094003 | None:intergenic | 65.0% | |
| CGTGGCAGAGGCAGAGAGGA+TGG | + | chr6_4:1096734-1096753 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1093779 | 1099535 | 1093779 | ID=Msa0969640;Name=Msa0969640 |
| chr6_4 | mRNA | 1093779 | 1099535 | 1093779 | ID=Msa0969640-mRNA-1;Parent=Msa0969640;Name=Msa0969640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.6|0.63|0.90|0.9|1|11|306|599 |
| chr6_4 | exon | 1093779 | 1094155 | 1093779 | ID=Msa0969640-mRNA-1:exon:631;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1094242 | 1094279 | 1094242 | ID=Msa0969640-mRNA-1:exon:630;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1094387 | 1094470 | 1094387 | ID=Msa0969640-mRNA-1:exon:629;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1095345 | 1095505 | 1095345 | ID=Msa0969640-mRNA-1:exon:628;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1095740 | 1095850 | 1095740 | ID=Msa0969640-mRNA-1:exon:627;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1097169 | 1097247 | 1097169 | ID=Msa0969640-mRNA-1:exon:626;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1097389 | 1097471 | 1097389 | ID=Msa0969640-mRNA-1:exon:625;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1097544 | 1097599 | 1097544 | ID=Msa0969640-mRNA-1:exon:624;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1098053 | 1098163 | 1098053 | ID=Msa0969640-mRNA-1:exon:623;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1098459 | 1098675 | 1098459 | ID=Msa0969640-mRNA-1:exon:622;Parent=Msa0969640-mRNA-1 |
| chr6_4 | exon | 1098747 | 1099535 | 1098747 | ID=Msa0969640-mRNA-1:exon:621;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1098747 | 1099535 | 1098747 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1098459 | 1098675 | 1098459 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1098053 | 1098163 | 1098053 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1097544 | 1097599 | 1097544 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1097389 | 1097471 | 1097389 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1097169 | 1097247 | 1097169 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1095740 | 1095850 | 1095740 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1095345 | 1095505 | 1095345 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1094387 | 1094470 | 1094387 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1094242 | 1094279 | 1094242 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | CDS | 1094085 | 1094155 | 1094085 | ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1 |
| chr6_4 | three_prime_UTR | 1093779 | 1094084 | 1093779 | ID=Msa0969640-mRNA-1:three_prime_utr;Parent=Msa0969640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
