AlfalfaGEDB | Msa0969640

M. sativa cultivar zhongmu-4 / Msa0969640

KEGG: K03177
GO: -
PFAM: PF01509.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969640	XP_013450730.1	84.051	627	17	6	1	599	1	572	0.0	1035

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969640	sp\|Q9RB36\|TRUB_FLAJ1	44.298	228	101	3	374	594	20	228	1.69e-53	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969640	A0A072U4X6	84.051	627	17	6	1	599	1	572	0.0	1035

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007230	Msa0969640	0.834156	3.528244e-56	-8.615850e-47
Msa0030000	Msa0969640	0.808425	3.117197e-50	-8.615850e-47
Msa0031720	Msa0969640	0.822664	2.098530e-53	-8.615850e-47
Msa0032120	Msa0969640	0.842508	2.477124e-58	-8.615850e-47
Msa0032400	Msa0969640	0.831720	1.422629e-55	-8.615850e-47
Msa0055590	Msa0969640	0.840721	7.333681e-58	-8.615850e-47
Msa0055650	Msa0969640	0.814150	1.783950e-51	-8.615850e-47
Msa0073820	Msa0969640	0.821769	3.384649e-53	-8.615850e-47
Msa0091480	Msa0969640	0.808642	2.801688e-50	-8.615850e-47
Msa0091770	Msa0969640	0.806554	7.775742e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969640	MtrunA17_Chr6g0449211	84.051	627	17	6	1	599	1	572	0.0	1035
Msa0969640	MtrunA17_Chr4g0037641	28.141	199	92	5	375	573	99	246	1.17e-19	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969640	AT5G14460.1	52.733	622	179	12	1	599	11	540	0.0	580
Msa0969640	AT3G57150.1	30.151	199	88	5	375	573	92	239	2.24e-16	82.8

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Find 151 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCTCCCTCCAATCC+TGG	0.362557	6_4:-1099317	Msa0969640:CDS
AAAAGTTGTATGAGAAAGCA+AGG	0.502196	6_4:-1095422	Msa0969640:CDS
AAACTCCTCCCTCCAATCCT+GGG	0.533078	6_4:-1099316	Msa0969640:CDS
AAAGAGCAAACTAACAAGTG+GGG	0.714316	6_4:+1093776	None:intergenic
AAGAGGAGGAAGAGAATGTA+TGG	0.412854	6_4:-1099189	Msa0969640:CDS
AAGAGGTTGTTGTTAGGAAA+TGG	0.356970	6_4:+1099475	None:intergenic
AAGCATATTATGGCCCTTTG+TGG	0.460080	6_4:-1094003	Msa0969640:three_prime_UTR
AATATTCAGCAGATGATGCA+TGG	0.539686	6_4:-1094130	Msa0969640:CDS
AATCTCCCCACAAAAGGACA+AGG	0.707724	6_4:+1095773	None:intergenic
AATCTCTTCGGAGAGCCGTT+AGG	0.515298	6_4:+1094248	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAGTGGTTAATTTATCGT+TGG	+	chr6_4:1094002-1094021	None:intergenic	30.0%
GAAAATACTATAACAAGAGG+AGG	-	chr6_4:1094089-1094108	Msa0969640:CDS	30.0%
TATGAACAATTAGATTGACC+AGG	+	chr6_4:1094346-1094365	None:intergenic	30.0%
TAATTCGAATGCGAATACTA+GGG	-	chr6_4:1094390-1094409	Msa0969640:CDS	30.0%
TAAAGATGTTAGTGAGAAGA+AGG	-	chr6_4:1094695-1094714	Msa0969640:intron	30.0%
AAGAAATGTAAATAGCGAAG+TGG	+	chr6_4:1094863-1094882	None:intergenic	30.0%
AGAAAAACAGATTAACTCAC+TGG	+	chr6_4:1096146-1096165	None:intergenic	30.0%
TTGCATTGCTTCAAATGTAA+AGG	-	chr6_4:1096218-1096237	Msa0969640:intron	30.0%
GTCTAACTATGATCTATCTA+CGG	+	chr6_4:1096549-1096568	None:intergenic	30.0%
GATCTGTTGAATTTGTAAGA+TGG	-	chr6_4:1097090-1097109	Msa0969640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	1093779	1099535	1093779	ID=Msa0969640;Name=Msa0969640
chr6_4	mRNA	1093779	1099535	1093779	ID=Msa0969640-mRNA-1;Parent=Msa0969640;Name=Msa0969640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.6\|0.63\|0.90\|0.9\|1\|11\|306\|599
chr6_4	exon	1093779	1094155	1093779	ID=Msa0969640-mRNA-1:exon:631;Parent=Msa0969640-mRNA-1
chr6_4	exon	1094242	1094279	1094242	ID=Msa0969640-mRNA-1:exon:630;Parent=Msa0969640-mRNA-1
chr6_4	exon	1094387	1094470	1094387	ID=Msa0969640-mRNA-1:exon:629;Parent=Msa0969640-mRNA-1
chr6_4	exon	1095345	1095505	1095345	ID=Msa0969640-mRNA-1:exon:628;Parent=Msa0969640-mRNA-1
chr6_4	exon	1095740	1095850	1095740	ID=Msa0969640-mRNA-1:exon:627;Parent=Msa0969640-mRNA-1
chr6_4	exon	1097169	1097247	1097169	ID=Msa0969640-mRNA-1:exon:626;Parent=Msa0969640-mRNA-1
chr6_4	exon	1097389	1097471	1097389	ID=Msa0969640-mRNA-1:exon:625;Parent=Msa0969640-mRNA-1
chr6_4	exon	1097544	1097599	1097544	ID=Msa0969640-mRNA-1:exon:624;Parent=Msa0969640-mRNA-1
chr6_4	exon	1098053	1098163	1098053	ID=Msa0969640-mRNA-1:exon:623;Parent=Msa0969640-mRNA-1
chr6_4	exon	1098459	1098675	1098459	ID=Msa0969640-mRNA-1:exon:622;Parent=Msa0969640-mRNA-1
chr6_4	exon	1098747	1099535	1098747	ID=Msa0969640-mRNA-1:exon:621;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1098747	1099535	1098747	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1098459	1098675	1098459	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1098053	1098163	1098053	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1097544	1097599	1097544	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1097389	1097471	1097389	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1097169	1097247	1097169	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1095740	1095850	1095740	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1095345	1095505	1095345	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1094387	1094470	1094387	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1094242	1094279	1094242	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	CDS	1094085	1094155	1094085	ID=Msa0969640-mRNA-1:cds;Parent=Msa0969640-mRNA-1
chr6_4	three_prime_UTR	1093779	1094084	1093779	ID=Msa0969640-mRNA-1:three_prime_utr;Parent=Msa0969640-mRNA-1

Gene Sequence

>Msa0969640

ATGGTGAAACCAATATCTGTATCTCTAACCCACCATCTCCATTTCCTAACAACAACCTCTTCCAGATTCTTCAACCCATTCTCCACTCTCCGTTTCCTCTCCACAACCCCATACCCACTTCAATACGAGCTCATCATCAACCGTCCCAATCTCCCCAAACCCACTCGAACCGCTAAACGCGAACCAACCCCACCTCAAAACTCCTCCCTCCAATCCTGGGCCAACGATAAATTAACCACTGAACCGGAATTAAACCGACCCGGTTCGTCAAAATTTGAACTTGATGATCACAATCTTGATAAATCCAAGAGAAAATACTATAACAAGAGGAGGAAGAGAATGTATGGGTCTGATTCCGATGATGATCATCGTCGTAACGAGGAACAATTGGTGGAGATGATACCGGAAGTTGTGGAGTTGAGGACTTTGCATAAGAGGGAAGAGGAATTGTATATGTATGATGCTTTTTGTTATCCTTGGGAGAAAGATAAGCATTATAAAATGGTGTATCAGTTGGAGAAAAAGTATTTTCCTAATCAGTGTTTGGATCAGGCTTTTTTGAAACCTGGTCAATCTAATTGTTCATATGCTAGTTATACAAAGTCAAATGCTAATTCGAATGCGAATACTAGGGTTAGGAACATGAAAGTTGGTGTTTTTAGGGAGAATAAGGAGGTTGTTGATGATGATAAGTTGGTGTTTTTTGATGAGAATGGGAAAGACGATGATCGTAGAAATGCAAGTTCAAGTTCGAATGAGAATGCGAATGCTAGGGTTAAGAGCAAGAAAGAGAATGAGAAAGGTGTGGAAAGAGAAAAGGAAAAGGGGAAGAGGGGTGTGGATAGTAAAGATGTTAGTGAGAAGAAGGTAGAGGAGTTTTTTAAGGTTTTGAATGTGAAGAAGGAGGTTGAAGTTGTTGAGCCGTTTTTTAGTTCGAGGAGGACGGGACTTCCTCATGTTTGGGATAGTTCGCATGGGACTGTGCTTTTGATTAACAAACCTAAAGGCAATCAGACAGCTGTTGACCTAGATGGTCTGTGTTCCAACTTCGTGTTTTGCACTCATTTGCAAAGTTGGAATACAAGCTATCCGAATGCTGAGACTGCGTTACTGAGTGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGTCGCCTTGTCAAAGTGAAAAAGGTTGGGCATGCCGGAACTCTTGATCCAATGGCTACTGGTTTATTGATTGTTTGCGTTGGCAAGTCAACAAAACTGGTGGACAGATATCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCACCTATGTTCTCTGCTATTAAAACTTGGTTTCTTATGGAAGCAATTCCTTACAATCATCACTGCTTTTTTATAGTTGGAGGTGAAAAGTTGTATGAGAAAGCAAGGAGAGGGGAAAGCATTGAACTCTCGCCAAGACGAATTTCAATCTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGGACATATATTCGATCACTCTGTGCGGATTTTGGGAAGGCTCTTGGCAGTTGCGCCCACCTAACGGCTCTCCGAAGAGATTCAATTGGACAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAACTTATCTTTAA

Protein sequence

>Msa0969640

MVKPISVSLTHHLHFLTTTSSRFFNPFSTLRFLSTTPYPLQYELIINRPNLPKPTRTAKREPTPPQNSSLQSWANDKLTTEPELNRPGSSKFELDDHNLDKSKRKYYNKRRKRMYGSDSDDDHRRNEEQLVEMIPEVVELRTLHKREEELYMYDAFCYPWEKDKHYKMVYQLEKKYFPNQCLDQAFLKPGQSNCSYASYTKSNANSNANTRVRNMKVGVFRENKEVVDDDKLVFFDENGKDDDRRNASSSSNENANARVKSKKENEKGVEREKEKGKRGVDSKDVSEKKVEEFFKVLNVKKEVEVVEPFFSSRRTGLPHVWDSSHGTVLLINKPKGNQTAVDLDGLCSNFVFCTHLQSWNTSYPNAETALLSGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKTWFLMEAIPYNHHCFFIVGGEKLYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKTYL*