AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134150 MtrunA17_Chr7g0214651 93.231 458 16 2 1 443 2 459 0.0 863
Msa1134150 MtrunA17_Chr7g0214571 68.939 264 68 2 57 306 9 272 1.39e-125 368
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134150 AT2G43180.1 64.583 432 124 7 29 443 40 459 0.0 526
Msa1134150 AT2G43180.3 64.583 432 123 7 29 443 40 458 0.0 523
Msa1134150 AT2G43180.2 63.855 415 121 7 29 426 40 442 6.83e-175 498
Msa1134150 AT2G43180.4 63.210 405 120 7 29 416 40 432 1.54e-165 474
Msa1134150 AT1G77060.1 34.494 316 181 8 38 334 26 334 2.94e-50 174
Msa1134150 AT1G21440.2 35.135 296 167 8 59 334 42 332 4.68e-47 165
Msa1134150 AT1G21440.1 35.135 296 167 8 59 334 42 332 4.68e-47 165

Find 152 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATACAGGCTGGATTTC+TGG 0.081935 7_4:+569453 Msa1134150:intron
AACTTAACTGGTTCTTTATT+TGG 0.127157 7_4:-570542 None:intergenic
GCCTATCCCCTTTCCTTGAT+TGG 0.216177 7_4:+567264 Msa1134150:CDS
ACATTTCTTTGTTAATATTC+TGG 0.227076 7_4:-570903 None:intergenic
TTAGGAACTACAAGCATAAA+TGG 0.227423 7_4:+570563 Msa1134150:three_prime_UTR
ATCAGATCCACTCTCATTTC+TGG 0.228975 7_4:-566906 None:intergenic
CGGGACCAGATTCCAGTAAA+AGG 0.250372 7_4:-568912 None:intergenic
TGACAGGATTCAAGTATTTC+TGG 0.250527 7_4:+569679 Msa1134150:three_prime_UTR
TCAAAAGTTGGCATGCTTCC+TGG 0.263871 7_4:-568149 None:intergenic
CTTGTAGTTCCTAACTTAAC+TGG 0.287922 7_4:-570554 None:intergenic
ACTCTGAGAATTAAAATAAT+TGG 0.288336 7_4:+568936 Msa1134150:CDS
GAAGAAATTAAGGATACTTT+AGG 0.291621 7_4:+568170 Msa1134150:CDS
GCCTCCTCCTTCAAGCATAT+TGG 0.295305 7_4:-567187 None:intergenic
TCTGTTGGAATTCCTGTTAT+TGG 0.302952 7_4:+565383 Msa1134150:CDS
GGCCGCGCCGGCGCCACCCC+TGG 0.321442 7_4:+565026 Msa1134150:CDS
TTCTATCTCTGCTTCTCGAT+TGG 0.331860 7_4:+565295 Msa1134150:CDS
GATGCGCTGACTGCTATTAA+AGG 0.334698 7_4:+568110 Msa1134150:CDS
GAATAAAATAAAATAAAATA+AGG 0.345431 7_4:-570761 None:intergenic
TCTATCTCTGCTTCTCGATT+GGG 0.358777 7_4:+565296 Msa1134150:CDS
CCTGATGTGTACAATAAATA+TGG 0.361591 7_4:+568870 Msa1134150:CDS
ACTACCATGGAAAGGATATA+GGG 0.366864 7_4:-570678 None:intergenic
GTTATTGGTGATGCTGATAA+TGG 0.368766 7_4:+565398 Msa1134150:CDS
GAATGTTAAGAGAACTGTTA+AGG 0.376366 7_4:+565436 Msa1134150:CDS
AACTCTATGCAGCTTTGGGT+GGG 0.377383 7_4:+569580 Msa1134150:intron
CGATTGGGATTGCCTGATAC+AGG 0.378160 7_4:+565311 Msa1134150:CDS
TAAGACAAATAGCCTGTATC+AGG 0.383361 7_4:-565323 None:intergenic
CTGGTTCTTTATTTGGTATG+TGG 0.385738 7_4:-570535 None:intergenic
AAAAGCTTCCATCTCTTGTC+TGG 0.386562 7_4:-567047 None:intergenic
CATGCTGTTGTGCCACGATT+AGG 0.387657 7_4:-570474 None:intergenic
GCCGGCGCCACCCCTGGTGG+CGG 0.388067 7_4:+565032 Msa1134150:CDS
GATGATGCAACAGAGGAAAC+TGG 0.388348 7_4:+569624 Msa1134150:CDS
AATGTTAAGAGAACTGTTAA+GGG 0.392156 7_4:+565437 Msa1134150:CDS
AACTACCATGGAAAGGATAT+AGG 0.394104 7_4:-570679 None:intergenic
TCCTTAATTTCTTCAAAAGT+TGG 0.396934 7_4:-568161 None:intergenic
TCCGCCACAATTGGCCGCGC+CGG 0.404713 7_4:+565014 Msa1134150:CDS
TGTGTGTGACCACACGCTTT+TGG 0.411006 7_4:-566824 None:intergenic
AAGATACTTGTACATCTGTA+AGG 0.412096 7_4:+570817 Msa1134150:three_prime_UTR
AATAAAGAACCAGTTAAGTT+AGG 0.416299 7_4:+570545 Msa1134150:three_prime_UTR
GGCGCCGGCGCGGCCAATTG+TGG 0.421272 7_4:-565018 None:intergenic
GACGAGATTGGAACTGGAAA+GGG 0.424270 7_4:-565097 None:intergenic
GTTTAGAGTTCCGACGAGAT+TGG 0.427765 7_4:-565109 None:intergenic
AGTTCCGACGAGATTGGAAC+TGG 0.427959 7_4:-565103 None:intergenic
CTCATGGTGATGAAGGTAAT+TGG 0.428650 7_4:+570432 Msa1134150:three_prime_UTR
ATGAGCTGCTCCGCCACAAT+TGG 0.433929 7_4:+565005 Msa1134150:CDS
CGCGCCGGCGCCACCCCTGG+TGG 0.441487 7_4:+565029 Msa1134150:CDS
CACCAGGGGTGGCGCCGGCG+CGG 0.444288 7_4:-565028 None:intergenic
ATTGTGATTGTGGCGCGTAT+TGG 0.444681 7_4:-565131 None:intergenic
TTATCAGCATCACCAATAAC+AGG 0.448452 7_4:-565395 None:intergenic
AGGATATAGGGGTGTCTCCA+TGG 0.455671 7_4:-570666 None:intergenic
CCTCATCAAGAGACAGGGCT+TGG 0.459572 7_4:-566958 None:intergenic
GCCGGCGCGGCCAATTGTGG+CGG 0.466460 7_4:-565015 None:intergenic
CAACTCTATGCAGCTTTGGG+TGG 0.467661 7_4:+569579 Msa1134150:intron
AGAAACTCCAATCAAGGAAA+GGG 0.468628 7_4:-567271 None:intergenic
GATACAGGCTATTTGTCTTA+CGG 0.470981 7_4:+565326 Msa1134150:CDS
AAGGTAATTGGTGGAAGCTA+TGG 0.471564 7_4:+570444 Msa1134150:three_prime_UTR
GGAATCACAAACATAGTTCC+TGG 0.471978 7_4:+569478 Msa1134150:CDS
CCATATTTATTGTACACATC+AGG 0.472485 7_4:-568870 None:intergenic
TCAAGGGCATTTGCTGATGC+TGG 0.476092 7_4:+566992 Msa1134150:CDS
ATTAAAATAATTGGCAGAGA+TGG 0.480124 7_4:+568945 Msa1134150:CDS
CGTCTTATTACTCAATCTGT+TGG 0.481787 7_4:+565368 Msa1134150:CDS
GGTGATGCTGATAATGGTTA+TGG 0.483159 7_4:+565404 Msa1134150:CDS
GCAAATCTCGTTCAATCCGC+TGG 0.494635 7_4:+565245 Msa1134150:CDS
TTTATAGCTCATGGTGATGA+AGG 0.494803 7_4:+570425 Msa1134150:three_prime_UTR
TCCAGGAAATTTATAGCTCA+TGG 0.495176 7_4:+570416 Msa1134150:intron
AGAGTGCCTCATCAAGAGAC+AGG 0.495586 7_4:-566964 None:intergenic
AATATGGTGCAGATGGTTCA+AGG 0.496146 7_4:+568886 Msa1134150:CDS
TTAATGACAGAATGGGTGAC+AGG 0.501453 7_4:+569663 Msa1134150:three_prime_UTR
GCCAATATGCTTGAAGGAGG+AGG 0.502851 7_4:+567186 Msa1134150:CDS
CTCTTGATGAGGCACTCTAT+AGG 0.504181 7_4:+566969 Msa1134150:CDS
GGTGTTATAACTTCCACAAT+GGG 0.507288 7_4:-568849 None:intergenic
CCTTTCCATGGTAGTTCTTG+CGG 0.508276 7_4:+570686 Msa1134150:three_prime_UTR
TAGGAACTACAAGCATAAAT+GGG 0.513024 7_4:+570564 Msa1134150:three_prime_UTR
AAACAATATTTGATATCAGT+GGG 0.518843 7_4:+570597 Msa1134150:three_prime_UTR
AACGCAACCGCCACCAGGGG+TGG 0.521008 7_4:-565039 None:intergenic
AGTTTCTATACGAGCAATGC+AGG 0.521125 7_4:+567287 Msa1134150:CDS
TGTGATCACTTACAGGAATA+CGG 0.523923 7_4:-568986 None:intergenic
ATGATGCAACAGAGGAAACT+GGG 0.526523 7_4:+569625 Msa1134150:CDS
CAAACAATATTTGATATCAG+TGG 0.526621 7_4:+570596 Msa1134150:three_prime_UTR
GTGTAGGCCAATATGCTTGA+AGG 0.526780 7_4:+567180 Msa1134150:intron
ACTCTATGCAGCTTTGGGTG+GGG 0.528969 7_4:+569581 Msa1134150:intron
TGAGGAACGCAACCGCCACC+AGG 0.531589 7_4:-565044 None:intergenic
AAGAAAATGATGTACGGAAG+TGG 0.534287 7_4:-565073 None:intergenic
TCGTATAGAAACTCCAATCA+AGG 0.535946 7_4:-567277 None:intergenic
CCAAGCCCTGTCTCTTGATG+AGG 0.536017 7_4:+566958 Msa1134150:CDS
CGCGAAATTCTCGATTCACC+AGG 0.537885 7_4:+565185 Msa1134150:CDS
GCTGGACCTTGATGAAGTCC+TGG 0.539349 7_4:-565203 None:intergenic
CGACGAGATTGGAACTGGAA+AGG 0.540131 7_4:-565098 None:intergenic
CCTCTTGAACTTGAAGACAT+TGG 0.540684 7_4:+567228 Msa1134150:CDS
GGGACCAGATTCCAGTAAAA+GGG 0.540721 7_4:-568911 None:intergenic
AGACAGGGCTTGGCGCGCAT+CGG 0.543526 7_4:-566948 None:intergenic
GTTGGCATGCTTCCTGGAGG+AGG 0.545154 7_4:-568143 None:intergenic
GGAGGTCGTATTCCTCCTCC+AGG 0.553198 7_4:+568131 Msa1134150:CDS
TCTTGCGGCAATATATATGC+TGG 0.553689 7_4:+570701 Msa1134150:three_prime_UTR
TACAATAAATATGGTGCAGA+TGG 0.558350 7_4:+568879 Msa1134150:CDS
GGATATAGGGGTGTCTCCAT+GGG 0.559429 7_4:-570665 None:intergenic
ATGAGGCACTCTATAGGTCA+AGG 0.559464 7_4:+566975 Msa1134150:CDS
CCAATGTCTTCAAGTTCAAG+AGG 0.560685 7_4:-567228 None:intergenic
TAGAAACTCCAATCAAGGAA+AGG 0.561312 7_4:-567272 None:intergenic
CTGAGTGCGTCGAAACATGC+TGG 0.564319 7_4:-565221 None:intergenic
ACATTGCTTTCTCAACTCCA+AGG 0.571756 7_4:+569711 Msa1134150:three_prime_UTR
ACTTGCTTCCAGACAAGAGA+TGG 0.577927 7_4:+567039 Msa1134150:CDS
AAAATGATGTACGGAAGTGG+TGG 0.580400 7_4:-565070 None:intergenic
TGGATCTGATATTGTGATTG+TGG 0.581868 7_4:+566919 Msa1134150:CDS
AAACCGCTTGTGAAACATAA+CGG 0.583311 7_4:-565272 None:intergenic
TACGGCGAAATCGTCGAACA+AGG 0.589915 7_4:+565344 Msa1134150:CDS
ATTCTGGCTTAAAACTCTGA+AGG 0.591164 7_4:-570887 None:intergenic
CATTGCTTTCTCAACTCCAA+GGG 0.593091 7_4:+569712 Msa1134150:three_prime_UTR
TCCAATCAAGGAAAGGGGAT+AGG 0.598046 7_4:-567265 None:intergenic
TTTCCGTTATGTTTCACAAG+CGG 0.598196 7_4:+565269 Msa1134150:CDS
CTTTCCAGTTCCAATCTCGT+CGG 0.602346 7_4:+565099 Msa1134150:CDS
AGATACTTGTACATCTGTAA+GGG 0.607078 7_4:+570818 Msa1134150:three_prime_UTR
ATACAGGCTGGATTTCTGGA+TGG 0.607983 7_4:+569457 Msa1134150:intron
TCTCTTTGAAAGCAGCTGAT+CGG 0.610609 7_4:-568237 None:intergenic
AAAGCGTGTGGTCACACACA+GGG 0.610994 7_4:+566827 Msa1134150:CDS
AGGTGTTATAACTTCCACAA+TGG 0.614049 7_4:-568850 None:intergenic
TCACACACAGGGGAGGAAAG+TGG 0.615212 7_4:+566838 Msa1134150:CDS
GAAACTCCAATCAAGGAAAG+GGG 0.617435 7_4:-567270 None:intergenic
AAGGGGAAGAAAATGATGTA+CGG 0.618032 7_4:-565079 None:intergenic
TATTGCCGCAAGAACTACCA+TGG 0.618271 7_4:-570691 None:intergenic
GATTCACCAGGACTTCATCA+AGG 0.618760 7_4:+565197 Msa1134150:CDS
AAAAGCGTGTGGTCACACAC+AGG 0.622362 7_4:+566826 Msa1134150:CDS
AGAACATGAAATTGTGATTG+TGG 0.623320 7_4:-565141 None:intergenic
GAAAGTGGTATCGAGAGAAG+AGG 0.623798 7_4:+566853 Msa1134150:CDS
AGTTCAAGAGGAGTGAGTAT+CGG 0.627598 7_4:-567216 None:intergenic
CTACCATGGAAAGGATATAG+GGG 0.629043 7_4:-570677 None:intergenic
GATCAGCTGCTTTCAAAGAG+AGG 0.629756 7_4:+568239 Msa1134150:CDS
ACGAGATTGGAACTGGAAAG+GGG 0.630244 7_4:-565096 None:intergenic
GTGTAGTTTAAAATATCACA+TGG 0.630320 7_4:+570503 Msa1134150:three_prime_UTR
ACACCCCTATATCCTTTCCA+TGG 0.631162 7_4:+570674 Msa1134150:three_prime_UTR
CCGCAAGAACTACCATGGAA+AGG 0.631276 7_4:-570686 None:intergenic
AGGAACGCAACCGCCACCAG+GGG 0.636802 7_4:-565042 None:intergenic
GAGGAACGCAACCGCCACCA+GGG 0.638086 7_4:-565043 None:intergenic
ACTATTGGATGATGCAACAG+AGG 0.638385 7_4:+569617 Msa1134150:CDS
ATATGGTGCAGATGGTTCAA+GGG 0.645347 7_4:+568887 Msa1134150:CDS
ATGGTGATGAAGGTAATTGG+TGG 0.647130 7_4:+570435 Msa1134150:three_prime_UTR
TGAGGCACTCTATAGGTCAA+GGG 0.655122 7_4:+566976 Msa1134150:CDS
GCGCTGACTGCTATTAAAGG+AGG 0.657198 7_4:+568113 Msa1134150:CDS
TAGGCCAATATGCTTGAAGG+AGG 0.668475 7_4:+567183 Msa1134150:intron
CTAATCGTGGCACAACAGCA+TGG 0.669353 7_4:+570475 Msa1134150:three_prime_UTR
GTACGGAAGTGGTGGAGATG+AGG 0.669729 7_4:-565062 None:intergenic
CGTGTGGTCACACACAGGGG+AGG 0.673900 7_4:+566831 Msa1134150:CDS
AAAGTTGGCATGCTTCCTGG+AGG 0.678103 7_4:-568146 None:intergenic
GAGTGCCTCATCAAGAGACA+GGG 0.678992 7_4:-566963 None:intergenic
AACTATCGAAGATCCCATTG+TGG 0.679713 7_4:+568836 Msa1134150:CDS
GTTGATGCCAGAAATGAGAG+TGG 0.697095 7_4:+566899 Msa1134150:CDS
TAGGTATCTCCAAAAGCGTG+TGG 0.697406 7_4:+566815 Msa1134150:intron
AGTCATGCGAATCAAAGCTG+CGG 0.698225 7_4:+566877 Msa1134150:CDS
TATGGATTGAAGCCTAATCG+TGG 0.705342 7_4:+570462 Msa1134150:three_prime_UTR
GAAACATAACGGAAATCCAG+CGG 0.715859 7_4:-565261 None:intergenic
AAGCGTGTGGTCACACACAG+GGG 0.719574 7_4:+566828 Msa1134150:CDS
TGATGCAACAGAGGAAACTG+GGG 0.723739 7_4:+569626 Msa1134150:CDS
TTGGAGTTGAGAAAGCAATG+TGG 0.728785 7_4:-569709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAATTCAATTCATTT+AGG + chr7_4:565917-565936 Msa1134150:intron 10.0%
!! TATGAAATTGTAAAATAATT+AGG + chr7_4:566002-566021 Msa1134150:intron 10.0%
!! AAAATAATTAATGATTATCA+AGG - chr7_4:567336-567355 None:intergenic 10.0%
!!! AAATAATTAGGTTTGTTTTT+CGG + chr7_4:566014-566033 Msa1134150:intron 15.0%
!! GTATATTTAATAATTCAGTT+TGG + chr7_4:566438-566457 Msa1134150:intron 15.0%
!!! TTGTAATTTTAATACATTCA+TGG + chr7_4:566561-566580 Msa1134150:intron 15.0%
!! TCTAATAAAAATTTCATTCT+GGG - chr7_4:567736-567755 None:intergenic 15.0%
!!! ATTTTGTGATTTATGATTTT+GGG - chr7_4:567821-567840 None:intergenic 15.0%
!!! TTATTAGCTTTGTATTTTAT+TGG + chr7_4:568545-568564 Msa1134150:intron 15.0%
!!! TTTATATGTTTTACTTCTAA+AGG + chr7_4:568643-568662 Msa1134150:intron 15.0%
!! AAAAATAAAGTAAGTACATA+CGG - chr7_4:569231-569250 None:intergenic 15.0%
!!! ATTATAGAAGCATTTATAAA+TGG - chr7_4:569512-569531 None:intergenic 15.0%
!! ATGTGATTCAAAATAAAAAA+TGG - chr7_4:570844-570863 None:intergenic 15.0%
!!! CATCATAATGCTATTTTTAT+TGG - chr7_4:565834-565853 None:intergenic 20.0%
!! TATCTTCTGTTAGTAATTTA+TGG - chr7_4:566528-566547 None:intergenic 20.0%
!! AAACAATGGTTTACTTTATT+TGG + chr7_4:566597-566616 Msa1134150:intron 20.0%
!!! ATTTTGAAATATTGACAATG+TGG + chr7_4:566631-566650 Msa1134150:intron 20.0%
!! TGAAGTAATTTAAAGAAAGT+TGG - chr7_4:566778-566797 None:intergenic 20.0%
!!! TAATAGAAACATACCATTTT+TGG - chr7_4:567094-567113 None:intergenic 20.0%
!! TGATAATAGTAAAAGAAGAA+AGG + chr7_4:567122-567141 Msa1134150:intron 20.0%
!! GATAATAGTAAAAGAAGAAA+GGG + chr7_4:567123-567142 Msa1134150:intron 20.0%
!! GCTATACTAATATTTATGTA+TGG + chr7_4:567155-567174 Msa1134150:intron 20.0%
!! CTAATAAAAATTTCATTCTG+GGG - chr7_4:567735-567754 None:intergenic 20.0%
!! GTCTAATAAAAATTTCATTC+TGG - chr7_4:567737-567756 None:intergenic 20.0%
!!! ATGACTATATGATTTTAACT+TGG + chr7_4:567791-567810 Msa1134150:intron 20.0%
!!! TTTTGTGATTTATGATTTTG+GGG - chr7_4:567820-567839 None:intergenic 20.0%
!!! GATTTTGTGATTTATGATTT+TGG - chr7_4:567822-567841 None:intergenic 20.0%
!! ATAAATCACAAAATCATACT+TGG + chr7_4:567827-567846 Msa1134150:intron 20.0%
!! AAATTGTTAACCATTTGAAA+TGG - chr7_4:567868-567887 None:intergenic 20.0%
!! TGAATATGATCATTAACATT+CGG - chr7_4:567925-567944 None:intergenic 20.0%
!! ACTATCTATAATTAAGTAGA+TGG - chr7_4:568582-568601 None:intergenic 20.0%
!!! ACTCTGAGAATTAAAATAAT+TGG + chr7_4:568936-568955 Msa1134150:CDS 20.0%
!! ACAAATTTAAGAGAAAATGA+TGG + chr7_4:569021-569040 Msa1134150:intron 20.0%
!! ATAAAAACAAATCATGTAAC+TGG - chr7_4:569172-569191 None:intergenic 20.0%
!!! ATTTTGACAAATGAAAGAAA+TGG - chr7_4:569208-569227 None:intergenic 20.0%
!! ATCTCTTGTTAATATTGTTT+AGG - chr7_4:569840-569859 None:intergenic 20.0%
!! AAACAATATTTGATATCAGT+GGG + chr7_4:570597-570616 Msa1134150:three_prime_UTR 20.0%
!! AAATAAGGATTGCAAAAAAA+AGG - chr7_4:570749-570768 None:intergenic 20.0%
! AATGTTAAGAGAACTGTTAA+GGG + chr7_4:565437-565456 Msa1134150:CDS 25.0%
! TAGGAACTTACATATTAATG+TGG + chr7_4:565581-565600 Msa1134150:intron 25.0%
!!! AGGATTTAAGTTGTTTACAT+TGG + chr7_4:565748-565767 Msa1134150:intron 25.0%
! GTGAAAAAACTTTACACTAT+TGG + chr7_4:565874-565893 Msa1134150:intron 25.0%
! TGACGTTAAGTTTGTAATAT+CGG + chr7_4:566059-566078 Msa1134150:intron 25.0%
! GAGTATTATATTAGTCAGTT+TGG + chr7_4:566201-566220 Msa1134150:intron 25.0%
! TGATAATAGATCTTAACAGA+AGG + chr7_4:566327-566346 Msa1134150:intron 25.0%
!!! ATTTTAATCCTAGAATCTCT+GGG + chr7_4:566385-566404 Msa1134150:intron 25.0%
!! TTAATACATTCATGGACTAA+AGG + chr7_4:566569-566588 Msa1134150:intron 25.0%
!! TAATACATTCATGGACTAAA+GGG + chr7_4:566570-566589 Msa1134150:intron 25.0%
! CAACATGTCAAGTTATAATA+AGG - chr7_4:566745-566764 None:intergenic 25.0%
! ATATTTATGTATGGTTGTGT+AGG + chr7_4:567164-567183 Msa1134150:intron 25.0%
! GATTATCAAGGTTAAAGAAA+GGG - chr7_4:567324-567343 None:intergenic 25.0%
! TGATTATCAAGGTTAAAGAA+AGG - chr7_4:567325-567344 None:intergenic 25.0%
! CACAATTATAAACATGCTAA+AGG + chr7_4:567615-567634 Msa1134150:intron 25.0%
! AAATCATACTTGGTTGTTTA+TGG + chr7_4:567837-567856 Msa1134150:intron 25.0%
!! ATGTCTATGATTTTCTGTAT+AGG + chr7_4:568088-568107 Msa1134150:intron 25.0%
! TCCTTAATTTCTTCAAAAGT+TGG - chr7_4:568164-568183 None:intergenic 25.0%
! GAAGAAATTAAGGATACTTT+AGG + chr7_4:568170-568189 Msa1134150:CDS 25.0%
! TTGATACTTTACTACCATAA+AGG + chr7_4:568386-568405 Msa1134150:intron 25.0%
! TTTGAACTAACTATATCTCT+AGG + chr7_4:568496-568515 Msa1134150:intron 25.0%
! TAATTATAGATAGTTAGTCG+TGG + chr7_4:568588-568607 Msa1134150:intron 25.0%
!!! TTATTTTAATTCTCAGAGTC+CGG - chr7_4:568935-568954 None:intergenic 25.0%
! ATTAAAATAATTGGCAGAGA+TGG + chr7_4:568945-568964 Msa1134150:CDS 25.0%
!! AGTTATGCATATTTTCTACA+TGG + chr7_4:569312-569331 Msa1134150:intron 25.0%
! CATGATTATGTGTATGAATT+TGG + chr7_4:569354-569373 Msa1134150:intron 25.0%
! GTATATGTATTGTGAGAAAA+TGG - chr7_4:569429-569448 None:intergenic 25.0%
!! ACATATACTTTGCTATATAC+AGG + chr7_4:569441-569460 Msa1134150:intron 25.0%
!!! CTAGATTTTAATGACAGAAT+GGG + chr7_4:569656-569675 Msa1134150:exon 25.0%
! TCTTGTTAATATTGTTTAGG+AGG - chr7_4:569837-569856 None:intergenic 25.0%
! ATATCAATTAAGCTTATGTG+AGG + chr7_4:569865-569884 Msa1134150:intron 25.0%
! TGAATGTTATACCAAATAGA+AGG + chr7_4:569907-569926 Msa1134150:intron 25.0%
! TTATCATACAACTGATCTTT+AGG - chr7_4:570224-570243 None:intergenic 25.0%
!! GTGTAGTTTAAAATATCACA+TGG + chr7_4:570503-570522 Msa1134150:three_prime_UTR 25.0%
!! AACTTAACTGGTTCTTTATT+TGG - chr7_4:570545-570564 None:intergenic 25.0%
! AATAAAGAACCAGTTAAGTT+AGG + chr7_4:570545-570564 Msa1134150:three_prime_UTR 25.0%
! CAAACAATATTTGATATCAG+TGG + chr7_4:570596-570615 Msa1134150:three_prime_UTR 25.0%
!! TTATATTTTCTTTGTTCCCA+TGG + chr7_4:570649-570668 Msa1134150:three_prime_UTR 25.0%
AGAACATGAAATTGTGATTG+TGG - chr7_4:565144-565163 None:intergenic 30.0%
GAATGTTAAGAGAACTGTTA+AGG + chr7_4:565436-565455 Msa1134150:CDS 30.0%
ATGTATCCAACTAAAATCCT+TGG - chr7_4:565511-565530 None:intergenic 30.0%
GCATTATGATGTGATTTGAT+TGG + chr7_4:565843-565862 Msa1134150:intron 30.0%
TATGATGTGATTTGATTGGA+TGG + chr7_4:565847-565866 Msa1134150:intron 30.0%
!! AATTAGGTTTGTTTTTCGGT+TGG + chr7_4:566018-566037 Msa1134150:intron 30.0%
!! TTTTTCGGTTGGTATTTGTA+GGG + chr7_4:566029-566048 Msa1134150:intron 30.0%
GACGTTAAGTTTGTAATATC+GGG + chr7_4:566060-566079 Msa1134150:intron 30.0%
ACGTTAAGTTTGTAATATCG+GGG + chr7_4:566061-566080 Msa1134150:intron 30.0%
TGAAACTGAGTGAATAATGT+CGG + chr7_4:566090-566109 Msa1134150:intron 30.0%
AATAGATCATTGAATGTGTG+AGG + chr7_4:566126-566145 Msa1134150:intron 30.0%
!! CATTTTAATCCTAGAATCTC+TGG + chr7_4:566384-566403 Msa1134150:intron 30.0%
TAGTAATTTATGGACCAAAC+TGG - chr7_4:566518-566537 None:intergenic 30.0%
TTGAAATATTGACAATGTGG+AGG + chr7_4:566634-566653 Msa1134150:intron 30.0%
TACTCATCACAAATCCTTAA+TGG + chr7_4:567952-567971 Msa1134150:intron 30.0%
ATACTACAACACTCTTACAT+TGG - chr7_4:567982-568001 None:intergenic 30.0%
!! GCCAACTTTTGAAGAAATTA+AGG + chr7_4:568160-568179 Msa1134150:CDS 30.0%
! AAATACACTCTGCATCTTTT+CGG + chr7_4:568317-568336 Msa1134150:intron 30.0%
CTAATCATGAATTATGTGGA+GGG + chr7_4:568439-568458 Msa1134150:intron 30.0%
TATAGTTAGTTCAAACCAAC+AGG - chr7_4:568491-568510 None:intergenic 30.0%
CCATATTTATTGTACACATC+AGG - chr7_4:568873-568892 None:intergenic 30.0%
CCTGATGTGTACAATAAATA+TGG + chr7_4:568870-568889 Msa1134150:CDS 30.0%
TACAATAAATATGGTGCAGA+TGG + chr7_4:568879-568898 Msa1134150:CDS 30.0%
!!! TATTTTAATTCTCAGAGTCC+GGG - chr7_4:568934-568953 None:intergenic 30.0%
! TTCTCTTAAATTTGTTCAGC+TGG - chr7_4:569016-569035 None:intergenic 30.0%
GATGGTTTATTCATGTTTAC+TGG + chr7_4:569039-569058 Msa1134150:intron 30.0%
CCATAGTATGAAATCATTCA+TGG - chr7_4:569100-569119 None:intergenic 30.0%
CCATGAATGATTTCATACTA+TGG + chr7_4:569097-569116 Msa1134150:intron 30.0%
AATATGCATAACTGCAACAT+GGG - chr7_4:569305-569324 None:intergenic 30.0%
AAATATGCATAACTGCAACA+TGG - chr7_4:569306-569325 None:intergenic 30.0%
ATGGAATAGGAAATCATGTT+TGG - chr7_4:569410-569429 None:intergenic 30.0%
GTATTGTGAGAAAATGGAAT+AGG - chr7_4:569423-569442 None:intergenic 30.0%
!!! CATCATCCAATAGTTTTTTG+AGG - chr7_4:569611-569630 None:intergenic 30.0%
!! GCTAGATTTTAATGACAGAA+TGG + chr7_4:569655-569674 Msa1134150:exon 30.0%
!! TAAAGCGTTTTCCTTCTATT+TGG - chr7_4:569921-569940 None:intergenic 30.0%
! TCTTTAAAGATACAGCACAT+AGG + chr7_4:569969-569988 Msa1134150:intron 30.0%
CCATGAATAAACGTCAAATA+AGG - chr7_4:570011-570030 None:intergenic 30.0%
! CCTTATTTGACGTTTATTCA+TGG + chr7_4:570008-570027 Msa1134150:intron 30.0%
TTGGACTGTTATGAAAAGTT+GGG - chr7_4:570042-570061 None:intergenic 30.0%
ATTGGACTGTTATGAAAAGT+TGG - chr7_4:570043-570062 None:intergenic 30.0%
ATTATTCTTTGTTCCCGTTT+GGG + chr7_4:570064-570083 Msa1134150:intron 30.0%
AATAACTACTAAGCACCTAA+AGG - chr7_4:570138-570157 None:intergenic 30.0%
! TTGGTAATAAATTCCACCAA+GGG - chr7_4:570196-570215 None:intergenic 30.0%
! ATTGGTAATAAATTCCACCA+AGG - chr7_4:570197-570216 None:intergenic 30.0%
TCAGTTGTATGATAAACTTG+TGG + chr7_4:570229-570248 Msa1134150:intron 30.0%
TAGTTACTAGTCCAAAATTG+TGG - chr7_4:570274-570293 None:intergenic 30.0%
ATCACATCATTACTTAGCAT+GGG - chr7_4:570337-570356 None:intergenic 30.0%
! GTCAGGGAATTTTCTTATAT+TGG + chr7_4:570380-570399 Msa1134150:intron 30.0%
TTAGGAACTACAAGCATAAA+TGG + chr7_4:570563-570582 Msa1134150:three_prime_UTR 30.0%
TAGGAACTACAAGCATAAAT+GGG + chr7_4:570564-570583 Msa1134150:three_prime_UTR 30.0%
!!! GAAATTTTCGAGTCATAAGA+AGG - chr7_4:570727-570746 None:intergenic 30.0%
AAGATACTTGTACATCTGTA+AGG + chr7_4:570817-570836 Msa1134150:three_prime_UTR 30.0%
AGATACTTGTACATCTGTAA+GGG + chr7_4:570818-570837 Msa1134150:three_prime_UTR 30.0%
AAGAAAATGATGTACGGAAG+TGG - chr7_4:565076-565095 None:intergenic 35.0%
AAGGGGAAGAAAATGATGTA+CGG - chr7_4:565082-565101 None:intergenic 35.0%
TTTCCGTTATGTTTCACAAG+CGG + chr7_4:565269-565288 Msa1134150:CDS 35.0%
AAACCGCTTGTGAAACATAA+CGG - chr7_4:565275-565294 None:intergenic 35.0%
TAAGACAAATAGCCTGTATC+AGG - chr7_4:565326-565345 None:intergenic 35.0%
GATACAGGCTATTTGTCTTA+CGG + chr7_4:565326-565345 Msa1134150:CDS 35.0%
! CGTCTTATTACTCAATCTGT+TGG + chr7_4:565368-565387 Msa1134150:CDS 35.0%
TCTGTTGGAATTCCTGTTAT+TGG + chr7_4:565383-565402 Msa1134150:CDS 35.0%
TTATCAGCATCACCAATAAC+AGG - chr7_4:565398-565417 None:intergenic 35.0%
!! GTTATTGGTGATGCTGATAA+TGG + chr7_4:565398-565417 Msa1134150:CDS 35.0%
GTTAAGGGTTATGTTAATGC+TGG + chr7_4:565452-565471 Msa1134150:intron 35.0%
! TTTTGCTGCTATCATTCTTG+AGG + chr7_4:565475-565494 Msa1134150:intron 35.0%
! ATTTGTGAAGGTGGTGTTTT+AGG + chr7_4:565562-565581 Msa1134150:intron 35.0%
TTGTATCATTCTCGAAGATC+AGG + chr7_4:565718-565737 Msa1134150:intron 35.0%
ATGCATCAAATCATGATGTG+TGG + chr7_4:565792-565811 Msa1134150:intron 35.0%
TTAGGTGCTTGAAATTGTTG+TGG + chr7_4:565935-565954 Msa1134150:intron 35.0%
!! GTTTTTCGGTTGGTATTTGT+AGG + chr7_4:566028-566047 Msa1134150:intron 35.0%
GAAACTGAGTGAATAATGTC+GGG + chr7_4:566091-566110 Msa1134150:intron 35.0%
AAACTGAGTGAATAATGTCG+GGG + chr7_4:566092-566111 Msa1134150:intron 35.0%
CAAGGTTACTACAACATACT+TGG + chr7_4:566176-566195 Msa1134150:intron 35.0%
CTAACGAAAGACACATGTAA+GGG - chr7_4:566227-566246 None:intergenic 35.0%
ACTAACGAAAGACACATGTA+AGG - chr7_4:566228-566247 None:intergenic 35.0%
TTCATCACCTAACCTACATA+CGG - chr7_4:566275-566294 None:intergenic 35.0%
CGAAACTGAGTGAATAATGT+CGG + chr7_4:566297-566316 Msa1134150:intron 35.0%
GACTAAAGGGATCAAAACAA+TGG + chr7_4:566583-566602 Msa1134150:intron 35.0%
!!! CATTTTGCTGTTTCATTGCT+AGG + chr7_4:566796-566815 Msa1134150:intron 35.0%
TGGATCTGATATTGTGATTG+TGG + chr7_4:566919-566938 Msa1134150:CDS 35.0%
TTCTCCTCTTGTTCCAAAAA+TGG + chr7_4:567078-567097 Msa1134150:CDS 35.0%
!!! CATACCATTTTTGGAACAAG+AGG - chr7_4:567085-567104 None:intergenic 35.0%
AGAAACTCCAATCAAGGAAA+GGG - chr7_4:567274-567293 None:intergenic 35.0%
TAGAAACTCCAATCAAGGAA+AGG - chr7_4:567275-567294 None:intergenic 35.0%
TCGTATAGAAACTCCAATCA+AGG - chr7_4:567280-567299 None:intergenic 35.0%
TATCAAGGTTAAAGAAAGGG+AGG - chr7_4:567321-567340 None:intergenic 35.0%
ATTTCACCTATGCTGGAATT+GGG - chr7_4:567462-567481 None:intergenic 35.0%
! TATCAAGCTAACCAGTGTTT+TGG - chr7_4:567488-567507 None:intergenic 35.0%
AATGTATTACTGCGATAGCT+AGG - chr7_4:567513-567532 None:intergenic 35.0%
GCAAAACAATATCCAAGAAC+TGG + chr7_4:567535-567554 Msa1134150:intron 35.0%
TTGAAAACAGAACCAGTTCT+TGG - chr7_4:567550-567569 None:intergenic 35.0%
TTTGTTTCCTATACTGCTCA+TGG - chr7_4:567680-567699 None:intergenic 35.0%
! AATTTCATTCTGGGGAAAAG+TGG - chr7_4:567727-567746 None:intergenic 35.0%
ATTAGCAGAAGTAACATCCT+AGG - chr7_4:567773-567792 None:intergenic 35.0%
TATGGCAGATCCATTTCAAA+TGG + chr7_4:567855-567874 Msa1134150:intron 35.0%
! AATACACTCTGCATCTTTTC+GGG + chr7_4:568318-568337 Msa1134150:intron 35.0%
TTACTACCATAAAGGCTTGT+TGG + chr7_4:568394-568413 Msa1134150:intron 35.0%
TCGGCTAATCATGAATTATG+TGG + chr7_4:568435-568454 Msa1134150:intron 35.0%
GCTAATCATGAATTATGTGG+AGG + chr7_4:568438-568457 Msa1134150:intron 35.0%
! CTTTCTGGAGAAAACTGAAA+AGG - chr7_4:568467-568486 None:intergenic 35.0%
! CTTTTCAGTTTTCTCCAGAA+AGG + chr7_4:568465-568484 Msa1134150:intron 35.0%
! GGTGTTATAACTTCCACAAT+GGG - chr7_4:568852-568871 None:intergenic 35.0%
! AGGTGTTATAACTTCCACAA+TGG - chr7_4:568853-568872 None:intergenic 35.0%
TGTGATCACTTACAGGAATA+CGG - chr7_4:568989-569008 None:intergenic 35.0%
! ATGCTGTGAGCATTCTTTTA+TGG + chr7_4:569125-569144 Msa1134150:intron 35.0%
ATATGCATAACTGCAACATG+GGG - chr7_4:569304-569323 None:intergenic 35.0%
! ATACTTTGCTATATACAGGC+TGG + chr7_4:569445-569464 Msa1134150:intron 35.0%
!! TTATAAATGGCAAGAGTACC+AGG - chr7_4:569499-569518 None:intergenic 35.0%
TTACAACTCTATGCAGCTTT+GGG + chr7_4:569576-569595 Msa1134150:intron 35.0%
GGTCAACCTCAAAAAACTAT+TGG + chr7_4:569602-569621 Msa1134150:CDS 35.0%
TGACAGGATTCAAGTATTTC+TGG + chr7_4:569679-569698 Msa1134150:three_prime_UTR 35.0%
AGTTGAGAGAAAATTACCCT+TGG - chr7_4:569731-569750 None:intergenic 35.0%
TCAATTAAGCTTATGTGAGG+TGG + chr7_4:569868-569887 Msa1134150:intron 35.0%
CAATTAAGCTTATGTGAGGT+GGG + chr7_4:569869-569888 Msa1134150:intron 35.0%
AATTAAGCTTATGTGAGGTG+GGG + chr7_4:569870-569889 Msa1134150:intron 35.0%
CTGTTATGAAAAGTTGGGTA+AGG - chr7_4:570037-570056 None:intergenic 35.0%
CGGGAACAAAGAATAATGAT+TGG - chr7_4:570061-570080 None:intergenic 35.0%
CATTATTCTTTGTTCCCGTT+TGG + chr7_4:570063-570082 Msa1134150:intron 35.0%
TTATTCTTTGTTCCCGTTTG+GGG + chr7_4:570065-570084 Msa1134150:intron 35.0%
AAAATATCACAACCCCCAAA+CGG - chr7_4:570081-570100 None:intergenic 35.0%
TAGATATTTCGTCAGCCTTT+AGG + chr7_4:570120-570139 Msa1134150:intron 35.0%
! AACTGATCTTTAGGAGAGAT+TGG - chr7_4:570215-570234 None:intergenic 35.0%
! AGCTTGTGTAACCACAATTT+TGG + chr7_4:570260-570279 Msa1134150:intron 35.0%
! CAAATTTGGCTATGGTGTTA+CGG - chr7_4:570297-570316 None:intergenic 35.0%
AACACCATAGCCAAATTTGA+AGG + chr7_4:570298-570317 Msa1134150:intron 35.0%
ACACCATAGCCAAATTTGAA+GGG + chr7_4:570299-570318 Msa1134150:intron 35.0%
TCTCTAACTCCCTTCAAATT+TGG - chr7_4:570311-570330 None:intergenic 35.0%
CATCACATCATTACTTAGCA+TGG - chr7_4:570338-570357 None:intergenic 35.0%
CATGCTAAGTAATGATGTGA+TGG + chr7_4:570336-570355 Msa1134150:intron 35.0%
ACTTCCTATAGTATCATGTC+AGG + chr7_4:570363-570382 Msa1134150:intron 35.0%
CTTCCTATAGTATCATGTCA+GGG + chr7_4:570364-570383 Msa1134150:intron 35.0%
ATTCCCTGACATGATACTAT+AGG - chr7_4:570370-570389 None:intergenic 35.0%
TCCAGGAAATTTATAGCTCA+TGG + chr7_4:570416-570435 Msa1134150:intron 35.0%
ACCATGAGCTATAAATTTCC+TGG - chr7_4:570420-570439 None:intergenic 35.0%
! TTTATAGCTCATGGTGATGA+AGG + chr7_4:570425-570444 Msa1134150:three_prime_UTR 35.0%
! CTGGTTCTTTATTTGGTATG+TGG - chr7_4:570538-570557 None:intergenic 35.0%
CTTGTAGTTCCTAACTTAAC+TGG - chr7_4:570557-570576 None:intergenic 35.0%
ACTACCATGGAAAGGATATA+GGG - chr7_4:570681-570700 None:intergenic 35.0%
AACTACCATGGAAAGGATAT+AGG - chr7_4:570682-570701 None:intergenic 35.0%
!! ATTCTGGCTTAAAACTCTGA+AGG - chr7_4:570890-570909 None:intergenic 35.0%
AAAATGATGTACGGAAGTGG+TGG - chr7_4:565073-565092 None:intergenic 40.0%
! GAAACATAACGGAAATCCAG+CGG - chr7_4:565264-565283 None:intergenic 40.0%
TTCTATCTCTGCTTCTCGAT+TGG + chr7_4:565295-565314 Msa1134150:CDS 40.0%
TCTATCTCTGCTTCTCGATT+GGG + chr7_4:565296-565315 Msa1134150:CDS 40.0%
!! GGTGATGCTGATAATGGTTA+TGG + chr7_4:565404-565423 Msa1134150:CDS 40.0%
TGCTATCATTCTTGAGGATC+AGG + chr7_4:565481-565500 Msa1134150:intron 40.0%
!! GGTTAGCCAAGGATTTTAGT+TGG + chr7_4:565502-565521 Msa1134150:intron 40.0%
TGTGTGGATATTTGTGAAGG+TGG + chr7_4:565553-565572 Msa1134150:intron 40.0%
AGATCATTGAATGTGTGAGG+TGG + chr7_4:566129-566148 Msa1134150:intron 40.0%
!! GTGGTGTTACTATAGTCTCT+GGG + chr7_4:566148-566167 Msa1134150:intron 40.0%
TATAGTCTCTGGGTGTATCA+AGG + chr7_4:566158-566177 Msa1134150:intron 40.0%
TTGATACACCCAGAGATTCT+AGG - chr7_4:566396-566415 None:intergenic 40.0%
TTATGGACCAAACTGGCTAA+CGG - chr7_4:566511-566530 None:intergenic 40.0%
TATTGACAATGTGGAGGACT+AGG + chr7_4:566640-566659 Msa1134150:intron 40.0%
TGATACGGTTCAACAGTTTC+AGG + chr7_4:566664-566683 Msa1134150:intron 40.0%
GATACGGTTCAACAGTTTCA+GGG + chr7_4:566665-566684 Msa1134150:intron 40.0%
ATACGGTTCAACAGTTTCAG+GGG + chr7_4:566666-566685 Msa1134150:intron 40.0%
ATCAGATCCACTCTCATTTC+TGG - chr7_4:566909-566928 None:intergenic 40.0%
AAAAGCTTCCATCTCTTGTC+TGG - chr7_4:567050-567069 None:intergenic 40.0%
AGTTCAAGAGGAGTGAGTAT+CGG - chr7_4:567219-567238 None:intergenic 40.0%
! CCAATGTCTTCAAGTTCAAG+AGG - chr7_4:567231-567250 None:intergenic 40.0%
CCTCTTGAACTTGAAGACAT+TGG + chr7_4:567228-567247 Msa1134150:CDS 40.0%
GAAACTCCAATCAAGGAAAG+GGG - chr7_4:567273-567292 None:intergenic 40.0%
AGTTTCTATACGAGCAATGC+AGG + chr7_4:567287-567306 Msa1134150:CDS 40.0%
TACTACAGAAAAGTGGCTCT+TGG - chr7_4:567400-567419 None:intergenic 40.0%
CTCAGACTACTACAGAAAAG+TGG - chr7_4:567407-567426 None:intergenic 40.0%
ATGATACCCAATTCCAGCAT+AGG + chr7_4:567453-567472 Msa1134150:intron 40.0%
CATTTCACCTATGCTGGAAT+TGG - chr7_4:567463-567482 None:intergenic 40.0%
TTGGTTCATTTCACCTATGC+TGG - chr7_4:567469-567488 None:intergenic 40.0%
GGTGAAATGAACCAAAACAC+TGG + chr7_4:567474-567493 Msa1134150:intron 40.0%
ACACAATCCATGAGCAGTAT+AGG + chr7_4:567670-567689 Msa1134150:intron 40.0%
CATCACAAATCCTTAATGGC+AGG + chr7_4:567956-567975 Msa1134150:intron 40.0%
! TCTCTTTGAAAGCAGCTGAT+CGG - chr7_4:568240-568259 None:intergenic 40.0%
AACTATCGAAGATCCCATTG+TGG + chr7_4:568836-568855 Msa1134150:CDS 40.0%
AATATGGTGCAGATGGTTCA+AGG + chr7_4:568886-568905 Msa1134150:CDS 40.0%
ATATGGTGCAGATGGTTCAA+GGG + chr7_4:568887-568906 Msa1134150:CDS 40.0%
!! TATGGAGTTCTGAAACATCG+TGG + chr7_4:569143-569162 Msa1134150:intron 40.0%
CTATATACAGGCTGGATTTC+TGG + chr7_4:569453-569472 Msa1134150:intron 40.0%
GGAATCACAAACATAGTTCC+TGG + chr7_4:569478-569497 Msa1134150:CDS 40.0%
GTTACAACTCTATGCAGCTT+TGG + chr7_4:569575-569594 Msa1134150:intron 40.0%
ACTATTGGATGATGCAACAG+AGG + chr7_4:569617-569636 Msa1134150:CDS 40.0%
ATGATGCAACAGAGGAAACT+GGG + chr7_4:569625-569644 Msa1134150:CDS 40.0%
TTAATGACAGAATGGGTGAC+AGG + chr7_4:569663-569682 Msa1134150:three_prime_UTR 40.0%
TTGGAGTTGAGAAAGCAATG+TGG - chr7_4:569712-569731 None:intergenic 40.0%
ACATTGCTTTCTCAACTCCA+AGG + chr7_4:569711-569730 Msa1134150:three_prime_UTR 40.0%
CATTGCTTTCTCAACTCCAA+GGG + chr7_4:569712-569731 Msa1134150:three_prime_UTR 40.0%
ATTAAGCTTATGTGAGGTGG+GGG + chr7_4:569871-569890 Msa1134150:intron 40.0%
!! AGAGAGCTCTGAGATTCTTT+GGG - chr7_4:569952-569971 None:intergenic 40.0%
!! AAGAGAGCTCTGAGATTCTT+TGG - chr7_4:569953-569972 None:intergenic 40.0%
! CAGCACATAGGTTCAGATTT+TGG + chr7_4:569981-570000 Msa1134150:intron 40.0%
TATTCTTTGTTCCCGTTTGG+GGG + chr7_4:570066-570085 Msa1134150:intron 40.0%
AAATATCACAACCCCCAAAC+GGG - chr7_4:570080-570099 None:intergenic 40.0%
! GTTTGGGGGTTGTGATATTT+TGG + chr7_4:570080-570099 Msa1134150:intron 40.0%
AAGCTATATGATGTCTCCCT+TGG + chr7_4:570177-570196 Msa1134150:intron 40.0%
ACTCCCTTCAAATTTGGCTA+TGG - chr7_4:570305-570324 None:intergenic 40.0%
ACATCATTACTTAGCATGGG+TGG - chr7_4:570334-570353 None:intergenic 40.0%
TTGGTTTATGATGCTGTTCC+AGG + chr7_4:570399-570418 Msa1134150:intron 40.0%
! CTCATGGTGATGAAGGTAAT+TGG + chr7_4:570432-570451 Msa1134150:three_prime_UTR 40.0%
! ATGGTGATGAAGGTAATTGG+TGG + chr7_4:570435-570454 Msa1134150:three_prime_UTR 40.0%
AAGGTAATTGGTGGAAGCTA+TGG + chr7_4:570444-570463 Msa1134150:three_prime_UTR 40.0%
! TATGGATTGAAGCCTAATCG+TGG + chr7_4:570462-570481 Msa1134150:three_prime_UTR 40.0%
CTACCATGGAAAGGATATAG+GGG - chr7_4:570680-570699 None:intergenic 40.0%
TCTTGCGGCAATATATATGC+TGG + chr7_4:570701-570720 Msa1134150:three_prime_UTR 40.0%
ACGAGATTGGAACTGGAAAG+GGG - chr7_4:565099-565118 None:intergenic 45.0%
GACGAGATTGGAACTGGAAA+GGG - chr7_4:565100-565119 None:intergenic 45.0%
CTTTCCAGTTCCAATCTCGT+CGG + chr7_4:565099-565118 Msa1134150:CDS 45.0%
! GTTTAGAGTTCCGACGAGAT+TGG - chr7_4:565112-565131 None:intergenic 45.0%
ATTGTGATTGTGGCGCGTAT+TGG - chr7_4:565134-565153 None:intergenic 45.0%
GATTCACCAGGACTTCATCA+AGG + chr7_4:565197-565216 Msa1134150:CDS 45.0%
TCAAATCATGTCACGCTGTG+TGG + chr7_4:565537-565556 Msa1134150:intron 45.0%
CGCTGTGTGGATATTTGTGA+AGG + chr7_4:565550-565569 Msa1134150:intron 45.0%
! CTCGAAGATCAGGTTAGCTA+AGG + chr7_4:565728-565747 Msa1134150:intron 45.0%
!! GGTGGTGTTACTATAGTCTC+TGG + chr7_4:566147-566166 Msa1134150:intron 45.0%
CATACGTGTCTTCCGTATGT+AGG + chr7_4:566260-566279 Msa1134150:intron 45.0%
GTGTCTTCCGTATGTAGGTT+AGG + chr7_4:566265-566284 Msa1134150:intron 45.0%
!! TGTGGAGGACTAGGTTGATA+CGG + chr7_4:566649-566668 Msa1134150:intron 45.0%
! TAGGTATCTCCAAAAGCGTG+TGG + chr7_4:566815-566834 Msa1134150:intron 45.0%
! GAAAGTGGTATCGAGAGAAG+AGG + chr7_4:566853-566872 Msa1134150:CDS 45.0%
AGTCATGCGAATCAAAGCTG+CGG + chr7_4:566877-566896 Msa1134150:CDS 45.0%
GTTGATGCCAGAAATGAGAG+TGG + chr7_4:566899-566918 Msa1134150:CDS 45.0%
! CTCTTGATGAGGCACTCTAT+AGG + chr7_4:566969-566988 Msa1134150:CDS 45.0%
! ATGAGGCACTCTATAGGTCA+AGG + chr7_4:566975-566994 Msa1134150:CDS 45.0%
! TGAGGCACTCTATAGGTCAA+GGG + chr7_4:566976-566995 Msa1134150:CDS 45.0%
ACTTGCTTCCAGACAAGAGA+TGG + chr7_4:567039-567058 Msa1134150:CDS 45.0%
GTGTAGGCCAATATGCTTGA+AGG + chr7_4:567180-567199 Msa1134150:intron 45.0%
TAGGCCAATATGCTTGAAGG+AGG + chr7_4:567183-567202 Msa1134150:intron 45.0%
TCCAATCAAGGAAAGGGGAT+AGG - chr7_4:567268-567287 None:intergenic 45.0%
ATACGAGCAATGCAGGTACA+TGG + chr7_4:567294-567313 Msa1134150:intron 45.0%
!! AAAAGTGGACTGACACTGGT+TGG - chr7_4:567712-567731 None:intergenic 45.0%
AGACTAGAATAGATGCGCCT+AGG + chr7_4:567753-567772 Msa1134150:intron 45.0%
! CTTACATTGGCCTGCCATTA+AGG - chr7_4:567969-567988 None:intergenic 45.0%
!! GATGCGCTGACTGCTATTAA+AGG + chr7_4:568110-568129 Msa1134150:CDS 45.0%
TCAAAAGTTGGCATGCTTCC+TGG - chr7_4:568152-568171 None:intergenic 45.0%
! GATCAGCTGCTTTCAAAGAG+AGG + chr7_4:568239-568258 Msa1134150:CDS 45.0%
! AGCTGCTTTCAAAGAGAGGT+TGG + chr7_4:568243-568262 Msa1134150:intron 45.0%
CCAAGTCCAACAAGCCTTTA+TGG - chr7_4:568403-568422 None:intergenic 45.0%
!! CCATAAAGGCTTGTTGGACT+TGG + chr7_4:568400-568419 Msa1134150:intron 45.0%
!! TAAAGGCTTGTTGGACTTGG+TGG + chr7_4:568403-568422 Msa1134150:intron 45.0%
!! AAAGGCTTGTTGGACTTGGT+GGG + chr7_4:568404-568423 Msa1134150:intron 45.0%
! TTTTCTCCAGAAAGGCCTGT+TGG + chr7_4:568473-568492 Msa1134150:intron 45.0%
TTCAAACCAACAGGCCTTTC+TGG - chr7_4:568482-568501 None:intergenic 45.0%
GGGACCAGATTCCAGTAAAA+GGG - chr7_4:568914-568933 None:intergenic 45.0%
! CTTTTACTGGAATCTGGTCC+CGG + chr7_4:568913-568932 Msa1134150:CDS 45.0%
! TGGAGAGTGTGATCACTTAC+AGG - chr7_4:568996-569015 None:intergenic 45.0%
AGCCTCTTATGCAAGCAATG+TGG + chr7_4:569264-569283 Msa1134150:intron 45.0%
TAACTGCAACATGGGGTGAA+AGG - chr7_4:569297-569316 None:intergenic 45.0%
! ATACAGGCTGGATTTCTGGA+TGG + chr7_4:569457-569476 Msa1134150:intron 45.0%
!! AACTCTATGCAGCTTTGGGT+GGG + chr7_4:569580-569599 Msa1134150:intron 45.0%
GATGATGCAACAGAGGAAAC+TGG + chr7_4:569624-569643 Msa1134150:CDS 45.0%
TGATGCAACAGAGGAAACTG+GGG + chr7_4:569626-569645 Msa1134150:CDS 45.0%
TTAAGCTTATGTGAGGTGGG+GGG + chr7_4:569872-569891 Msa1134150:intron 45.0%
CTATATGATGTCTCCCTTGG+TGG + chr7_4:570180-570199 Msa1134150:intron 45.0%
ACACCCCTATATCCTTTCCA+TGG + chr7_4:570674-570693 Msa1134150:three_prime_UTR 45.0%
CCTTTCCATGGTAGTTCTTG+CGG + chr7_4:570686-570705 Msa1134150:three_prime_UTR 45.0%
TATTGCCGCAAGAACTACCA+TGG - chr7_4:570694-570713 None:intergenic 45.0%
!! GAATAAAATAAAATAAAATA+AGG - chr7_4:570764-570783 None:intergenic 5.0%
CGACGAGATTGGAACTGGAA+AGG - chr7_4:565101-565120 None:intergenic 50.0%
AGTTCCGACGAGATTGGAAC+TGG - chr7_4:565106-565125 None:intergenic 50.0%
CGCGAAATTCTCGATTCACC+AGG + chr7_4:565185-565204 Msa1134150:CDS 50.0%
GCAAATCTCGTTCAATCCGC+TGG + chr7_4:565245-565264 Msa1134150:CDS 50.0%
CGATTGGGATTGCCTGATAC+AGG + chr7_4:565311-565330 Msa1134150:CDS 50.0%
TACGGCGAAATCGTCGAACA+AGG + chr7_4:565344-565363 Msa1134150:CDS 50.0%
! CTTGAGGATCAGGTTAGCCA+AGG + chr7_4:565491-565510 Msa1134150:intron 50.0%
GTGTCTTCCGTTAGCCAGTT+TGG + chr7_4:566501-566520 Msa1134150:intron 50.0%
! TGTGTGTGACCACACGCTTT+TGG - chr7_4:566827-566846 None:intergenic 50.0%
! AAAAGCGTGTGGTCACACAC+AGG + chr7_4:566826-566845 Msa1134150:CDS 50.0%
AAAGCGTGTGGTCACACACA+GGG + chr7_4:566827-566846 Msa1134150:CDS 50.0%
GAGTGCCTCATCAAGAGACA+GGG - chr7_4:566966-566985 None:intergenic 50.0%
! AGAGTGCCTCATCAAGAGAC+AGG - chr7_4:566967-566986 None:intergenic 50.0%
!! TCAAGGGCATTTGCTGATGC+TGG + chr7_4:566992-567011 Msa1134150:CDS 50.0%
GCCAATATGCTTGAAGGAGG+AGG + chr7_4:567186-567205 Msa1134150:CDS 50.0%
GCCTCCTCCTTCAAGCATAT+TGG - chr7_4:567190-567209 None:intergenic 50.0%
GCCTATCCCCTTTCCTTGAT+TGG + chr7_4:567264-567283 Msa1134150:CDS 50.0%
!! GCGCTGACTGCTATTAAAGG+AGG + chr7_4:568113-568132 Msa1134150:CDS 50.0%
AAAGTTGGCATGCTTCCTGG+AGG - chr7_4:568149-568168 None:intergenic 50.0%
! GGTTCAAGGGACCCTTTTAC+TGG + chr7_4:568900-568919 Msa1134150:CDS 50.0%
! GGGACCCTTTTACTGGAATC+TGG + chr7_4:568907-568926 Msa1134150:CDS 50.0%
CGGGACCAGATTCCAGTAAA+AGG - chr7_4:568915-568934 None:intergenic 50.0%
CGCCACATTGCTTGCATAAG+AGG - chr7_4:569269-569288 None:intergenic 50.0%
!! CAACTCTATGCAGCTTTGGG+TGG + chr7_4:569579-569598 Msa1134150:intron 50.0%
!! ACTCTATGCAGCTTTGGGTG+GGG + chr7_4:569581-569600 Msa1134150:intron 50.0%
CATGCTGTTGTGCCACGATT+AGG - chr7_4:570477-570496 None:intergenic 50.0%
CTAATCGTGGCACAACAGCA+TGG + chr7_4:570475-570494 Msa1134150:three_prime_UTR 50.0%
!! GGATATAGGGGTGTCTCCAT+GGG - chr7_4:570668-570687 None:intergenic 50.0%
!! AGGATATAGGGGTGTCTCCA+TGG - chr7_4:570669-570688 None:intergenic 50.0%
CCGCAAGAACTACCATGGAA+AGG - chr7_4:570689-570708 None:intergenic 50.0%
ATGAGCTGCTCCGCCACAAT+TGG + chr7_4:565005-565024 Msa1134150:CDS 55.0%
! GTACGGAAGTGGTGGAGATG+AGG - chr7_4:565065-565084 None:intergenic 55.0%
GCTGGACCTTGATGAAGTCC+TGG - chr7_4:565206-565225 None:intergenic 55.0%
CTGAGTGCGTCGAAACATGC+TGG - chr7_4:565224-565243 None:intergenic 55.0%
AAGCGTGTGGTCACACACAG+GGG + chr7_4:566828-566847 Msa1134150:CDS 55.0%
TCACACACAGGGGAGGAAAG+TGG + chr7_4:566838-566857 Msa1134150:CDS 55.0%
CCTCATCAAGAGACAGGGCT+TGG - chr7_4:566961-566980 None:intergenic 55.0%
CCAAGCCCTGTCTCTTGATG+AGG + chr7_4:566958-566977 Msa1134150:CDS 55.0%
! GTGGACTGACACTGGTTGGA+TGG - chr7_4:567708-567727 None:intergenic 55.0%
!! GGGGAAAAGTGGACTGACAC+TGG - chr7_4:567716-567735 None:intergenic 55.0%
!! GCTTGTTGGACTTGGTGGGA+GGG + chr7_4:568408-568427 Msa1134150:intron 55.0%
!! CTTGTTGGACTTGGTGGGAG+GGG + chr7_4:568409-568428 Msa1134150:intron 55.0%
!! TTGTTGGACTTGGTGGGAGG+GGG + chr7_4:568410-568429 Msa1134150:intron 55.0%
GGAGGTCGTATTCCTCCTCC+AGG + chr7_4:568131-568150 Msa1134150:CDS 60.0%
GTTGGCATGCTTCCTGGAGG+AGG - chr7_4:568146-568165 None:intergenic 60.0%
!! GGCTTGTTGGACTTGGTGGG+AGG + chr7_4:568407-568426 Msa1134150:intron 60.0%
!! TGTTGGACTTGGTGGGAGGG+GGG + chr7_4:568411-568430 Msa1134150:intron 60.0%
AGCTTATGTGAGGTGGGGGG+TGG + chr7_4:569875-569894 Msa1134150:intron 60.0%
ATGTGAGGTGGGGGGTGGAA+AGG + chr7_4:569880-569899 Msa1134150:intron 60.0%
AGGAACGCAACCGCCACCAG+GGG - chr7_4:565045-565064 None:intergenic 65.0%
GAGGAACGCAACCGCCACCA+GGG - chr7_4:565046-565065 None:intergenic 65.0%
TGAGGAACGCAACCGCCACC+AGG - chr7_4:565047-565066 None:intergenic 65.0%
CGTGTGGTCACACACAGGGG+AGG + chr7_4:566831-566850 Msa1134150:CDS 65.0%
AGACAGGGCTTGGCGCGCAT+CGG - chr7_4:566951-566970 None:intergenic 65.0%
!! GTTGGACTTGGTGGGAGGGG+GGG + chr7_4:568412-568431 Msa1134150:intron 65.0%
TCCGCCACAATTGGCCGCGC+CGG + chr7_4:565014-565033 Msa1134150:CDS 70.0%
AACGCAACCGCCACCAGGGG+TGG - chr7_4:565042-565061 None:intergenic 70.0%
!! GACTTGGTGGGAGGGGGGGT+CGG + chr7_4:568416-568435 Msa1134150:intron 70.0%
GCCGGCGCGGCCAATTGTGG+CGG - chr7_4:565018-565037 None:intergenic 75.0%
!!! GGCGCCGGCGCGGCCAATTG+TGG - chr7_4:565021-565040 None:intergenic 80.0%
! ACCGCCACCAGGGGTGGCGC+CGG - chr7_4:565036-565055 None:intergenic 80.0%
!!! CACCAGGGGTGGCGCCGGCG+CGG - chr7_4:565031-565050 None:intergenic 85.0%
! GCCGGCGCCACCCCTGGTGG+CGG + chr7_4:565032-565051 Msa1134150:CDS 85.0%
!! CGCGCCGGCGCCACCCCTGG+TGG + chr7_4:565029-565048 Msa1134150:CDS 90.0%
!! GGCCGCGCCGGCGCCACCCC+TGG + chr7_4:565026-565045 Msa1134150:CDS 95.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 565005 570922 565005 ID=Msa1134150;Name=Msa1134150
chr7_4 mRNA 565005 570922 565005 ID=Msa1134150-mRNA-1;Parent=Msa1134150;Name=Msa1134150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.85|0.87|1|0.85|0.75|8|576|446
chr7_4 exon 565005 565463 565005 ID=Msa1134150-mRNA-1:exon:158;Parent=Msa1134150-mRNA-1
chr7_4 exon 566818 567099 566818 ID=Msa1134150-mRNA-1:exon:159;Parent=Msa1134150-mRNA-1
chr7_4 exon 567186 567308 567186 ID=Msa1134150-mRNA-1:exon:160;Parent=Msa1134150-mRNA-1
chr7_4 exon 568110 568260 568110 ID=Msa1134150-mRNA-1:exon:161;Parent=Msa1134150-mRNA-1
chr7_4 exon 568775 568995 568775 ID=Msa1134150-mRNA-1:exon:162;Parent=Msa1134150-mRNA-1
chr7_4 exon 569463 569499 569463 ID=Msa1134150-mRNA-1:exon:163;Parent=Msa1134150-mRNA-1
chr7_4 exon 569592 569733 569592 ID=Msa1134150-mRNA-1:exon:164;Parent=Msa1134150-mRNA-1
chr7_4 exon 570421 570922 570421 ID=Msa1134150-mRNA-1:exon:165;Parent=Msa1134150-mRNA-1
chr7_4 CDS 565005 565463 565005 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 CDS 566818 567099 566818 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 CDS 567186 567308 567186 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 CDS 568110 568260 568110 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 CDS 568775 568995 568775 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 CDS 569463 569499 569463 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 CDS 569592 569659 569592 ID=Msa1134150-mRNA-1:cds;Parent=Msa1134150-mRNA-1
chr7_4 three_prime_UTR 569660 569733 569660 ID=Msa1134150-mRNA-1:three_prime_utr;Parent=Msa1134150-mRNA-1
chr7_4 three_prime_UTR 570421 570922 570421 ID=Msa1134150-mRNA-1:three_prime_utr;Parent=Msa1134150-mRNA-1
Gene Sequence

>Msa1134150

ATGAGCTGCTCCGCCACAATTGGCCGCGCCGGCGCCACCCCTGGTGGCGGTTGCGTTCCTCATCTCCACCACTTCCGTACATCATTTTCTTCCCCTTTCCAGTTCCAATCTCGTCGGAACTCTAAACCAATACGCGCCACAATCACAATTTCATGTTCTTCAATCAAAGCGAAGCAACTTCGCGAAATTCTCGATTCACCAGGACTTCATCAAGGTCCAGCATGTTTCGACGCACTCAGTGCAAATCTCGTTCAATCCGCTGGATTTCCGTTATGTTTCACAAGCGGTTTTTCTATCTCTGCTTCTCGATTGGGATTGCCTGATACAGGCTATTTGTCTTACGGCGAAATCGTCGAACAAGGTCGTCTTATTACTCAATCTGTTGGAATTCCTGTTATTGGTGATGCTGATAATGGTTATGGTAATGCTATGAATGTTAAGAGAACTGTTAAGGGTTATGTATCTCCAAAAGCGTGTGGTCACACACAGGGGAGGAAAGTGGTATCGAGAGAAGAGGCAGTCATGCGAATCAAAGCTGCGGTTGATGCCAGAAATGAGAGTGGATCTGATATTGTGATTGTGGCTCGCACCGATGCGCGCCAAGCCCTGTCTCTTGATGAGGCACTCTATAGGTCAAGGGCATTTGCTGATGCTGGAGCTGATGTTGTTTTTATAGACGCACTTGCTTCCAGACAAGAGATGGAAGCTTTTTGTCAAGTTTCTCCTCTTGTTCCAAAAATGGCCAATATGCTTGAAGGAGGAGGCAAAACACCGATACTCACTCCTCTTGAACTTGAAGACATTGGTTATAAAATTGTTGCCTATCCCCTTTCCTTGATTGGAGTTTCTATACGAGCAATGCAGGATGCGCTGACTGCTATTAAAGGAGGTCGTATTCCTCCTCCAGGAAGCATGCCAACTTTTGAAGAAATTAAGGATACTTTAGGTTTCAACGCATATTATGAAGAAGAGAAGCGTTATGCTACAAGTACCGATCAGCTGCTTTCAAAGAGAGAGAGCAGTAGCGTATACAGTATACAACAGAGAGAGCAAGTTGATACAGAGCAGACAAGTCAAACTATCGAAGATCCCATTGTGGAAGTTATAACACCTGATGTGTACAATAAATATGGTGCAGATGGTTCAAGGGACCCTTTTACTGGAATCTGGTCCCGGACTCTGAGAATTAAAATAATTGGCAGAGATGGAGTCGAGAAACTTGATCTCCGTATTCCTGCTGGATTTCTGGATGGAATCACAAACATAGTTCCTGCTTTGGGTGGGGTCAACCTCAAAAAACTATTGGATGATGCAACAGAGGAAACTGGGGAAAACTGCTAG
Protein sequence

>Msa1134150

MSCSATIGRAGATPGGGCVPHLHHFRTSFSSPFQFQSRRNSKPIRATITISCSSIKAKQLREILDSPGLHQGPACFDALSANLVQSAGFPLCFTSGFSISASRLGLPDTGYLSYGEIVEQGRLITQSVGIPVIGDADNGYGNAMNVKRTVKGYVSPKACGHTQGRKVVSREEAVMRIKAAVDARNESGSDIVIVARTDARQALSLDEALYRSRAFADAGADVVFIDALASRQEMEAFCQVSPLVPKMANMLEGGGKTPILTPLELEDIGYKIVAYPLSLIGVSIRAMQDALTAIKGGRIPPPGSMPTFEEIKDTLGFNAYYEEEKRYATSTDQLLSKRESSSVYSIQQREQVDTEQTSQTIEDPIVEVITPDVYNKYGADGSRDPFTGIWSRTLRIKIIGRDGVEKLDLRIPAGFLDGITNIVPALGGVNLKKLLDDATEETGENC*