AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087410 MtrunA17_Chr7g0214751 97.917 240 5 0 1 240 1 240 2.17e-174 479
Msa1087410 MtrunA17_Chr8g0335211 30.201 149 71 5 90 237 87 203 2.98e-12 63.9
Msa1087410 MtrunA17_Chr1g0179231 31.915 141 83 3 102 235 79 213 2.17e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087410 AT5G13410.1 73.934 211 51 1 34 240 46 256 7.01e-113 324
Msa1087410 AT5G13410.2 67.722 158 47 1 34 187 46 203 5.00e-72 219
Msa1087410 AT5G13410.3 65.493 142 43 2 34 169 46 187 1.43e-58 184
Msa1087410 AT4G19830.1 32.000 150 81 4 97 235 83 222 4.75e-13 66.6
Msa1087410 AT3G60370.1 28.671 143 70 4 95 237 114 224 1.22e-11 63.2
Msa1087410 AT3G60370.2 28.671 143 70 4 95 237 143 253 1.47e-11 63.2

Find 74 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 7_3:+164646 None:intergenic
AATTAGAACACGTATTTATT+TGG 0.192325 7_3:+166661 None:intergenic
AGTACCAGAGATTGAGATTT+AGG 0.204966 7_3:+166496 None:intergenic
ACTACTGTCTCTCCTTTCTT+TGG 0.230123 7_3:+164640 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 7_3:-166119 Msa1087410:CDS
GATTCGGTTTCTACGTAGTC+TGG 0.296521 7_3:+164787 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 7_3:+162902 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 7_3:-163448 Msa1087410:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 7_3:-164309 Msa1087410:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 7_3:+162669 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 7_3:-164335 Msa1087410:intron
CGAATCTGGACTCCAGTATA+AGG 0.349702 7_3:-164770 Msa1087410:intron
GCGCTTAGAGGGAAGGATTA+TGG 0.359617 7_3:-164829 Msa1087410:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 7_3:+166395 None:intergenic
CATACAGTGCCTGCGCTTAG+AGG 0.369660 7_3:-164841 Msa1087410:intron
CCTGAGAGTGATTATAATAA+AGG 0.373753 7_3:-162929 Msa1087410:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 7_3:+162944 None:intergenic
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 7_3:-163449 Msa1087410:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 7_3:-164670 Msa1087410:CDS
CGTGCTGCATCACCTTATAC+TGG 0.421611 7_3:+164758 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 7_3:-164334 Msa1087410:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 7_3:+162903 None:intergenic
GACTACGTAGAAACCGAATC+TGG 0.424093 7_3:-164784 Msa1087410:CDS
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7_3:-166386 Msa1087410:intron
ATCAAAATTGTCGCATAGGC+AGG 0.436623 7_3:+162221 None:intergenic
ATATCACCACCAAAACATTC+AGG 0.437986 7_3:-162678 Msa1087410:intron
ACTCTTACCGAGAATGTTGT+AGG 0.441297 7_3:+162896 None:intergenic
GAAGGATCAATCAATGATAC+TGG 0.446572 7_3:+162505 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 7_3:+164771 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 7_3:-162903 Msa1087410:intron
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7_3:+166522 None:intergenic
AAATATGCAGGGTGATGATA+AGG 0.476575 7_3:-164156 Msa1087410:intron
TTTACAGGGCCAACGAGCCT+TGG 0.477434 7_3:-162808 Msa1087410:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7_3:+166516 None:intergenic
TTTCTGGTTATGTTCTCCAT+AGG 0.483197 7_3:-162467 Msa1087410:three_prime_UTR
CCTTTATTATAATCACTCTC+AGG 0.484019 7_3:+162929 None:intergenic
AAAATACTCACAAGGTATGA+AGG 0.485375 7_3:+162487 None:intergenic
GTACTGTACTTTGTGTTGTG+TGG 0.489766 7_3:+166574 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 7_3:-166147 Msa1087410:CDS
TCTACCTAAATCTCAATCTC+TGG 0.493829 7_3:-166500 Msa1087410:intron
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7_3:-166557 Msa1087410:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 7_3:-164262 Msa1087410:intron
ATAATTGTACCACCAGAACT+TGG 0.512580 7_3:-162956 Msa1087410:CDS
GTACTTTGTGTTGTGTGGAA+TGG 0.513767 7_3:+166579 None:intergenic
CTGACCGGAGAAAGAAGAAT+CGG 0.525266 7_3:+166382 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 7_3:-163447 Msa1087410:CDS
GCAACAGCCTCTTCAAAAGC+AGG 0.542551 7_3:+163464 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 7_3:-164276 Msa1087410:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 7_3:+164302 None:intergenic
TTACATCAAAATTGTCGCAT+AGG 0.547571 7_3:+162217 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 7_3:-164676 Msa1087410:intron
GAGTCTTGTCTATCAACCCT+TGG 0.550697 7_3:+162769 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 7_3:-164290 Msa1087410:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 7_3:-164652 Msa1087410:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 7_3:-164318 Msa1087410:CDS
ATACAGTGCCTGCGCTTAGA+GGG 0.556567 7_3:-164840 Msa1087410:intron
ATTCGGTTTCTACGTAGTCT+GGG 0.563402 7_3:+164788 None:intergenic
GTTCCTTAGCACAAAATCCA+AGG 0.568528 7_3:+162791 None:intergenic
TAATCCTTCCCTCTAAGCGC+AGG 0.569928 7_3:+164832 None:intergenic
AGTGCCTGCGCTTAGAGGGA+AGG 0.581188 7_3:-164836 Msa1087410:CDS
TTTCTCCGTTCAAACGACGT+TGG 0.585440 7_3:+166152 None:intergenic
TCCATTCAGGTAGATTGGGA+TGG 0.591083 7_3:-164330 Msa1087410:intron
AGTTCCAGCAATGACAGCAA+TGG 0.596327 7_3:+166115 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7_3:-166188 Msa1087410:CDS
GCACAAAATCCAAGGCTCGT+TGG 0.605057 7_3:+162799 None:intergenic
GAGAGTGATTATAATAAAGG+TGG 0.627466 7_3:-162926 Msa1087410:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 7_3:+162947 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 7_3:+164248 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 7_3:-164273 Msa1087410:CDS
TCAATAACTACATACAGATG+AGG 0.653463 7_3:-162321 Msa1087410:three_prime_UTR
AAAGAAAGGAGAGACAGTAG+TGG 0.691301 7_3:-164638 Msa1087410:intron
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 7_3:-163446 Msa1087410:CDS
ATAACCAGAAAATACTCACA+AGG 0.721530 7_3:+162479 None:intergenic
ATTCAAAGTAGGATCGCACG+AGG 0.729797 7_3:-164123 Msa1087410:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCTTAAAAAATTTAATA+TGG - chr7_3:165734-165753 Msa1087410:intron 10.0%
!! AAGCTATTATTAATTGAAAT+TGG + chr7_3:163661-163680 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG + chr7_3:164638-164657 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG - chr7_3:164915-164934 Msa1087410:intron 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG - chr7_3:164916-164935 Msa1087410:intron 15.0%
!! AAATTATAAGTGATATAACA+TGG - chr7_3:165036-165055 Msa1087410:intron 15.0%
!! CAGTATAATAAAATAAATTC+AGG + chr7_3:165533-165552 None:intergenic 15.0%
!!! CAACCATATTAAATTTTTTA+AGG + chr7_3:165740-165759 None:intergenic 15.0%
!! AAAAATTTGACAAATCAATT+TGG + chr7_3:166099-166118 None:intergenic 15.0%
!! AATTAGAACACGTATTTATT+TGG + chr7_3:162152-162171 None:intergenic 20.0%
!! GAAATGATAATAGTTAAGTA+TGG + chr7_3:162386-162405 None:intergenic 20.0%
!! TAACTATTATCATTTCTTTC+AGG - chr7_3:162390-162409 Msa1087410:three_prime_UTR 20.0%
!! AATCAACTTAACTTATGTAT+AGG - chr7_3:162841-162860 Msa1087410:intron 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG - chr7_3:162919-162938 Msa1087410:CDS 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG - chr7_3:163177-163196 Msa1087410:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG + chr7_3:163206-163225 None:intergenic 20.0%
!! TATACAATACAACAATATCA+TGG + chr7_3:163341-163360 None:intergenic 20.0%
!! ACGACAAATAATATAATGAA+GGG + chr7_3:163364-163383 None:intergenic 20.0%
!! AACGACAAATAATATAATGA+AGG + chr7_3:163365-163384 None:intergenic 20.0%
!! TACTCGTTCTAATTTAAATA+GGG + chr7_3:163691-163710 None:intergenic 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG + chr7_3:163692-163711 None:intergenic 20.0%
!!! GTATTTGTTTTATCATAAAC+TGG - chr7_3:163861-163880 Msa1087410:intron 20.0%
!! CATTATATTGAAATCTTTGT+AGG + chr7_3:163932-163951 None:intergenic 20.0%
!! TAGTAGTATTAATAAATTGC+AGG - chr7_3:164121-164140 Msa1087410:intron 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG - chr7_3:164216-164235 Msa1087410:intron 20.0%
!!! ATACTGATTCTAAATCAAAT+TGG - chr7_3:164283-164302 Msa1087410:CDS 20.0%
!! TTATAATTTCGTTATAGAAC+AGG + chr7_3:165025-165044 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG - chr7_3:165561-165580 Msa1087410:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG - chr7_3:165562-165581 Msa1087410:intron 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG + chr7_3:165603-165622 None:intergenic 20.0%
!!! AATTTTAATTACGGAAATTC+AGG + chr7_3:165604-165623 None:intergenic 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG - chr7_3:165747-165766 Msa1087410:intron 20.0%
!!! ACAATTTTGATGTAATATTC+CGG - chr7_3:166601-166620 Msa1087410:five_prime_UTR 20.0%
! ATTTCATTAATGTCGAGTTT+GGG + chr7_3:162501-162520 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG + chr7_3:162552-162571 None:intergenic 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG - chr7_3:162601-162620 Msa1087410:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG - chr7_3:162918-162937 Msa1087410:CDS 25.0%
! ACTTATTTGAGCTTATGTAT+TGG - chr7_3:163081-163100 Msa1087410:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG - chr7_3:163176-163195 Msa1087410:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr7_3:163314-163333 Msa1087410:intron 25.0%
! TCCATTATACTAAACAATGT+AGG - chr7_3:163432-163451 Msa1087410:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG + chr7_3:163436-163455 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG + chr7_3:163690-163709 None:intergenic 25.0%
!!! CTTTTTCTTATTTTACTACG+TGG + chr7_3:163906-163925 None:intergenic 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG - chr7_3:164363-164382 Msa1087410:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG - chr7_3:164364-164383 Msa1087410:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG - chr7_3:164642-164661 Msa1087410:CDS 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG - chr7_3:164643-164662 Msa1087410:CDS 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG - chr7_3:164676-164695 Msa1087410:intron 25.0%
! ATATTAATCATTACATGACG+AGG + chr7_3:164720-164739 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG - chr7_3:164738-164757 Msa1087410:intron 25.0%
! AAAGATCCTATTGAAATTGA+AGG + chr7_3:164747-164766 None:intergenic 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG - chr7_3:164752-164771 Msa1087410:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG + chr7_3:164946-164965 None:intergenic 25.0%
! TATATAAAACTGAACCACAA+AGG + chr7_3:164947-164966 None:intergenic 25.0%
! AATTTGAGTGCTTAATATGT+TGG + chr7_3:165250-165269 None:intergenic 25.0%
! AGAAACTGTAATTCAGTAAA+TGG + chr7_3:165472-165491 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG - chr7_3:165486-165505 Msa1087410:intron 25.0%
! ATCAATTCAAACTTTGGATT+TGG - chr7_3:165492-165511 Msa1087410:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG - chr7_3:165493-165512 Msa1087410:intron 25.0%
! AGAGTAAGAATTTATAGAAG+TGG + chr7_3:165556-165575 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG - chr7_3:165563-165582 Msa1087410:intron 25.0%
!!! GCGATTGACAATTTTAATTA+CGG + chr7_3:165613-165632 None:intergenic 25.0%
! TAATTAAAATTGTCAATCGC+TGG - chr7_3:165613-165632 Msa1087410:intron 25.0%
! AATTAAAATTGTCAATCGCT+GGG - chr7_3:165614-165633 Msa1087410:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG - chr7_3:165789-165808 Msa1087410:intron 25.0%
!! CAATGTGAATATGTTTTACA+GGG - chr7_3:165988-166007 Msa1087410:intron 25.0%
! GAATTAATTGTAGACTTATC+TGG + chr7_3:166275-166294 None:intergenic 25.0%
!! ATTTCTTTTGATCACTTTGT+TGG - chr7_3:166551-166570 Msa1087410:exon 25.0%
! ATAAACGAACAATGAAAAAC+CGG + chr7_3:166623-166642 None:intergenic 25.0%
!! TTTTTCATTGTTCGTTTATC+TGG - chr7_3:166624-166643 Msa1087410:five_prime_UTR 25.0%
AATGAAAGAAGAATACTGAC+CGG + chr7_3:162446-162465 None:intergenic 30.0%
CATTTCATTAATGTCGAGTT+TGG + chr7_3:162502-162521 None:intergenic 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG + chr7_3:162614-162633 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG - chr7_3:162613-162632 Msa1087410:intron 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG - chr7_3:162706-162725 Msa1087410:three_prime_UTR 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG - chr7_3:162715-162734 Msa1087410:exon 30.0%
TCAAATAAGCCAAATCAAAG+AGG - chr7_3:163043-163062 Msa1087410:intron 30.0%
AACATCAACAACCGAAAATT+TGG - chr7_3:163528-163547 Msa1087410:intron 30.0%
ACATAGTTCAAATAACCCAA+AGG - chr7_3:163621-163640 Msa1087410:intron 30.0%
ATATTAAGAAGTTCCGAAGA+AGG - chr7_3:163710-163729 Msa1087410:intron 30.0%
AGAGCGCAAAAGAAAAATTT+AGG + chr7_3:164317-164336 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG - chr7_3:164391-164410 Msa1087410:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG + chr7_3:164410-164429 None:intergenic 30.0%
! TTTTCTATAGGTCTTGATGT+CGG - chr7_3:164764-164783 Msa1087410:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG - chr7_3:164844-164863 Msa1087410:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG - chr7_3:165051-165070 Msa1087410:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG - chr7_3:165264-165283 Msa1087410:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG + chr7_3:165463-165482 None:intergenic 30.0%
AAGTAAGGCAAATGTATGTT+TGG - chr7_3:165762-165781 Msa1087410:intron 30.0%
AGTAAGGCAAATGTATGTTT+GGG - chr7_3:165763-165782 Msa1087410:intron 30.0%
CCTTTATTATAATCACTCTC+AGG + chr7_3:165884-165903 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG - chr7_3:165881-165900 Msa1087410:intron 30.0%
GAGAGTGATTATAATAAAGG+TGG - chr7_3:165884-165903 Msa1087410:intron 30.0%
! GCAATGTGAATATGTTTTAC+AGG - chr7_3:165987-166006 Msa1087410:intron 30.0%
! AGAAACTAACCTGAATGTTT+TGG + chr7_3:166144-166163 None:intergenic 30.0%
AAAATACTCACAAGGTATGA+AGG + chr7_3:166326-166345 None:intergenic 30.0%
ATAACCAGAAAATACTCACA+AGG + chr7_3:166334-166353 None:intergenic 30.0%
! TCATGATTTTTCATCACCTA+TGG + chr7_3:166362-166381 None:intergenic 30.0%
TCAATAACTACATACAGATG+AGG - chr7_3:166489-166508 Msa1087410:intron 30.0%
TTACATCAAAATTGTCGCAT+AGG + chr7_3:166596-166615 None:intergenic 30.0%
! AACATTTTGTGTGACATTTG+AGG - chr7_3:166654-166673 Msa1087410:five_prime_UTR 30.0%
!!! AAGGGAGTGTGTTTTAAAGA+TGG + chr7_3:162195-162214 None:intergenic 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG + chr7_3:162213-162232 None:intergenic 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG + chr7_3:162214-162233 None:intergenic 35.0%
CAGTACAGAAGTTACAGTTA+TGG - chr7_3:162253-162272 Msa1087410:three_prime_UTR 35.0%
AGAAAGAGAAGCAATGGAAA+AGG + chr7_3:162291-162310 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG - chr7_3:162310-162329 Msa1087410:three_prime_UTR 35.0%
AGTACCAGAGATTGAGATTT+AGG + chr7_3:162317-162336 None:intergenic 35.0%
TGAATGAGTGTGTGAATTGA+AGG + chr7_3:162360-162379 None:intergenic 35.0%
GTTCTTTCAATCAGTCTTAG+AGG - chr7_3:162999-163018 Msa1087410:intron 35.0%
AAACAAGCTCCTCTTTGATT+TGG + chr7_3:163055-163074 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG - chr7_3:163054-163073 Msa1087410:intron 35.0%
ATAAGCACTTTGCAATGGTT+TGG - chr7_3:163105-163124 Msa1087410:intron 35.0%
AACAATATCATGGTCCTGTT+TGG + chr7_3:163331-163350 None:intergenic 35.0%
! ACACCTCTGTTCCAAATTTT+CGG + chr7_3:163542-163561 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG - chr7_3:163562-163581 Msa1087410:intron 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG - chr7_3:163597-163616 Msa1087410:intron 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG - chr7_3:163598-163617 Msa1087410:intron 35.0%
TATTTGAACTATGTCCCATG+AGG + chr7_3:163615-163634 None:intergenic 35.0%
AGTTCAAATAACCCAAAGGA+AGG - chr7_3:163625-163644 Msa1087410:intron 35.0%
!! GTCATTTTACACCTTCCTTT+GGG + chr7_3:163639-163658 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG + chr7_3:164166-164185 None:intergenic 35.0%
ATCTACATAGCAGACATTCT+AGG - chr7_3:164340-164359 Msa1087410:intron 35.0%
GATTTGACAACTTTACTCCT+AGG - chr7_3:164390-164409 Msa1087410:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG - chr7_3:164476-164495 Msa1087410:intron 35.0%
TATGCGACCATAATAACCTA+TGG + chr7_3:164511-164530 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG + chr7_3:164542-164561 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG + chr7_3:164565-164584 None:intergenic 35.0%
AAATATGCAGGGTGATGATA+AGG - chr7_3:164654-164673 Msa1087410:CDS 35.0%
CTACTGCATTCAACATTACT+TGG + chr7_3:164845-164864 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG - chr7_3:164843-164862 Msa1087410:intron 35.0%
GAATAAGGATAAGTCCTACT+TGG - chr7_3:164869-164888 Msa1087410:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG - chr7_3:164879-164898 Msa1087410:intron 35.0%
GAATCCTAGTATAACCAAGT+AGG + chr7_3:164886-164905 None:intergenic 35.0%
! TATTAAGCATGTGCTACTGT+TGG - chr7_3:164970-164989 Msa1087410:intron 35.0%
AGTTTAGTCCTAATCCCAAA+GGG + chr7_3:165095-165114 None:intergenic 35.0%
ATGCAGACTCCAGAAAATAA+GGG + chr7_3:165276-165295 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG - chr7_3:165318-165337 Msa1087410:intron 35.0%
ATATAGCTAACTTCACCTAG+CGG + chr7_3:165694-165713 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG - chr7_3:165831-165850 Msa1087410:intron 35.0%
ATAATTGTACCACCAGAACT+TGG - chr7_3:165854-165873 Msa1087410:intron 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG - chr7_3:166025-166044 Msa1087410:intron 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG + chr7_3:166128-166147 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG + chr7_3:166129-166148 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG - chr7_3:166132-166151 Msa1087410:CDS 35.0%
!! AACTAACCTGAATGTTTTGG+TGG + chr7_3:166141-166160 None:intergenic 35.0%
!!! GTTTTTTTCCATCAGTTCAC+TGG + chr7_3:166242-166261 None:intergenic 35.0%
AGACTTATCTGGCAATACAA+AGG + chr7_3:166264-166283 None:intergenic 35.0%
GAAGGATCAATCAATGATAC+TGG + chr7_3:166308-166327 None:intergenic 35.0%
! CATACCTTGTGAGTATTTTC+TGG - chr7_3:166327-166346 Msa1087410:intron 35.0%
!! TTTCTGGTTATGTTCTCCAT+AGG - chr7_3:166343-166362 Msa1087410:intron 35.0%
GTACTTTGTGTTGTGTGGAA+TGG + chr7_3:162234-162253 None:intergenic 40.0%
GTACTGTACTTTGTGTTGTG+TGG + chr7_3:162239-162258 None:intergenic 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG + chr7_3:162297-162316 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG + chr7_3:162418-162437 None:intergenic 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG - chr7_3:162653-162672 Msa1087410:intron 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG - chr7_3:162709-162728 Msa1087410:exon 40.0%
TTGGCATAAGCACTTTGCAA+TGG - chr7_3:163100-163119 Msa1087410:intron 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG - chr7_3:163117-163136 Msa1087410:intron 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG - chr7_3:163472-163491 Msa1087410:CDS 40.0%
AGAGTGAAGCTGGACAATAA+TGG - chr7_3:163482-163501 Msa1087410:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG - chr7_3:163536-163555 Msa1087410:intron 40.0%
AGGTGTAACGTATGTCTATG+AGG - chr7_3:163556-163575 Msa1087410:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG + chr7_3:163640-163659 None:intergenic 40.0%
! CCTTGTTTGTGTGTCTGAAA+CGG - chr7_3:163752-163771 Msa1087410:intron 40.0%
! TTTGTGTGTCTGAAACGGAA+AGG - chr7_3:163757-163776 Msa1087410:intron 40.0%
! CGTTACTGATGGTGAAAAGT+AGG - chr7_3:163829-163848 Msa1087410:intron 40.0%
ATTCGGTTTCTACGTAGTCT+GGG + chr7_3:164025-164044 None:intergenic 40.0%
CTTATACTGGAGTCCAGATT+CGG + chr7_3:164042-164061 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG - chr7_3:164158-164177 Msa1087410:intron 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG + chr7_3:164167-164186 None:intergenic 40.0%
ACTACTGTCTCTCCTTTCTT+TGG + chr7_3:164173-164192 None:intergenic 40.0%
AAAGAAAGGAGAGACAGTAG+TGG - chr7_3:164172-164191 Msa1087410:intron 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG - chr7_3:164467-164486 Msa1087410:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG - chr7_3:164475-164494 Msa1087410:intron 40.0%
GGCTACACCATAGGTTATTA+TGG - chr7_3:164501-164520 Msa1087410:intron 40.0%
GAAGCCCGGAATAAAACAAA+AGG - chr7_3:164534-164553 Msa1087410:intron 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG + chr7_3:164541-164560 None:intergenic 40.0%
CTATCTAGACATTGTCGAAG+TGG - chr7_3:164598-164617 Msa1087410:intron 40.0%
GAATGCAGTAGGGTTGAATA+AGG - chr7_3:164854-164873 Msa1087410:intron 40.0%
TCGACATCCTTCGTTAGTAT+TGG - chr7_3:164993-165012 Msa1087410:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG - chr7_3:164997-165016 Msa1087410:intron 40.0%
GAGTTTAGTCCTAATCCCAA+AGG + chr7_3:165096-165115 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG + chr7_3:165277-165296 None:intergenic 40.0%
!! GGTAATACCTGCTTTTGAAG+AGG - chr7_3:165339-165358 Msa1087410:intron 40.0%
GTAAATGGCATGAAAGGACT+TGG + chr7_3:165457-165476 None:intergenic 40.0%
! TATGAAACCCTTTTTCCGCT+AGG - chr7_3:165676-165695 Msa1087410:intron 40.0%
AACTTCACCTAGCGGAAAAA+GGG + chr7_3:165686-165705 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG + chr7_3:165687-165706 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG - chr7_3:165693-165712 Msa1087410:intron 40.0%
ACTCTTACCGAGAATGTTGT+AGG + chr7_3:165917-165936 None:intergenic 40.0%
!! AGTTGATGAACACTAGTGAC+AGG + chr7_3:165945-165964 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG + chr7_3:166022-166041 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG - chr7_3:166024-166043 Msa1087410:intron 40.0%
ATCAAAATTGTCGCATAGGC+AGG + chr7_3:166592-166611 None:intergenic 40.0%
CTCTCCGATTCTTCTTTCTC+CGG - chr7_3:162424-162443 Msa1087410:three_prime_UTR 45.0%
CTGACCGGAGAAAGAAGAAT+CGG + chr7_3:162431-162450 None:intergenic 45.0%
GGTAAAAGCAACGGTAAGAG+TGG - chr7_3:162622-162641 Msa1087410:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG + chr7_3:162661-162680 None:intergenic 45.0%
GTCGTTTGAACGGAGAAAGA+TGG - chr7_3:162663-162682 Msa1087410:intron 45.0%
TCTTCCATTGCTGTCATTGC+TGG - chr7_3:162691-162710 Msa1087410:three_prime_UTR 45.0%
AGTTCCAGCAATGACAGCAA+TGG + chr7_3:162698-162717 None:intergenic 45.0%
AGAAGTTCCGAAGAAGGTCA+TGG - chr7_3:163716-163735 Msa1087410:intron 45.0%
AAACCGACCATGACCTTCTT+CGG + chr7_3:163726-163745 None:intergenic 45.0%
CCGTTTCAGACACACAAACA+AGG + chr7_3:163755-163774 None:intergenic 45.0%
TGAAACGGAAAGGAGGAGAA+TGG - chr7_3:163767-163786 Msa1087410:intron 45.0%
! TGCAGTTGTGTCGTTACTGA+TGG - chr7_3:163818-163837 Msa1087410:intron 45.0%
! GATTCGGTTTCTACGTAGTC+TGG + chr7_3:164026-164045 None:intergenic 45.0%
GACTACGTAGAAACCGAATC+TGG - chr7_3:164026-164045 Msa1087410:intron 45.0%
CGAATCTGGACTCCAGTATA+AGG - chr7_3:164040-164059 Msa1087410:intron 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG + chr7_3:164155-164174 None:intergenic 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG + chr7_3:164156-164175 None:intergenic 45.0%
TCCATTCAGGTAGATTGGGA+TGG - chr7_3:164480-164499 Msa1087410:intron 45.0%
! ATGGTCGCATATTTGAAGCC+CGG - chr7_3:164520-164539 Msa1087410:intron 45.0%
GCCCGGAATAAAACAAAAGG+CGG - chr7_3:164537-164556 Msa1087410:intron 45.0%
ATTCAAAGTAGGATCGCACG+AGG - chr7_3:164687-164706 Msa1087410:intron 45.0%
TCTAGAGGGAAAACCCTTTG+TGG - chr7_3:164930-164949 Msa1087410:intron 45.0%
GAGCCAACCAATACTAACGA+AGG + chr7_3:165003-165022 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+GGG + chr7_3:165145-165164 None:intergenic 45.0%
! TTGCCACAAGGTGTTATCGT+GGG - chr7_3:165145-165164 Msa1087410:intron 45.0%
AAACCCACGATAACACCTTG+TGG + chr7_3:165151-165170 None:intergenic 45.0%
! TCAGGATATCCAAGTTCTGG+TGG + chr7_3:165866-165885 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG + chr7_3:165869-165888 None:intergenic 45.0%
CCGAGAATGTTGTAGGTCTT+GGG + chr7_3:165910-165929 None:intergenic 45.0%
CCCAAGACCTACAACATTCT+CGG - chr7_3:165907-165926 Msa1087410:intron 45.0%
ACCGAGAATGTTGTAGGTCT+TGG + chr7_3:165911-165930 None:intergenic 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG - chr7_3:166016-166035 Msa1087410:intron 45.0%
! GAGTCTTGTCTATCAACCCT+TGG + chr7_3:166044-166063 None:intergenic 45.0%
GTCTTGCTCTGACATGGATT+CGG + chr7_3:166217-166236 None:intergenic 45.0%
CAAGACTACCAGTGAACTGA+TGG - chr7_3:166231-166250 Msa1087410:intron 45.0%
GTTCCGAAGAAGGTCATGGT+CGG - chr7_3:163720-163739 Msa1087410:intron 50.0%
! GTGTGTCTGAAACGGAAAGG+AGG - chr7_3:163760-163779 Msa1087410:intron 50.0%
ATACAGTGCCTGCGCTTAGA+GGG - chr7_3:163970-163989 Msa1087410:intron 50.0%
TAATCCTTCCCTCTAAGCGC+AGG + chr7_3:163981-164000 None:intergenic 50.0%
GCGCTTAGAGGGAAGGATTA+TGG - chr7_3:163981-164000 Msa1087410:intron 50.0%
CGTGCTGCATCACCTTATAC+TGG + chr7_3:164055-164074 None:intergenic 50.0%
AAATTGCAGGACTTGCGACC+CGG - chr7_3:164134-164153 Msa1087410:CDS 50.0%
GCCATCCCAATCTACCTGAA+TGG + chr7_3:164484-164503 None:intergenic 50.0%
GATTGGGATGGCTACACCAT+AGG - chr7_3:164492-164511 Msa1087410:intron 50.0%
AACAAAAGGCGGTTCCTTCG+AGG - chr7_3:164548-164567 Msa1087410:intron 50.0%
TGAAGAGTCTGAACGCCCTT+TGG - chr7_3:165077-165096 Msa1087410:intron 50.0%
GAAGAGTCTGAACGCCCTTT+GGG - chr7_3:165078-165097 Msa1087410:intron 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG - chr7_3:165084-165103 Msa1087410:intron 50.0%
TCGACTTTACCCTTGCCACA+AGG - chr7_3:165133-165152 Msa1087410:intron 50.0%
CACGATAACACCTTGTGGCA+AGG + chr7_3:165146-165165 None:intergenic 50.0%
! CTTGCCACAAGGTGTTATCG+TGG - chr7_3:165144-165163 Msa1087410:intron 50.0%
GCAACAGCCTCTTCAAAAGC+AGG + chr7_3:165349-165368 None:intergenic 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG - chr7_3:165349-165368 Msa1087410:intron 50.0%
ACTTGGACGTAACACAGCTC+AGG + chr7_3:165440-165459 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG + chr7_3:166014-166033 None:intergenic 50.0%
! CTGGTAGTCTTGCTCTGACA+TGG + chr7_3:166223-166242 None:intergenic 50.0%
CATACAGTGCCTGCGCTTAG+AGG - chr7_3:163969-163988 Msa1087410:intron 55.0%
GCTGTTGCAGGCATGTCTCT+CGG - chr7_3:165361-165380 Msa1087410:intron 55.0%
CTGTTGCAGGCATGTCTCTC+GGG - chr7_3:165362-165381 Msa1087410:intron 55.0%
TGTTGCAGGCATGTCTCTCG+GGG - chr7_3:165363-165382 Msa1087410:intron 55.0%
TTTACAGGGCCAACGAGCCT+TGG - chr7_3:166002-166021 Msa1087410:intron 55.0%
AGTGCCTGCGCTTAGAGGGA+AGG - chr7_3:163974-163993 Msa1087410:intron 60.0%
CAGGACTTGCGACCCGGAAA+TGG - chr7_3:164140-164159 Msa1087410:CDS 60.0%
GTTGCAGGCATGTCTCTCGG+GGG - chr7_3:165364-165383 Msa1087410:intron 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG - chr7_3:165374-165393 Msa1087410:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 162148 166684 162148 ID=Msa1087410;Name=Msa1087410
chr7_3 mRNA 162148 166684 162148 ID=Msa1087410-mRNA-1;Parent=Msa1087410;Name=Msa1087410-mRNA-1;_AED=0.32;_eAED=0.32;_QI=124|1|1|1|0.9|0.81|11|458|240
chr7_3 exon 162148 162556 162148 ID=Msa1087410-mRNA-1:exon:78;Parent=Msa1087410-mRNA-1
chr7_3 exon 162679 162823 162679 ID=Msa1087410-mRNA-1:exon:77;Parent=Msa1087410-mRNA-1
chr7_3 exon 162904 162979 162904 ID=Msa1087410-mRNA-1:exon:76;Parent=Msa1087410-mRNA-1
chr7_3 exon 163437 163492 163437 ID=Msa1087410-mRNA-1:exon:75;Parent=Msa1087410-mRNA-1
chr7_3 exon 164124 164168 164124 ID=Msa1087410-mRNA-1:exon:74;Parent=Msa1087410-mRNA-1
chr7_3 exon 164263 164343 164263 ID=Msa1087410-mRNA-1:exon:73;Parent=Msa1087410-mRNA-1
chr7_3 exon 164639 164689 164639 ID=Msa1087410-mRNA-1:exon:72;Parent=Msa1087410-mRNA-1
chr7_3 exon 164771 164856 164771 ID=Msa1087410-mRNA-1:exon:71;Parent=Msa1087410-mRNA-1
chr7_3 exon 166072 166209 166072 ID=Msa1087410-mRNA-1:exon:70;Parent=Msa1087410-mRNA-1
chr7_3 exon 166387 166420 166387 ID=Msa1087410-mRNA-1:exon:69;Parent=Msa1087410-mRNA-1
chr7_3 exon 166501 166684 166501 ID=Msa1087410-mRNA-1:exon:68;Parent=Msa1087410-mRNA-1
chr7_3 five_prime_UTR 166561 166684 166561 ID=Msa1087410-mRNA-1:five_prime_utr;Parent=Msa1087410-mRNA-1
chr7_3 CDS 166501 166560 166501 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 166387 166420 166387 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 166072 166209 166072 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 164771 164856 164771 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 164639 164689 164639 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 164263 164343 164263 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 164124 164168 164124 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 163437 163492 163437 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 162904 162979 162904 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 CDS 162728 162823 162728 ID=Msa1087410-mRNA-1:cds;Parent=Msa1087410-mRNA-1
chr7_3 three_prime_UTR 162679 162727 162679 ID=Msa1087410-mRNA-1:three_prime_utr;Parent=Msa1087410-mRNA-1
chr7_3 three_prime_UTR 162148 162556 162148 ID=Msa1087410-mRNA-1:three_prime_utr;Parent=Msa1087410-mRNA-1
Gene Sequence

>Msa1087410

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTAGAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACGTAGAAACCGAATCTGGACTCCAGTATAAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGATAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCTGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATTGA

Protein sequence

>Msa1087410

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADMPALRGKDYGKSKMKYPDYVETESGLQYKDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPN*