AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1442070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442070 MtrunA17_Chr1g0207341 96.774 372 12 0 1 372 1 372 0.0 754
Msa1442070 MtrunA17_Chr7g0272191 41.573 178 101 2 162 337 117 293 8.64e-42 149
Msa1442070 MtrunA17_Chr4g0055551 41.919 198 112 3 144 341 94 288 1.16e-40 145
Msa1442070 MtrunA17_Chr5g0409311 33.690 187 114 2 150 336 83 259 2.36e-28 112
Msa1442070 MtrunA17_Chr7g0251451 32.447 188 117 2 149 336 73 250 2.19e-26 107
Msa1442070 MtrunA17_Chr4g0038261 30.220 182 117 2 155 336 45 216 1.45e-22 95.1
Msa1442070 MtrunA17_Chr4g0056771 31.868 182 114 2 155 336 95 266 1.50e-21 93.6
Msa1442070 MtrunA17_Chr7g0270061 32.402 179 111 2 158 336 111 279 1.55e-20 90.9
Msa1442070 MtrunA17_Chr1g0194601 31.844 179 112 2 158 336 114 282 6.41e-19 86.3
Msa1442070 MtrunA17_Chr4g0034751 28.415 183 119 4 155 336 99 270 1.37e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442070 AT1G49970.1 64.171 374 122 6 8 373 17 386 2.67e-167 473
Msa1442070 AT1G09130.2 45.833 192 101 2 148 337 114 304 2.95e-55 184
Msa1442070 AT1G09130.1 45.833 192 101 2 148 337 114 304 2.95e-55 184
Msa1442070 AT1G09130.3 45.833 192 101 2 148 337 114 304 8.94e-55 184
Msa1442070 AT4G17040.1 42.857 189 106 2 153 341 103 289 5.81e-50 170
Msa1442070 AT5G45390.1 34.112 214 118 4 150 353 74 274 1.68e-30 118
Msa1442070 AT5G23140.1 30.220 182 117 2 155 336 48 219 8.60e-24 99.0
Msa1442070 AT1G12410.1 31.868 182 114 2 155 336 89 260 1.27e-22 96.7
Msa1442070 AT1G66670.1 30.769 182 116 2 155 336 85 256 1.74e-22 97.1
Msa1442070 AT1G02560.1 32.961 179 110 2 158 336 117 285 2.44e-20 90.5
Msa1442070 AT1G11750.1 27.957 186 124 2 151 336 92 267 4.37e-19 86.7
Msa1442070 AT1G11750.2 27.957 186 124 2 151 336 110 285 1.31e-18 85.5
Msa1442070 ATCG00670.1 22.396 192 140 1 144 335 11 193 7.94e-12 64.3

Find 150 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGATCTGTGGACTTT+TGG 0.150819 tig0029620:+1588 None:intergenic
CCTTTAAAGGTTGGTGGTTT+TGG 0.168683 tig0029620:-1038 Msa1442070:three_prime_UTR
TTCATCTGCCAAAAGTTATT+TGG 0.171304 tig0029620:-3029 Msa1442070:CDS
CCAAAACCACCAACCTTTAA+AGG 0.194849 tig0029620:+1038 None:intergenic
TATGTATCCAATGCCTTTAA+AGG 0.204958 tig0029620:-1051 Msa1442070:three_prime_UTR
TCATTATTCTTATTACATAT+TGG 0.223891 tig0029620:-727 Msa1442070:three_prime_UTR
CATTATTCTTATTACATATT+GGG 0.255697 tig0029620:-726 Msa1442070:three_prime_UTR
CTTCTTTGCTCTTGGATTCT+CGG 0.258979 tig0029620:-2880 Msa1442070:CDS
AACCCTCAAGCGGCTCCTTC+AGG 0.297867 tig0029620:-1118 Msa1442070:CDS
TGATGTCTACACTGTGAATT+TGG 0.305379 tig0029620:-2280 Msa1442070:CDS
CTGCTTGACCTTCCTATATT+AGG 0.308668 tig0029620:+1003 None:intergenic
TATTTATATATTAATTCGTC+TGG 0.315416 tig0029620:-2636 Msa1442070:CDS
GGATTTGCCTTCTTTGCTCT+TGG 0.316410 tig0029620:-2888 Msa1442070:CDS
TGTTGCAGATATGTGGATTA+AGG 0.318648 tig0029620:-1562 Msa1442070:intron
CTGTATCTGTACATTGGCTC+TGG 0.323741 tig0029620:-920 Msa1442070:three_prime_UTR
TACAGACTCTAAACATTAAC+TGG 0.341309 tig0029620:+938 None:intergenic
AGCGGCTCCTTCAGGACTTT+AGG 0.348211 tig0029620:-1110 Msa1442070:exon
AAACATTTGAAATAAGAATA+AGG 0.352443 tig0029620:+655 None:intergenic
GTGAATTTGGCCATGGCGTT+TGG 0.365449 tig0029620:-2267 Msa1442070:CDS
GAGCTGTTGGCAAAAGGAAC+AGG 0.366364 tig0029620:-1402 Msa1442070:CDS
ACTATGAGCCAAATAACTTT+TGG 0.372169 tig0029620:+3021 None:intergenic
TATAAATAAACAGGTTTGGC+AGG 0.373031 tig0029620:+2651 None:intergenic
AAATCCGGTGGAGCATTTCT+AGG 0.377469 tig0029620:+2905 None:intergenic
TACAGAGGAGGTAGGGGAAC+AGG 0.379885 tig0029620:-2932 Msa1442070:CDS
CTTATTTCAAATGTTTATGC+TGG 0.383546 tig0029620:-648 Msa1442070:three_prime_UTR
GTCAGCGAGTCCGTATTCTA+TGG 0.389727 tig0029620:+1317 None:intergenic
ACATCACACCCTAGCCAGTT+TGG 0.389943 tig0029620:-5095 Msa1442070:five_prime_UTR
ACTGCTTGGGGATGCGGTCG+AGG 0.392918 tig0029620:+4921 None:intergenic
GTCCTGAAGGAGCCGCTTGA+GGG 0.407697 tig0029620:+1116 None:intergenic
AATATATAAATAAACAGGTT+TGG 0.409111 tig0029620:+2647 None:intergenic
GCGGATATAATCTTCTAATA+CGG 0.413071 tig0029620:+677 None:intergenic
GATTCTCGGATATGTTATCT+TGG 0.415479 tig0029620:-2866 Msa1442070:CDS
TCTGGCTCAACTTATGTGGT+TGG 0.418871 tig0029620:-2685 Msa1442070:CDS
GTCTGAACTGCTTGGGGATG+CGG 0.420074 tig0029620:+4915 None:intergenic
TGAGTATTACATTGAGCTGT+TGG 0.425511 tig0029620:-1415 Msa1442070:CDS
TAGAGAAAATGACTAGGCCT+TGG 0.426980 tig0029620:-844 Msa1442070:three_prime_UTR
TATTAATTCGTCTGGGACTC+AGG 0.429397 tig0029620:-2628 Msa1442070:intron
GAGTGTAAGAAGATAATAAC+TGG 0.433563 tig0029620:-5123 Msa1442070:five_prime_UTR
CCACCAACCTTTAAAGGCAT+TGG 0.437132 tig0029620:+1044 None:intergenic
AGAAGACATTGCAACCAAAC+TGG 0.441512 tig0029620:+5081 None:intergenic
TCGCGGTTTGCGTGTGGCAG+TGG 0.446692 tig0029620:+4973 None:intergenic
AGAGAAAATGACTAGGCCTT+GGG 0.448844 tig0029620:-843 Msa1442070:three_prime_UTR
TACATTGAGCTGTTGGCAAA+AGG 0.452233 tig0029620:-1408 Msa1442070:CDS
TAGTATGTACAGAGGAGGTA+GGG 0.452744 tig0029620:-2939 Msa1442070:CDS
TGCTCTTAATCCCTCGCAAA+TGG 0.452863 tig0029620:-3707 Msa1442070:CDS
TGAATGGTAATATTTCCATT+TGG 0.454703 tig0029620:+961 None:intergenic
CGGATATAATCTTCTAATAC+GGG 0.455685 tig0029620:+678 None:intergenic
AGAGCACTGCGGAGAGGTGG+TGG 0.456289 tig0029620:-1142 Msa1442070:CDS
ATTCATCATCACATTGATAA+CGG 0.457880 tig0029620:+791 None:intergenic
GTGGCAGTGGCGTGAGGAAA+AGG 0.459513 tig0029620:+4986 None:intergenic
GAATTAATATATAAATAAAC+AGG 0.462866 tig0029620:+2642 None:intergenic
AAGAGCAAAGAAGGCAAATC+CGG 0.464258 tig0029620:+2890 None:intergenic
AAAATAATGTATTCAATGGA+TGG 0.467679 tig0029620:-1294 Msa1442070:CDS
AAAAGTTATTTGGCTCATAG+TGG 0.470154 tig0029620:-3019 Msa1442070:CDS
CGAGAATCCAAGAGCAAAGA+AGG 0.470196 tig0029620:+2881 None:intergenic
TTAGTATGTACAGAGGAGGT+AGG 0.470751 tig0029620:-2940 Msa1442070:CDS
TGTATCTGTACATTGGCTCT+GGG 0.472404 tig0029620:-919 Msa1442070:three_prime_UTR
CCAATGCCTTTAAAGGTTGG+TGG 0.476124 tig0029620:-1044 Msa1442070:three_prime_UTR
TTATTCTGGCTCAACTTATG+TGG 0.478590 tig0029620:-2689 Msa1442070:CDS
AGCCGTGACAGAACTTATTC+TGG 0.484856 tig0029620:-2703 Msa1442070:CDS
CGGGGAACAAGGTGTGCATT+AGG 0.486233 tig0029620:+697 None:intergenic
TTCAAGTCGACGCCTAATAT+AGG 0.489117 tig0029620:-1015 Msa1442070:three_prime_UTR
CTCTCAGACATCTGATGCAC+AGG 0.490559 tig0029620:+3661 None:intergenic
TGACAAAATAATGTATTCAA+TGG 0.491221 tig0029620:-1298 Msa1442070:CDS
GCAGAGATCTTCACATATCA+AGG 0.491667 tig0029620:-984 Msa1442070:three_prime_UTR
CTTCACATATCAAGGCCAAA+TGG 0.492075 tig0029620:-976 Msa1442070:three_prime_UTR
TTATTTCAAATGTTTATGCT+GGG 0.496512 tig0029620:-647 Msa1442070:three_prime_UTR
AAATAATGTATTCAATGGAT+GGG 0.501932 tig0029620:-1293 Msa1442070:CDS
TTTCCTGTCTGAACTGCTTG+GGG 0.509693 tig0029620:+4909 None:intergenic
AGACAGGAAAATCTCAAAGA+TGG 0.509874 tig0029620:-4896 Msa1442070:CDS
GTGGTTCTGTTGCAGATATG+TGG 0.509883 tig0029620:-1569 Msa1442070:CDS
TCTAAACATTAACTGGTGAA+TGG 0.514534 tig0029620:+945 None:intergenic
GTTGGAAATATCTAGTCCTC+TGG 0.517296 tig0029620:+1349 None:intergenic
CTGCTTGGGGATGCGGTCGA+GGG 0.519626 tig0029620:+4922 None:intergenic
GCAGCAATGATTCTGTCTGT+TGG 0.520589 tig0029620:-2240 Msa1442070:CDS
TAGAGTCTGTATCTGTACAT+TGG 0.525719 tig0029620:-926 Msa1442070:three_prime_UTR
CCACAGGATGCCATAGAATA+CGG 0.527539 tig0029620:-1327 Msa1442070:CDS
AGTCCTGAAGGAGCCGCTTG+AGG 0.528742 tig0029620:+1115 None:intergenic
CTCTAGTTGAAACAAAGCAC+AGG 0.530531 tig0029620:+862 None:intergenic
ATTCTATGGCATCCTGTGGT+TGG 0.530734 tig0029620:+1331 None:intergenic
TGCTGCTTGGCCAAACGCCA+TGG 0.533193 tig0029620:+2257 None:intergenic
TATCCAATGCCTTTAAAGGT+TGG 0.535738 tig0029620:-1047 Msa1442070:three_prime_UTR
GGGAAAGTGCATATGAGAAG+CGG 0.538447 tig0029620:-1272 Msa1442070:CDS
ATTTATATATTAATTCGTCT+GGG 0.544932 tig0029620:-2635 Msa1442070:CDS
CATTGCAACCAAACTGGCTA+GGG 0.546758 tig0029620:+5087 None:intergenic
ATGCATACAGGCAAAAGAGC+TGG 0.551754 tig0029620:-1448 Msa1442070:intron
TATTCTTATTACATATTGGG+TGG 0.552781 tig0029620:-723 Msa1442070:three_prime_UTR
CATCCCCAAGCAGTTCAGAC+AGG 0.554637 tig0029620:-4912 Msa1442070:CDS
GTGATGATGAATGAACTTCA+TGG 0.555343 tig0029620:-780 Msa1442070:three_prime_UTR
GATATGTTATCTTGGTATGC+CGG 0.559052 tig0029620:-2858 Msa1442070:intron
AGTATGTACAGAGGAGGTAG+GGG 0.560039 tig0029620:-2938 Msa1442070:CDS
TACAGAAATCATATCAGCGA+TGG 0.561888 tig0029620:+2466 None:intergenic
ACATTGCAACCAAACTGGCT+AGG 0.565654 tig0029620:+5086 None:intergenic
GTTGAAGAATCGTGGATGAA+TGG 0.565697 tig0029620:+5034 None:intergenic
TATGAACATGTCCATTTGCG+AGG 0.567121 tig0029620:+3696 None:intergenic
AAGGAAGAAGCTTAGTTCCA+TGG 0.571228 tig0029620:+5005 None:intergenic
ATCTTCTAATACGGGGAACA+AGG 0.571440 tig0029620:+686 None:intergenic
GAAGCATCGCGGTTTGCGTG+TGG 0.571479 tig0029620:+4967 None:intergenic
AGAATAAGTTCTGTCACGGC+TGG 0.572475 tig0029620:+2705 None:intergenic
CAACAGAACCACTTGATCTG+TGG 0.572805 tig0029620:+1580 None:intergenic
CCAAAAGTCCACAGATCAAG+TGG 0.574282 tig0029620:-1588 Msa1442070:CDS
AATAATGTATTCAATGGATG+GGG 0.574540 tig0029620:-1292 Msa1442070:CDS
AAAGTTATTTGGCTCATAGT+GGG 0.574872 tig0029620:-3018 Msa1442070:CDS
GGAAAGTGCATATGAGAAGC+GGG 0.576650 tig0029620:-1271 Msa1442070:intron
GAAATTACCTAAAGTCCTGA+AGG 0.577509 tig0029620:+1103 None:intergenic
TTGCGTGTGGCAGTGGCGTG+AGG 0.577740 tig0029620:+4980 None:intergenic
GAGGGAGCAGTTAAAAGAAA+AGG 0.578090 tig0029620:+4940 None:intergenic
ATAAATAAACAGGTTTGGCA+GGG 0.579322 tig0029620:+2652 None:intergenic
AGCATCAGTTTCTGATCCCA+CGG 0.581104 tig0029620:+2493 None:intergenic
TATCTGTACATTGGCTCTGG+GGG 0.582079 tig0029620:-917 Msa1442070:three_prime_UTR
CAGACAGAATCATTGCTGCT+TGG 0.583497 tig0029620:+2244 None:intergenic
CAAAGAGCACTGCGGAGAGG+TGG 0.584526 tig0029620:-1145 Msa1442070:CDS
TAATAAGAATAATGAAACAA+AGG 0.585811 tig0029620:+735 None:intergenic
GTATCTGTACATTGGCTCTG+GGG 0.587270 tig0029620:-918 Msa1442070:three_prime_UTR
ATGAACATGTCCATTTGCGA+GGG 0.596674 tig0029620:+3697 None:intergenic
GATTCTTCAACTACTCGCCA+TGG 0.599171 tig0029620:-5022 Msa1442070:CDS
GGCGAGTAGTTGAAGAATCG+TGG 0.602735 tig0029620:+5026 None:intergenic
GATGAGTAGTGTATCTAGCA+TGG 0.604215 tig0029620:-2996 Msa1442070:CDS
GACTAGATATTTCCAACCAC+AGG 0.605387 tig0029620:-1343 Msa1442070:CDS
AGCCAGAATAAGTTCTGTCA+CGG 0.605778 tig0029620:+2701 None:intergenic
GAGCACTGCGGAGAGGTGGT+GGG 0.606710 tig0029620:-1141 Msa1442070:CDS
AAGGCCTAGAAATGCTCCAC+CGG 0.607493 tig0029620:-2909 Msa1442070:CDS
GAGGAGGTAGGGGAACAGGA+AGG 0.626447 tig0029620:-2928 Msa1442070:CDS
GAGAAAATGACTAGGCCTTG+GGG 0.626649 tig0029620:-842 Msa1442070:three_prime_UTR
AGCAAAGAAGGCAAATCCGG+TGG 0.627505 tig0029620:+2893 None:intergenic
CTACACTGTGAATTTGGCCA+TGG 0.627831 tig0029620:-2274 Msa1442070:CDS
GATGTCTGAGAGAGTTACAG+AGG 0.628825 tig0029620:-3650 Msa1442070:intron
AAAAGGAACAGGGAAGTCAA+AGG 0.631649 tig0029620:-1391 Msa1442070:CDS
AGGTGGTGGGAACCCTCAAG+CGG 0.634420 tig0029620:-1128 Msa1442070:CDS
GAATGAGAAGAATGAGACCG+TGG 0.634632 tig0029620:-2510 Msa1442070:CDS
AGCTGTTGGCAAAAGGAACA+GGG 0.636658 tig0029620:-1401 Msa1442070:CDS
CCGTATTCTATGGCATCCTG+TGG 0.639047 tig0029620:+1327 None:intergenic
AGTGTTAGTATGTACAGAGG+AGG 0.639107 tig0029620:-2944 Msa1442070:CDS
TGTAAGAAGATAATAACTGG+TGG 0.651940 tig0029620:-5120 Msa1442070:five_prime_UTR
AGTCGACGCCTAATATAGGA+AGG 0.652293 tig0029620:-1011 Msa1442070:three_prime_UTR
ACTTCAGAAAATAATCCCCA+AGG 0.654329 tig0029620:+827 None:intergenic
AATGAGAAGAATGAGACCGT+GGG 0.661371 tig0029620:-2509 Msa1442070:CDS
CATACAGGCAAAAGAGCTGG+AGG 0.663306 tig0029620:-1445 Msa1442070:intron
ATGAGTGTTAGTATGTACAG+AGG 0.665010 tig0029620:-2947 Msa1442070:CDS
GGATACTTACTGGATGAATG+TGG 0.665949 tig0029620:+2192 None:intergenic
GCTCAAAGAGCACTGCGGAG+AGG 0.670869 tig0029620:-1148 Msa1442070:CDS
ATGAATGTGGCAGTACAGCA+CGG 0.671866 tig0029620:+2205 None:intergenic
AAATTGCTAAAGACGTCCAG+AGG 0.678617 tig0029620:-1365 Msa1442070:CDS
GAAAAGGACTTGAAGCATCG+CGG 0.687598 tig0029620:+4956 None:intergenic
TTCAACTAGAGAAAATGACT+AGG 0.702147 tig0029620:-850 Msa1442070:three_prime_UTR
ATGAATGGTGAAGAGAGTGA+TGG 0.712432 tig0029620:+5049 None:intergenic
TTAAGAGCATATAGAAACTG+CGG 0.716493 tig0029620:+3721 None:intergenic
GGATATAATCTTCTAATACG+GGG 0.716529 tig0029620:+679 None:intergenic
CATTTGAAATAAGAATAAGG+CGG 0.762753 tig0029620:+658 None:intergenic
TACGTGCTCAAAGAGCACTG+CGG 0.848626 tig0029620:-1153 Msa1442070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATATATTTATCATTT+GGG + tig0029620:1932-1951 None:intergenic 10.0%
!! GAATTAATATATAAATAAAC+AGG + tig0029620:3144-3163 None:intergenic 10.0%
!!! TTCTATTTATTGATTATATT+TGG - tig0029620:4309-4328 Msa1442070:intron 10.0%
!!! TCTATTTATTGATTATATTT+GGG - tig0029620:4310-4329 Msa1442070:intron 10.0%
!! TAAATTAGAATTAGAGAAAA+TGG + tig0029620:944-963 None:intergenic 15.0%
!! TTAATTTAGATGAGAAAATT+AGG - tig0029620:1888-1907 Msa1442070:intron 15.0%
!! GTTTGAATATATTTATCATT+TGG + tig0029620:1933-1952 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+AGG + tig0029620:2520-2539 None:intergenic 15.0%
!!! TTGTAACTTTTAAAACATAA+GGG + tig0029620:2257-2276 None:intergenic 15.0%
!!! TTTTATTAAACTCAATATCA+TGG - tig0029620:2420-2439 Msa1442070:intron 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG - tig0029620:2520-2539 Msa1442070:intron 15.0%
!! AAAATATTGTAAGGATATAA+AGG + tig0029620:2595-2614 None:intergenic 15.0%
!! CAAAATATATTTACATACAT+AGG + tig0029620:3016-3035 None:intergenic 15.0%
!! AATATATAAATAAACAGGTT+TGG + tig0029620:3139-3158 None:intergenic 15.0%
!! TATTTATATATTAATTCGTC+TGG - tig0029620:3147-3166 Msa1442070:intron 15.0%
!! ATTTATATATTAATTCGTCT+GGG - tig0029620:3148-3167 Msa1442070:intron 15.0%
!! TATGTGGTTATTTATATAAA+TGG - tig0029620:3224-3243 Msa1442070:intron 15.0%
!!! ATATGATTCATGAATATTTT+TGG - tig0029620:3899-3918 Msa1442070:intron 15.0%
!! TATAATGCATGAAATAATTA+TGG + tig0029620:4570-4589 None:intergenic 15.0%
!! TAATAAGAATAATGAAACAA+AGG + tig0029620:5051-5070 None:intergenic 15.0%
!! TCATTATTCTTATTACATAT+TGG - tig0029620:5056-5075 Msa1442070:CDS 15.0%
!! CATTATTCTTATTACATATT+GGG - tig0029620:5057-5076 Msa1442070:CDS 15.0%
!!! AAACATTTGAAATAAGAATA+AGG + tig0029620:5131-5150 None:intergenic 15.0%
!! CTAATTCTAATTTACTCTAT+TGG - tig0029620:950-969 Msa1442070:three_prime_UTR 20.0%
!!! AAAAAATGCAACTTTTAATC+CGG - tig0029620:1021-1040 Msa1442070:three_prime_UTR 20.0%
!!! TGGAATTGATTTTTTGTTTA+TGG - tig0029620:1161-1180 Msa1442070:CDS 20.0%
!! AACATCAACATAAACTAAAT+AGG + tig0029620:1566-1585 None:intergenic 20.0%
!! TTTACGAAACTAAAAACAAA+AGG + tig0029620:1621-1640 None:intergenic 20.0%
!! AAAGTTTACTTAAGAAGAAT+TGG - tig0029620:1811-1830 Msa1442070:intron 20.0%
!! AAGTTTACTTAAGAAGAATT+GGG - tig0029620:1812-1831 Msa1442070:intron 20.0%
!!! AATTGAATAGTTTGAAACTT+GGG - tig0029620:1971-1990 Msa1442070:intron 20.0%
!! GAAACCTAAAATAAACATAA+GGG + tig0029620:2551-2570 None:intergenic 20.0%
!! TGAAACCTAAAATAAACATA+AGG + tig0029620:2550-2569 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - tig0029620:2230-2249 Msa1442070:CDS 20.0%
!!! CTTGTAACTTTTAAAACATA+AGG + tig0029620:2258-2277 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTACAAGT+TGG - tig0029620:2259-2278 Msa1442070:CDS 20.0%
!!! TTGAAAACTTTAAAACGTAA+GGG - tig0029620:2491-2510 Msa1442070:CDS 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG + tig0029620:2230-2249 None:intergenic 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG - tig0029620:2519-2538 Msa1442070:intron 20.0%
!! TGAAACCTAAAATAAACATA+AGG - tig0029620:2550-2569 Msa1442070:intron 20.0%
!! GAAACCTAAAATAAACATAA+GGG - tig0029620:2551-2570 Msa1442070:intron 20.0%
!! TGACTTAACAAAATATTGTA+AGG + tig0029620:2604-2623 None:intergenic 20.0%
!!! ATTTGTCTAATTATTGATTG+TGG - tig0029620:2640-2659 Msa1442070:CDS 20.0%
!! AGATAAAAACAAAACATATC+AGG + tig0029620:2958-2977 None:intergenic 20.0%
!!! TTTTGTTTTTATCTCAATCT+TGG - tig0029620:2964-2983 Msa1442070:CDS 20.0%
!! GTAAAAAGATGAAATAATCA+AGG + tig0029620:2991-3010 None:intergenic 20.0%
!! AAAAAAATATTAGGAAGAGT+AGG + tig0029620:3454-3473 None:intergenic 20.0%
!!! AATTATTTATCGTGTCTTTT+TGG - tig0029620:3841-3860 Msa1442070:intron 20.0%
!! TCATATTTATAAAACCTAGA+AGG + tig0029620:3885-3904 None:intergenic 20.0%
!! TGACAAAATAATGTATTCAA+TGG - tig0029620:4485-4504 Msa1442070:intron 20.0%
!! AAAATAATGTATTCAATGGA+TGG - tig0029620:4489-4508 Msa1442070:intron 20.0%
!! AAATAATGTATTCAATGGAT+GGG - tig0029620:4490-4509 Msa1442070:intron 20.0%
!! AAAAATGCAACTTTTAATCC+GGG - tig0029620:1022-1041 Msa1442070:three_prime_UTR 25.0%
! CAATTCCACAATAAAATTGA+TGG + tig0029620:1149-1168 None:intergenic 25.0%
! GAAACTTAACAGTAAACTAT+AGG + tig0029620:1207-1226 None:intergenic 25.0%
! AACTAAATAGGAAACAAAGA+CGG + tig0029620:1554-1573 None:intergenic 25.0%
!!! ATGTTATTTTGTTGTAGCTT+TGG - tig0029620:1595-1614 Msa1442070:CDS 25.0%
! TAGTTTCGTAAAAAAGAAGT+TGG - tig0029620:1629-1648 Msa1442070:intron 25.0%
! TTTGCTTGTAAACACAATAT+AGG - tig0029620:1703-1722 Msa1442070:intron 25.0%
! TTGCTTGTAAACACAATATA+GGG - tig0029620:1704-1723 Msa1442070:intron 25.0%
! TGGGTAAATGTTATTATGTA+AGG - tig0029620:1844-1863 Msa1442070:intron 25.0%
! TATTATGTAAGGCTTGAAAT+TGG - tig0029620:1855-1874 Msa1442070:intron 25.0%
! TTTAGATGAGAAAATTAGGA+AGG - tig0029620:1892-1911 Msa1442070:intron 25.0%
!! CAATTGAATAGTTTGAAACT+TGG - tig0029620:1970-1989 Msa1442070:intron 25.0%
! AAGATAAAACGTCAAGATTA+GGG + tig0029620:2004-2023 None:intergenic 25.0%
! TAAGATAAAACGTCAAGATT+AGG + tig0029620:2005-2024 None:intergenic 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG - tig0029620:2201-2220 Msa1442070:intron 25.0%
! ACTAGACCTTATAAAGATTT+GGG - tig0029620:2325-2344 Msa1442070:intron 25.0%
! TGTTAACCCAAATCTTTATA+AGG + tig0029620:2334-2353 None:intergenic 25.0%
!!! CTTGAAAACTTTAAAACGTA+AGG - tig0029620:2490-2509 Msa1442070:CDS 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + tig0029620:2201-2220 None:intergenic 25.0%
!!! TGATCCCTTATGTTTATTTT+AGG + tig0029620:2558-2577 None:intergenic 25.0%
! AATCTGTACGAATCATAAAA+GGG + tig0029620:3055-3074 None:intergenic 25.0%
! TCCTTGTAATGTATAATATG+TGG - tig0029620:3208-3227 Msa1442070:intron 25.0%
! ACCACATATTATACATTACA+AGG + tig0029620:3212-3231 None:intergenic 25.0%
!! TGATATACTATAGGTTGAAA+GGG + tig0029620:3479-3498 None:intergenic 25.0%
!! TTGATATACTATAGGTTGAA+AGG + tig0029620:3480-3499 None:intergenic 25.0%
! CATCAGATTTGATATACTAT+AGG + tig0029620:3488-3507 None:intergenic 25.0%
!! TTTCAAAATTTTACCCAGAT+AGG + tig0029620:3615-3634 None:intergenic 25.0%
!!! TCATGAATATTTTTGGAGAA+AGG - tig0029620:3906-3925 Msa1442070:intron 25.0%
!! TACTGTCTCTATTATTGTTT+TGG - tig0029620:4283-4302 Msa1442070:intron 25.0%
! AATAATGTATTCAATGGATG+GGG - tig0029620:4491-4510 Msa1442070:intron 25.0%
! TGAATGGTAATATTTCCATT+TGG + tig0029620:4825-4844 None:intergenic 25.0%
! ATTCATCATCACATTGATAA+CGG + tig0029620:4995-5014 None:intergenic 25.0%
! TATTCTTATTACATATTGGG+TGG - tig0029620:5060-5079 Msa1442070:CDS 25.0%
!! CATTTGAAATAAGAATAAGG+CGG + tig0029620:5128-5147 None:intergenic 25.0%
! CTTATTTCAAATGTTTATGC+TGG - tig0029620:5135-5154 Msa1442070:five_prime_UTR 25.0%
GAGTGTAAGAAGATAATAAC+TGG - tig0029620:660-679 Msa1442070:three_prime_UTR 30.0%
TGTAAGAAGATAATAACTGG+TGG - tig0029620:663-682 Msa1442070:three_prime_UTR 30.0%
TTCCACAATAAAATTGATGG+AGG + tig0029620:1146-1165 None:intergenic 30.0%
!!! AAATCTGCTACTGGTTTTAA+GGG + tig0029620:1254-1273 None:intergenic 30.0%
!!! AAAATCTGCTACTGGTTTTA+AGG + tig0029620:1255-1274 None:intergenic 30.0%
ATAAGATTAATTCCTCCTCT+GGG - tig0029620:1330-1349 Msa1442070:CDS 30.0%
ACTAAATAGGAAACAAAGAC+GGG + tig0029620:1553-1572 None:intergenic 30.0%
TACTTAAGAAGAATTGGGAA+TGG - tig0029620:1817-1836 Msa1442070:intron 30.0%
ACTTAAGAAGAATTGGGAAT+GGG - tig0029620:1818-1837 Msa1442070:intron 30.0%
TTATGTATCATATGCAGTGA+TGG - tig0029620:2022-2041 Msa1442070:intron 30.0%
! TTAAGAGCATATAGAAACTG+CGG + tig0029620:2065-2084 None:intergenic 30.0%
AGGTTCTCATCATTTATATC+CGG - tig0029620:2153-2172 Msa1442070:intron 30.0%
!! TGGTCCCTTATGTTTATTTT+AGG - tig0029620:2190-2209 Msa1442070:intron 30.0%
ATCTTTATAAGGTCTAGTGA+CGG + tig0029620:2323-2342 None:intergenic 30.0%
CACTAGACCTTATAAAGATT+TGG - tig0029620:2324-2343 Msa1442070:intron 30.0%
! AAAGATTTGGGTTAACAATG+TGG - tig0029620:2337-2356 Msa1442070:intron 30.0%
! AAGATTTGGGTTAACAATGT+GGG - tig0029620:2338-2357 Msa1442070:intron 30.0%
TTAAACTCAATATCATGGCA+CGG - tig0029620:2425-2444 Msa1442070:intron 30.0%
AATACGCGGTGATAAAATTT+GGG + tig0029620:2684-2703 None:intergenic 30.0%
AAATACGCGGTGATAAAATT+TGG + tig0029620:2685-2704 None:intergenic 30.0%
TATAGTGTTAGTGATTTGAC+AGG - tig0029620:2724-2743 Msa1442070:intron 30.0%
TTCATCTGCCAAAAGTTATT+TGG - tig0029620:2754-2773 Msa1442070:intron 30.0%
! ACTATGAGCCAAATAACTTT+TGG + tig0029620:2765-2784 None:intergenic 30.0%
! AAAAGTTATTTGGCTCATAG+TGG - tig0029620:2764-2783 Msa1442070:intron 30.0%
! AAAGTTATTTGGCTCATAGT+GGG - tig0029620:2765-2784 Msa1442070:intron 30.0%
AAACATATCAGGATACTTAC+CGG + tig0029620:2947-2966 None:intergenic 30.0%
CAATCTGTACGAATCATAAA+AGG + tig0029620:3056-3075 None:intergenic 30.0%
ATAAATAAACAGGTTTGGCA+GGG + tig0029620:3134-3153 None:intergenic 30.0%
TATAAATAAACAGGTTTGGC+AGG + tig0029620:3135-3154 None:intergenic 30.0%
TCATTCTTCTCATTCTAATC+CGG + tig0029620:3268-3287 None:intergenic 30.0%
GAAAGGGGGAAAAAAATATT+AGG + tig0029620:3463-3482 None:intergenic 30.0%
! ATATACTATAGGTTGAAAGG+GGG + tig0029620:3477-3496 None:intergenic 30.0%
! GATATACTATAGGTTGAAAG+GGG + tig0029620:3478-3497 None:intergenic 30.0%
ATTCTGTCTGTTGGAAAAAA+GGG - tig0029620:3552-3571 Msa1442070:intron 30.0%
TCTGAATACTGAATGATTTG+TGG - tig0029620:3658-3677 Msa1442070:CDS 30.0%
TTGTACAATAGCTATGTACA+AGG - tig0029620:3706-3725 Msa1442070:CDS 30.0%
AGACTAATCCCTAAACATTT+GGG + tig0029620:3746-3765 None:intergenic 30.0%
AAGACTAATCCCTAAACATT+TGG + tig0029620:3747-3766 None:intergenic 30.0%
!! ATTAGTCTTAGAATCAGCTA+AGG - tig0029620:3758-3777 Msa1442070:intron 30.0%
TAAAACCTAGAAGGAATCAT+TGG + tig0029620:3876-3895 None:intergenic 30.0%
TGCATTGAGTGTTAATGTAT+AGG - tig0029620:3946-3965 Msa1442070:intron 30.0%
AAACAAAAAACTGACCGAAA+CGG + tig0029620:4027-4046 None:intergenic 30.0%
! TTTTATCTTTACATCGTCAG+TGG - tig0029620:4090-4109 Msa1442070:intron 30.0%
TATATTTGGGAAATGCATAC+AGG - tig0029620:4323-4342 Msa1442070:intron 30.0%
TATGTATCCAATGCCTTTAA+AGG - tig0029620:4732-4751 Msa1442070:intron 30.0%
TCTAAACATTAACTGGTGAA+TGG + tig0029620:4841-4860 None:intergenic 30.0%
TACAGACTCTAAACATTAAC+TGG + tig0029620:4848-4867 None:intergenic 30.0%
TTCAACTAGAGAAAATGACT+AGG - tig0029620:4933-4952 Msa1442070:CDS 30.0%
GGATATAATCTTCTAATACG+GGG + tig0029620:5107-5126 None:intergenic 30.0%
CGGATATAATCTTCTAATAC+GGG + tig0029620:5108-5127 None:intergenic 30.0%
GCGGATATAATCTTCTAATA+CGG + tig0029620:5109-5128 None:intergenic 30.0%
AGACAGGAAAATCTCAAAGA+TGG - tig0029620:887-906 Msa1442070:three_prime_UTR 35.0%
! ATCCGGGTCTGAATTATTTT+AGG - tig0029620:1038-1057 Msa1442070:three_prime_UTR 35.0%
!! TCCGGGTCTGAATTATTTTA+GGG - tig0029620:1039-1058 Msa1442070:three_prime_UTR 35.0%
TCCCTAAAATAATTCAGACC+CGG + tig0029620:1043-1062 None:intergenic 35.0%
! TGCCTCCATCAATTTTATTG+TGG - tig0029620:1141-1160 Msa1442070:CDS 35.0%
!!! AATCTGCTACTGGTTTTAAG+GGG + tig0029620:1253-1272 None:intergenic 35.0%
AATTCAGCAAAATCTGCTAC+TGG + tig0029620:1263-1282 None:intergenic 35.0%
ATAAGATTATCGTCTCCTCA+TGG - tig0029620:1289-1308 Msa1442070:CDS 35.0%
GATAAGATTAATTCCTCCTC+TGG - tig0029620:1329-1348 Msa1442070:CDS 35.0%
TATCAGCATAAGTTGCAGAA+AGG - tig0029620:1657-1676 Msa1442070:intron 35.0%
ATCAGCATAAGTTGCAGAAA+GGG - tig0029620:1658-1677 Msa1442070:intron 35.0%
AAGAATTGGGAATGGGAATT+GGG - tig0029620:1825-1844 Msa1442070:intron 35.0%
TGAGAAAATTAGGAAGGTAG+AGG - tig0029620:1898-1917 Msa1442070:intron 35.0%
CTAACTTATTCCAACGTGAA+TGG - tig0029620:2454-2473 Msa1442070:intron 35.0%
CTTCTGAACAGTTAAATACG+CGG + tig0029620:2698-2717 None:intergenic 35.0%
ATGAGTGTTAGTATGTACAG+AGG - tig0029620:2836-2855 Msa1442070:intron 35.0%
GATTCTCGGATATGTTATCT+TGG - tig0029620:2917-2936 Msa1442070:CDS 35.0%
GATATGTTATCTTGGTATGC+CGG - tig0029620:2925-2944 Msa1442070:CDS 35.0%
!! TTATTCTGGCTCAACTTATG+TGG - tig0029620:3094-3113 Msa1442070:intron 35.0%
TACAGAAATCATATCAGCGA+TGG + tig0029620:3320-3339 None:intergenic 35.0%
! TTAGGAAGAGTAGGTTGAAA+GGG + tig0029620:3445-3464 None:intergenic 35.0%
! ATTAGGAAGAGTAGGTTGAA+AGG + tig0029620:3446-3465 None:intergenic 35.0%
TGATGTCTACACTGTGAATT+TGG - tig0029620:3503-3522 Msa1442070:intron 35.0%
GATTCTGTCTGTTGGAAAAA+AGG - tig0029620:3551-3570 Msa1442070:intron 35.0%
ATCCAGTAAGTATCCTATCT+GGG - tig0029620:3599-3618 Msa1442070:intron 35.0%
! TACTGAATGATTTGTGGATC+TGG - tig0029620:3664-3683 Msa1442070:CDS 35.0%
! ACTGAATGATTTGTGGATCT+GGG - tig0029620:3665-3684 Msa1442070:CDS 35.0%
GAATCAAGCCCAAATGTTTA+GGG - tig0029620:3735-3754 Msa1442070:CDS 35.0%
CAACACTGAAATGAACACTT+TGG + tig0029620:3974-3993 None:intergenic 35.0%
TTCAGTGTTGCGTTTGAATT+AGG - tig0029620:3984-4003 Msa1442070:intron 35.0%
TCAGTGTTGCGTTTGAATTA+GGG - tig0029620:3985-4004 Msa1442070:intron 35.0%
TTGCGTTTGAATTAGGGAAT+AGG - tig0029620:3991-4010 Msa1442070:intron 35.0%
TGCGTTTGAATTAGGGAATA+GGG - tig0029620:3992-4011 Msa1442070:intron 35.0%
TAGGGATATTTCTTCCGTTT+CGG - tig0029620:4010-4029 Msa1442070:intron 35.0%
! TGTTGCAGATATGTGGATTA+AGG - tig0029620:4221-4240 Msa1442070:intron 35.0%
TGAGTATTACATTGAGCTGT+TGG - tig0029620:4368-4387 Msa1442070:intron 35.0%
GAAATTACCTAAAGTCCTGA+AGG + tig0029620:4683-4702 None:intergenic 35.0%
! TATCCAATGCCTTTAAAGGT+TGG - tig0029620:4736-4755 Msa1442070:intron 35.0%
TAGAGTCTGTATCTGTACAT+TGG - tig0029620:4857-4876 Msa1442070:intron 35.0%
ACTTCAGAAAATAATCCCCA+AGG + tig0029620:4959-4978 None:intergenic 35.0%
! GTGATGATGAATGAACTTCA+TGG - tig0029620:5003-5022 Msa1442070:CDS 35.0%
AGAAGACATTGCAACCAAAC+TGG + tig0029620:705-724 None:intergenic 40.0%
ATGAATGGTGAAGAGAGTGA+TGG + tig0029620:737-756 None:intergenic 40.0%
GTTGAAGAATCGTGGATGAA+TGG + tig0029620:752-771 None:intergenic 40.0%
AAGGAAGAAGCTTAGTTCCA+TGG + tig0029620:781-800 None:intergenic 40.0%
GAGGGAGCAGTTAAAAGAAA+AGG + tig0029620:846-865 None:intergenic 40.0%
! TTTTCCTGTCTGAACTGCTT+GGG + tig0029620:878-897 None:intergenic 40.0%
! ATTTTCCTGTCTGAACTGCT+TGG + tig0029620:879-898 None:intergenic 40.0%
!! CTGTACTACTGATTTCCATG+AGG + tig0029620:1307-1326 None:intergenic 40.0%
ATCCTTGTACCTTAGATGAG+TGG - tig0029620:1354-1373 Msa1442070:CDS 40.0%
AGTGATGTATGTCGTATGAG+AGG - tig0029620:1408-1427 Msa1442070:CDS 40.0%
GTGATGTATGTCGTATGAGA+GGG - tig0029620:1409-1428 Msa1442070:CDS 40.0%
GGCAGAGTTATGTGAAGTTT+AGG - tig0029620:1725-1744 Msa1442070:intron 40.0%
TAAGATCTTCAACGCGAACA+AGG - tig0029620:1775-1794 Msa1442070:intron 40.0%
AAGATCTTCAACGCGAACAA+GGG - tig0029620:1776-1795 Msa1442070:intron 40.0%
GAAGAATTGGGAATGGGAAT+TGG - tig0029620:1824-1843 Msa1442070:intron 40.0%
AAACGTCAAGATTAGGGCTA+GGG + tig0029620:1998-2017 None:intergenic 40.0%
AAAACGTCAAGATTAGGGCT+AGG + tig0029620:1999-2018 None:intergenic 40.0%
ATGAACATGTCCATTTGCGA+GGG + tig0029620:2089-2108 None:intergenic 40.0%
TATGAACATGTCCATTTGCG+AGG + tig0029620:2090-2109 None:intergenic 40.0%
ATCCGGCTTAATTGCATGTT+TGG - tig0029620:2170-2189 Msa1442070:intron 40.0%
GACCAAACATGCAATTAAGC+CGG + tig0029620:2175-2194 None:intergenic 40.0%
! TATAAGGTCTAGTGACGGAA+GGG + tig0029620:2318-2337 None:intergenic 40.0%
! TTATAAGGTCTAGTGACGGA+AGG + tig0029620:2319-2338 None:intergenic 40.0%
GATGAGTAGTGTATCTAGCA+TGG - tig0029620:2787-2806 Msa1442070:intron 40.0%
AGTGTTAGTATGTACAGAGG+AGG - tig0029620:2839-2858 Msa1442070:intron 40.0%
TTAGTATGTACAGAGGAGGT+AGG - tig0029620:2843-2862 Msa1442070:intron 40.0%
TAGTATGTACAGAGGAGGTA+GGG - tig0029620:2844-2863 Msa1442070:intron 40.0%
AAGAGCAAAGAAGGCAAATC+CGG + tig0029620:2896-2915 None:intergenic 40.0%
CTTCTTTGCTCTTGGATTCT+CGG - tig0029620:2903-2922 Msa1442070:CDS 40.0%
AGCCAGAATAAGTTCTGTCA+CGG + tig0029620:3085-3104 None:intergenic 40.0%
! TATTAATTCGTCTGGGACTC+AGG - tig0029620:3155-3174 Msa1442070:intron 40.0%
GTCTTTCTTTCCTCTGTTTC+CGG - tig0029620:3246-3265 Msa1442070:intron 40.0%
TCATTCTAATCCGGAAACAG+AGG + tig0029620:3259-3278 None:intergenic 40.0%
AATGAGAAGAATGAGACCGT+GGG - tig0029620:3274-3293 Msa1442070:intron 40.0%
AAAACGCAACATTGCGATGT+GGG + tig0029620:3371-3390 None:intergenic 40.0%
! TAGGAAGAGTAGGTTGAAAG+GGG + tig0029620:3444-3463 None:intergenic 40.0%
GGATACTTACTGGATGAATG+TGG + tig0029620:3594-3613 None:intergenic 40.0%
CATCCAGTAAGTATCCTATC+TGG - tig0029620:3598-3617 Msa1442070:intron 40.0%
TACCCAGATAGGATACTTAC+TGG + tig0029620:3604-3623 None:intergenic 40.0%
ATAGCTATGTACAAGGCTGA+AGG - tig0029620:3713-3732 Msa1442070:CDS 40.0%
GGAATCAAGCCCAAATGTTT+AGG - tig0029620:3734-3753 Msa1442070:CDS 40.0%
ACCATCCAATGATTCCTTCT+AGG - tig0029620:3868-3887 Msa1442070:intron 40.0%
ACCTAGAAGGAATCATTGGA+TGG + tig0029620:3872-3891 None:intergenic 40.0%
TACATCGTCAGTGGAATGTA+AGG - tig0029620:4099-4118 Msa1442070:intron 40.0%
! CACTTGATCTGTGGACTTTT+GGG + tig0029620:4197-4216 None:intergenic 40.0%
TACATTGAGCTGTTGGCAAA+AGG - tig0029620:4375-4394 Msa1442070:intron 40.0%
AAAAGGAACAGGGAAGTCAA+AGG - tig0029620:4392-4411 Msa1442070:intron 40.0%
AAATTGCTAAAGACGTCCAG+AGG - tig0029620:4418-4437 Msa1442070:intron 40.0%
GTTGGAAATATCTAGTCCTC+TGG + tig0029620:4437-4456 None:intergenic 40.0%
GACTAGATATTTCCAACCAC+AGG - tig0029620:4440-4459 Msa1442070:intron 40.0%
CCAAAACCACCAACCTTTAA+AGG + tig0029620:4748-4767 None:intergenic 40.0%
!!! CCTTTAAAGGTTGGTGGTTT+TGG - tig0029620:4745-4764 Msa1442070:intron 40.0%
TTCAAGTCGACGCCTAATAT+AGG - tig0029620:4768-4787 Msa1442070:intron 40.0%
CTGCTTGACCTTCCTATATT+AGG + tig0029620:4783-4802 None:intergenic 40.0%
GCAGAGATCTTCACATATCA+AGG - tig0029620:4799-4818 Msa1442070:intron 40.0%
CTTCACATATCAAGGCCAAA+TGG - tig0029620:4807-4826 Msa1442070:intron 40.0%
!! TGTATCTGTACATTGGCTCT+GGG - tig0029620:4864-4883 Msa1442070:intron 40.0%
CTCTAGTTGAAACAAAGCAC+AGG + tig0029620:4924-4943 None:intergenic 40.0%
TAGAGAAAATGACTAGGCCT+TGG - tig0029620:4939-4958 Msa1442070:CDS 40.0%
AGAGAAAATGACTAGGCCTT+GGG - tig0029620:4940-4959 Msa1442070:CDS 40.0%
ATCTTCTAATACGGGGAACA+AGG + tig0029620:5100-5119 None:intergenic 40.0%
CATTGCAACCAAACTGGCTA+GGG + tig0029620:699-718 None:intergenic 45.0%
ACATTGCAACCAAACTGGCT+AGG + tig0029620:700-719 None:intergenic 45.0%
GATTCTTCAACTACTCGCCA+TGG - tig0029620:761-780 Msa1442070:three_prime_UTR 45.0%
!! GAAAAGGACTTGAAGCATCG+CGG + tig0029620:830-849 None:intergenic 45.0%
TTTCCTGTCTGAACTGCTTG+GGG + tig0029620:877-896 None:intergenic 45.0%
CTTGTACCTTAGATGAGTGG+CGG - tig0029620:1357-1376 Msa1442070:CDS 45.0%
TTGTACCTTAGATGAGTGGC+GGG - tig0029620:1358-1377 Msa1442070:CDS 45.0%
! ACAACCAAAGCACTCACAAG+GGG + tig0029620:1503-1522 None:intergenic 45.0%
! GACAACCAAAGCACTCACAA+GGG + tig0029620:1504-1523 None:intergenic 45.0%
CTTGTGAGTGCTTTGGTTGT+CGG - tig0029620:1503-1522 Msa1442070:intron 45.0%
! TTGGTTGTCGGTGCAGTTTT+TGG - tig0029620:1515-1534 Msa1442070:intron 45.0%
!!! GCAGTTTTTGGAACTTCGCT+TGG - tig0029620:1527-1546 Msa1442070:intron 45.0%
AGATCTTCAACGCGAACAAG+GGG - tig0029620:1777-1796 Msa1442070:intron 45.0%
TGCTCTTAATCCCTCGCAAA+TGG - tig0029620:2076-2095 Msa1442070:intron 45.0%
GATGTCTGAGAGAGTTACAG+AGG - tig0029620:2133-2152 Msa1442070:intron 45.0%
TGGGTTAACAATGTGGGTGA+TGG - tig0029620:2344-2363 Msa1442070:intron 45.0%
ACTCAATATCATGGCACGGA+AGG - tig0029620:2429-2448 Msa1442070:intron 45.0%
CTCAATATCATGGCACGGAA+GGG - tig0029620:2430-2449 Msa1442070:intron 45.0%
! TTCCAACGTGAATGGCGTTT+TGG - tig0029620:2462-2481 Msa1442070:intron 45.0%
ATCCAAAACGCCATTCACGT+TGG + tig0029620:2467-2486 None:intergenic 45.0%
AGTATGTACAGAGGAGGTAG+GGG - tig0029620:2845-2864 Msa1442070:intron 45.0%
! AAATCCGGTGGAGCATTTCT+AGG + tig0029620:2881-2900 None:intergenic 45.0%
GGATTTGCCTTCTTTGCTCT+TGG - tig0029620:2895-2914 Msa1442070:CDS 45.0%
CGAGAATCCAAGAGCAAAGA+AGG + tig0029620:2905-2924 None:intergenic 45.0%
AGAATAAGTTCTGTCACGGC+TGG + tig0029620:3081-3100 None:intergenic 45.0%
AGCCGTGACAGAACTTATTC+TGG - tig0029620:3080-3099 Msa1442070:intron 45.0%
! TCTGGCTCAACTTATGTGGT+TGG - tig0029620:3098-3117 Msa1442070:intron 45.0%
GAATGAGAAGAATGAGACCG+TGG - tig0029620:3273-3292 Msa1442070:intron 45.0%
AGCATCAGTTTCTGATCCCA+CGG + tig0029620:3293-3312 None:intergenic 45.0%
CAAAACGCAACATTGCGATG+TGG + tig0029620:3372-3391 None:intergenic 45.0%
! CACATCGCAATGTTGCGTTT+TGG - tig0029620:3370-3389 Msa1442070:intron 45.0%
! AGGAAGAGTAGGTTGAAAGG+GGG + tig0029620:3443-3462 None:intergenic 45.0%
CTACACTGTGAATTTGGCCA+TGG - tig0029620:3509-3528 Msa1442070:intron 45.0%
CAGACAGAATCATTGCTGCT+TGG + tig0029620:3542-3561 None:intergenic 45.0%
GCAGCAATGATTCTGTCTGT+TGG - tig0029620:3543-3562 Msa1442070:intron 45.0%
ATGAATGTGGCAGTACAGCA+CGG + tig0029620:3581-3600 None:intergenic 45.0%
! CCACTTGATCTGTGGACTTT+TGG + tig0029620:4198-4217 None:intergenic 45.0%
CCAAAAGTCCACAGATCAAG+TGG - tig0029620:4195-4214 Msa1442070:intron 45.0%
CAACAGAACCACTTGATCTG+TGG + tig0029620:4206-4225 None:intergenic 45.0%
! GTGGTTCTGTTGCAGATATG+TGG - tig0029620:4214-4233 Msa1442070:intron 45.0%
ATGCATACAGGCAAAAGAGC+TGG - tig0029620:4335-4354 Msa1442070:intron 45.0%
AGCTGTTGGCAAAAGGAACA+GGG - tig0029620:4382-4401 Msa1442070:intron 45.0%
ATTCTATGGCATCCTGTGGT+TGG + tig0029620:4455-4474 None:intergenic 45.0%
CCACAGGATGCCATAGAATA+CGG - tig0029620:4456-4475 Msa1442070:intron 45.0%
! GGGAAAGTGCATATGAGAAG+CGG - tig0029620:4511-4530 Msa1442070:intron 45.0%
! GGAAAGTGCATATGAGAAGC+GGG - tig0029620:4512-4531 Msa1442070:intron 45.0%
! CCACCAACCTTTAAAGGCAT+TGG + tig0029620:4742-4761 None:intergenic 45.0%
! CCAATGCCTTTAAAGGTTGG+TGG - tig0029620:4739-4758 Msa1442070:intron 45.0%
AGTCGACGCCTAATATAGGA+AGG - tig0029620:4772-4791 Msa1442070:intron 45.0%
!! CTGTATCTGTACATTGGCTC+TGG - tig0029620:4863-4882 Msa1442070:intron 45.0%
!! GTATCTGTACATTGGCTCTG+GGG - tig0029620:4865-4884 Msa1442070:intron 45.0%
!! TATCTGTACATTGGCTCTGG+GGG - tig0029620:4866-4885 Msa1442070:intron 45.0%
GAGAAAATGACTAGGCCTTG+GGG - tig0029620:4941-4960 Msa1442070:CDS 45.0%
ACATCACACCCTAGCCAGTT+TGG - tig0029620:688-707 Msa1442070:three_prime_UTR 50.0%
GGCGAGTAGTTGAAGAATCG+TGG + tig0029620:760-779 None:intergenic 50.0%
TAAGGTACAAGGATGCCCAG+AGG + tig0029620:1348-1367 None:intergenic 50.0%
! CGCCACTCATCTAAGGTACA+AGG + tig0029620:1359-1378 None:intergenic 50.0%
ATCACTATCGACCCCAACAC+AGG + tig0029620:1394-1413 None:intergenic 50.0%
CGTATGAGAGGGATTGTGCT+AGG - tig0029620:1420-1439 Msa1442070:CDS 50.0%
! CGACAACCAAAGCACTCACA+AGG + tig0029620:1505-1524 None:intergenic 50.0%
CTCTCAGACATCTGATGCAC+AGG + tig0029620:2125-2144 None:intergenic 50.0%
AAGGCCTAGAAATGCTCCAC+CGG - tig0029620:2874-2893 Msa1442070:CDS 50.0%
AGCAAAGAAGGCAAATCCGG+TGG + tig0029620:2893-2912 None:intergenic 50.0%
GTGAATTTGGCCATGGCGTT+TGG - tig0029620:3516-3535 Msa1442070:intron 50.0%
CATACAGGCAAAAGAGCTGG+AGG - tig0029620:4338-4357 Msa1442070:intron 50.0%
GAGCTGTTGGCAAAAGGAAC+AGG - tig0029620:4381-4400 Msa1442070:intron 50.0%
CCGTATTCTATGGCATCCTG+TGG + tig0029620:4459-4478 None:intergenic 50.0%
GTCAGCGAGTCCGTATTCTA+TGG + tig0029620:4469-4488 None:intergenic 50.0%
!! TACGTGCTCAAAGAGCACTG+CGG - tig0029620:4630-4649 Msa1442070:intron 50.0%
GTCTGAACTGCTTGGGGATG+CGG + tig0029620:871-890 None:intergenic 55.0%
CATCCCCAAGCAGTTCAGAC+AGG - tig0029620:871-890 Msa1442070:three_prime_UTR 55.0%
! TACCTTAGATGAGTGGCGGG+TGG - tig0029620:1361-1380 Msa1442070:CDS 55.0%
GGTGGAGCTTGTCCTGTGTT+GGG - tig0029620:1379-1398 Msa1442070:CDS 55.0%
GTGGAGCTTGTCCTGTGTTG+GGG - tig0029620:1380-1399 Msa1442070:CDS 55.0%
TCCTCCCCTTGTGAGTGCTT+TGG - tig0029620:1496-1515 Msa1442070:intron 55.0%
! ACCAAAGCACTCACAAGGGG+AGG + tig0029620:1500-1519 None:intergenic 55.0%
TACAGAGGAGGTAGGGGAAC+AGG - tig0029620:2851-2870 Msa1442070:intron 55.0%
AGCGGCTCCTTCAGGACTTT+AGG - tig0029620:4673-4692 Msa1442070:intron 55.0%
CGGGGAACAAGGTGTGCATT+AGG + tig0029620:5089-5108 None:intergenic 55.0%
GTGGCAGTGGCGTGAGGAAA+AGG + tig0029620:800-819 None:intergenic 60.0%
!! GAAGCATCGCGGTTTGCGTG+TGG + tig0029620:819-838 None:intergenic 60.0%
GGTACAAGGATGCCCAGAGG+AGG + tig0029620:1345-1364 None:intergenic 60.0%
CTCCACCCGCCACTCATCTA+AGG + tig0029620:1366-1385 None:intergenic 60.0%
GGGTGGAGCTTGTCCTGTGT+TGG - tig0029620:1378-1397 Msa1442070:CDS 60.0%
TGCTAGGTCTTGCAGCGTCG+TGG - tig0029620:1436-1455 Msa1442070:CDS 60.0%
GCTAGGTCTTGCAGCGTCGT+GGG - tig0029620:1437-1456 Msa1442070:CDS 60.0%
CTAGGTCTTGCAGCGTCGTG+GGG - tig0029620:1438-1457 Msa1442070:CDS 60.0%
TCGTGGGGTGTGTGTGTGGT+GGG - tig0029620:1453-1472 Msa1442070:intron 60.0%
GAGGAGGTAGGGGAACAGGA+AGG - tig0029620:2855-2874 Msa1442070:intron 60.0%
! TGCTGCTTGGCCAAACGCCA+TGG + tig0029620:3529-3548 None:intergenic 60.0%
!! GCTCAAAGAGCACTGCGGAG+AGG - tig0029620:4635-4654 Msa1442070:intron 60.0%
!! CAAAGAGCACTGCGGAGAGG+TGG - tig0029620:4638-4657 Msa1442070:intron 60.0%
!! AGGTGGTGGGAACCCTCAAG+CGG - tig0029620:4655-4674 Msa1442070:intron 60.0%
AACCCTCAAGCGGCTCCTTC+AGG - tig0029620:4665-4684 Msa1442070:intron 60.0%
GTCCTGAAGGAGCCGCTTGA+GGG + tig0029620:4670-4689 None:intergenic 60.0%
AGTCCTGAAGGAGCCGCTTG+AGG + tig0029620:4671-4690 None:intergenic 60.0%
TTGCGTGTGGCAGTGGCGTG+AGG + tig0029620:806-825 None:intergenic 65.0%
TCGCGGTTTGCGTGTGGCAG+TGG + tig0029620:813-832 None:intergenic 65.0%
CTGCTTGGGGATGCGGTCGA+GGG + tig0029620:864-883 None:intergenic 65.0%
ACTGCTTGGGGATGCGGTCG+AGG + tig0029620:865-884 None:intergenic 65.0%
AGCGTCGTGGGGTGTGTGTG+TGG - tig0029620:1449-1468 Msa1442070:intron 65.0%
GTCGTGGGGTGTGTGTGTGG+TGG - tig0029620:1452-1471 Msa1442070:intron 65.0%
CGTGGGGTGTGTGTGTGGTG+GGG - tig0029620:1454-1473 Msa1442070:intron 65.0%
GTGGGGTGTGTGTGTGGTGG+GGG - tig0029620:1455-1474 Msa1442070:intron 65.0%
! TGGGGTGTGTGTGTGGTGGG+GGG - tig0029620:1456-1475 Msa1442070:intron 65.0%
! GTGTGTGGTGGGGGGTTGTC+TGG - tig0029620:1464-1483 Msa1442070:intron 65.0%
!! AGAGCACTGCGGAGAGGTGG+TGG - tig0029620:4641-4660 Msa1442070:intron 65.0%
! GAGCACTGCGGAGAGGTGGT+GGG - tig0029620:4642-4661 Msa1442070:intron 65.0%
Chromosome Type Strat End Strand Name
tig0029620 gene 647 5158 647 ID=Msa1442070;Name=Msa1442070
tig0029620 mRNA 647 5158 647 ID=Msa1442070-mRNA-1;Parent=Msa1442070;Name=Msa1442070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=69|1|1|1|1|1|9|464|373
tig0029620 exon 647 1188 647 ID=Msa1442070-mRNA-1:exon:13195;Parent=Msa1442070-mRNA-1
tig0029620 exon 1272 1460 1272 ID=Msa1442070-mRNA-1:exon:13194;Parent=Msa1442070-mRNA-1
tig0029620 exon 1563 1624 1563 ID=Msa1442070-mRNA-1:exon:13193;Parent=Msa1442070-mRNA-1
tig0029620 exon 2202 2313 2202 ID=Msa1442070-mRNA-1:exon:13192;Parent=Msa1442070-mRNA-1
tig0029620 exon 2469 2531 2469 ID=Msa1442070-mRNA-1:exon:13191;Parent=Msa1442070-mRNA-1
tig0029620 exon 2629 2733 2629 ID=Msa1442070-mRNA-1:exon:13190;Parent=Msa1442070-mRNA-1
tig0029620 exon 2859 3059 2859 ID=Msa1442070-mRNA-1:exon:13189;Parent=Msa1442070-mRNA-1
tig0029620 exon 3651 3766 3651 ID=Msa1442070-mRNA-1:exon:13188;Parent=Msa1442070-mRNA-1
tig0029620 exon 4894 5158 4894 ID=Msa1442070-mRNA-1:exon:13187;Parent=Msa1442070-mRNA-1
tig0029620 five_prime_UTR 5090 5158 5090 ID=Msa1442070-mRNA-1:five_prime_utr;Parent=Msa1442070-mRNA-1
tig0029620 CDS 4894 5089 4894 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 3651 3766 3651 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 2859 3059 2859 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 2629 2733 2629 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 2469 2531 2469 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 2202 2313 2202 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 1563 1624 1563 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 1272 1460 1272 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 CDS 1111 1188 1111 ID=Msa1442070-mRNA-1:cds;Parent=Msa1442070-mRNA-1
tig0029620 three_prime_UTR 647 1110 647 ID=Msa1442070-mRNA-1:three_prime_utr;Parent=Msa1442070-mRNA-1
Gene Sequence

>Msa1442070

ATGTCTTCTTCGCTCTCACCATCACTCTCTTCACCATTCATCCACGATTCTTCAACTACTCGCCATGGAACTAAGCTTCTTCCTTTTCCTCACGCCACTGCCACACGCAAACCGCGATGCTTCAAGTCCTTTTCTTTTAACTGCTCCCTCGACCGCATCCCCAAGCAGTTCAGACAGGAAAATCTCAAAGATGGATTGATGGACAATTACAAGAATGCACCGCAGTTTCTATATGCTCTTAATCCCTCGCAAATGGACATGTTCATAAATGCAGACAATCCTGTGCATCAGATGTCTGAGAGAGTTACAGAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGCTCATAGTGGGATGAGTAGTGTATCTAGCATGGATACTAATGCATCTTCAAGACACAGCATGAGTGTTAGTATGTACAGAGGAGGTAGGGGAACAGGAAGGCCTAGAAATGCTCCACCGGATTTGCCTTCTTTGCTCTTGGATTCTCGGATATGTTATCTTGGTATGCCGATTGTACCAGCCGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCTGTTTATTTATATATTAATTCGTCTGGGACTCAGAATGAGAAGAATGAGACCGTGGGATCAGAAACTGATGCTTATTCCATCGCTGATATGATTTCTTATATCAAATCTGATGTCTACACTGTGAATTTGGCCATGGCGTTTGGCCAAGCAGCAATGATTCTGTCTGTTGGAAAAAAGGGTTACCGTGCTGTACTGCCACATTCATCCACAAAAGTATTTCTCCCAAAAGTCCACAGATCAAGTGGTTCTGTTGCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATTCTGAGTATTACATTGAGCTGTTGGCAAAAGGAACAGGGAAGTCAAAGGAAGAAATTGCTAAAGACGTCCAGAGGACTAGATATTTCCAACCACAGGATGCCATAGAATACGGACTCGCTGACAAAATAATGTATTCAATGGATGGGGAAAGTGCATATGAGAAGCGGAATTATGATGAAATACGTGCTCAAAGAGCACTGCGGAGAGGTGGTGGGAACCCTCAAGCGGCTCCTTCAGGACTTTAG
Protein sequence

>Msa1442070

MSSSLSPSLSSPFIHDSSTTRHGTKLLPFPHATATRKPRCFKSFSFNCSLDRIPKQFRQENLKDGLMDNYKNAPQFLYALNPSQMDMFINADNPVHQMSERVTEESISSAKSYLAHSGMSSVSSMDTNASSRHSMSVSMYRGGRGTGRPRNAPPDLPSLLLDSRICYLGMPIVPAVTELILAQLMWLDYDNPAKPVYLYINSSGTQNEKNETVGSETDAYSIADMISYIKSDVYTVNLAMAFGQAAMILSVGKKGYRAVLPHSSTKVFLPKVHRSSGSVADMWIKAKELEANSEYYIELLAKGTGKSKEEIAKDVQRTRYFQPQDAIEYGLADKIMYSMDGESAYEKRNYDEIRAQRALRRGGGNPQAAPSGL*