AlfalfaGEDB | Msa1258730

M. sativa cultivar zhongmu-4 / Msa1258730

KEGG: K00940
GO: GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700
PFAM: PF00334.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258730	XP_003608884.1	94.845	194	8	1	1	194	1	192	3.36e-125	362

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258730	sp\|P47923\|NDK2_PEA	83.590	195	28	3	1	194	1	192	1.57e-108	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0049990	Msa1258730	0.803571	3.271041e-49	-8.615850e-47
Msa0092660	Msa1258730	0.825944	3.555229e-54	-8.615850e-47
Msa0092680	Msa1258730	0.815173	1.058522e-51	-8.615850e-47
Msa0092730	Msa1258730	0.837470	5.101841e-57	-8.615850e-47
Msa0094700	Msa1258730	0.809075	2.263360e-50	-8.615850e-47
Msa0105210	Msa1258730	0.804772	1.840299e-49	-8.615850e-47
Msa0112290	Msa1258730	0.813124	2.999554e-51	-8.615850e-47
Msa0115010	Msa1258730	0.801574	8.445763e-49	-8.615850e-47
Msa0137600	Msa1258730	0.836759	7.750356e-57	-8.615850e-47
Msa0173760	Msa1258730	0.802531	5.367857e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258730	MtrunA17_Chr4g0057901	94.845	194	8	1	1	194	1	192	3.09e-129	362
Msa1258730	MtrunA17_Chr8g0335791	69.091	110	34	0	85	194	3	112	5.33e-53	166
Msa1258730	MtrunA17_Chr8g0388131	58.036	112	47	0	83	194	83	194	1.39e-47	155
Msa1258730	MtrunA17_Chr8g0344421	27.826	115	80	1	83	194	32	146	5.19e-12	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258730	AT5G63310.1	65.574	183	60	2	13	194	13	193	1.26e-78	234
Msa1258730	AT4G09320.1	65.766	111	38	0	84	194	1	111	3.74e-52	164
Msa1258730	AT4G11010.1	49.020	153	71	2	49	194	46	198	1.34e-48	158
Msa1258730	AT4G23900.1	53.600	125	58	0	70	194	73	197	3.00e-45	150
Msa1258730	AT4G23895.3	57.143	112	48	0	83	194	316	427	5.19e-43	150
Msa1258730	AT1G17410.1	38.095	105	62	1	85	186	33	137	7.95e-16	72.4
Msa1258730	AT1G17410.2	39.000	100	58	1	90	186	1	100	1.19e-15	70.9
Msa1258730	AT1G17410.3	39.560	91	55	0	90	180	1	91	3.33e-15	69.3

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Find 58 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGATGGAGTGCAACG+TGG	0.739266	8_2:-59959198	Msa1258730:CDS
AAAGAGAGGAAGAAGAGAAA+TGG	0.478517	8_2:-59959571	Msa1258730:exon
AAATGCAGAAAGGTGTTGGG+TGG	0.739959	8_2:+59959446	None:intergenic
AAGAAGAGAAATGGAAGCCA+TGG	0.525144	8_2:-59959562	Msa1258730:exon
AAGAAGGGGTTTAAGTTAAT+TGG	0.185146	8_2:-59959036	Msa1258730:CDS
AAGACCACGTTGCACTCCAT+CGG	0.491405	8_2:+59959194	None:intergenic
AAGGAAAATGGCGGTATTGG+TGG	0.464284	8_2:+59959353	None:intergenic
AAGGAAATGCAGAAAGGTGT+TGG	0.497011	8_2:+59959442	None:intergenic
AAGTCTCCTCTTATTGTGCC+TGG	0.451702	8_2:+59957474	None:intergenic
AATCCTCTGCAAGCAGAACC+AGG	0.581765	8_2:-59957492	Msa1258730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTAGAAGGAAATGCAGAA+AGG	+	chr8_2:59957635-59957654	None:intergenic	30.0%
GAAAAAAGATGGGATTTAGA+AGG	+	chr8_2:59957648-59957667	None:intergenic	30.0%
AGTTGACCAAACTTACATTA+TGG	-	chr8_2:59957845-59957864	Msa1258730:intron	30.0%
GTTTCACCATAATGTAAGTT+TGG	+	chr8_2:59957854-59957873	None:intergenic	30.0%
ATTTGTAAAGGAGAATGACA+GGG	-	chr8_2:59958180-59958199	Msa1258730:intron	30.0%
ATAACAAGCTATACCTTAGA+GGG	+	chr8_2:59958443-59958462	None:intergenic	30.0%
AATAACAAGCTATACCTTAG+AGG	+	chr8_2:59958444-59958463	None:intergenic	30.0%
TCAATTGAAGAGGAACTAAA+TGG	-	chr8_2:59958572-59958591	Msa1258730:intron	30.0%
CAATTGAAGAGGAACTAAAT+GGG	-	chr8_2:59958573-59958592	Msa1258730:intron	30.0%
CTAAGATAGGTATAGGTATA+CGG	-	chr8_2:59958683-59958702	Msa1258730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	59957452	59959638	59957452	ID=Msa1258730;Name=Msa1258730
chr8_2	mRNA	59957452	59959638	59957452	ID=Msa1258730-mRNA-1;Parent=Msa1258730;Name=Msa1258730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=64\|1\|0.8\|1\|1\|1\|5\|0\|194
chr8_2	exon	59957452	59957568	59957452	ID=Msa1258730-mRNA-1:exon:18793;Parent=Msa1258730-mRNA-1
chr8_2	exon	59957656	59957736	59957656	ID=Msa1258730-mRNA-1:exon:18792;Parent=Msa1258730-mRNA-1
chr8_2	exon	59958999	59959085	59958999	ID=Msa1258730-mRNA-1:exon:18791;Parent=Msa1258730-mRNA-1
chr8_2	exon	59959194	59959250	59959194	ID=Msa1258730-mRNA-1:exon:18790;Parent=Msa1258730-mRNA-1
chr8_2	exon	59959332	59959638	59959332	ID=Msa1258730-mRNA-1:exon:18789;Parent=Msa1258730-mRNA-1
chr8_2	five_prime_UTR	59959575	59959638	59959575	ID=Msa1258730-mRNA-1:five_prime_utr;Parent=Msa1258730-mRNA-1
chr8_2	CDS	59959332	59959574	59959332	ID=Msa1258730-mRNA-1:cds;Parent=Msa1258730-mRNA-1
chr8_2	CDS	59959194	59959250	59959194	ID=Msa1258730-mRNA-1:cds;Parent=Msa1258730-mRNA-1
chr8_2	CDS	59958999	59959085	59958999	ID=Msa1258730-mRNA-1:cds;Parent=Msa1258730-mRNA-1
chr8_2	CDS	59957656	59957736	59957656	ID=Msa1258730-mRNA-1:cds;Parent=Msa1258730-mRNA-1
chr8_2	CDS	59957452	59957568	59957452	ID=Msa1258730-mRNA-1:cds;Parent=Msa1258730-mRNA-1

Gene Sequence

>Msa1258730

ATGGAAGCCATGGGCGTGTTTTGCGGAAGCAATAGTATCTATGTCACATCCTCTCTCCTACGCAACACAAACTCAAACACAAACACAAGAAGCTCTCAATTACGCACCACCCAACACCTTTCTGCATTTCCTTCTAAATCCCATCTTTTTTCATCTTCTACTTCTTCTTCCTATGCCAAAACCATCCGCACTAAAAGCTCCACCAATACCGCCATTTTCCTTCCCCACTTAATTGCTTCTCTCGAACAAGTTGACCAAACTTACATTATGGTGAAACCCGATGGAGTGCAACGTGGTCTTGTGGGTGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAATTGGCTTGAAGCTCTTTCAATGCTCTAAAGAATTAGCTGAGGAGCATTACAAGGACCTAAATCAGAAGTCTTTCTTCCCTAAGCTGATTGACTATATTACTTCGGGCCCCGTTGTGTCTATGGCTTGGGAGGGTGTTGGAGTAGTGCCATCAGCACGTAAGCTTATAGGAGCAACAAATCCTCTGCAAGCAGAACCAGGCACAATAAGAGGAGACTTTGCTGTTGAAACAGGAAGGTAA

Protein sequence

>Msa1258730

MEAMGVFCGSNSIYVTSSLLRNTNSNTNTRSSQLRTTQHLSAFPSKSHLFSSSTSSSYAKTIRTKSSTNTAIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLIGLKLFQCSKELAEEHYKDLNQKSFFPKLIDYITSGPVVSMAWEGVGVVPSARKLIGATNPLQAEPGTIRGDFAVETGR*