AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406880 MtrunA17_Chr2g0323531 97.569 288 6 1 1 288 1 287 0.0 575
Msa1406880 MtrunA17_Chr4g0022631 75.610 287 67 3 1 284 1 287 4.32e-154 432
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406880 AT2G20890.1 67.260 281 84 4 3 282 5 278 6.55e-131 374

Find 96 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCGACATCAATTTA+TGG 0.149475 tig0023247:-44495 Msa1406880:three_prime_UTR
TGGCAATTCTGCTTCTAAAA+TGG 0.248095 tig0023247:-47460 Msa1406880:CDS
CCAACTCAAGAAGGCGAAAA+AGG 0.290072 tig0023247:+45759 None:intergenic
ATTACACGGCCTTATGTATC+AGG 0.295054 tig0023247:-44383 Msa1406880:three_prime_UTR
AATTTACTATCATCAGTTAT+TGG 0.300905 tig0023247:-44468 Msa1406880:three_prime_UTR
GTACTTTCAGTTTCTAGTTA+TGG 0.302790 tig0023247:-47628 Msa1406880:exon
GAGTAAATAACTTTATATTT+CGG 0.316353 tig0023247:-44526 Msa1406880:three_prime_UTR
CCCTTCAACTTCTCCTTCTC+TGG 0.328222 tig0023247:+45853 None:intergenic
GACTCAGAAAATATCCTTCA+TGG 0.330991 tig0023247:+47682 None:intergenic
GAGCCACAGAAGGCTAATAA+TGG 0.333096 tig0023247:-44849 Msa1406880:CDS
GTTCTGATATGTTTGGAATT+CGG 0.343615 tig0023247:-47518 Msa1406880:CDS
TCATGAAACCTGTATTGTTC+TGG 0.346032 tig0023247:+46384 None:intergenic
TACATAAGGCCGTGTAATAA+AGG 0.351531 tig0023247:+44388 None:intergenic
TACTCAGAATGTATGCCTTT+AGG 0.361473 tig0023247:+44544 None:intergenic
TATGATTCTGTATTTGCTCT+TGG 0.366606 tig0023247:-46504 Msa1406880:CDS
GCTTCAAGTTCTGATATGTT+TGG 0.372546 tig0023247:-47525 Msa1406880:CDS
GCTACCTTGTCTAAAATTGT+TGG 0.381994 tig0023247:+45722 None:intergenic
TGCAAAGAAGTTGGAAGATT+GGG 0.391763 tig0023247:-45915 Msa1406880:CDS
TTGGTCGTTTATATGCCTTT+AGG 0.392956 tig0023247:+46604 None:intergenic
CCTTCTATTATAAAGTTGTA+TGG 0.402693 tig0023247:-44420 Msa1406880:three_prime_UTR
CTCTTTAGCTTGAACCAGCT+TGG 0.406680 tig0023247:+45385 None:intergenic
AGCATATATTAATGCATTGA+AGG 0.411154 tig0023247:-46412 Msa1406880:CDS
GAAGAAGAAAAGAGAAGAAA+GGG 0.415256 tig0023247:-44874 Msa1406880:CDS
AGAAGAAGAAAAGAGAAGAA+AGG 0.421659 tig0023247:-44875 Msa1406880:CDS
TGCTTTCAAAACATTTGTGT+TGG 0.423270 tig0023247:+47739 None:intergenic
CAATGCATGTCTTCTGTCAC+AGG 0.424463 tig0023247:-47432 Msa1406880:intron
CCATACAACTTTATAATAGA+AGG 0.425241 tig0023247:+44420 None:intergenic
AGCCACAGAAGGCTAATAAT+GGG 0.431472 tig0023247:-44848 Msa1406880:CDS
AGGAAGATCCAGAACAATAC+AGG 0.432189 tig0023247:-46392 Msa1406880:intron
GAGCAAATACAGAATCATAT+TGG 0.436295 tig0023247:+46508 None:intergenic
ATGCAAAGAAGTTGGAAGAT+TGG 0.439138 tig0023247:-45916 Msa1406880:CDS
CGACAAAAGAAGCGTTGATC+GGG 0.440456 tig0023247:-45435 Msa1406880:CDS
TCGTATGCTGCTTTCCAAGC+TGG 0.444672 tig0023247:-45399 Msa1406880:CDS
ATGATTTCTCATACTGTACT+TGG 0.446409 tig0023247:-44692 Msa1406880:three_prime_UTR
CAGAGTAGATGCAAAGAAGT+TGG 0.448896 tig0023247:-45924 Msa1406880:CDS
CAACTCAGTGGATTAAGAAA+AGG 0.464136 tig0023247:+44732 None:intergenic
AAGAAGCGTTGATCGGGACT+TGG 0.466265 tig0023247:-45429 Msa1406880:CDS
TTTCCCCGCTCAATTTGTAA+TGG 0.470303 tig0023247:+44824 None:intergenic
TTTGTCCTTCCTTTCCATGA+AGG 0.471047 tig0023247:-47696 Msa1406880:five_prime_UTR
TTGTAATTATTGTAAACCTA+TGG 0.471724 tig0023247:+44284 None:intergenic
TTTATGGCTTGTGAGTTCAA+TGG 0.472460 tig0023247:-44230 Msa1406880:three_prime_UTR
TTGTTATAGATACTAGGAAT+TGG 0.474724 tig0023247:+46585 None:intergenic
TATCTATAACAATGTGCTGC+AGG 0.485681 tig0023247:-46574 Msa1406880:CDS
GAAGAAAAGAGAAGAAAGGG+TGG 0.490264 tig0023247:-44871 Msa1406880:CDS
CTATGGCAATAACTCACACT+TGG 0.495906 tig0023247:+44301 None:intergenic
CAAGTGTGAGTTATTGCCAT+AGG 0.498366 tig0023247:-44300 Msa1406880:three_prime_UTR
GGCTCAAAACTCAACTTCAC+TGG 0.505541 tig0023247:-45888 Msa1406880:CDS
ATTAATATATGCTTTGAAGA+TGG 0.505650 tig0023247:+46422 None:intergenic
TAGGAAATTTAGCTTTGTCT+CGG 0.507415 tig0023247:+46623 None:intergenic
TAGCTTTGTCTCGGAAACGC+TGG 0.510906 tig0023247:+46632 None:intergenic
CACTGTCTATGATAAACTCA+TGG 0.515316 tig0023247:-46475 Msa1406880:CDS
TCGACAAAAGAAGCGTTGAT+CGG 0.519628 tig0023247:-45436 Msa1406880:CDS
AGAAAATATCCTTCATGGAA+AGG 0.520550 tig0023247:+47687 None:intergenic
AGCTTTGTCTCGGAAACGCT+GGG 0.521270 tig0023247:+46633 None:intergenic
TTGCATTTGCCAACTCAAGA+AGG 0.522030 tig0023247:+45750 None:intergenic
CATTGTGTTGGTGTTAGAGT+TGG 0.522081 tig0023247:-47480 Msa1406880:CDS
AATATCCTTCATGGAAAGGA+AGG 0.522272 tig0023247:+47691 None:intergenic
GACAAAGCTAAATTTCCTAA+AGG 0.527158 tig0023247:-46619 Msa1406880:CDS
TGCAAAGGGAATTTATTGAC+AGG 0.527306 tig0023247:-45361 Msa1406880:intron
GGGGCCATTACAAATTGAGC+GGG 0.528047 tig0023247:-44828 Msa1406880:exon
GGAAGGACAAATTTCAGAGA+TGG 0.534270 tig0023247:+47708 None:intergenic
TCCAGAGAAGGAGAAGTTGA+AGG 0.535017 tig0023247:-45854 Msa1406880:CDS
GTCTATGATAAACTCATGGA+AGG 0.537912 tig0023247:-46471 Msa1406880:CDS
GAATGAAGACCTGATACATA+AGG 0.540387 tig0023247:+44374 None:intergenic
TTCAAGCTAAAGAGCTGCAA+AGG 0.544489 tig0023247:-45376 Msa1406880:CDS
TATGGCAATAACTCACACTT+GGG 0.551950 tig0023247:+44302 None:intergenic
GCCCCATTATTAGCCTTCTG+TGG 0.553177 tig0023247:+44846 None:intergenic
CCAGAGAAGGAGAAGTTGAA+GGG 0.554923 tig0023247:-45853 Msa1406880:CDS
AAAATAAATTTGTGACTGCA+AGG 0.563842 tig0023247:+44589 None:intergenic
TCATCTATTCCTTTATTACA+CGG 0.567946 tig0023247:-44397 Msa1406880:three_prime_UTR
AGAAAGGGTGGAGCCACAGA+AGG 0.570202 tig0023247:-44859 Msa1406880:CDS
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 tig0023247:-45782 Msa1406880:CDS
TGAGAAGGGTGAACAAATTG+TGG 0.579520 tig0023247:+44640 None:intergenic
TCAAGCTAAAGAGCTGCAAA+GGG 0.583103 tig0023247:-45375 Msa1406880:CDS
TACATGCAAATTGTGTGAGA+AGG 0.585306 tig0023247:+44625 None:intergenic
GATTCCTCGTACCATTGTGT+TGG 0.585869 tig0023247:-47492 Msa1406880:CDS
GATTAAGAAAAGGCGTGTCA+AGG 0.595646 tig0023247:+44742 None:intergenic
ACTGTACTTGGTTTACATTG+TGG 0.597011 tig0023247:-44680 Msa1406880:three_prime_UTR
GAAGTTGGAAGATTGGGCTA+AGG 0.605561 tig0023247:-45909 Msa1406880:CDS
AGCACATTGTTATAGATACT+AGG 0.605595 tig0023247:+46579 None:intergenic
CAGAGAAGGAGAAGTTGAAG+GGG 0.608753 tig0023247:-45852 Msa1406880:CDS
ACATGCAAATTGTGTGAGAA+GGG 0.611893 tig0023247:+44626 None:intergenic
TGATCTTAATATGCACATTG+TGG 0.621344 tig0023247:+44344 None:intergenic
GGAAGGGTATTCTAGTGAAG+AGG 0.630073 tig0023247:-46454 Msa1406880:CDS
TTCTTGCTTATCCAACTCAG+TGG 0.633736 tig0023247:+44720 None:intergenic
ACATATCAGAACTTGAAGCA+AGG 0.636756 tig0023247:+47529 None:intergenic
AAGGATAAGAAATCTTCACT+TGG 0.639221 tig0023247:+44761 None:intergenic
GTCAACATAACAGCTTTGTG+CGG 0.651736 tig0023247:-45468 Msa1406880:intron
TTAATATGCACATTGTGGCA+TGG 0.655770 tig0023247:+44349 None:intergenic
TGGGGCCATTACAAATTGAG+CGG 0.656354 tig0023247:-44829 Msa1406880:exon
CAACTCTAACACCAACACAA+TGG 0.660091 tig0023247:+47481 None:intergenic
TCTATGATAAACTCATGGAA+GGG 0.662278 tig0023247:-46470 Msa1406880:CDS
GCCACAGAAGGCTAATAATG+GGG 0.663091 tig0023247:-44847 Msa1406880:CDS
AACACCAACACAATGGTACG+AGG 0.686845 tig0023247:+47488 None:intergenic
ATGGCAATAACTCACACTTG+GGG 0.708516 tig0023247:+44303 None:intergenic
GGGCCATTACAAATTGAGCG+GGG 0.720112 tig0023247:-44827 Msa1406880:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAATAATAATTAATGA+CGG - tig0023247:45700-45719 Msa1406880:intron 10.0%
!! GAGTAAATAACTTTATATTT+CGG - tig0023247:47446-47465 Msa1406880:CDS 15.0%
!! AAAGTATAACGATGAAAAAA+AGG + tig0023247:44209-44228 None:intergenic 20.0%
!!! ATATGTTTTGGTTATTTTAG+TGG - tig0023247:44773-44792 Msa1406880:three_prime_UTR 20.0%
!!! ATTAATATATGCTTTGAAGA+TGG + tig0023247:45553-45572 None:intergenic 20.0%
!! AATAAAGAACAATAAAGCAA+AGG + tig0023247:45626-45645 None:intergenic 20.0%
!!! TTTTTCAATTATTGAGTCAA+AGG + tig0023247:45674-45693 None:intergenic 20.0%
!! GATTTATGATAGTTAATCTT+TGG - tig0023247:46480-46499 Msa1406880:CDS 20.0%
!! AATTTACTATCATCAGTTAT+TGG - tig0023247:47504-47523 Msa1406880:CDS 20.0%
!! TTGTAATTATTGTAAACCTA+TGG + tig0023247:47691-47710 None:intergenic 20.0%
!!! TATCTAAGAACACTATTTTA+TGG - tig0023247:47726-47745 Msa1406880:five_prime_UTR 20.0%
!!! CATAAAATTTTCAAATTCAG+TGG + tig0023247:47776-47795 None:intergenic 20.0%
!!! CACTGAATTTGAAAATTTTA+TGG - tig0023247:47774-47793 Msa1406880:five_prime_UTR 20.0%
! TTGACAAAAACATGGAAAAA+CGG - tig0023247:44954-44973 Msa1406880:intron 25.0%
! TCTCAGTTCAACAAAAATAA+GGG + tig0023247:45016-45035 None:intergenic 25.0%
! ATCTCAGTTCAACAAAAATA+AGG + tig0023247:45017-45036 None:intergenic 25.0%
! TTGTTATAGATACTAGGAAT+TGG + tig0023247:45390-45409 None:intergenic 25.0%
! AGCATATATTAATGCATTGA+AGG - tig0023247:45560-45579 Msa1406880:intron 25.0%
!! TATGATGCTAACTTAGATTT+TGG + tig0023247:45898-45917 None:intergenic 25.0%
!! CAATAGTTTTCTATTCTTTC+CGG + tig0023247:45931-45950 None:intergenic 25.0%
!!! TAAGTGTGTGTTTGATTTTA+CGG - tig0023247:46743-46762 Msa1406880:intron 25.0%
! ATAGCATACTCAGATTTATA+GGG + tig0023247:46923-46942 None:intergenic 25.0%
! AATAGCATACTCAGATTTAT+AGG + tig0023247:46924-46943 None:intergenic 25.0%
!!! ATTAGACTTTAACTTGTGAA+AGG + tig0023247:46942-46961 None:intergenic 25.0%
!!! TATATGTTTTTTTTTACCCC+AGG - tig0023247:47073-47092 Msa1406880:intron 25.0%
!!! ATATGTTTTTTTTTACCCCA+GGG - tig0023247:47074-47093 Msa1406880:intron 25.0%
! AAAATAAATTTGTGACTGCA+AGG + tig0023247:47386-47405 None:intergenic 25.0%
! TTCAATTCGACATCAATTTA+TGG - tig0023247:47477-47496 Msa1406880:CDS 25.0%
! CCATACAACTTTATAATAGA+AGG + tig0023247:47555-47574 None:intergenic 25.0%
! CCTTCTATTATAAAGTTGTA+TGG - tig0023247:47552-47571 Msa1406880:CDS 25.0%
! TCATCTATTCCTTTATTACA+CGG - tig0023247:47575-47594 Msa1406880:CDS 25.0%
TGCTTTCAAAACATTTGTGT+TGG + tig0023247:44236-44255 None:intergenic 30.0%
AGAAAATATCCTTCATGGAA+AGG + tig0023247:44288-44307 None:intergenic 30.0%
!! GTACTTTCAGTTTCTAGTTA+TGG - tig0023247:44344-44363 Msa1406880:three_prime_UTR 30.0%
! GTTCTGATATGTTTGGAATT+CGG - tig0023247:44454-44473 Msa1406880:three_prime_UTR 30.0%
! GGTTTGTGCTTTTGTTAATT+TGG - tig0023247:44561-44580 Msa1406880:three_prime_UTR 30.0%
!!! TCCAAACCAAGTTTTAGATA+AGG - tig0023247:44585-44604 Msa1406880:three_prime_UTR 30.0%
!!! CCAAACCAAGTTTTAGATAA+GGG - tig0023247:44586-44605 Msa1406880:three_prime_UTR 30.0%
!! ATCCTTTTTGGCATATGTTT+TGG - tig0023247:44761-44780 Msa1406880:three_prime_UTR 30.0%
AACCAAAACATATGCCAAAA+AGG + tig0023247:44766-44785 None:intergenic 30.0%
CTATTGTTGATCACATTGAT+AGG - tig0023247:44802-44821 Msa1406880:three_prime_UTR 30.0%
TTTGAGCAGTTTATAAAGAC+TGG + tig0023247:44842-44861 None:intergenic 30.0%
TAAACTGCTCAAAACTCTAA+TGG - tig0023247:44849-44868 Msa1406880:CDS 30.0%
AAAACTCTAATGGCAATAGA+CGG - tig0023247:44859-44878 Msa1406880:CDS 30.0%
AAGTCACTATCTTAGTTGTA+AGG + tig0023247:44921-44940 None:intergenic 30.0%
ATCGTTGGAAATTTCAATGA+TGG + tig0023247:45105-45124 None:intergenic 30.0%
! CATATGTTTTGCAAACTCTA+TGG + tig0023247:45172-45191 None:intergenic 30.0%
TTTAACACCTACTGCAAAAA+AGG - tig0023247:45239-45258 Msa1406880:intron 30.0%
TGAACCTTATTATCGTTAGT+TGG - tig0023247:45288-45307 Msa1406880:intron 30.0%
ATGACCAACTAACGATAATA+AGG + tig0023247:45295-45314 None:intergenic 30.0%
TTATTATCGTTAGTTGGTCA+TGG - tig0023247:45294-45313 Msa1406880:intron 30.0%
TATTATCGTTAGTTGGTCAT+GGG - tig0023247:45295-45314 Msa1406880:intron 30.0%
!! TAGGAAATTTAGCTTTGTCT+CGG + tig0023247:45352-45371 None:intergenic 30.0%
GACAAAGCTAAATTTCCTAA+AGG - tig0023247:45353-45372 Msa1406880:intron 30.0%
AGCACATTGTTATAGATACT+AGG + tig0023247:45396-45415 None:intergenic 30.0%
GAGCAAATACAGAATCATAT+TGG + tig0023247:45467-45486 None:intergenic 30.0%
TATGATTCTGTATTTGCTCT+TGG - tig0023247:45468-45487 Msa1406880:intron 30.0%
TCTATGATAAACTCATGGAA+GGG - tig0023247:45502-45521 Msa1406880:intron 30.0%
! TTTTGCTTAGTACTATCTGA+AGG - tig0023247:45969-45988 Msa1406880:intron 30.0%
! AGAACCAACAATTTTAGACA+AGG - tig0023247:46246-46265 Msa1406880:intron 30.0%
ATCACTTCAAACTGCTTTAT+TGG + tig0023247:46363-46382 None:intergenic 30.0%
! AGCAGTTTGAAGTGATTAAA+TGG - tig0023247:46367-46386 Msa1406880:intron 30.0%
TTACCCTTGAATTTGTGAAT+TGG - tig0023247:46853-46872 Msa1406880:intron 30.0%
AGTCCAATTCACAAATTCAA+GGG + tig0023247:46859-46878 None:intergenic 30.0%
TAGTCCAATTCACAAATTCA+AGG + tig0023247:46860-46879 None:intergenic 30.0%
ACTCAGATTTATAGAGTAGA+TGG + tig0023247:46967-46986 None:intergenic 30.0%
GATTTACAATTACAGCTTGA+TGG - tig0023247:47023-47042 Msa1406880:intron 30.0%
AGAAGAAGAAAAGAGAAGAA+AGG - tig0023247:47097-47116 Msa1406880:intron 30.0%
GAAGAAGAAAAGAGAAGAAA+GGG - tig0023247:47098-47117 Msa1406880:intron 30.0%
AAGGATAAGAAATCTTCACT+TGG + tig0023247:47214-47233 None:intergenic 30.0%
ATGATTTCTCATACTGTACT+TGG - tig0023247:47280-47299 Msa1406880:intron 30.0%
! AAGGAGAAAAATGAAAGTGT+TGG + tig0023247:47536-47555 None:intergenic 30.0%
TGATCTTAATATGCACATTG+TGG + tig0023247:47631-47650 None:intergenic 30.0%
AATATCCTTCATGGAAAGGA+AGG + tig0023247:44284-44303 None:intergenic 35.0%
GACTCAGAAAATATCCTTCA+TGG + tig0023247:44293-44312 None:intergenic 35.0%
ACATATCAGAACTTGAAGCA+AGG + tig0023247:44446-44465 None:intergenic 35.0%
! GCTTCAAGTTCTGATATGTT+TGG - tig0023247:44447-44466 Msa1406880:three_prime_UTR 35.0%
! TGGCAATTCTGCTTCTAAAA+TGG - tig0023247:44512-44531 Msa1406880:three_prime_UTR 35.0%
! CCCTTATCTAAAACTTGGTT+TGG + tig0023247:44589-44608 None:intergenic 35.0%
!!! AACCAAGTTTTAGATAAGGG+AGG - tig0023247:44589-44608 Msa1406880:three_prime_UTR 35.0%
AGTTAGTTGCATGCATGATT+AGG - tig0023247:44697-44716 Msa1406880:three_prime_UTR 35.0%
! TCTTATGCACCGTAATCTTT+TGG - tig0023247:44736-44755 Msa1406880:three_prime_UTR 35.0%
! CTTATGCACCGTAATCTTTT+GGG - tig0023247:44737-44756 Msa1406880:three_prime_UTR 35.0%
! TTATGCACCGTAATCTTTTG+GGG - tig0023247:44738-44757 Msa1406880:three_prime_UTR 35.0%
AAAGGATCCCCAAAAGATTA+CGG + tig0023247:44748-44767 None:intergenic 35.0%
!! AATCTTTTGGGGATCCTTTT+TGG - tig0023247:44749-44768 Msa1406880:three_prime_UTR 35.0%
TTGTTGATCACATTGATAGG+TGG - tig0023247:44805-44824 Msa1406880:three_prime_UTR 35.0%
TCTTAGTTGTAAGGACAAGA+AGG + tig0023247:44912-44931 None:intergenic 35.0%
!!! AACTCTATGGTGGACTATTT+TGG + tig0023247:45159-45178 None:intergenic 35.0%
! ATGTTTTGCAAACTCTATGG+TGG + tig0023247:45169-45188 None:intergenic 35.0%
!!! TAGTCTTCCTTTTTTGCAGT+AGG + tig0023247:45249-45268 None:intergenic 35.0%
TTGGTCGTTTATATGCCTTT+AGG + tig0023247:45371-45390 None:intergenic 35.0%
TATCTATAACAATGTGCTGC+AGG - tig0023247:45398-45417 Msa1406880:CDS 35.0%
CACTGTCTATGATAAACTCA+TGG - tig0023247:45497-45516 Msa1406880:intron 35.0%
GTCTATGATAAACTCATGGA+AGG - tig0023247:45501-45520 Msa1406880:intron 35.0%
TCATGAAACCTGTATTGTTC+TGG + tig0023247:45591-45610 None:intergenic 35.0%
!! AGATTTTGGCAAACAAACTC+TGG + tig0023247:45884-45903 None:intergenic 35.0%
AGCATCATATTATTCCCAAC+CGG - tig0023247:45909-45928 Msa1406880:CDS 35.0%
! GTTTTCTATTCTTTCCGGTT+GGG + tig0023247:45926-45945 None:intergenic 35.0%
! AGTTTTCTATTCTTTCCGGT+TGG + tig0023247:45927-45946 None:intergenic 35.0%
ATGCAAAGAAGTTGGAAGAT+TGG - tig0023247:46056-46075 Msa1406880:intron 35.0%
TGCAAAGAAGTTGGAAGATT+GGG - tig0023247:46057-46076 Msa1406880:intron 35.0%
!! AGAAGTTGAAGGGGTTTTAA+AGG - tig0023247:46129-46148 Msa1406880:intron 35.0%
AAGGATATTGCAAAAAGAGC+AGG - tig0023247:46148-46167 Msa1406880:intron 35.0%
TATAGTCGTTTCTTTGCAGT+AGG - tig0023247:46190-46209 Msa1406880:intron 35.0%
! GCTACCTTGTCTAAAATTGT+TGG + tig0023247:46253-46272 None:intergenic 35.0%
CATGATGCCTTGAATGAATT+GGG + tig0023247:46275-46294 None:intergenic 35.0%
! GCTTTATTGGAACTTCTTAG+AGG + tig0023247:46350-46369 None:intergenic 35.0%
TTGTAGGAGGAAAACATATC+AGG + tig0023247:46399-46418 None:intergenic 35.0%
TGCAAAGGGAATTTATTGAC+AGG - tig0023247:46611-46630 Msa1406880:CDS 35.0%
ACTCAGATTTATAGGGTAGA+TGG + tig0023247:46916-46935 None:intergenic 35.0%
!! CAACTCAGTGGATTAAGAAA+AGG + tig0023247:47243-47262 None:intergenic 35.0%
! CTTTTCTTAATCCACTGAGT+TGG - tig0023247:47241-47260 Msa1406880:intron 35.0%
ACTGTACTTGGTTTACATTG+TGG - tig0023247:47292-47311 Msa1406880:intron 35.0%
ACATGCAAATTGTGTGAGAA+GGG + tig0023247:47349-47368 None:intergenic 35.0%
TACATGCAAATTGTGTGAGA+AGG + tig0023247:47350-47369 None:intergenic 35.0%
CTAAAAACAAGCAAGCCTAA+AGG - tig0023247:47413-47432 Msa1406880:intron 35.0%
TACTCAGAATGTATGCCTTT+AGG + tig0023247:47431-47450 None:intergenic 35.0%
TACATAAGGCCGTGTAATAA+AGG + tig0023247:47587-47606 None:intergenic 35.0%
GAATGAAGACCTGATACATA+AGG + tig0023247:47601-47620 None:intergenic 35.0%
TTAATATGCACATTGTGGCA+TGG + tig0023247:47626-47645 None:intergenic 35.0%
TATGGCAATAACTCACACTT+GGG + tig0023247:47673-47692 None:intergenic 35.0%
! TTTATGGCTTGTGAGTTCAA+TGG - tig0023247:47742-47761 Msa1406880:five_prime_UTR 35.0%
GGAAGGACAAATTTCAGAGA+TGG + tig0023247:44267-44286 None:intergenic 40.0%
TTTGTCCTTCCTTTCCATGA+AGG - tig0023247:44276-44295 Msa1406880:three_prime_UTR 40.0%
CAACTCTAACACCAACACAA+TGG + tig0023247:44494-44513 None:intergenic 40.0%
!! CATTGTGTTGGTGTTAGAGT+TGG - tig0023247:44492-44511 Msa1406880:three_prime_UTR 40.0%
! CACCTCCCTTATCTAAAACT+TGG + tig0023247:44594-44613 None:intergenic 40.0%
CATTGATAGGTGGTTCAAGA+TGG - tig0023247:44815-44834 Msa1406880:exon 40.0%
GATAGTGACTTGATCAGTGT+CGG - tig0023247:44930-44949 Msa1406880:intron 40.0%
!! GTGTCGGTTTGACAAAAACA+TGG - tig0023247:44946-44965 Msa1406880:intron 40.0%
AAGTCATTGTCTGAGTGACA+AGG - tig0023247:45042-45061 Msa1406880:intron 40.0%
GACTGGTACTTGAAAATCGT+TGG + tig0023247:45120-45139 None:intergenic 40.0%
!!! CTATGGTGGACTATTTTGGT+AGG + tig0023247:45155-45174 None:intergenic 40.0%
ATATGCATGAGTGTACGAGA+TGG - tig0023247:45187-45206 Msa1406880:intron 40.0%
AGGAAGATCCAGAACAATAC+AGG - tig0023247:45580-45599 Msa1406880:intron 40.0%
AACAAACTCTGGATTGTGTG+CGG + tig0023247:45873-45892 None:intergenic 40.0%
CTTTGCATCTACTCTGTAGA+GGG + tig0023247:46044-46063 None:intergenic 40.0%
TCTTTGCATCTACTCTGTAG+AGG + tig0023247:46045-46064 None:intergenic 40.0%
CAGAGTAGATGCAAAGAAGT+TGG - tig0023247:46048-46067 Msa1406880:intron 40.0%
! GTTGAGTTTTCATCCAGAGA+AGG - tig0023247:46106-46125 Msa1406880:intron 40.0%
TGCAAAAAGAGCAGGAGAAA+AGG - tig0023247:46156-46175 Msa1406880:intron 40.0%
GCAAAAAGAGCAGGAGAAAA+GGG - tig0023247:46157-46176 Msa1406880:intron 40.0%
TTGCATTTGCCAACTCAAGA+AGG + tig0023247:46225-46244 None:intergenic 40.0%
AAGGTAGCCCAATTCATTCA+AGG - tig0023247:46265-46284 Msa1406880:intron 40.0%
GCATGATGCCTTGAATGAAT+TGG + tig0023247:46276-46295 None:intergenic 40.0%
! TTCATTCAAGGCATCATGCA+TGG - tig0023247:46277-46296 Msa1406880:intron 40.0%
TTGCTACTGAGAGCAATTGT+AGG + tig0023247:46415-46434 None:intergenic 40.0%
GCATCGTTATGAATGTTCGT+AGG - tig0023247:46458-46477 Msa1406880:CDS 40.0%
! GTCAACATAACAGCTTTGTG+CGG - tig0023247:46504-46523 Msa1406880:CDS 40.0%
!! TCGACAAAAGAAGCGTTGAT+CGG - tig0023247:46536-46555 Msa1406880:CDS 40.0%
TTCAAGCTAAAGAGCTGCAA+AGG - tig0023247:46596-46615 Msa1406880:CDS 40.0%
TCAAGCTAAAGAGCTGCAAA+GGG - tig0023247:46597-46616 Msa1406880:CDS 40.0%
! TCTCTTTTCTTCTTCTCCCT+GGG + tig0023247:47093-47112 None:intergenic 40.0%
! TTCTCTTTTCTTCTTCTCCC+TGG + tig0023247:47094-47113 None:intergenic 40.0%
GAAGAAAAGAGAAGAAAGGG+TGG - tig0023247:47101-47120 Msa1406880:intron 40.0%
AGCCACAGAAGGCTAATAAT+GGG - tig0023247:47124-47143 Msa1406880:intron 40.0%
TTTCCCCGCTCAATTTGTAA+TGG + tig0023247:47151-47170 None:intergenic 40.0%
! GATTAAGAAAAGGCGTGTCA+AGG + tig0023247:47233-47252 None:intergenic 40.0%
TTCTTGCTTATCCAACTCAG+TGG + tig0023247:47255-47274 None:intergenic 40.0%
TGAGAAGGGTGAACAAATTG+TGG + tig0023247:47335-47354 None:intergenic 40.0%
! ATTACACGGCCTTATGTATC+AGG - tig0023247:47589-47608 Msa1406880:CDS 40.0%
ATGGCAATAACTCACACTTG+GGG + tig0023247:47672-47691 None:intergenic 40.0%
CTATGGCAATAACTCACACT+TGG + tig0023247:47674-47693 None:intergenic 40.0%
CAAGTGTGAGTTATTGCCAT+AGG - tig0023247:47672-47691 Msa1406880:five_prime_UTR 40.0%
GATTCCTCGTACCATTGTGT+TGG - tig0023247:44480-44499 Msa1406880:three_prime_UTR 45.0%
AACACCAACACAATGGTACG+AGG + tig0023247:44487-44506 None:intergenic 45.0%
CAATGCATGTCTTCTGTCAC+AGG - tig0023247:44540-44559 Msa1406880:three_prime_UTR 45.0%
TTGTAAGGACAAGAAGGACC+GGG + tig0023247:44906-44925 None:intergenic 45.0%
GTTGTAAGGACAAGAAGGAC+CGG + tig0023247:44907-44926 None:intergenic 45.0%
TCATTGTCTGAGTGACAAGG+TGG - tig0023247:45045-45064 Msa1406880:intron 45.0%
! TTTTGGTAGGTGGTCTACAG+TGG + tig0023247:45142-45161 None:intergenic 45.0%
!!! TGGTGGACTATTTTGGTAGG+TGG + tig0023247:45152-45171 None:intergenic 45.0%
!! GGAAGGGTATTCTAGTGAAG+AGG - tig0023247:45518-45537 Msa1406880:intron 45.0%
ACTATGTCCAGCAGAGGTTT+GGG - tig0023247:45743-45762 Msa1406880:CDS 45.0%
GGCTGATTGCATGGAATCAA+GGG + tig0023247:45785-45804 None:intergenic 45.0%
TGGCTGATTGCATGGAATCA+AGG + tig0023247:45786-45805 None:intergenic 45.0%
TTGATCAGATGGCCTAGAAG+TGG + tig0023247:45806-45825 None:intergenic 45.0%
TTGTTGCGGTCTTGATCAGA+TGG + tig0023247:45817-45836 None:intergenic 45.0%
GAAGTTGGAAGATTGGGCTA+AGG - tig0023247:46063-46082 Msa1406880:intron 45.0%
GGCTCAAAACTCAACTTCAC+TGG - tig0023247:46084-46103 Msa1406880:intron 45.0%
TCCAGAGAAGGAGAAGTTGA+AGG - tig0023247:46118-46137 Msa1406880:intron 45.0%
CCAGAGAAGGAGAAGTTGAA+GGG - tig0023247:46119-46138 Msa1406880:intron 45.0%
CAGAGAAGGAGAAGTTGAAG+GGG - tig0023247:46120-46139 Msa1406880:intron 45.0%
CCAACTCAAGAAGGCGAAAA+AGG + tig0023247:46216-46235 None:intergenic 45.0%
!! CCTTTTTCGCCTTCTTGAGT+TGG - tig0023247:46213-46232 Msa1406880:intron 45.0%
CTACTGAGAGCAATTGTAGG+AGG + tig0023247:46412-46431 None:intergenic 45.0%
!! CGACAAAAGAAGCGTTGATC+GGG - tig0023247:46537-46556 Msa1406880:CDS 45.0%
!! CTCTTTAGCTTGAACCAGCT+TGG + tig0023247:46590-46609 None:intergenic 45.0%
CAGAGAGGAGAACAACTGAA+GGG + tig0023247:46658-46677 None:intergenic 45.0%
ACAGAGAGGAGAACAACTGA+AGG + tig0023247:46659-46678 None:intergenic 45.0%
TGTTCTCCTCTCTGTCATCA+TGG - tig0023247:46664-46683 Msa1406880:intron 45.0%
GAAAAGCCATGATGACAGAG+AGG + tig0023247:46673-46692 None:intergenic 45.0%
! CTCTTTTCTTCTTCTCCCTG+GGG + tig0023247:47092-47111 None:intergenic 45.0%
GAGCCACAGAAGGCTAATAA+TGG - tig0023247:47123-47142 Msa1406880:intron 45.0%
GCCACAGAAGGCTAATAATG+GGG - tig0023247:47125-47144 Msa1406880:intron 45.0%
TGGGGCCATTACAAATTGAG+CGG - tig0023247:47143-47162 Msa1406880:intron 45.0%
TGCATGAGTGTACGAGATGG+TGG - tig0023247:45190-45209 Msa1406880:intron 50.0%
GCATGAGTGTACGAGATGGT+GGG - tig0023247:45191-45210 Msa1406880:intron 50.0%
! AGCTTTGTCTCGGAAACGCT+GGG + tig0023247:45342-45361 None:intergenic 50.0%
!! TAGCTTTGTCTCGGAAACGC+TGG + tig0023247:45343-45362 None:intergenic 50.0%
CTGCTGGACATAGTCTTCAG+TGG + tig0023247:45737-45756 None:intergenic 50.0%
CTGAAGACTATGTCCAGCAG+AGG - tig0023247:45737-45756 Msa1406880:CDS 50.0%
GACTATGTCCAGCAGAGGTT+TGG - tig0023247:45742-45761 Msa1406880:CDS 50.0%
CCTAGAAGTGGCTGATTGCA+TGG + tig0023247:45794-45813 None:intergenic 50.0%
CCATGCAATCAGCCACTTCT+AGG - tig0023247:45791-45810 Msa1406880:CDS 50.0%
CAACCACATCAGGGTTGTTG+CGG + tig0023247:45831-45850 None:intergenic 50.0%
TGCAGCAGTCAACCACATCA+GGG + tig0023247:45840-45859 None:intergenic 50.0%
ATGCAGCAGTCAACCACATC+AGG + tig0023247:45841-45860 None:intergenic 50.0%
CCCTTCAACTTCTCCTTCTC+TGG + tig0023247:46122-46141 None:intergenic 50.0%
!! AAGAAGCGTTGATCGGGACT+TGG - tig0023247:46543-46562 Msa1406880:CDS 50.0%
!! TCGTATGCTGCTTTCCAAGC+TGG - tig0023247:46573-46592 Msa1406880:CDS 50.0%
!! GCCCCATTATTAGCCTTCTG+TGG + tig0023247:47129-47148 None:intergenic 50.0%
GGGGCCATTACAAATTGAGC+GGG - tig0023247:47144-47163 Msa1406880:intron 50.0%
GGGCCATTACAAATTGAGCG+GGG - tig0023247:47145-47164 Msa1406880:intron 50.0%
CCGGGAGCTTCTACTTCAGA+GGG + tig0023247:44888-44907 None:intergenic 55.0%
!! CCCTCTGAAGTAGAAGCTCC+CGG - tig0023247:44885-44904 Msa1406880:intron 55.0%
ACCGGGAGCTTCTACTTCAG+AGG + tig0023247:44889-44908 None:intergenic 55.0%
GTAGGTGGTCTACAGTGGAC+TGG + tig0023247:45137-45156 None:intergenic 55.0%
CACACAACCCAAACCTCTGC+TGG + tig0023247:45753-45772 None:intergenic 55.0%
AGACCGCAACAACCCTGATG+TGG - tig0023247:45825-45844 Msa1406880:CDS 55.0%
AGAAAGGGTGGAGCCACAGA+AGG - tig0023247:47113-47132 Msa1406880:intron 55.0%
Chromosome Type Strat End Strand Name
tig0023247 gene 44188 47806 44188 ID=Msa1406880;Name=Msa1406880
tig0023247 mRNA 44188 47806 44188 ID=Msa1406880-mRNA-1;Parent=Msa1406880;Name=Msa1406880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175|1|1|1|1|1|5|645|288
tig0023247 exon 44188 44899 44188 ID=Msa1406880-mRNA-1:exon:24815;Parent=Msa1406880-mRNA-1
tig0023247 exon 45362 45477 45362 ID=Msa1406880-mRNA-1:exon:24814;Parent=Msa1406880-mRNA-1
tig0023247 exon 45727 45943 45727 ID=Msa1406880-mRNA-1:exon:24813;Parent=Msa1406880-mRNA-1
tig0023247 exon 46393 46660 46393 ID=Msa1406880-mRNA-1:exon:24812;Parent=Msa1406880-mRNA-1
tig0023247 exon 47433 47806 47433 ID=Msa1406880-mRNA-1:exon:24811;Parent=Msa1406880-mRNA-1
tig0023247 five_prime_UTR 47632 47806 47632 ID=Msa1406880-mRNA-1:five_prime_utr;Parent=Msa1406880-mRNA-1
tig0023247 CDS 47433 47631 47433 ID=Msa1406880-mRNA-1:cds;Parent=Msa1406880-mRNA-1
tig0023247 CDS 46393 46660 46393 ID=Msa1406880-mRNA-1:cds;Parent=Msa1406880-mRNA-1
tig0023247 CDS 45727 45943 45727 ID=Msa1406880-mRNA-1:cds;Parent=Msa1406880-mRNA-1
tig0023247 CDS 45362 45477 45362 ID=Msa1406880-mRNA-1:cds;Parent=Msa1406880-mRNA-1
tig0023247 CDS 44833 44899 44833 ID=Msa1406880-mRNA-1:cds;Parent=Msa1406880-mRNA-1
tig0023247 three_prime_UTR 44188 44832 44188 ID=Msa1406880-mRNA-1:three_prime_utr;Parent=Msa1406880-mRNA-1
Gene Sequence

>Msa1406880

ATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACTGAGAAAATTCACTTTTTCTTCTACTCGTTTCCTTGCTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCGTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGATGTTCCCAGCGTTTCCGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATTCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAACATCATTTAATGAGATACAAGACATCATACCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATCTTCAAAGCATATATTAATGCATTGAAGGAAGATCCAGAACAATACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAAGGGGTTTTAAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGCGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGCTTTGTGCGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTATCGTATGCTGCTTTCCAAGCTGGTTCAAGCTAAAGAGCTGCAAAGGGAATTTATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA

Protein sequence

>Msa1406880

MAALTSLSFSATTQCSLRKFTFSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFSSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN*