AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0589290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589290 MtrunA17_Chr4g0005861 93.841 276 13 3 1 273 1 275 0.0 526
Msa0589290 MtrunA17_Chr7g0241731 60.474 253 85 8 13 263 2 241 2.34e-84 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0589290 AT3G09050.1 51.852 243 102 5 29 262 7 243 3.52e-72 222

Find 57 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCGTCTTACGGATTATT+TGG 0.131531 4_2:-11896373 Msa0589290:CDS
CTGAATTTGTAACTTATATT+TGG 0.134552 4_2:-11894451 Msa0589290:three_prime_UTR
ATTGGTGAAGATGCTCTTAA+AGG 0.254433 4_2:-11896291 Msa0589290:CDS
AATGTTTACTTATTCTTCAT+TGG 0.294155 4_2:-11894959 Msa0589290:CDS
TGGAAGAAAGTTGCAGTTCT+TGG 0.299282 4_2:-11894878 Msa0589290:CDS
CCAAGTGAGTGCTTACAAAT+TGG 0.300920 4_2:-11894689 Msa0589290:three_prime_UTR
CCAGGTTGTGAAGTATTATC+AGG 0.334032 4_2:+11896453 None:intergenic
GAAACACGAGGATAAAACTA+TGG 0.335146 4_2:-11896652 Msa0589290:exon
GTTGATAGAAGAAGGATAGA+AGG 0.335400 4_2:+11896563 None:intergenic
GTAACAACAAATGAGGAAAA+TGG 0.350272 4_2:-11894998 Msa0589290:CDS
TCTGAATACTTGACACAGTT+TGG 0.366087 4_2:-11896342 Msa0589290:CDS
GAGTGAGATGCTAGCATTTG+AGG 0.367845 4_2:-11895194 Msa0589290:CDS
ATTAGATGTTTCAGTTTATG+AGG 0.372304 4_2:-11894736 Msa0589290:three_prime_UTR
TTCTTCTTGTGTTGTGGTGG+GGG 0.383441 4_2:+11896517 None:intergenic
AAGTTACAAATTCAGTGGTT+AGG 0.396419 4_2:+11894459 None:intergenic
TGAAATACAGCCGATAATAT+TGG 0.398165 4_2:-11894635 Msa0589290:three_prime_UTR
ATAGAAGGAAGGGTGAAATA+TGG 0.405812 4_2:+11896578 None:intergenic
AACTTAGTCACCAATATTAT+CGG 0.415936 4_2:+11894625 None:intergenic
CAAGTTGAGCTAGTAGCTCT+TGG 0.422521 4_2:+11896415 None:intergenic
ACTTCTTCTTGTGTTGTGGT+GGG 0.425298 4_2:+11896515 None:intergenic
TCTCATAAATGAGCACTTGA+TGG 0.430354 4_2:+11894519 None:intergenic
CTTCTTCTTGTGTTGTGGTG+GGG 0.430419 4_2:+11896516 None:intergenic
AGTATTATCAGGTTCATCAT+TGG 0.435688 4_2:+11896464 None:intergenic
AATGGAGATTGAAGGACAAA+TGG 0.440803 4_2:-11895122 Msa0589290:CDS
GGACTATTCTTTAAGAACTT+AGG 0.444508 4_2:-11895082 Msa0589290:CDS
CCAATTTGTAAGCACTCACT+TGG 0.447191 4_2:+11894689 None:intergenic
AACTTCTTCTTGTGTTGTGG+TGG 0.447722 4_2:+11896514 None:intergenic
CATCATTAAGTAGTACTGAT+TGG 0.456180 4_2:-11894898 Msa0589290:CDS
ACTAGACAGAGTAGAGTTTG+AGG 0.456846 4_2:-11895161 Msa0589290:CDS
TGGCTTTGAACATCACCTCC+AGG 0.458846 4_2:+11896435 None:intergenic
AAAGCTGAAATTGATAAGAT+TGG 0.462568 4_2:-11896309 Msa0589290:CDS
TTTAAGAACTTAGGACAGAA+AGG 0.478730 4_2:-11895073 Msa0589290:CDS
ATAGAAGAAGGATAGAAGGA+AGG 0.483138 4_2:+11896567 None:intergenic
ATCAGGTTCATCATTGGAGT+TGG 0.486180 4_2:+11896470 None:intergenic
CAGAACTTCTTCTTGTGTTG+TGG 0.493087 4_2:+11896511 None:intergenic
GGAAAGTGAAAGCAAAGTAA+TGG 0.500197 4_2:-11895140 Msa0589290:CDS
TAGAAGAAGGATAGAAGGAA+GGG 0.500325 4_2:+11896568 None:intergenic
CAATTTGTAAGCACTCACTT+GGG 0.502986 4_2:+11894690 None:intergenic
TGAAGATGCTCTTAAAGGAT+TGG 0.511035 4_2:-11896286 Msa0589290:CDS
ATGGAAGTTGACAGAAATGA+AGG 0.525154 4_2:-11895103 Msa0589290:CDS
CTCATAAATGAGCACTTGAT+GGG 0.539231 4_2:+11894520 None:intergenic
GTGGTGGTGTTGATAGAAGA+AGG 0.543371 4_2:+11896555 None:intergenic
GAAAGATGTAACAACAAATG+AGG 0.557127 4_2:-11895005 Msa0589290:CDS
TTAGATGTTTCAGTTTATGA+GGG 0.559230 4_2:-11894735 Msa0589290:three_prime_UTR
AGCAAAGTAATGGAGATTGA+AGG 0.564863 4_2:-11895130 Msa0589290:CDS
AATATAAGTTACAAATTCAG+TGG 0.566872 4_2:+11894454 None:intergenic
AAAGATGATGAACAATGAAG+AGG 0.571685 4_2:-11894794 Msa0589290:exon
CCTGATAATACTTCACAACC+TGG 0.574595 4_2:-11896453 Msa0589290:CDS
GGGGTGCAGAGTAGTAAAAG+TGG 0.581339 4_2:+11896536 None:intergenic
AGTTCTTGGAGCTATTCTTG+TGG 0.591041 4_2:-11894864 Msa0589290:CDS
AAACACGAGGATAAAACTAT+GGG 0.595359 4_2:-11896651 Msa0589290:exon
AATTTGTAAGCACTCACTTG+GGG 0.602776 4_2:+11894691 None:intergenic
ACTATGGGAGCTGACATACA+TGG 0.635758 4_2:-11896636 Msa0589290:CDS
TGCAATTCAGCAGTATAACA+TGG 0.647077 4_2:+11894601 None:intergenic
GTGCAGAGTAGTAAAAGTGG+TGG 0.674073 4_2:+11896539 None:intergenic
GATAATACTTCACAACCTGG+AGG 0.739356 4_2:-11896450 Msa0589290:CDS
ATAATGTACAAAGAAACACG+AGG 0.838573 4_2:-11896664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCTTATAAAAAAATA+TGG + chr4_2:11895625-11895644 None:intergenic 10.0%
!! ACATATCTTATAAAAAAATA+TGG + chr4_2:11895625-11895644 None:intergenic 10.0%
!!! ATACTTTAAAAACTGAATTA+TGG + chr4_2:11894943-11894962 None:intergenic 15.0%
!!! ATACTTTAAAAACTGAATTA+TGG + chr4_2:11894943-11894962 None:intergenic 15.0%
!! AGAGAATACATTATCAATTT+AGG + chr4_2:11895596-11895615 None:intergenic 20.0%
!! AATCACAAATGAATGTAAAA+GGG + chr4_2:11895843-11895862 None:intergenic 20.0%
!! TAATCACAAATGAATGTAAA+AGG + chr4_2:11895844-11895863 None:intergenic 20.0%
!!! CATCTTTTTTATTTCTTCTT+TGG + chr4_2:11896055-11896074 None:intergenic 20.0%
!! AATGTTTACTTATTCTTCAT+TGG - chr4_2:11896120-11896139 Msa0589290:intron 20.0%
!!! TCAAATCATTGATTTTGTAA+CGG - chr4_2:11896588-11896607 Msa0589290:CDS 20.0%
!! AATATAAGTTACAAATTCAG+TGG + chr4_2:11896628-11896647 None:intergenic 20.0%
!! CTGAATTTGTAACTTATATT+TGG - chr4_2:11896628-11896647 Msa0589290:CDS 20.0%
!! AGAGAATACATTATCAATTT+AGG + chr4_2:11895596-11895615 None:intergenic 20.0%
!! AATCACAAATGAATGTAAAA+GGG + chr4_2:11895843-11895862 None:intergenic 20.0%
!! TAATCACAAATGAATGTAAA+AGG + chr4_2:11895844-11895863 None:intergenic 20.0%
!!! CATCTTTTTTATTTCTTCTT+TGG + chr4_2:11896055-11896074 None:intergenic 20.0%
!! AATGTTTACTTATTCTTCAT+TGG - chr4_2:11896120-11896139 Msa0589290:intron 20.0%
!!! TCAAATCATTGATTTTGTAA+CGG - chr4_2:11896588-11896607 Msa0589290:CDS 20.0%
!! AATATAAGTTACAAATTCAG+TGG + chr4_2:11896628-11896647 None:intergenic 20.0%
!! CTGAATTTGTAACTTATATT+TGG - chr4_2:11896628-11896647 Msa0589290:CDS 20.0%
! AAAGCTGAAATTGATAAGAT+TGG - chr4_2:11894770-11894789 Msa0589290:three_prime_UTR 25.0%
! AAAACTGAATTATGGTTTAC+TGG + chr4_2:11894935-11894954 None:intergenic 25.0%
! TTAAAGTATAGTTCCTACTA+GGG + chr4_2:11895044-11895063 None:intergenic 25.0%
!! TTTAAAGTATAGTTCCTACT+AGG + chr4_2:11895045-11895064 None:intergenic 25.0%
!!! TTTGTTTTGTCAATATGCTA+GGG + chr4_2:11895359-11895378 None:intergenic 25.0%
! TACTTTGTACACTTATCATA+TGG - chr4_2:11895736-11895755 Msa0589290:intron 25.0%
!!! TTCATTGGTCTTTTTACATA+TGG - chr4_2:11896135-11896154 Msa0589290:intron 25.0%
!! CTTTTTACATATGGAATAGT+TGG - chr4_2:11896144-11896163 Msa0589290:intron 25.0%
! ATTAGATGTTTCAGTTTATG+AGG - chr4_2:11896343-11896362 Msa0589290:CDS 25.0%
! TTAGATGTTTCAGTTTATGA+GGG - chr4_2:11896344-11896363 Msa0589290:CDS 25.0%
! AACTTAGTCACCAATATTAT+CGG + chr4_2:11896457-11896476 None:intergenic 25.0%
! AAAGCTGAAATTGATAAGAT+TGG - chr4_2:11894770-11894789 Msa0589290:three_prime_UTR 25.0%
! AAAACTGAATTATGGTTTAC+TGG + chr4_2:11894935-11894954 None:intergenic 25.0%
! TTAAAGTATAGTTCCTACTA+GGG + chr4_2:11895044-11895063 None:intergenic 25.0%
!! TTTAAAGTATAGTTCCTACT+AGG + chr4_2:11895045-11895064 None:intergenic 25.0%
!!! TTTGTTTTGTCAATATGCTA+GGG + chr4_2:11895359-11895378 None:intergenic 25.0%
! TACTTTGTACACTTATCATA+TGG - chr4_2:11895736-11895755 Msa0589290:intron 25.0%
!!! TTCATTGGTCTTTTTACATA+TGG - chr4_2:11896135-11896154 Msa0589290:intron 25.0%
!! CTTTTTACATATGGAATAGT+TGG - chr4_2:11896144-11896163 Msa0589290:intron 25.0%
! ATTAGATGTTTCAGTTTATG+AGG - chr4_2:11896343-11896362 Msa0589290:CDS 25.0%
! TTAGATGTTTCAGTTTATGA+GGG - chr4_2:11896344-11896363 Msa0589290:CDS 25.0%
! AACTTAGTCACCAATATTAT+CGG + chr4_2:11896457-11896476 None:intergenic 25.0%
AAACACGAGGATAAAACTAT+GGG - chr4_2:11894428-11894447 Msa0589290:three_prime_UTR 30.0%
AGTATTATCAGGTTCATCAT+TGG + chr4_2:11894618-11894637 None:intergenic 30.0%
AGCTAACTAGAATCTATACA+TGG + chr4_2:11894882-11894901 None:intergenic 30.0%
TCATTATGTTAATCCCTAGT+AGG - chr4_2:11895028-11895047 Msa0589290:CDS 30.0%
AGATAAAATGAGAGAGAGAT+TGG - chr4_2:11895086-11895105 Msa0589290:CDS 30.0%
ATTGGACTATAATGTTAGTC+AGG - chr4_2:11895104-11895123 Msa0589290:CDS 30.0%
AAACTGTAGTTTGAATCCTA+GGG - chr4_2:11895160-11895179 Msa0589290:CDS 30.0%
! TTGAGAATTAGTCTCATAGT+CGG - chr4_2:11895238-11895257 Msa0589290:intron 30.0%
!!! CTTTGTTTTGTCAATATGCT+AGG + chr4_2:11895360-11895379 None:intergenic 30.0%
! GGACTATTCTTTAAGAACTT+AGG - chr4_2:11895997-11896016 Msa0589290:intron 30.0%
TTTAAGAACTTAGGACAGAA+AGG - chr4_2:11896006-11896025 Msa0589290:intron 30.0%
! GCTTTTGCTTTATCAACATT+AGG + chr4_2:11896033-11896052 None:intergenic 30.0%
GAAAGATGTAACAACAAATG+AGG - chr4_2:11896074-11896093 Msa0589290:intron 30.0%
GTAACAACAAATGAGGAAAA+TGG - chr4_2:11896081-11896100 Msa0589290:intron 30.0%
AGGAAAATGGAAGAAAAACA+AGG - chr4_2:11896094-11896113 Msa0589290:intron 30.0%
!! CATCATTAAGTAGTACTGAT+TGG - chr4_2:11896181-11896200 Msa0589290:intron 30.0%
AAAGATGATGAACAATGAAG+AGG - chr4_2:11896285-11896304 Msa0589290:CDS 30.0%
! ATATATCAAGCAGCTTTTCT+TGG - chr4_2:11896418-11896437 Msa0589290:CDS 30.0%
! TATATCAAGCAGCTTTTCTT+GGG - chr4_2:11896419-11896438 Msa0589290:CDS 30.0%
TGAAATACAGCCGATAATAT+TGG - chr4_2:11896444-11896463 Msa0589290:CDS 30.0%
AAGTTACAAATTCAGTGGTT+AGG + chr4_2:11896623-11896642 None:intergenic 30.0%
AAACACGAGGATAAAACTAT+GGG - chr4_2:11894428-11894447 Msa0589290:three_prime_UTR 30.0%
AGTATTATCAGGTTCATCAT+TGG + chr4_2:11894618-11894637 None:intergenic 30.0%
AGCTAACTAGAATCTATACA+TGG + chr4_2:11894882-11894901 None:intergenic 30.0%
TCATTATGTTAATCCCTAGT+AGG - chr4_2:11895028-11895047 Msa0589290:CDS 30.0%
AGATAAAATGAGAGAGAGAT+TGG - chr4_2:11895086-11895105 Msa0589290:CDS 30.0%
ATTGGACTATAATGTTAGTC+AGG - chr4_2:11895104-11895123 Msa0589290:CDS 30.0%
AAACTGTAGTTTGAATCCTA+GGG - chr4_2:11895160-11895179 Msa0589290:CDS 30.0%
! TTGAGAATTAGTCTCATAGT+CGG - chr4_2:11895238-11895257 Msa0589290:intron 30.0%
!!! CTTTGTTTTGTCAATATGCT+AGG + chr4_2:11895360-11895379 None:intergenic 30.0%
! GGACTATTCTTTAAGAACTT+AGG - chr4_2:11895997-11896016 Msa0589290:intron 30.0%
TTTAAGAACTTAGGACAGAA+AGG - chr4_2:11896006-11896025 Msa0589290:intron 30.0%
! GCTTTTGCTTTATCAACATT+AGG + chr4_2:11896033-11896052 None:intergenic 30.0%
GAAAGATGTAACAACAAATG+AGG - chr4_2:11896074-11896093 Msa0589290:intron 30.0%
GTAACAACAAATGAGGAAAA+TGG - chr4_2:11896081-11896100 Msa0589290:intron 30.0%
AGGAAAATGGAAGAAAAACA+AGG - chr4_2:11896094-11896113 Msa0589290:intron 30.0%
!! CATCATTAAGTAGTACTGAT+TGG - chr4_2:11896181-11896200 Msa0589290:intron 30.0%
AAAGATGATGAACAATGAAG+AGG - chr4_2:11896285-11896304 Msa0589290:CDS 30.0%
! ATATATCAAGCAGCTTTTCT+TGG - chr4_2:11896418-11896437 Msa0589290:CDS 30.0%
! TATATCAAGCAGCTTTTCTT+GGG - chr4_2:11896419-11896438 Msa0589290:CDS 30.0%
TGAAATACAGCCGATAATAT+TGG - chr4_2:11896444-11896463 Msa0589290:CDS 30.0%
AAGTTACAAATTCAGTGGTT+AGG + chr4_2:11896623-11896642 None:intergenic 30.0%
GAAACACGAGGATAAAACTA+TGG - chr4_2:11894427-11894446 Msa0589290:three_prime_UTR 35.0%
ATAGAAGGAAGGGTGAAATA+TGG + chr4_2:11894504-11894523 None:intergenic 35.0%
TAGAAGAAGGATAGAAGGAA+GGG + chr4_2:11894514-11894533 None:intergenic 35.0%
ATAGAAGAAGGATAGAAGGA+AGG + chr4_2:11894515-11894534 None:intergenic 35.0%
! GTTGATAGAAGAAGGATAGA+AGG + chr4_2:11894519-11894538 None:intergenic 35.0%
GACAGAAAAAGTTCGTCTTA+CGG - chr4_2:11894697-11894716 Msa0589290:three_prime_UTR 35.0%
! AGTTCGTCTTACGGATTATT+TGG - chr4_2:11894706-11894725 Msa0589290:three_prime_UTR 35.0%
TCTGAATACTTGACACAGTT+TGG - chr4_2:11894737-11894756 Msa0589290:three_prime_UTR 35.0%
ATTGGTGAAGATGCTCTTAA+AGG - chr4_2:11894788-11894807 Msa0589290:exon 35.0%
TGAAGATGCTCTTAAAGGAT+TGG - chr4_2:11894793-11894812 Msa0589290:exon 35.0%
GAAACTGTAGTTTGAATCCT+AGG - chr4_2:11895159-11895178 Msa0589290:CDS 35.0%
AACTGTAGTTTGAATCCTAG+GGG - chr4_2:11895161-11895180 Msa0589290:CDS 35.0%
TATGCTAGGGACTAATACAA+AGG + chr4_2:11895346-11895365 None:intergenic 35.0%
! GATTCTCACAGTGTCAATTT+TGG + chr4_2:11895461-11895480 None:intergenic 35.0%
!! GCATAAGTACTGCTTTTAAC+AGG + chr4_2:11895789-11895808 None:intergenic 35.0%
GGAAAGTGAAAGCAAAGTAA+TGG - chr4_2:11895939-11895958 Msa0589290:intron 35.0%
! AGCAAAGTAATGGAGATTGA+AGG - chr4_2:11895949-11895968 Msa0589290:intron 35.0%
AATGGAGATTGAAGGACAAA+TGG - chr4_2:11895957-11895976 Msa0589290:intron 35.0%
ATGGAAGTTGACAGAAATGA+AGG - chr4_2:11895976-11895995 Msa0589290:intron 35.0%
AATTTGTAAGCACTCACTTG+GGG + chr4_2:11896391-11896410 None:intergenic 35.0%
CAATTTGTAAGCACTCACTT+GGG + chr4_2:11896392-11896411 None:intergenic 35.0%
TGCAATTCAGCAGTATAACA+TGG + chr4_2:11896481-11896500 None:intergenic 35.0%
CTCATAAATGAGCACTTGAT+GGG + chr4_2:11896562-11896581 None:intergenic 35.0%
TCTCATAAATGAGCACTTGA+TGG + chr4_2:11896563-11896582 None:intergenic 35.0%
GAAACACGAGGATAAAACTA+TGG - chr4_2:11894427-11894446 Msa0589290:three_prime_UTR 35.0%
ATAGAAGGAAGGGTGAAATA+TGG + chr4_2:11894504-11894523 None:intergenic 35.0%
TAGAAGAAGGATAGAAGGAA+GGG + chr4_2:11894514-11894533 None:intergenic 35.0%
ATAGAAGAAGGATAGAAGGA+AGG + chr4_2:11894515-11894534 None:intergenic 35.0%
! GTTGATAGAAGAAGGATAGA+AGG + chr4_2:11894519-11894538 None:intergenic 35.0%
GACAGAAAAAGTTCGTCTTA+CGG - chr4_2:11894697-11894716 Msa0589290:three_prime_UTR 35.0%
! AGTTCGTCTTACGGATTATT+TGG - chr4_2:11894706-11894725 Msa0589290:three_prime_UTR 35.0%
TCTGAATACTTGACACAGTT+TGG - chr4_2:11894737-11894756 Msa0589290:three_prime_UTR 35.0%
ATTGGTGAAGATGCTCTTAA+AGG - chr4_2:11894788-11894807 Msa0589290:exon 35.0%
TGAAGATGCTCTTAAAGGAT+TGG - chr4_2:11894793-11894812 Msa0589290:exon 35.0%
GAAACTGTAGTTTGAATCCT+AGG - chr4_2:11895159-11895178 Msa0589290:CDS 35.0%
AACTGTAGTTTGAATCCTAG+GGG - chr4_2:11895161-11895180 Msa0589290:CDS 35.0%
TATGCTAGGGACTAATACAA+AGG + chr4_2:11895346-11895365 None:intergenic 35.0%
! GATTCTCACAGTGTCAATTT+TGG + chr4_2:11895461-11895480 None:intergenic 35.0%
!! GCATAAGTACTGCTTTTAAC+AGG + chr4_2:11895789-11895808 None:intergenic 35.0%
GGAAAGTGAAAGCAAAGTAA+TGG - chr4_2:11895939-11895958 Msa0589290:intron 35.0%
! AGCAAAGTAATGGAGATTGA+AGG - chr4_2:11895949-11895968 Msa0589290:intron 35.0%
AATGGAGATTGAAGGACAAA+TGG - chr4_2:11895957-11895976 Msa0589290:intron 35.0%
ATGGAAGTTGACAGAAATGA+AGG - chr4_2:11895976-11895995 Msa0589290:intron 35.0%
AATTTGTAAGCACTCACTTG+GGG + chr4_2:11896391-11896410 None:intergenic 35.0%
CAATTTGTAAGCACTCACTT+GGG + chr4_2:11896392-11896411 None:intergenic 35.0%
TGCAATTCAGCAGTATAACA+TGG + chr4_2:11896481-11896500 None:intergenic 35.0%
CTCATAAATGAGCACTTGAT+GGG + chr4_2:11896562-11896581 None:intergenic 35.0%
TCTCATAAATGAGCACTTGA+TGG + chr4_2:11896563-11896582 None:intergenic 35.0%
ACTTCTTCTTGTGTTGTGGT+GGG + chr4_2:11894567-11894586 None:intergenic 40.0%
AACTTCTTCTTGTGTTGTGG+TGG + chr4_2:11894568-11894587 None:intergenic 40.0%
CAGAACTTCTTCTTGTGTTG+TGG + chr4_2:11894571-11894590 None:intergenic 40.0%
ATCAGGTTCATCATTGGAGT+TGG + chr4_2:11894612-11894631 None:intergenic 40.0%
! CCAGGTTGTGAAGTATTATC+AGG + chr4_2:11894629-11894648 None:intergenic 40.0%
CCTGATAATACTTCACAACC+TGG - chr4_2:11894626-11894645 Msa0589290:three_prime_UTR 40.0%
GATAATACTTCACAACCTGG+AGG - chr4_2:11894629-11894648 Msa0589290:three_prime_UTR 40.0%
GGACTATAATGTTAGTCAGG+TGG - chr4_2:11895107-11895126 Msa0589290:CDS 40.0%
AGTTTCTCAGATACTCCTAC+GGG + chr4_2:11895145-11895164 None:intergenic 40.0%
CAGTTTCTCAGATACTCCTA+CGG + chr4_2:11895146-11895165 None:intergenic 40.0%
CTTTCGTTCTCAACCTTCAT+AGG + chr4_2:11895192-11895211 None:intergenic 40.0%
CTATGAAGGTTGAGAACGAA+AGG - chr4_2:11895190-11895209 Msa0589290:CDS 40.0%
!! CTCACAGTGTCAATTTTGGT+GGG + chr4_2:11895457-11895476 None:intergenic 40.0%
! TCTCACAGTGTCAATTTTGG+TGG + chr4_2:11895458-11895477 None:intergenic 40.0%
GAATCAAACTCGAGACTTTG+AGG - chr4_2:11895476-11895495 Msa0589290:intron 40.0%
ACTAGACAGAGTAGAGTTTG+AGG - chr4_2:11895918-11895937 Msa0589290:intron 40.0%
TGGAAGAAAGTTGCAGTTCT+TGG - chr4_2:11896201-11896220 Msa0589290:intron 40.0%
AGTTCTTGGAGCTATTCTTG+TGG - chr4_2:11896215-11896234 Msa0589290:intron 40.0%
CCAATTTGTAAGCACTCACT+TGG + chr4_2:11896393-11896412 None:intergenic 40.0%
CCAAGTGAGTGCTTACAAAT+TGG - chr4_2:11896390-11896409 Msa0589290:CDS 40.0%
ACTTCTTCTTGTGTTGTGGT+GGG + chr4_2:11894567-11894586 None:intergenic 40.0%
AACTTCTTCTTGTGTTGTGG+TGG + chr4_2:11894568-11894587 None:intergenic 40.0%
CAGAACTTCTTCTTGTGTTG+TGG + chr4_2:11894571-11894590 None:intergenic 40.0%
ATCAGGTTCATCATTGGAGT+TGG + chr4_2:11894612-11894631 None:intergenic 40.0%
! CCAGGTTGTGAAGTATTATC+AGG + chr4_2:11894629-11894648 None:intergenic 40.0%
CCTGATAATACTTCACAACC+TGG - chr4_2:11894626-11894645 Msa0589290:three_prime_UTR 40.0%
GATAATACTTCACAACCTGG+AGG - chr4_2:11894629-11894648 Msa0589290:three_prime_UTR 40.0%
GGACTATAATGTTAGTCAGG+TGG - chr4_2:11895107-11895126 Msa0589290:CDS 40.0%
AGTTTCTCAGATACTCCTAC+GGG + chr4_2:11895145-11895164 None:intergenic 40.0%
CAGTTTCTCAGATACTCCTA+CGG + chr4_2:11895146-11895165 None:intergenic 40.0%
CTTTCGTTCTCAACCTTCAT+AGG + chr4_2:11895192-11895211 None:intergenic 40.0%
CTATGAAGGTTGAGAACGAA+AGG - chr4_2:11895190-11895209 Msa0589290:CDS 40.0%
!! CTCACAGTGTCAATTTTGGT+GGG + chr4_2:11895457-11895476 None:intergenic 40.0%
! TCTCACAGTGTCAATTTTGG+TGG + chr4_2:11895458-11895477 None:intergenic 40.0%
GAATCAAACTCGAGACTTTG+AGG - chr4_2:11895476-11895495 Msa0589290:intron 40.0%
ACTAGACAGAGTAGAGTTTG+AGG - chr4_2:11895918-11895937 Msa0589290:intron 40.0%
TGGAAGAAAGTTGCAGTTCT+TGG - chr4_2:11896201-11896220 Msa0589290:intron 40.0%
AGTTCTTGGAGCTATTCTTG+TGG - chr4_2:11896215-11896234 Msa0589290:intron 40.0%
CCAATTTGTAAGCACTCACT+TGG + chr4_2:11896393-11896412 None:intergenic 40.0%
CCAAGTGAGTGCTTACAAAT+TGG - chr4_2:11896390-11896409 Msa0589290:CDS 40.0%
ACTATGGGAGCTGACATACA+TGG - chr4_2:11894443-11894462 Msa0589290:three_prime_UTR 45.0%
!! GTGGTGGTGTTGATAGAAGA+AGG + chr4_2:11894527-11894546 None:intergenic 45.0%
GTGCAGAGTAGTAAAAGTGG+TGG + chr4_2:11894543-11894562 None:intergenic 45.0%
TTCTTCTTGTGTTGTGGTGG+GGG + chr4_2:11894565-11894584 None:intergenic 45.0%
CTTCTTCTTGTGTTGTGGTG+GGG + chr4_2:11894566-11894585 None:intergenic 45.0%
! CAAGTTGAGCTAGTAGCTCT+TGG + chr4_2:11894667-11894686 None:intergenic 45.0%
GTTTCTCAGATACTCCTACG+GGG + chr4_2:11895144-11895163 None:intergenic 45.0%
GGTCCAAATGACTGAAGTAG+CGG - chr4_2:11895259-11895278 Msa0589290:intron 45.0%
GTCCAAATGACTGAAGTAGC+GGG - chr4_2:11895260-11895279 Msa0589290:intron 45.0%
TCCAAATGACTGAAGTAGCG+GGG - chr4_2:11895261-11895280 Msa0589290:intron 45.0%
GAGTGAGATGCTAGCATTTG+AGG - chr4_2:11895885-11895904 Msa0589290:intron 45.0%
ACTATGGGAGCTGACATACA+TGG - chr4_2:11894443-11894462 Msa0589290:three_prime_UTR 45.0%
!! GTGGTGGTGTTGATAGAAGA+AGG + chr4_2:11894527-11894546 None:intergenic 45.0%
GTGCAGAGTAGTAAAAGTGG+TGG + chr4_2:11894543-11894562 None:intergenic 45.0%
TTCTTCTTGTGTTGTGGTGG+GGG + chr4_2:11894565-11894584 None:intergenic 45.0%
CTTCTTCTTGTGTTGTGGTG+GGG + chr4_2:11894566-11894585 None:intergenic 45.0%
! CAAGTTGAGCTAGTAGCTCT+TGG + chr4_2:11894667-11894686 None:intergenic 45.0%
GTTTCTCAGATACTCCTACG+GGG + chr4_2:11895144-11895163 None:intergenic 45.0%
GGTCCAAATGACTGAAGTAG+CGG - chr4_2:11895259-11895278 Msa0589290:intron 45.0%
GTCCAAATGACTGAAGTAGC+GGG - chr4_2:11895260-11895279 Msa0589290:intron 45.0%
TCCAAATGACTGAAGTAGCG+GGG - chr4_2:11895261-11895280 Msa0589290:intron 45.0%
GAGTGAGATGCTAGCATTTG+AGG - chr4_2:11895885-11895904 Msa0589290:intron 45.0%
GGGGTGCAGAGTAGTAAAAG+TGG + chr4_2:11894546-11894565 None:intergenic 50.0%
!! TGGCTTTGAACATCACCTCC+AGG + chr4_2:11894647-11894666 None:intergenic 50.0%
TGGAAGCAATTTGACCCCGT+AGG - chr4_2:11895127-11895146 Msa0589290:CDS 50.0%
CCTTCATAGGTTACTCCCCT+AGG + chr4_2:11895179-11895198 None:intergenic 50.0%
CCTAGGGGAGTAACCTATGA+AGG - chr4_2:11895176-11895195 Msa0589290:CDS 50.0%
TCCCCGCTACTTCAGTCATT+TGG + chr4_2:11895265-11895284 None:intergenic 50.0%
!! ATGCCATGGTGGACTCATTG+TGG - chr4_2:11895284-11895303 Msa0589290:intron 50.0%
! TGGACTCATTGTGGTGCCAA+AGG - chr4_2:11895293-11895312 Msa0589290:intron 50.0%
! GGTGCCAAAGGCTCTAATCA+CGG - chr4_2:11895305-11895324 Msa0589290:intron 50.0%
CTCACCGTGATTAGAGCCTT+TGG + chr4_2:11895312-11895331 None:intergenic 50.0%
GGGGTGCAGAGTAGTAAAAG+TGG + chr4_2:11894546-11894565 None:intergenic 50.0%
!! TGGCTTTGAACATCACCTCC+AGG + chr4_2:11894647-11894666 None:intergenic 50.0%
TGGAAGCAATTTGACCCCGT+AGG - chr4_2:11895127-11895146 Msa0589290:CDS 50.0%
CCTTCATAGGTTACTCCCCT+AGG + chr4_2:11895179-11895198 None:intergenic 50.0%
CCTAGGGGAGTAACCTATGA+AGG - chr4_2:11895176-11895195 Msa0589290:CDS 50.0%
TCCCCGCTACTTCAGTCATT+TGG + chr4_2:11895265-11895284 None:intergenic 50.0%
!! ATGCCATGGTGGACTCATTG+TGG - chr4_2:11895284-11895303 Msa0589290:intron 50.0%
! TGGACTCATTGTGGTGCCAA+AGG - chr4_2:11895293-11895312 Msa0589290:intron 50.0%
! GGTGCCAAAGGCTCTAATCA+CGG - chr4_2:11895305-11895324 Msa0589290:intron 50.0%
CTCACCGTGATTAGAGCCTT+TGG + chr4_2:11895312-11895331 None:intergenic 50.0%
GCACCACAATGAGTCCACCA+TGG + chr4_2:11895290-11895309 None:intergenic 55.0%
GCACCACAATGAGTCCACCA+TGG + chr4_2:11895290-11895309 None:intergenic 55.0%
! CTGAAGTAGCGGGGATGCCA+TGG - chr4_2:11895270-11895289 Msa0589290:intron 60.0%
! AAGTAGCGGGGATGCCATGG+TGG - chr4_2:11895273-11895292 Msa0589290:intron 60.0%
! CTGAAGTAGCGGGGATGCCA+TGG - chr4_2:11895270-11895289 Msa0589290:intron 60.0%
! AAGTAGCGGGGATGCCATGG+TGG - chr4_2:11895273-11895292 Msa0589290:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 11894425 11896676 11894425 ID=Msa0589290;Name=Msa0589290
chr4_2 mRNA 11894425 11896676 11894425 ID=Msa0589290-mRNA-1;Parent=Msa0589290;Name=Msa0589290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=21|1|1|1|1|1|2|374|273
chr4_2 exon 11894425 11895233 11894425 ID=Msa0589290-mRNA-1:exon:3546;Parent=Msa0589290-mRNA-1
chr4_2 exon 11896269 11896676 11896269 ID=Msa0589290-mRNA-1:exon:3545;Parent=Msa0589290-mRNA-1
chr4_2 five_prime_UTR 11896656 11896676 11896656 ID=Msa0589290-mRNA-1:five_prime_utr;Parent=Msa0589290-mRNA-1
chr4_2 CDS 11896269 11896655 11896269 ID=Msa0589290-mRNA-1:cds;Parent=Msa0589290-mRNA-1
chr4_2 CDS 11894799 11895233 11894799 ID=Msa0589290-mRNA-1:cds;Parent=Msa0589290-mRNA-1
chr4_2 three_prime_UTR 11894425 11894798 11894425 ID=Msa0589290-mRNA-1:three_prime_utr;Parent=Msa0589290-mRNA-1
Gene Sequence

>Msa0589290

ATGGGAGCTGACATACATGGCATCACTTTAGTTGACAAGATGATTGCTCTCAAAGCCATATTTCACCCTTCCTTCTATCCTTCTTCTATCAACACCACCACTTTTACTACTCTGCACCCCCACCACAACACAAGAAGAAGTTCTGTTTTTCTCTGTCTTTGTACCAACTCCAATGATGAACCTGATAATACTTCACAACCTGGAGGTGATGTTCAAAGCCAAGAGCTACTAGCTCAACTTGCAATGCTTGAGACAGAAAAAGTTCGTCTTACGGATTATTTGGATGAAAGATCTGAATACTTGACACAGTTTGGTGAAGAAGCTAAAGCTGAAATTGATAAGATTGGTGAAGATGCTCTTAAAGGATTGGATGAAGCTAGTGATAGAATAACAGCAAAAATAGAGAGTGAGATGCTAGCATTTGAGGAATCAAATGAACTAGACAGAGTAGAGTTTGAGGAAAGTGAAAGCAAAGTAATGGAGATTGAAGGACAAATGGAAGTTGACAGAAATGAAGGACTATTCTTTAAGAACTTAGGACAGAAAGGACCTAATGTTGATAAAGCAAAAGCCAAAGAAGAAATAAAAAAGATGAAAGATGTAACAACAAATGAGGAAAATGGAAGAAAAACAAGGAAAAATGTTTACTTATTCTTCATTGGTCTTTTTACATATGGAATAGTTGGTTCTATTAATGTCTCATCATTAAGTAGTACTGATTGGAAGAAAGTTGCAGTTCTTGGAGCTATTCTTGTGGCTTTGTTTTCTCAGTTCATTTATGAACAAAATAAAGACAATAATCAGAAAGATGATGAACAATGA

Protein sequence

>Msa0589290

MGADIHGITLVDKMIALKAIFHPSFYPSSINTTTFTTLHPHHNTRRSSVFLCLCTNSNDEPDNTSQPGGDVQSQELLAQLAMLETEKVRLTDYLDERSEYLTQFGEEAKAEIDKIGEDALKGLDEASDRITAKIESEMLAFEESNELDRVEFEESESKVMEIEGQMEVDRNEGLFFKNLGQKGPNVDKAKAKEEIKKMKDVTTNEENGRKTRKNVYLFFIGLFTYGIVGSINVSSLSSTDWKKVAVLGAILVALFSQFIYEQNKDNNQKDDEQ*