AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374850 MtrunA17_Chr1g0210971 99.482 386 2 0 1 386 1 386 0.0 792
Msa1374850 MtrunA17_Chr4g0004681 33.448 290 166 5 60 349 43 305 1.63e-39 142
Msa1374850 MtrunA17_Chr4g0004711 33.798 287 160 7 66 349 49 308 5.44e-39 141
Msa1374850 MtrunA17_Chr4g0004721 32.990 291 169 6 60 349 44 309 1.69e-37 137
Msa1374850 MtrunA17_Chr4g0000511 34.228 298 173 7 50 346 117 392 3.53e-35 136
Msa1374850 MtrunA17_Chr1g0208141 33.564 289 162 8 63 346 96 359 1.30e-29 120
Msa1374850 MtrunA17_Chr4g0004741 32.990 291 169 7 60 349 43 308 5.57e-27 109
Msa1374850 MtrunA17_Chr8g0351141 27.344 256 166 2 94 349 86 321 6.98e-27 109
Msa1374850 MtrunA17_Chr8g0351121 27.419 248 157 4 94 340 120 345 1.33e-26 108
Msa1374850 MtrunA17_Chr8g0351111 28.571 259 151 8 94 347 83 312 2.41e-26 107
Msa1374850 MtrunA17_Chr2g0331641 29.771 262 157 3 91 349 72 309 6.62e-25 103
Msa1374850 MtrunA17_Chr6g0450811 26.809 235 151 6 94 325 129 345 2.70e-11 64.7
Msa1374850 MtrunA17_Chr7g0248631 24.364 275 181 7 100 365 88 344 6.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374850 AT1G68010.1 88.860 386 43 0 1 386 1 386 0.0 697
Msa1374850 AT1G68010.2 88.630 387 43 1 1 386 1 387 0.0 692
Msa1374850 AT1G68010.3 90.909 341 31 0 1 341 1 341 0.0 625
Msa1374850 AT4G34200.1 34.737 285 164 6 63 346 102 365 7.37e-34 132
Msa1374850 AT1G17745.1 32.558 344 192 11 10 346 76 386 1.41e-33 132
Msa1374850 AT1G79870.1 31.373 306 172 8 45 346 34 305 7.87e-33 125
Msa1374850 AT3G19480.1 33.221 298 176 7 50 346 75 350 1.71e-30 123
Msa1374850 AT1G17745.2 30.435 368 195 11 10 346 76 413 6.95e-29 119
Msa1374850 AT1G79870.2 29.180 305 161 7 45 346 34 286 6.75e-27 108
Msa1374850 AT1G12550.1 27.413 259 163 5 94 350 82 317 8.61e-26 106
Msa1374850 AT2G45630.2 25.723 311 201 6 39 347 45 327 1.06e-23 100
Msa1374850 AT1G72190.1 26.966 267 173 8 88 349 117 366 1.71e-15 77.8

Find 132 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTAGCATCGATTTAA+TGG 0.180188 tig0019590:+4360 Msa1374850:three_prime_UTR
TGTATCCATCCTCACTTATA+AGG 0.250595 tig0019590:+4427 Msa1374850:three_prime_UTR
TGATGATGTGTAGAGGATTT+TGG 0.254421 tig0019590:-184 Msa1374850:intergenic
TCACATTAACTTCAAATAAA+AGG 0.264985 tig0019590:+159 Msa1374850:five_prime_UTR
AGCATATGGTGCTTTCTTAA+AGG 0.276108 tig0019590:+2627 Msa1374850:intron
CTTGCATTCTTCTGATCTAA+TGG 0.300930 tig0019590:-4086 Msa1374850:intergenic
AACCAGTTTCAATTCAAGTA+TGG 0.311416 tig0019590:+406 Msa1374850:CDS
GTTGTAGTTTATTGAGCAAT+TGG 0.320233 tig0019590:+4311 Msa1374850:three_prime_UTR
GATAAGTGTGATGGAGTTAT+TGG 0.337723 tig0019590:+688 Msa1374850:CDS
AGGAAAAGTGTTAATAATAA+AGG 0.340766 tig0019590:+4200 Msa1374850:three_prime_UTR
TCTAAATTCATCCATTTCAT+TGG 0.349195 tig0019590:+240 Msa1374850:five_prime_UTR
GTCAATGCTGCAAACAAATA+TGG 0.354110 tig0019590:+1279 Msa1374850:CDS
TTCCATACTTGAATTGAAAC+TGG 0.356787 tig0019590:-408 Msa1374850:intergenic
ATTGAGCAATTGGGAGAGTT+GGG 0.365636 tig0019590:+4321 Msa1374850:three_prime_UTR
AGGCAAAGCTTTCAGTAATA+TGG 0.369024 tig0019590:+1233 Msa1374850:CDS
GGACAAACAGTTGGTGTTAT+CGG 0.377915 tig0019590:+1913 Msa1374850:CDS
TTTCTGCTGTATCAGGTTGA+AGG 0.378719 tig0019590:+2461 Msa1374850:intron
CAAGCTTTGAAGGCTCTTGT+AGG 0.382688 tig0019590:-3896 Msa1374850:intergenic
TATGCACACACAAGCTTTGA+AGG 0.385122 tig0019590:-3906 Msa1374850:intergenic
AACTCTAACCTTCTTCATCT+TGG 0.389875 tig0019590:-2877 Msa1374850:intergenic
TTCTCTGCTTTGAGCAAAGC+AGG 0.391693 tig0019590:+1210 Msa1374850:CDS
TGTTTATCTGGCAGATTTGT+TGG 0.395143 tig0019590:+1877 Msa1374850:intron
AGATTGATCCAACGAGTTCC+AGG 0.398695 tig0019590:-471 Msa1374850:intergenic
GATTAGTCTTCATCCTATCT+TGG 0.399037 tig0019590:+2815 Msa1374850:intron
CAGTATGGTTTGATGCCAAT+AGG 0.402824 tig0019590:+3650 Msa1374850:CDS
GTTATCGGAGCTGGCCGTAT+TGG 0.403616 tig0019590:+1928 Msa1374850:CDS
TATGTTTCTGACCAATGAAA+TGG 0.405529 tig0019590:-251 Msa1374850:intergenic
AAGAAATGGCTCCACCCTAT+TGG 0.407299 tig0019590:-3665 Msa1374850:intergenic
GGTAGAGATCGAAGTATATC+AGG 0.410543 tig0019590:-2496 Msa1374850:intergenic
AAAACAAATTGTTCTTATTG+AGG 0.414112 tig0019590:+4135 Msa1374850:three_prime_UTR
AGATCAAGGGCTACCCAGTA+TGG 0.420729 tig0019590:+3635 Msa1374850:CDS
CTATTGGCATCAAACCATAC+TGG 0.422550 tig0019590:-3649 Msa1374850:intergenic
CGTAGGCCTTGATGTGTTTG+AGG 0.424117 tig0019590:+3074 Msa1374850:CDS
ATACACTACAGCTTTGAAAC+TGG 0.431086 tig0019590:-3852 Msa1374850:intergenic
TTCTTCAACTCTGCAAGTCC+AGG 0.432293 tig0019590:-3201 Msa1374850:intergenic
TATTGAGCAATTGGGAGAGT+TGG 0.433084 tig0019590:+4320 Msa1374850:three_prime_UTR
TTCTTACTATATCTGCCTCT+TGG 0.435870 tig0019590:-2705 Msa1374850:intergenic
TTGTAGTTTATTGAGCAATT+GGG 0.437297 tig0019590:+4312 Msa1374850:three_prime_UTR
TGACTTTGGCAGCTGCTAGA+AGG 0.446003 tig0019590:+1658 Msa1374850:CDS
GCTTGCAGCTTCACTGACTT+TGG 0.451429 tig0019590:+1644 Msa1374850:CDS
GAAGATATCATTGCTTTGAT+TGG 0.457462 tig0019590:+664 Msa1374850:CDS
ACAATGCTTGGGCATGCAGC+TGG 0.459559 tig0019590:-3706 Msa1374850:intergenic
GGTGCTTTCTTAAAGGCAAA+TGG 0.460883 tig0019590:+2634 Msa1374850:CDS
ACTTCAAAAGTACATAAATC+AGG 0.460989 tig0019590:+4180 Msa1374850:three_prime_UTR
AGTGCAACTTCATCAATAAC+AGG 0.463873 tig0019590:-3018 Msa1374850:intergenic
AAACACCAGTAACTTGGAAA+AGG 0.465743 tig0019590:+2659 Msa1374850:CDS
TATAATACAGGGCAAGATCA+AGG 0.470540 tig0019590:+3621 Msa1374850:intron
ACCTTGACTCACTGATTCAA+TGG 0.471925 tig0019590:+380 Msa1374850:exon
CTTGTTGACGAGGTGGTAAG+TGG 0.472748 tig0019590:-2844 Msa1374850:intergenic
AGTATGGTTTGATGCCAATA+GGG 0.473886 tig0019590:+3651 Msa1374850:CDS
ACACATTGCTTCTGCTTCCA+AGG 0.479271 tig0019590:+3239 Msa1374850:CDS
ATTTAATGGTAGAATGTAGT+AGG 0.480449 tig0019590:+4374 Msa1374850:three_prime_UTR
AACAAATATGGTGTTGCTGT+TGG 0.490286 tig0019590:+1291 Msa1374850:CDS
TTGGAAAAGGGCAGCATCCA+TGG 0.493217 tig0019590:+2672 Msa1374850:CDS
ATGGTGAAACACCAGTAACT+TGG 0.493816 tig0019590:+2653 Msa1374850:CDS
TTCTGCTGTATCAGGTTGAA+GGG 0.494245 tig0019590:+2462 Msa1374850:intron
ATTCAAGTATGGAACCCAAA+TGG 0.502702 tig0019590:+417 Msa1374850:CDS
GCTTTCAGTAATATGGCTGT+TGG 0.504769 tig0019590:+1240 Msa1374850:CDS
GCAAGTCCAGGTTTCATGTA+GGG 0.504842 tig0019590:-3189 Msa1374850:intergenic
GTATCCATCCTCACTTATAA+GGG 0.511831 tig0019590:+4428 Msa1374850:three_prime_UTR
CGAGTCTTTCCTTGTTGACG+AGG 0.512210 tig0019590:-2854 Msa1374850:intergenic
AACAGAATGATTGAGTGATT+CGG 0.516366 tig0019590:-297 Msa1374850:intergenic
ACAGTTGGTGTTATCGGAGC+TGG 0.526985 tig0019590:+1919 Msa1374850:CDS
GCAGATGAGTTCATGAGGGC+AGG 0.528261 tig0019590:+1690 Msa1374850:CDS
GCAGTGGACTCGTGAGGGAA+TGG 0.533885 tig0019590:+3479 Msa1374850:intron
ATCCTCACTTATAAGGGAGG+AGG 0.534862 tig0019590:+4434 Msa1374850:three_prime_UTR
AACACCAGTAACTTGGAAAA+GGG 0.538959 tig0019590:+2660 Msa1374850:CDS
TTGCATAAGCTGATCCAATA+CGG 0.539584 tig0019590:-1942 Msa1374850:intergenic
TCAAGGCCTACGCGAAACAT+TGG 0.540440 tig0019590:-3063 Msa1374850:intergenic
AAAGCTGTAGTGTATGCGTA+CGG 0.544002 tig0019590:+3860 Msa1374850:exon
GAAGTTAATGTGAGGTGAGG+AGG 0.544804 tig0019590:-149 Msa1374850:intergenic
TGCAAGTCCAGGTTTCATGT+AGG 0.550331 tig0019590:-3190 Msa1374850:intergenic
CTCTTGGAGAACCTCGTCCA+TGG 0.559767 tig0019590:-2689 Msa1374850:intergenic
GTCTTTCCTTGTTGACGAGG+TGG 0.560436 tig0019590:-2851 Msa1374850:intergenic
TCCTCACTTATAAGGGAGGA+GGG 0.561330 tig0019590:+4435 Msa1374850:three_prime_UTR
GCTAGCAGCTCTAAATGTGC+TGG 0.561333 tig0019590:+3506 Msa1374850:CDS
AAGCTGTAGTGTATGCGTAC+GGG 0.565234 tig0019590:+3861 Msa1374850:exon
GTGTGATGGAGTTATTGGAC+AGG 0.566011 tig0019590:+693 Msa1374850:CDS
CAATTACCTCAAACACATCA+AGG 0.566746 tig0019590:-3080 Msa1374850:intergenic
TCCTCCCTTATAAGTGAGGA+TGG 0.567206 tig0019590:-4432 Msa1374850:intergenic
GGGCAGGATTATATGATGGC+TGG 0.567472 tig0019590:+1706 Msa1374850:CDS
TATTGATGAAGTTGCACTTG+TGG 0.567753 tig0019590:+3023 Msa1374850:CDS
AGTCAAGAAAGAACATGTAA+AGG 0.568166 tig0019590:+4289 Msa1374850:three_prime_UTR
CACTTACCACCTCGTCAACA+AGG 0.569943 tig0019590:+2845 Msa1374850:CDS
ATTCTTATAAACTGCAGTAG+AGG 0.572235 tig0019590:+2994 Msa1374850:CDS
GTTAGCACAAAATCAATGCC+TGG 0.572324 tig0019590:+453 Msa1374850:CDS
TTTGAAGTTAATGTGAGGTG+AGG 0.578455 tig0019590:-152 Msa1374850:intergenic
ATTTGTTGGAAACTTGCTCA+AGG 0.580236 tig0019590:+1891 Msa1374850:CDS
GCCATTGAATCAGTGAGTCA+AGG 0.580492 tig0019590:-381 Msa1374850:intergenic
ATGAGGGCAGGATTATATGA+TGG 0.580751 tig0019590:+1702 Msa1374850:CDS
TTTGCAGCTGACTGAAGACT+GGG 0.581414 tig0019590:+1176 Msa1374850:intron
ATCAGCTTATGCAAGAATGA+TGG 0.584719 tig0019590:+1951 Msa1374850:CDS
AGACTAGAAAAGTTTGTCAC+AGG 0.585130 tig0019590:+2527 Msa1374850:CDS
TTATTGAATTCAGATATGTA+CGG 0.587056 tig0019590:+618 Msa1374850:intron
GAATACTTTAAAATAAAATG+AGG 0.587157 tig0019590:+4025 Msa1374850:three_prime_UTR
AATCAATGCCTGGAACTCGT+TGG 0.587209 tig0019590:+463 Msa1374850:CDS
TTGATTGGTGATAAGTGTGA+TGG 0.588494 tig0019590:+679 Msa1374850:CDS
GGGAGTTCTCACAGAGACTA+CGG 0.589946 tig0019590:+1617 Msa1374850:intron
TTTGTTGGAAACTTGCTCAA+GGG 0.594105 tig0019590:+1892 Msa1374850:CDS
GATGAGCCCTACATGAAACC+TGG 0.594414 tig0019590:+3183 Msa1374850:CDS
ATAATACAGGGCAAGATCAA+GGG 0.598270 tig0019590:+3622 Msa1374850:intron
AAGACTCGCCAAGATGAAGA+AGG 0.601821 tig0019590:+2869 Msa1374850:CDS
TTGCTCAAGGGACAAACAGT+TGG 0.607085 tig0019590:+1904 Msa1374850:CDS
TATTGGCATCAAACCATACT+GGG 0.608430 tig0019590:-3648 Msa1374850:intergenic
ACAAAGTGCAGTGTTGATGA+CGG 0.610784 tig0019590:+4223 Msa1374850:three_prime_UTR
AGCTTGTGTGTGCATACTGA+TGG 0.614699 tig0019590:+3913 Msa1374850:three_prime_UTR
TCTTCCTCATCAAGGCAATG+AGG 0.619889 tig0019590:-4401 Msa1374850:intergenic
TTGAGGCAGATGAGTTCATG+AGG 0.619999 tig0019590:+1685 Msa1374850:CDS
ATACACATTCTTCCTCATCA+AGG 0.621066 tig0019590:-4409 Msa1374850:intergenic
AAGGGCAGCATCCATGGACG+AGG 0.621564 tig0019590:+2678 Msa1374850:CDS
CCTCACTTATAAGGGAGGAG+GGG 0.621943 tig0019590:+4436 Msa1374850:three_prime_UTR
TCCATCCTCACTTATAAGGG+AGG 0.634904 tig0019590:+4431 Msa1374850:three_prime_UTR
CCCCTCCTCCCTTATAAGTG+AGG 0.635596 tig0019590:-4436 Msa1374850:intergenic
GAAAATCCAATGTTTCGCGT+AGG 0.638637 tig0019590:+3057 Msa1374850:CDS
TGAGCCTCATTGCCTTGATG+AGG 0.640353 tig0019590:+4397 Msa1374850:three_prime_UTR
AGCTGCTAGAAGGATAGTTG+AGG 0.641144 tig0019590:+1668 Msa1374850:CDS
ATGGTTTGATGCCAATAGGG+TGG 0.649631 tig0019590:+3654 Msa1374850:CDS
TGAGGCAGATGAGTTCATGA+GGG 0.651617 tig0019590:+1686 Msa1374850:CDS
AGTGATTCGGTGTGAAACAG+TGG 0.663359 tig0019590:-284 Msa1374850:intergenic
TCTGCTTTGAGCAAAGCAGG+AGG 0.664158 tig0019590:+1213 Msa1374850:CDS
CATGGACGAGGTTCTCCAAG+AGG 0.666582 tig0019590:+2690 Msa1374850:CDS
TGTGAGGTGAGGAGGACATG+AGG 0.671366 tig0019590:-141 Msa1374850:intergenic
ATGCTTGGGCATGCAGCTGG+AGG 0.674932 tig0019590:-3703 Msa1374850:intergenic
CATGGAATGATGATGTGTAG+AGG 0.682056 tig0019590:-191 Msa1374850:intergenic
GTGTTTGCAGTGGACTCGTG+AGG 0.684941 tig0019590:+3473 Msa1374850:intron
TGTTTGCAGTGGACTCGTGA+GGG 0.684969 tig0019590:+3474 Msa1374850:intron
TTGTGTGTGCATACTGATGG+TGG 0.686507 tig0019590:+3916 Msa1374850:three_prime_UTR
AGCAATGTGTGGTACTACAA+CGG 0.690341 tig0019590:-3226 Msa1374850:intergenic
GCATACTGATGGTGGCAGTG+TGG 0.695956 tig0019590:+3924 Msa1374850:three_prime_UTR
ATTGAATCAGTGAGTCAAGG+TGG 0.706038 tig0019590:-378 Msa1374850:intergenic
TTGCAGCTGACTGAAGACTG+GGG 0.715483 tig0019590:+1177 Msa1374850:intron
TTGGAAGCAGAAGCAATGTG+TGG 0.717012 tig0019590:-3237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTAAATTAT+AGG + tig0019590:804-823 Msa1374850:intron 0.0%
!!! TTTTAAATTATAGGTTTTTT+TGG + tig0019590:813-832 Msa1374850:intron 10.0%
!!! CTAAATAACTATTTTTTTAT+TGG + tig0019590:901-920 Msa1374850:intron 10.0%
!!! AGTTTAAATTTTAACATAAG+AGG + tig0019590:1079-1098 Msa1374850:intron 15.0%
!!! ATTTACATTTTAAATGTATG+TGG + tig0019590:1373-1392 Msa1374850:intron 15.0%
!! TCATCATAAACTAAATTATT+AGG - tig0019590:2784-2803 Msa1374850:intergenic 15.0%
!! TTAGAATTAAATTAAGTACA+GGG + tig0019590:3321-3340 Msa1374850:intron 15.0%
!!! ATTTTATTTTAAAGTATTCC+TGG - tig0019590:4024-4043 Msa1374850:intergenic 15.0%
!!! GAATACTTTAAAATAAAATG+AGG + tig0019590:4025-4044 Msa1374850:three_prime_UTR 15.0%
!!! TTTTATTTGAAGTTAATGTG+AGG - tig0019590:160-179 None:intergenic 20.0%
!! TCACATTAACTTCAAATAAA+AGG + tig0019590:159-178 Msa1374850:five_prime_UTR 20.0%
!! TTATTGAATTCAGATATGTA+CGG + tig0019590:618-637 Msa1374850:intron 20.0%
!! AATCTTAAGTAAAACAAGAA+AGG - tig0019590:1757-1776 Msa1374850:intergenic 20.0%
!! AGTTGCTAATAAAAATTACT+TGG + tig0019590:2066-2085 Msa1374850:intron 20.0%
!!! ATTCTAAGTTAACAGATTTT+TGG - tig0019590:2374-2393 Msa1374850:intergenic 20.0%
!! ATCCATTTAAACAAATCATA+GGG - tig0019590:2558-2577 Msa1374850:intergenic 20.0%
!! TATCCATTTAAACAAATCAT+AGG - tig0019590:2559-2578 Msa1374850:intergenic 20.0%
!! ATTATTAGGAATGATCAAAT+GGG - tig0019590:2770-2789 Msa1374850:intergenic 20.0%
!! AATTATTAGGAATGATCAAA+TGG - tig0019590:2771-2790 Msa1374850:intergenic 20.0%
!!! ACCATGTGATTTTTTTTATT+AGG + tig0019590:3161-3180 Msa1374850:intron 20.0%
!! TCCTAATAAAAAAAATCACA+TGG - tig0019590:3165-3184 Msa1374850:intergenic 20.0%
!! ATAACTAAAATTGATTACCT+TGG - tig0019590:3259-3278 Msa1374850:intergenic 20.0%
!! CTTAGAATTAAATTAAGTAC+AGG + tig0019590:3320-3339 Msa1374850:intron 20.0%
!!! TGTGAAAAGAATCTTTTTTT+AGG - tig0019590:3413-3432 Msa1374850:intergenic 20.0%
!!! GTTTTATTTGCAACAATATT+TGG - tig0019590:3779-3798 Msa1374850:intergenic 20.0%
!!! TATATTTTATTTCTAATCGC+AGG + tig0019590:3825-3844 Msa1374850:intron 20.0%
!!! TTATAATTTTCAATTGAACC+AGG + tig0019590:4003-4022 Msa1374850:three_prime_UTR 20.0%
!! AAAACAAATTGTTCTTATTG+AGG + tig0019590:4135-4154 Msa1374850:three_prime_UTR 20.0%
!!! AGGAAAAGTGTTAATAATAA+AGG + tig0019590:4200-4219 Msa1374850:three_prime_UTR 20.0%
!!! TTTAGAAGACTTTGACTTTT+TGG - tig0019590:226-245 Msa1374850:intergenic 25.0%
! TCTAAATTCATCCATTTCAT+TGG + tig0019590:240-259 Msa1374850:five_prime_UTR 25.0%
!!! TATGTGGTTTTTTTTACTTC+TGG + tig0019590:839-858 Msa1374850:intron 25.0%
!!! ATGTGGTTTTTTTTACTTCT+GGG + tig0019590:840-859 Msa1374850:intron 25.0%
! ATATTGTGAATCAAGAATAG+AGG + tig0019590:1004-1023 Msa1374850:intron 25.0%
! TATTGTGAATCAAGAATAGA+GGG + tig0019590:1005-1024 Msa1374850:intron 25.0%
! TTTAACATAAAAGCAACTCT+CGG + tig0019590:1118-1137 Msa1374850:intron 25.0%
!!! GAAGTTATTTGTTATAACCT+TGG + tig0019590:1568-1587 Msa1374850:intron 25.0%
! TTCATATCATTCATTGTGTT+TGG + tig0019590:1592-1611 Msa1374850:intron 25.0%
!!! GTTTATTTTTCATACAGATG+AGG - tig0019590:1735-1754 Msa1374850:intergenic 25.0%
!!! CAGTTTTGATTTTGTTTATC+TGG + tig0019590:1865-1884 Msa1374850:intron 25.0%
! AATGCAAAACTGAAATGTAT+GGG - tig0019590:1984-2003 Msa1374850:intergenic 25.0%
! GACTTGGCATAAAATTAAAA+CGG + tig0019590:2101-2120 Msa1374850:intron 25.0%
! AAAAAAAAAAGAGAAGCTAG+TGG + tig0019590:2277-2296 Msa1374850:intron 25.0%
! ATTGTCACGATATTCAAATT+TGG + tig0019590:2327-2346 Msa1374850:intron 25.0%
!!! TAAGTTAACAGATTTTTGGA+AGG - tig0019590:2370-2389 Msa1374850:intergenic 25.0%
! TAATGATATATTCTTATCGC+AGG + tig0019590:2966-2985 Msa1374850:intron 25.0%
!!! GAAAAGAATCTTTTTTTAGG+TGG - tig0019590:3410-3429 Msa1374850:intergenic 25.0%
! AATTTACATTGATCAAACGT+AGG - tig0019590:3565-3584 Msa1374850:intergenic 25.0%
! GTGAAAAATGTTATTACTCA+GGG - tig0019590:3743-3762 Msa1374850:intergenic 25.0%
!! ACTTCAAAAGTACATAAATC+AGG + tig0019590:4180-4199 Msa1374850:three_prime_UTR 25.0%
!! TGATGCATGTAATGAATTTT+AGG + tig0019590:4264-4283 Msa1374850:three_prime_UTR 25.0%
! TTGTAGTTTATTGAGCAATT+GGG + tig0019590:4312-4331 Msa1374850:three_prime_UTR 25.0%
! ATTTAATGGTAGAATGTAGT+AGG + tig0019590:4374-4393 Msa1374850:three_prime_UTR 25.0%
! TATGTTTCTGACCAATGAAA+TGG - tig0019590:254-273 Msa1374850:intergenic 30.0%
AACAGAATGATTGAGTGATT+CGG - tig0019590:300-319 Msa1374850:intergenic 30.0%
AACCAGTTTCAATTCAAGTA+TGG + tig0019590:406-425 Msa1374850:CDS 30.0%
TTCCATACTTGAATTGAAAC+TGG - tig0019590:411-430 Msa1374850:intergenic 30.0%
TTCTTTGTTGAGTCAATCAA+TGG + tig0019590:573-592 Msa1374850:intron 30.0%
GAAGATATCATTGCTTTGAT+TGG + tig0019590:664-683 Msa1374850:CDS 30.0%
!!! TAGGTTTTTTTGGTTGTATG+TGG + tig0019590:823-842 Msa1374850:intron 30.0%
!!! TGTGGTTTTTTTTACTTCTG+GGG + tig0019590:841-860 Msa1374850:intron 30.0%
ATTGTGAATCAAGAATAGAG+GGG + tig0019590:1006-1025 Msa1374850:intron 30.0%
! ATGTACTAAAGTGTTTATCG+AGG + tig0019590:1051-1070 Msa1374850:intron 30.0%
TTAACATAAAAGCAACTCTC+GGG + tig0019590:1119-1138 Msa1374850:intron 30.0%
TGTTAGTGTCAAAATGATAC+AGG - tig0019590:1346-1365 Msa1374850:intergenic 30.0%
TCAAAGTTATCATGTATGCT+TGG + tig0019590:1420-1439 Msa1374850:intron 30.0%
ATGTATATGTGATGCTGAAT+CGG + tig0019590:1490-1509 Msa1374850:intron 30.0%
!! AATAGTGATTAGTCTTGATG+AGG + tig0019590:1546-1565 Msa1374850:intron 30.0%
CAATGAATGATATGAAACCA+AGG - tig0019590:1588-1607 Msa1374850:intergenic 30.0%
TATCATTCATTGTGTTTGGT+AGG + tig0019590:1596-1615 Msa1374850:intron 30.0%
ATCATTCATTGTGTTTGGTA+GGG + tig0019590:1597-1616 Msa1374850:intron 30.0%
CAATGCAAAACTGAAATGTA+TGG - tig0019590:1985-2004 Msa1374850:intergenic 30.0%
!! TTGGTTTTTGAATACTGACT+TGG + tig0019590:2085-2104 Msa1374850:intron 30.0%
!!! ACTTTTCTAGTCTTGTAGAT+TGG - tig0019590:2520-2539 Msa1374850:intergenic 30.0%
!! GTCCCTATGATTTGTTTAAA+TGG + tig0019590:2553-2572 Msa1374850:intron 30.0%
! TTTTTCCTTATTGCAGCATA+TGG + tig0019590:2613-2632 Msa1374850:intron 30.0%
!!! TAAGTGGTTTTATCCAAGAT+AGG - tig0019590:2831-2850 Msa1374850:intergenic 30.0%
ATTCTTATAAACTGCAGTAG+AGG + tig0019590:2994-3013 Msa1374850:CDS 30.0%
!! TGTTAGTGGTTAGTTTACTA+GGG - tig0019590:3378-3397 Msa1374850:intergenic 30.0%
!! ATGTTAGTGGTTAGTTTACT+AGG - tig0019590:3379-3398 Msa1374850:intergenic 30.0%
! GCTCATCAGTTTTACAAAAT+AGG - tig0019590:3596-3615 Msa1374850:intergenic 30.0%
! TGAGCATTTTCATCAAGAAA+TGG - tig0019590:3682-3701 Msa1374850:intergenic 30.0%
! CTTTTGCATTAACAATGCTT+GGG - tig0019590:3720-3739 Msa1374850:intergenic 30.0%
GGTGAAAAATGTTATTACTC+AGG - tig0019590:3744-3763 Msa1374850:intergenic 30.0%
! AAATGAGGAAATTTTGCTTC+TGG + tig0019590:4040-4059 Msa1374850:three_prime_UTR 30.0%
AGTCAAGAAAGAACATGTAA+AGG + tig0019590:4289-4308 Msa1374850:three_prime_UTR 30.0%
GTTGTAGTTTATTGAGCAAT+TGG + tig0019590:4311-4330 Msa1374850:three_prime_UTR 30.0%
!! TCAGATTAGCATCGATTTAA+TGG + tig0019590:4360-4379 Msa1374850:three_prime_UTR 30.0%
! TTTGAAGTTAATGTGAGGTG+AGG - tig0019590:155-174 None:intergenic 35.0%
!! TGATGATGTGTAGAGGATTT+TGG - tig0019590:187-206 Msa1374850:intergenic 35.0%
!!! ACTTTTTGGTTGCTTGATCA+TGG - tig0019590:212-231 Msa1374850:intergenic 35.0%
! GATGAACGAACTTTTCGTAA+CGG - tig0019590:357-376 Msa1374850:intergenic 35.0%
ATTCAAGTATGGAACCCAAA+TGG + tig0019590:417-436 Msa1374850:CDS 35.0%
! CGACTCTGTATTTTCCATTT+GGG - tig0019590:434-453 Msa1374850:intergenic 35.0%
! ACGACTCTGTATTTTCCATT+TGG - tig0019590:435-454 Msa1374850:intergenic 35.0%
! TTGATTGGTGATAAGTGTGA+TGG + tig0019590:679-698 Msa1374850:CDS 35.0%
! GATAAGTGTGATGGAGTTAT+TGG + tig0019590:688-707 Msa1374850:CDS 35.0%
TTGTGAATCAAGAATAGAGG+GGG + tig0019590:1007-1026 Msa1374850:intron 35.0%
AGGCAAAGCTTTCAGTAATA+TGG + tig0019590:1233-1252 Msa1374850:CDS 35.0%
GTCAATGCTGCAAACAAATA+TGG + tig0019590:1279-1298 Msa1374850:CDS 35.0%
!! AACAAATATGGTGTTGCTGT+TGG + tig0019590:1291-1310 Msa1374850:CDS 35.0%
GAATGAAAGAGAAAGCTTAC+AGG - tig0019590:1324-1343 Msa1374850:intergenic 35.0%
TTATCATGTATGCTTGGATG+AGG + tig0019590:1426-1445 Msa1374850:intron 35.0%
TATCATGTATGCTTGGATGA+GGG + tig0019590:1427-1446 Msa1374850:intron 35.0%
TGCTGAATCGGTTGTAATTA+TGG + tig0019590:1502-1521 Msa1374850:intron 35.0%
TGTTTATCTGGCAGATTTGT+TGG + tig0019590:1877-1896 Msa1374850:intron 35.0%
! ATTTGTTGGAAACTTGCTCA+AGG + tig0019590:1891-1910 Msa1374850:CDS 35.0%
! TTTGTTGGAAACTTGCTCAA+GGG + tig0019590:1892-1911 Msa1374850:CDS 35.0%
TTGCATAAGCTGATCCAATA+CGG - tig0019590:1945-1964 Msa1374850:intergenic 35.0%
ATCAGCTTATGCAAGAATGA+TGG + tig0019590:1951-1970 Msa1374850:CDS 35.0%
CAATCAAGTGAACCTGAAAT+GGG - tig0019590:2021-2040 Msa1374850:intergenic 35.0%
TCAATCAAGTGAACCTGAAA+TGG - tig0019590:2022-2041 Msa1374850:intergenic 35.0%
ATCCTACTTGAAAGTTCTCT+AGG + tig0019590:2129-2148 Msa1374850:intron 35.0%
CTCTAGGTCACATAATATCT+AGG + tig0019590:2145-2164 Msa1374850:intron 35.0%
TTCAAATTTGGCCAAGTTAC+TGG + tig0019590:2339-2358 Msa1374850:intron 35.0%
! TGATTCTTTTCTGCTGTATC+AGG + tig0019590:2454-2473 Msa1374850:intron 35.0%
AGACTAGAAAAGTTTGTCAC+AGG + tig0019590:2527-2546 Msa1374850:CDS 35.0%
AGCATATGGTGCTTTCTTAA+AGG + tig0019590:2627-2646 Msa1374850:intron 35.0%
AAACACCAGTAACTTGGAAA+AGG + tig0019590:2659-2678 Msa1374850:CDS 35.0%
AACACCAGTAACTTGGAAAA+GGG + tig0019590:2660-2679 Msa1374850:CDS 35.0%
TTCTTACTATATCTGCCTCT+TGG - tig0019590:2708-2727 Msa1374850:intergenic 35.0%
!! GATTAGTCTTCATCCTATCT+TGG + tig0019590:2815-2834 Msa1374850:intron 35.0%
AACTCTAACCTTCTTCATCT+TGG - tig0019590:2880-2899 Msa1374850:intergenic 35.0%
ATGAAGAAGGTTAGAGTTCA+AGG + tig0019590:2882-2901 Msa1374850:intron 35.0%
TGAAGAAGGTTAGAGTTCAA+GGG + tig0019590:2883-2902 Msa1374850:intron 35.0%
AAATTACTTATGGCATCACG+TGG + tig0019590:2924-2943 Msa1374850:intron 35.0%
AGTGCAACTTCATCAATAAC+AGG - tig0019590:3021-3040 Msa1374850:intergenic 35.0%
TATTGATGAAGTTGCACTTG+TGG + tig0019590:3023-3042 Msa1374850:CDS 35.0%
CAATTACCTCAAACACATCA+AGG - tig0019590:3083-3102 Msa1374850:intergenic 35.0%
! AATTGAACCTTGTCTGCTTT+TGG + tig0019590:3098-3117 Msa1374850:intron 35.0%
TTGTTATCCAAAAGCAGACA+AGG - tig0019590:3108-3127 Msa1374850:intergenic 35.0%
AATCACATGGTGTCTTGAAA+AGG - tig0019590:3152-3171 Msa1374850:intergenic 35.0%
ATGAGCCTCCTTATAATACA+GGG + tig0019590:3610-3629 Msa1374850:intron 35.0%
TGATCTTGCCCTGTATTATA+AGG - tig0019590:3621-3640 Msa1374850:intergenic 35.0%
TATAATACAGGGCAAGATCA+AGG + tig0019590:3621-3640 Msa1374850:intron 35.0%
ATAATACAGGGCAAGATCAA+GGG + tig0019590:3622-3641 Msa1374850:intron 35.0%
TATTGGCATCAAACCATACT+GGG - tig0019590:3651-3670 Msa1374850:intergenic 35.0%
AGTATGGTTTGATGCCAATA+GGG + tig0019590:3651-3670 Msa1374850:CDS 35.0%
! GCTTTTGCATTAACAATGCT+TGG - tig0019590:3721-3740 Msa1374850:intergenic 35.0%
! ACATTTTTCACCCTTTCACT+TGG + tig0019590:3752-3771 Msa1374850:intron 35.0%
! CATTTTTCACCCTTTCACTT+GGG + tig0019590:3753-3772 Msa1374850:intron 35.0%
AATATTTGGCCCAAGTGAAA+GGG - tig0019590:3765-3784 Msa1374850:intergenic 35.0%
!! ATACACTACAGCTTTGAAAC+TGG - tig0019590:3855-3874 Msa1374850:intergenic 35.0%
CTTGCATTCTTCTGATCTAA+TGG - tig0019590:4089-4108 Msa1374850:intergenic 35.0%
ATACACATTCTTCCTCATCA+AGG - tig0019590:4412-4431 Msa1374850:intergenic 35.0%
TGTATCCATCCTCACTTATA+AGG + tig0019590:4427-4446 Msa1374850:three_prime_UTR 35.0%
GTATCCATCCTCACTTATAA+GGG + tig0019590:4428-4447 Msa1374850:three_prime_UTR 35.0%
! CATGGAATGATGATGTGTAG+AGG - tig0019590:194-213 Msa1374850:intergenic 40.0%
ATTGAATCAGTGAGTCAAGG+TGG - tig0019590:381-400 Msa1374850:intergenic 40.0%
!! ACCTTGACTCACTGATTCAA+TGG + tig0019590:380-399 Msa1374850:exon 40.0%
GTTAGCACAAAATCAATGCC+TGG + tig0019590:453-472 Msa1374850:CDS 40.0%
! CTAAAGTGTTTATCGAGGAG+AGG + tig0019590:1056-1075 Msa1374850:intron 40.0%
GCTTTCAGTAATATGGCTGT+TGG + tig0019590:1240-1259 Msa1374850:CDS 40.0%
GACTTGTACTGCTAAACCTT+CGG + tig0019590:1459-1478 Msa1374850:intron 40.0%
ACTTGTACTGCTAAACCTTC+GGG + tig0019590:1460-1479 Msa1374850:intron 40.0%
ATATACATGCATGTACCCGA+AGG - tig0019590:1478-1497 Msa1374850:intergenic 40.0%
ATGAGGGCAGGATTATATGA+TGG + tig0019590:1702-1721 Msa1374850:CDS 40.0%
TGTGCTATACACTCTTCTGA+AGG + tig0019590:1833-1852 Msa1374850:intron 40.0%
!! GGACAAACAGTTGGTGTTAT+CGG + tig0019590:1913-1932 Msa1374850:CDS 40.0%
ATGTCTATCCATCCCATTTC+AGG + tig0019590:2006-2025 Msa1374850:intron 40.0%
! GACCTAGAGAACTTTCAAGT+AGG - tig0019590:2134-2153 Msa1374850:intergenic 40.0%
!! TTTCTGCTGTATCAGGTTGA+AGG + tig0019590:2461-2480 Msa1374850:intron 40.0%
!! TTCTGCTGTATCAGGTTGAA+GGG + tig0019590:2462-2481 Msa1374850:intron 40.0%
GGTAGAGATCGAAGTATATC+AGG - tig0019590:2499-2518 Msa1374850:intergenic 40.0%
AAGCACCATATGCTGCAATA+AGG - tig0019590:2621-2640 Msa1374850:intergenic 40.0%
GGTGCTTTCTTAAAGGCAAA+TGG + tig0019590:2634-2653 Msa1374850:CDS 40.0%
ATGGTGAAACACCAGTAACT+TGG + tig0019590:2653-2672 Msa1374850:CDS 40.0%
CAGCTACAAAGTTTAACTCG+AGG - tig0019590:2738-2757 Msa1374850:intergenic 40.0%
GAAAATCCAATGTTTCGCGT+AGG + tig0019590:3057-3076 Msa1374850:CDS 40.0%
!! GTCTGCTTTTGGATAACAAC+AGG + tig0019590:3109-3128 Msa1374850:intron 40.0%
AGCAATGTGTGGTACTACAA+CGG - tig0019590:3229-3248 Msa1374850:intergenic 40.0%
! GTTAGTTTACTAGGGAGAAG+GGG - tig0019590:3370-3389 Msa1374850:intergenic 40.0%
!! GGTTAGTTTACTAGGGAGAA+GGG - tig0019590:3371-3390 Msa1374850:intergenic 40.0%
!! TGGTTAGTTTACTAGGGAGA+AGG - tig0019590:3372-3391 Msa1374850:intergenic 40.0%
GGTGGATATGCAAATGTTAG+TGG - tig0019590:3392-3411 Msa1374850:intergenic 40.0%
TTTCATGCATGTGTTTGCAG+TGG + tig0019590:3463-3482 Msa1374850:intron 40.0%
ATCCAAGATGGAGAGACATA+GGG - tig0019590:3537-3556 Msa1374850:intergenic 40.0%
AATCCAAGATGGAGAGACAT+AGG - tig0019590:3538-3557 Msa1374850:intergenic 40.0%
ACGTAGGAATGAATCCAAGA+TGG - tig0019590:3549-3568 Msa1374850:intergenic 40.0%
GATGAGCCTCCTTATAATAC+AGG + tig0019590:3609-3628 Msa1374850:intron 40.0%
TCTTGCCCTGTATTATAAGG+AGG - tig0019590:3618-3637 Msa1374850:intergenic 40.0%
CTATTGGCATCAAACCATAC+TGG - tig0019590:3652-3671 Msa1374850:intergenic 40.0%
CAGTATGGTTTGATGCCAAT+AGG + tig0019590:3650-3669 Msa1374850:CDS 40.0%
CAATATTTGGCCCAAGTGAA+AGG - tig0019590:3766-3785 Msa1374850:intergenic 40.0%
AAAGCTGTAGTGTATGCGTA+CGG + tig0019590:3860-3879 Msa1374850:exon 40.0%
! TATGCACACACAAGCTTTGA+AGG - tig0019590:3909-3928 Msa1374850:intergenic 40.0%
!! ACAAAGTGCAGTGTTGATGA+CGG + tig0019590:4223-4242 Msa1374850:three_prime_UTR 40.0%
TATTGAGCAATTGGGAGAGT+TGG + tig0019590:4320-4339 Msa1374850:three_prime_UTR 40.0%
ATTGAGCAATTGGGAGAGTT+GGG + tig0019590:4321-4340 Msa1374850:three_prime_UTR 40.0%
GAAGTTAATGTGAGGTGAGG+AGG - tig0019590:152-171 None:intergenic 45.0%
!! AGTGATTCGGTGTGAAACAG+TGG - tig0019590:287-306 Msa1374850:intergenic 45.0%
GCCATTGAATCAGTGAGTCA+AGG - tig0019590:384-403 Msa1374850:intergenic 45.0%
AATCAATGCCTGGAACTCGT+TGG + tig0019590:463-482 Msa1374850:CDS 45.0%
AGATTGATCCAACGAGTTCC+AGG - tig0019590:474-493 Msa1374850:intergenic 45.0%
! GTGTGATGGAGTTATTGGAC+AGG + tig0019590:693-712 Msa1374850:CDS 45.0%
ATAAAAGCAACTCTCGGGAG+AGG + tig0019590:1124-1143 Msa1374850:intron 45.0%
TAAAAGCAACTCTCGGGAGA+GGG + tig0019590:1125-1144 Msa1374850:intron 45.0%
! TTTTGCAGCTGACTGAAGAC+TGG + tig0019590:1175-1194 Msa1374850:intron 45.0%
TTTGCAGCTGACTGAAGACT+GGG + tig0019590:1176-1195 Msa1374850:intron 45.0%
! TTCTCTGCTTTGAGCAAAGC+AGG + tig0019590:1210-1229 Msa1374850:CDS 45.0%
AGCTGCTAGAAGGATAGTTG+AGG + tig0019590:1668-1687 Msa1374850:CDS 45.0%
TTGAGGCAGATGAGTTCATG+AGG + tig0019590:1685-1704 Msa1374850:CDS 45.0%
TGAGGCAGATGAGTTCATGA+GGG + tig0019590:1686-1705 Msa1374850:CDS 45.0%
! CTATACACTCTTCTGAAGGC+TGG + tig0019590:1837-1856 Msa1374850:intron 45.0%
TTGCTCAAGGGACAAACAGT+TGG + tig0019590:1904-1923 Msa1374850:CDS 45.0%
CAAGTGAACCTGAAATGGGA+TGG - tig0019590:2017-2036 Msa1374850:intergenic 45.0%
AAGACTCGCCAAGATGAAGA+AGG + tig0019590:2869-2888 Msa1374850:CDS 45.0%
CACATGGTGTCTTGAAAAGG+TGG - tig0019590:3149-3168 Msa1374850:intergenic 45.0%
GCAAGTCCAGGTTTCATGTA+GGG - tig0019590:3192-3211 Msa1374850:intergenic 45.0%
TGCAAGTCCAGGTTTCATGT+AGG - tig0019590:3193-3212 Msa1374850:intergenic 45.0%
TTCTTCAACTCTGCAAGTCC+AGG - tig0019590:3204-3223 Msa1374850:intergenic 45.0%
TTGGAAGCAGAAGCAATGTG+TGG - tig0019590:3240-3259 Msa1374850:intergenic 45.0%
ACACATTGCTTCTGCTTCCA+AGG + tig0019590:3239-3258 Msa1374850:CDS 45.0%
ATCCCTATGTCTCTCCATCT+TGG + tig0019590:3532-3551 Msa1374850:intron 45.0%
ATGGTTTGATGCCAATAGGG+TGG + tig0019590:3654-3673 Msa1374850:CDS 45.0%
AAGAAATGGCTCCACCCTAT+TGG - tig0019590:3668-3687 Msa1374850:intergenic 45.0%
AAGCTGTAGTGTATGCGTAC+GGG + tig0019590:3861-3880 Msa1374850:exon 45.0%
!! CAAGCTTTGAAGGCTCTTGT+AGG - tig0019590:3899-3918 Msa1374850:intergenic 45.0%
AGCTTGTGTGTGCATACTGA+TGG + tig0019590:3913-3932 Msa1374850:three_prime_UTR 45.0%
TTGTGTGTGCATACTGATGG+TGG + tig0019590:3916-3935 Msa1374850:three_prime_UTR 45.0%
TCTTCCTCATCAAGGCAATG+AGG - tig0019590:4404-4423 Msa1374850:intergenic 45.0%
TCCATCCTCACTTATAAGGG+AGG + tig0019590:4431-4450 Msa1374850:three_prime_UTR 45.0%
TCCTCCCTTATAAGTGAGGA+TGG - tig0019590:4435-4454 Msa1374850:intergenic 45.0%
ATCCTCACTTATAAGGGAGG+AGG + tig0019590:4434-4453 Msa1374850:three_prime_UTR 45.0%
TCCTCACTTATAAGGGAGGA+GGG + tig0019590:4435-4454 Msa1374850:three_prime_UTR 45.0%
!! TTATATATTTAAATTACTTA+TGG + tig0019590:2914-2933 Msa1374850:intron 5.0%
TTGCAGCTGACTGAAGACTG+GGG + tig0019590:1177-1196 Msa1374850:intron 50.0%
! TCTGCTTTGAGCAAAGCAGG+AGG + tig0019590:1213-1232 Msa1374850:CDS 50.0%
GGGAGTTCTCACAGAGACTA+CGG + tig0019590:1617-1636 Msa1374850:intron 50.0%
!! GCTTGCAGCTTCACTGACTT+TGG + tig0019590:1644-1663 Msa1374850:CDS 50.0%
TGACTTTGGCAGCTGCTAGA+AGG + tig0019590:1658-1677 Msa1374850:CDS 50.0%
GGGCAGGATTATATGATGGC+TGG + tig0019590:1706-1725 Msa1374850:CDS 50.0%
!! ACAGTTGGTGTTATCGGAGC+TGG + tig0019590:1919-1938 Msa1374850:CDS 50.0%
GGAAGGCTTGTCCAGTAACT+TGG - tig0019590:2353-2372 Msa1374850:intergenic 50.0%
! GCTGCCCTTTTCCAAGTTAC+TGG - tig0019590:2667-2686 Msa1374850:intergenic 50.0%
TTGGAAAAGGGCAGCATCCA+TGG + tig0019590:2672-2691 Msa1374850:CDS 50.0%
CTTGTTGACGAGGTGGTAAG+TGG - tig0019590:2847-2866 Msa1374850:intergenic 50.0%
CACTTACCACCTCGTCAACA+AGG + tig0019590:2845-2864 Msa1374850:CDS 50.0%
GTCTTTCCTTGTTGACGAGG+TGG - tig0019590:2854-2873 Msa1374850:intergenic 50.0%
CGAGTCTTTCCTTGTTGACG+AGG - tig0019590:2857-2876 Msa1374850:intergenic 50.0%
TCAAGGCCTACGCGAAACAT+TGG - tig0019590:3066-3085 Msa1374850:intergenic 50.0%
CGTAGGCCTTGATGTGTTTG+AGG + tig0019590:3074-3093 Msa1374850:CDS 50.0%
GATGAGCCCTACATGAAACC+TGG + tig0019590:3183-3202 Msa1374850:CDS 50.0%
! TGTTTGCAGTGGACTCGTGA+GGG + tig0019590:3474-3493 Msa1374850:intron 50.0%
!! GCTAGCAGCTCTAAATGTGC+TGG + tig0019590:3506-3525 Msa1374850:CDS 50.0%
AGATCAAGGGCTACCCAGTA+TGG + tig0019590:3635-3654 Msa1374850:CDS 50.0%
TGAGCCTCATTGCCTTGATG+AGG + tig0019590:4397-4416 Msa1374850:three_prime_UTR 50.0%
CCTCACTTATAAGGGAGGAG+GGG + tig0019590:4436-4455 Msa1374850:three_prime_UTR 50.0%
TGTGAGGTGAGGAGGACATG+AGG - tig0019590:144-163 None:intergenic 55.0%
GCAGATGAGTTCATGAGGGC+AGG + tig0019590:1690-1709 Msa1374850:CDS 55.0%
GTTATCGGAGCTGGCCGTAT+TGG + tig0019590:1928-1947 Msa1374850:CDS 55.0%
CTCTTGGAGAACCTCGTCCA+TGG - tig0019590:2692-2711 Msa1374850:intergenic 55.0%
CATGGACGAGGTTCTCCAAG+AGG + tig0019590:2690-2709 Msa1374850:CDS 55.0%
! GTCTTTTCATGTCCCCGCAG+TGG + tig0019590:3285-3304 Msa1374850:intron 55.0%
TTCATGTCCCCGCAGTGGTA+TGG + tig0019590:3290-3309 Msa1374850:intron 55.0%
TCATGTCCCCGCAGTGGTAT+GGG + tig0019590:3291-3310 Msa1374850:intron 55.0%
AGTCCCAACCCATACCACTG+CGG - tig0019590:3302-3321 Msa1374850:intergenic 55.0%
! GTGTTTGCAGTGGACTCGTG+AGG + tig0019590:3473-3492 Msa1374850:intron 55.0%
ACAATGCTTGGGCATGCAGC+TGG - tig0019590:3709-3728 Msa1374850:intergenic 55.0%
!! GCATACTGATGGTGGCAGTG+TGG + tig0019590:3924-3943 Msa1374850:three_prime_UTR 55.0%
CCCCTCCTCCCTTATAAGTG+AGG - tig0019590:4439-4458 Msa1374850:intergenic 55.0%
AAGGGCAGCATCCATGGACG+AGG + tig0019590:2678-2697 Msa1374850:CDS 60.0%
TCCCCGCAGTGGTATGGGTT+GGG + tig0019590:3296-3315 Msa1374850:intron 60.0%
TCCCAACCCATACCACTGCG+GGG - tig0019590:3300-3319 Msa1374850:intergenic 60.0%
GTCCCAACCCATACCACTGC+GGG - tig0019590:3301-3320 Msa1374850:intergenic 60.0%
! GCAGTGGACTCGTGAGGGAA+TGG + tig0019590:3479-3498 Msa1374850:intron 60.0%
ATGCTTGGGCATGCAGCTGG+AGG - tig0019590:3706-3725 Msa1374850:intergenic 60.0%
GTCCCCGCAGTGGTATGGGT+TGG + tig0019590:3295-3314 Msa1374850:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019590 gene 132 4478 132 ID=Msa1374850;Name=Msa1374850
tig0019590 mRNA 132 4478 132 ID=Msa1374850-mRNA-1;Parent=Msa1374850;Name=Msa1374850-mRNA-1;_AED=0.07;_eAED=0.07;_QI=267|1|1|1|1|1|13|609|386
tig0019590 exon 132 521 132 ID=Msa1374850-mRNA-1:exon:4146;Parent=Msa1374850-mRNA-1
tig0019590 exon 631 714 631 ID=Msa1374850-mRNA-1:exon:4147;Parent=Msa1374850-mRNA-1
tig0019590 exon 1183 1323 1183 ID=Msa1374850-mRNA-1:exon:4148;Parent=Msa1374850-mRNA-1
tig0019590 exon 1618 1739 1618 ID=Msa1374850-mRNA-1:exon:4149;Parent=Msa1374850-mRNA-1
tig0019590 exon 1891 1972 1891 ID=Msa1374850-mRNA-1:exon:4150;Parent=Msa1374850-mRNA-1
tig0019590 exon 2476 2548 2476 ID=Msa1374850-mRNA-1:exon:4151;Parent=Msa1374850-mRNA-1
tig0019590 exon 2629 2720 2629 ID=Msa1374850-mRNA-1:exon:4152;Parent=Msa1374850-mRNA-1
tig0019590 exon 2816 2890 2816 ID=Msa1374850-mRNA-1:exon:4153;Parent=Msa1374850-mRNA-1
tig0019590 exon 2988 3095 2988 ID=Msa1374850-mRNA-1:exon:4154;Parent=Msa1374850-mRNA-1
tig0019590 exon 3183 3260 3183 ID=Msa1374850-mRNA-1:exon:4155;Parent=Msa1374850-mRNA-1
tig0019590 exon 3483 3527 3483 ID=Msa1374850-mRNA-1:exon:4156;Parent=Msa1374850-mRNA-1
tig0019590 exon 3631 3745 3631 ID=Msa1374850-mRNA-1:exon:4157;Parent=Msa1374850-mRNA-1
tig0019590 exon 3847 4478 3847 ID=Msa1374850-mRNA-1:exon:4158;Parent=Msa1374850-mRNA-1
tig0019590 five_prime_UTR 132 398 132 ID=Msa1374850-mRNA-1:five_prime_utr;Parent=Msa1374850-mRNA-1
tig0019590 CDS 399 521 399 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 631 714 631 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 1183 1323 1183 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 1618 1739 1618 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 1891 1972 1891 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 2476 2548 2476 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 2629 2720 2629 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 2816 2890 2816 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 2988 3095 2988 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 3183 3260 3183 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 3483 3527 3483 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 3631 3745 3631 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 CDS 3847 3869 3847 ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590 three_prime_UTR 3870 4478 3870 ID=Msa1374850-mRNA-1:three_prime_utr;Parent=Msa1374850-mRNA-1
Gene Sequence

>Msa1374850

ATGGCTAAACCAGTTTCAATTCAAGTATGGAACCCAAATGGAAAATACAGAGTCGTTAGCACAAAATCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAACAAGATTGTCGTCTTGAAATATGTACGGAGAAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCAGGAGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTGATATACTTCGATCTCTACCAATCTACAAGACTAGAAAAGTTTGTCACAGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>Msa1374850

MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*