AlfalfaGEDB | Msa1374850

M. sativa cultivar zhongmu-4 / Msa1374850

KEGG: K15893
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701
PFAM: PF00389.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374850	XP_013470313.1	99.482	386	2	0	1	386	1	386	0.0	792

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374850	sp\|P13443\|DHGY_CUCSA	90.501	379	36	0	1	379	1	379	0.0	699

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374850	A0A072VRS6	99.482	386	2	0	1	386	1	386	0.0	792

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1374850	0.803101	4.094328e-49	-8.615850e-47
Msa0000220	Msa1374850	0.885483	7.820054e-72	-8.615850e-47
Msa0000780	Msa1374850	0.825137	5.522545e-54	-8.615850e-47
Msa0001420	Msa1374850	0.856016	4.276182e-62	-8.615850e-47
Msa0001460	Msa1374850	0.843817	1.109393e-58	-8.615850e-47
Msa0001510	Msa1374850	0.864812	9.284556e-65	-8.615850e-47
Msa0001540	Msa1374850	0.898706	4.080446e-77	-8.615850e-47
Msa0002060	Msa1374850	0.840363	9.097750e-58	-8.615850e-47
Msa0002690	Msa1374850	0.818030	2.424667e-52	-8.615850e-47
Msa0002700	Msa1374850	0.814830	1.261811e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374850	MtrunA17_Chr1g0210971	99.482	386	2	0	1	386	1	386	0.0	792
Msa1374850	MtrunA17_Chr4g0004681	33.448	290	166	5	60	349	43	305	1.63e-39	142
Msa1374850	MtrunA17_Chr4g0004711	33.798	287	160	7	66	349	49	308	5.44e-39	141
Msa1374850	MtrunA17_Chr4g0004721	32.990	291	169	6	60	349	44	309	1.69e-37	137
Msa1374850	MtrunA17_Chr4g0000511	34.228	298	173	7	50	346	117	392	3.53e-35	136
Msa1374850	MtrunA17_Chr1g0208141	33.564	289	162	8	63	346	96	359	1.30e-29	120
Msa1374850	MtrunA17_Chr4g0004741	32.990	291	169	7	60	349	43	308	5.57e-27	109
Msa1374850	MtrunA17_Chr8g0351141	27.344	256	166	2	94	349	86	321	6.98e-27	109
Msa1374850	MtrunA17_Chr8g0351121	27.419	248	157	4	94	340	120	345	1.33e-26	108
Msa1374850	MtrunA17_Chr8g0351111	28.571	259	151	8	94	347	83	312	2.41e-26	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374850	AT1G68010.1	88.860	386	43	0	1	386	1	386	0.0	697
Msa1374850	AT1G68010.2	88.630	387	43	1	1	386	1	387	0.0	692
Msa1374850	AT1G68010.3	90.909	341	31	0	1	341	1	341	0.0	625
Msa1374850	AT4G34200.1	34.737	285	164	6	63	346	102	365	7.37e-34	132
Msa1374850	AT1G17745.1	32.558	344	192	11	10	346	76	386	1.41e-33	132
Msa1374850	AT1G79870.1	31.373	306	172	8	45	346	34	305	7.87e-33	125
Msa1374850	AT3G19480.1	33.221	298	176	7	50	346	75	350	1.71e-30	123
Msa1374850	AT1G17745.2	30.435	368	195	11	10	346	76	413	6.95e-29	119
Msa1374850	AT1G79870.2	29.180	305	161	7	45	346	34	286	6.75e-27	108
Msa1374850	AT1G12550.1	27.413	259	163	5	94	350	82	317	8.61e-26	106

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Find 132 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATTGTTCTTATTG+AGG	0.414112	tig0019590:+4135	Msa1374850:three_prime_UTR
AAACACCAGTAACTTGGAAA+AGG	0.465743	tig0019590:+2659	Msa1374850:CDS
AAAGCTGTAGTGTATGCGTA+CGG	0.544002	tig0019590:+3860	Msa1374850:exon
AACAAATATGGTGTTGCTGT+TGG	0.490286	tig0019590:+1291	Msa1374850:CDS
AACACCAGTAACTTGGAAAA+GGG	0.538959	tig0019590:+2660	Msa1374850:CDS
AACAGAATGATTGAGTGATT+CGG	0.516366	tig0019590:-297	Msa1374850:intergenic
AACCAGTTTCAATTCAAGTA+TGG	0.311416	tig0019590:+406	Msa1374850:CDS
AACTCTAACCTTCTTCATCT+TGG	0.389875	tig0019590:-2877	Msa1374850:intergenic
AAGAAATGGCTCCACCCTAT+TGG	0.407299	tig0019590:-3665	Msa1374850:intergenic
AAGACTCGCCAAGATGAAGA+AGG	0.601821	tig0019590:+2869	Msa1374850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGAATGATTGAGTGATT+CGG	-	tig0019590:300-319	Msa1374850:intergenic	30.0%
AACCAGTTTCAATTCAAGTA+TGG	+	tig0019590:406-425	Msa1374850:CDS	30.0%
TTCCATACTTGAATTGAAAC+TGG	-	tig0019590:411-430	Msa1374850:intergenic	30.0%
TTCTTTGTTGAGTCAATCAA+TGG	+	tig0019590:573-592	Msa1374850:intron	30.0%
GAAGATATCATTGCTTTGAT+TGG	+	tig0019590:664-683	Msa1374850:CDS	30.0%
ATTGTGAATCAAGAATAGAG+GGG	+	tig0019590:1006-1025	Msa1374850:intron	30.0%
TTAACATAAAAGCAACTCTC+GGG	+	tig0019590:1119-1138	Msa1374850:intron	30.0%
TGTTAGTGTCAAAATGATAC+AGG	-	tig0019590:1346-1365	Msa1374850:intergenic	30.0%
TCAAAGTTATCATGTATGCT+TGG	+	tig0019590:1420-1439	Msa1374850:intron	30.0%
ATGTATATGTGATGCTGAAT+CGG	+	tig0019590:1490-1509	Msa1374850:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019590	gene	132	4478	132	ID=Msa1374850;Name=Msa1374850
tig0019590	mRNA	132	4478	132	ID=Msa1374850-mRNA-1;Parent=Msa1374850;Name=Msa1374850-mRNA-1;_AED=0.07;_eAED=0.07;_QI=267\|1\|1\|1\|1\|1\|13\|609\|386
tig0019590	exon	132	521	132	ID=Msa1374850-mRNA-1:exon:4146;Parent=Msa1374850-mRNA-1
tig0019590	exon	631	714	631	ID=Msa1374850-mRNA-1:exon:4147;Parent=Msa1374850-mRNA-1
tig0019590	exon	1183	1323	1183	ID=Msa1374850-mRNA-1:exon:4148;Parent=Msa1374850-mRNA-1
tig0019590	exon	1618	1739	1618	ID=Msa1374850-mRNA-1:exon:4149;Parent=Msa1374850-mRNA-1
tig0019590	exon	1891	1972	1891	ID=Msa1374850-mRNA-1:exon:4150;Parent=Msa1374850-mRNA-1
tig0019590	exon	2476	2548	2476	ID=Msa1374850-mRNA-1:exon:4151;Parent=Msa1374850-mRNA-1
tig0019590	exon	2629	2720	2629	ID=Msa1374850-mRNA-1:exon:4152;Parent=Msa1374850-mRNA-1
tig0019590	exon	2816	2890	2816	ID=Msa1374850-mRNA-1:exon:4153;Parent=Msa1374850-mRNA-1
tig0019590	exon	2988	3095	2988	ID=Msa1374850-mRNA-1:exon:4154;Parent=Msa1374850-mRNA-1
tig0019590	exon	3183	3260	3183	ID=Msa1374850-mRNA-1:exon:4155;Parent=Msa1374850-mRNA-1
tig0019590	exon	3483	3527	3483	ID=Msa1374850-mRNA-1:exon:4156;Parent=Msa1374850-mRNA-1
tig0019590	exon	3631	3745	3631	ID=Msa1374850-mRNA-1:exon:4157;Parent=Msa1374850-mRNA-1
tig0019590	exon	3847	4478	3847	ID=Msa1374850-mRNA-1:exon:4158;Parent=Msa1374850-mRNA-1
tig0019590	five_prime_UTR	132	398	132	ID=Msa1374850-mRNA-1:five_prime_utr;Parent=Msa1374850-mRNA-1
tig0019590	CDS	399	521	399	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	631	714	631	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	1183	1323	1183	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	1618	1739	1618	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	1891	1972	1891	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	2476	2548	2476	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	2629	2720	2629	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	2816	2890	2816	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	2988	3095	2988	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	3183	3260	3183	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	3483	3527	3483	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	3631	3745	3631	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	CDS	3847	3869	3847	ID=Msa1374850-mRNA-1:cds;Parent=Msa1374850-mRNA-1
tig0019590	three_prime_UTR	3870	4478	3870	ID=Msa1374850-mRNA-1:three_prime_utr;Parent=Msa1374850-mRNA-1

Gene Sequence

>Msa1374850

ATGGCTAAACCAGTTTCAATTCAAGTATGGAACCCAAATGGAAAATACAGAGTCGTTAGCACAAAATCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAACAAGATTGTCGTCTTGAAATATGTACGGAGAAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCAGGAGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTGATATACTTCGATCTCTACCAATCTACAAGACTAGAAAAGTTTGTCACAGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>Msa1374850

MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*