AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455200 MtrunA17_Chr3g0101881 95.213 188 9 0 1 188 1 188 1.54e-115 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455200 AT3G13120.3 64.398 191 65 1 1 188 1 191 5.54e-75 224
Msa0455200 AT3G13120.2 64.398 191 65 1 1 188 1 191 5.54e-75 224
Msa0455200 AT3G13120.1 64.398 191 65 1 1 188 1 191 5.54e-75 224

Find 40 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTTGTGCTTTGTTTC+TGG 0.060318 3_3:-47689642 Msa0455200:CDS
ATAAATCCATGTGCATAATT+TGG 0.219282 3_3:+47686354 None:intergenic
GACACAGTGAATTCGCTTCT+TGG 0.315569 3_3:+47686798 None:intergenic
ACCTCAGAATTCAAAACTTC+AGG 0.326023 3_3:+47689558 None:intergenic
TGCATCCAGTATCTGCTTGC+AGG 0.346889 3_3:+47686867 None:intergenic
GCTCTAAATATATTTGCTTC+AGG 0.347187 3_3:-47686626 Msa0455200:exon
TGTGTACGTGTGGAGATTTA+AGG 0.348074 3_3:+47686776 None:intergenic
AAGCACAAAGATTGAAGCTT+TGG 0.358455 3_3:+47689651 None:intergenic
GGATTCCTGCAAGCAGATAC+TGG 0.366808 3_3:-47686872 Msa0455200:CDS
TATGCAAATATCTATGTAAC+AGG 0.367005 3_3:+47686430 None:intergenic
AGATAACAATGGTGAAGAAT+TGG 0.371117 3_3:+47689680 None:intergenic
GAGCCTAGATGACAACATAA+TGG 0.380501 3_3:+47686467 None:intergenic
ACAACAGTTGATAACTTAAG+AGG 0.390677 3_3:+47689591 None:intergenic
CTTCAGAGAGTTTGTTTCAA+TGG 0.392816 3_3:-47689751 Msa0455200:exon
TTCTTGGTTGGTAAAGGAAC+AGG 0.402200 3_3:+47686814 None:intergenic
AGACTTACATTACATTGAAT+AGG 0.410551 3_3:+47686406 None:intergenic
TTCCCATTATGTTGTCATCT+AGG 0.412025 3_3:-47686470 Msa0455200:three_prime_UTR
GAATCTATTGTTTGTGCTGT+AGG 0.413081 3_3:+47686694 None:intergenic
TTACTTGGTCCCCTTGATAG+AGG 0.436195 3_3:-47686893 Msa0455200:CDS
AATCAAGCTTAGATCTTACT+TGG 0.443706 3_3:-47686908 Msa0455200:CDS
AGCCTAGATGACAACATAAT+GGG 0.446255 3_3:+47686468 None:intergenic
ATTCGCTTCTTGGTTGGTAA+AGG 0.474280 3_3:+47686808 None:intergenic
ATGCAGCTTGATCTTCCTGC+TGG 0.477604 3_3:-47686667 Msa0455200:CDS
GATGAGTTCTGATCTCGAAA+TGG 0.486839 3_3:+47686740 None:intergenic
CTTGCAGGAATCCTCTATCA+AGG 0.519406 3_3:+47686882 None:intergenic
CAGTGAATTCGCTTCTTGGT+TGG 0.546112 3_3:+47686802 None:intergenic
TTGTTTCTGGTAACACGTTG+AGG 0.552159 3_3:-47689629 Msa0455200:CDS
ACTTCGACATCAACGCCAGC+AGG 0.555474 3_3:+47686652 None:intergenic
CATTGGGGATAATGCAGACA+TGG 0.557328 3_3:-47688279 Msa0455200:intron
CACACGTACACAAGGATGCT+CGG 0.558591 3_3:-47686765 Msa0455200:CDS
TTGGAAGAGACAGAAAGAGA+AGG 0.576021 3_3:+47689699 None:intergenic
TTGCAGGAATCCTCTATCAA+GGG 0.586905 3_3:+47686883 None:intergenic
AAAGAAGTACATTCAGAGAG+TGG 0.593670 3_3:+47686522 None:intergenic
TTTGGCTTTGAAGATAACAA+TGG 0.593808 3_3:+47689669 None:intergenic
ATTCTTCCAAATTATGCACA+TGG 0.599701 3_3:-47686360 Msa0455200:three_prime_UTR
CGAGCATCCTTGTGTACGTG+TGG 0.612723 3_3:+47686766 None:intergenic
TCGACTCATTTGCTATCAGT+AGG 0.618374 3_3:+47686567 None:intergenic
ATAGCAAATGAGTCGACACT+AGG 0.628086 3_3:-47686560 Msa0455200:three_prime_UTR
TAAATCTCCACACGTACACA+AGG 0.632451 3_3:-47686773 Msa0455200:CDS
TGCAGGAATCCTCTATCAAG+GGG 0.633408 3_3:+47686884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAGAATTTAAAATTCT+AGG - chr3_3:47687453-47687472 Msa0455200:intron 10.0%
!! AAAAATATATCACATTAATT+CGG + chr3_3:47688326-47688345 None:intergenic 10.0%
!!! GAATATTGATTTTGTTTAAT+TGG - chr3_3:47686673-47686692 Msa0455200:CDS 15.0%
!! TTATATGTAGTTTAATATGT+TGG - chr3_3:47687667-47687686 Msa0455200:intron 15.0%
!! AAAATATATCACATTAATTC+GGG + chr3_3:47688325-47688344 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG + chr3_3:47688499-47688518 None:intergenic 15.0%
!!! TATTTTATTATTTCACTGTT+TGG - chr3_3:47688499-47688518 Msa0455200:intron 15.0%
!! AAAAAAAATGCATTAAAATC+TGG + chr3_3:47688776-47688795 None:intergenic 15.0%
!! ATGAATGAAAATGAAGAAAA+GGG + chr3_3:47686624-47686643 None:intergenic 20.0%
!!! ATTGATTTTGTTTAATTGGT+TGG - chr3_3:47686677-47686696 Msa0455200:CDS 20.0%
!! AATGCAATCTGATTTATATT+TGG - chr3_3:47686920-47686939 Msa0455200:CDS 20.0%
!! AATCTGATTTATATTTGGAT+GGG - chr3_3:47686925-47686944 Msa0455200:CDS 20.0%
!!! GCTTAAAGTTAGTATAATTT+TGG - chr3_3:47687012-47687031 Msa0455200:intron 20.0%
!!! TAAAGTTAGTATAATTTTGG+AGG - chr3_3:47687015-47687034 Msa0455200:intron 20.0%
!!! TTTTCAATCTATTCTTACAT+AGG - chr3_3:47687198-47687217 Msa0455200:intron 20.0%
!! NNNNNNNNTAATGAGTACCT+AGG - chr3_3:47687313-47687332 Msa0455200:intron 20.0%
!! TTGAACATATGAAAAACAAT+AGG - chr3_3:47687380-47687399 Msa0455200:intron 20.0%
!! TGAACATATGAAAAACAATA+GGG - chr3_3:47687381-47687400 Msa0455200:intron 20.0%
!! ACATATTAAATGACTGAAAA+TGG + chr3_3:47687957-47687976 None:intergenic 20.0%
! CATGAATGAAAATGAAGAAA+AGG + chr3_3:47686625-47686644 None:intergenic 25.0%
! ATTCATGTTTGTATTGTGTT+TGG - chr3_3:47686638-47686657 Msa0455200:exon 25.0%
!!! TAAACTGATTTGATCATGTT+TGG + chr3_3:47686839-47686858 None:intergenic 25.0%
!!! TTTACCTCTAGAATCAATTT+TGG - chr3_3:47686855-47686874 Msa0455200:CDS 25.0%
!!! AATTTTGGCTTATGTAAAAG+TGG - chr3_3:47686870-47686889 Msa0455200:CDS 25.0%
!!! ATTTTGGCTTATGTAAAAGT+GGG - chr3_3:47686871-47686890 Msa0455200:CDS 25.0%
! CAATCTGATTTATATTTGGA+TGG - chr3_3:47686924-47686943 Msa0455200:CDS 25.0%
! AACTTTAAGCTAGAATTTGA+AGG + chr3_3:47687002-47687021 None:intergenic 25.0%
! GAACATATGAAAAACAATAG+GGG - chr3_3:47687382-47687401 Msa0455200:intron 25.0%
! TCAAACATTTAGAAAAACGT+AGG + chr3_3:47687743-47687762 None:intergenic 25.0%
! TCTTTGTGATAAAAATGTCT+TGG - chr3_3:47687780-47687799 Msa0455200:intron 25.0%
!!! AAAAATGTCTTGGTGTTTTT+AGG - chr3_3:47687790-47687809 Msa0455200:intron 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG - chr3_3:47687883-47687902 Msa0455200:intron 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG - chr3_3:47687904-47687923 Msa0455200:intron 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG - chr3_3:47687907-47687926 Msa0455200:intron 25.0%
! ATGTAATAGCAATGAAATCA+TGG - chr3_3:47687973-47687992 Msa0455200:intron 25.0%
! TGTAATAGCAATGAAATCAT+GGG - chr3_3:47687974-47687993 Msa0455200:intron 25.0%
! TTACAAATTGAGTGTATGTT+TGG + chr3_3:47688109-47688128 None:intergenic 25.0%
! TGTTTGATAAGTCAAGTAAT+AGG - chr3_3:47688133-47688152 Msa0455200:intron 25.0%
!! TTTTTGGATGAAAAAAGTGA+TGG + chr3_3:47688416-47688435 None:intergenic 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG - chr3_3:47688421-47688440 Msa0455200:intron 25.0%
! AGCTTACATTGTTAATGAAA+AGG - chr3_3:47688448-47688467 Msa0455200:intron 25.0%
! AGAATGAAAACAGCTAAATA+GGG + chr3_3:47688592-47688611 None:intergenic 25.0%
! AAGAATGAAAACAGCTAAAT+AGG + chr3_3:47688593-47688612 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG - chr3_3:47689087-47689106 Msa0455200:intron 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG - chr3_3:47689179-47689198 Msa0455200:intron 25.0%
!! ATAATGGGAAAGCTAAAAAA+GGG + chr3_3:47689649-47689668 None:intergenic 25.0%
! TATGCAAATATCTATGTAAC+AGG + chr3_3:47689702-47689721 None:intergenic 25.0%
! AGACTTACATTACATTGAAT+AGG + chr3_3:47689726-47689745 None:intergenic 25.0%
! ATAAATCCATGTGCATAATT+TGG + chr3_3:47689778-47689797 None:intergenic 25.0%
AGATAACAATGGTGAAGAAT+TGG + chr3_3:47686452-47686471 None:intergenic 30.0%
!! TTTGGCTTTGAAGATAACAA+TGG + chr3_3:47686463-47686482 None:intergenic 30.0%
!! ACAACAGTTGATAACTTAAG+AGG + chr3_3:47686541-47686560 None:intergenic 30.0%
! TAAGCCAAAATTGATTCTAG+AGG + chr3_3:47686862-47686881 None:intergenic 30.0%
!!! TTTTGGCTTATGTAAAAGTG+GGG - chr3_3:47686872-47686891 Msa0455200:CDS 30.0%
GCATAAAAGCAATGAATTTG+AGG - chr3_3:47686951-47686970 Msa0455200:intron 30.0%
! TGAGCTAAAACTGATTTCAA+AGG + chr3_3:47687114-47687133 None:intergenic 30.0%
!!! AGTTTTAGCTCATGTAAAAG+TGG - chr3_3:47687122-47687141 Msa0455200:intron 30.0%
! CTTAGTTCTTAGTGAATGTT+TGG + chr3_3:47687150-47687169 None:intergenic 30.0%
GAGGAAATGTAATGTTATGA+GGG + chr3_3:47687504-47687523 None:intergenic 30.0%
TGAGGAAATGTAATGTTATG+AGG + chr3_3:47687505-47687524 None:intergenic 30.0%
TTCGTGAATATGAATTTCAC+TGG - chr3_3:47687690-47687709 Msa0455200:intron 30.0%
!! AGCAATGTTACGTTTTAGAT+TGG - chr3_3:47687717-47687736 Msa0455200:intron 30.0%
ATGTTTGAACTCAATTCAGT+TGG - chr3_3:47687755-47687774 Msa0455200:intron 30.0%
AATTGAGTGTATGTTTGGAT+TGG + chr3_3:47688104-47688123 None:intergenic 30.0%
! AGCTTTTACCTTCGATTTTT+TGG + chr3_3:47688432-47688451 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG - chr3_3:47688457-47688476 Msa0455200:intron 30.0%
TGTAAATGAAAAAGCCGAAA+GGG + chr3_3:47688569-47688588 None:intergenic 30.0%
AATAAGGTGCATATAGAGTA+AGG + chr3_3:47688633-47688652 None:intergenic 30.0%
TACTCTATATGCACCTTATT+TGG - chr3_3:47688633-47688652 Msa0455200:intron 30.0%
! TATATGCACCTTATTTGGTT+TGG - chr3_3:47688638-47688657 Msa0455200:intron 30.0%
TGATAAAGCCAAACCAAATA+AGG + chr3_3:47688649-47688668 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG + chr3_3:47688677-47688696 None:intergenic 30.0%
AATCCAATGTTTCAGAAGAA+TGG + chr3_3:47688682-47688701 None:intergenic 30.0%
!! TTCTTCTGAAACATTGGATT+TGG - chr3_3:47688682-47688701 Msa0455200:intron 30.0%
GGTAATAAAAAAGAGGGAAA+AGG - chr3_3:47688964-47688983 Msa0455200:intron 30.0%
AGAGTTCACAGATAAGTTAT+AGG + chr3_3:47689133-47689152 None:intergenic 30.0%
! TTGATTCTGATTTTCTGCTT+TGG + chr3_3:47689207-47689226 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG - chr3_3:47689221-47689240 Msa0455200:intron 30.0%
AACTACCAATGCAAAAACAA+TGG - chr3_3:47689290-47689309 Msa0455200:intron 30.0%
ACTACCAATGCAAAAACAAT+GGG - chr3_3:47689291-47689310 Msa0455200:intron 30.0%
! GCTCTAAATATATTTGCTTC+AGG - chr3_3:47689503-47689522 Msa0455200:intron 30.0%
AAGCTAAAAAAGGGATCATT+TGG + chr3_3:47689640-47689659 None:intergenic 30.0%
! CATAATGGGAAAGCTAAAAA+AGG + chr3_3:47689650-47689669 None:intergenic 30.0%
ATTCTTCCAAATTATGCACA+TGG - chr3_3:47689769-47689788 Msa0455200:five_prime_UTR 30.0%
! CTTCAGAGAGTTTGTTTCAA+TGG - chr3_3:47686378-47686397 Msa0455200:three_prime_UTR 35.0%
AAGCACAAAGATTGAAGCTT+TGG + chr3_3:47686481-47686500 None:intergenic 35.0%
!! CAATCTTTGTGCTTTGTTTC+TGG - chr3_3:47686487-47686506 Msa0455200:three_prime_UTR 35.0%
!!! TCCTGAAGTTTTGAATTCTG+AGG - chr3_3:47686570-47686589 Msa0455200:three_prime_UTR 35.0%
ACCTCAGAATTCAAAACTTC+AGG + chr3_3:47686574-47686593 None:intergenic 35.0%
!! CAAGCATTGAGAAAATTCCT+AGG + chr3_3:47687333-47687352 None:intergenic 35.0%
! CTAGGAATTTTCTCAATGCT+TGG - chr3_3:47687331-47687350 Msa0455200:intron 35.0%
! TCCAGAATTTAGAGTGTGTT+TGG - chr3_3:47687412-47687431 Msa0455200:intron 35.0%
TCCAAACACACTCTAAATTC+TGG + chr3_3:47687416-47687435 None:intergenic 35.0%
! ATTTAGAGTGTGTTTGGATG+AGG - chr3_3:47687418-47687437 Msa0455200:intron 35.0%
TGTGTTTGGATGAGGTAATT+TGG - chr3_3:47687426-47687445 Msa0455200:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr3_3:47687486-47687505 None:intergenic 35.0%
GGGAATGTAATGTAATGTTG+AGG + chr3_3:47687523-47687542 None:intergenic 35.0%
TGAATTCCATTGTTTGGATG+GGG + chr3_3:47687544-47687563 None:intergenic 35.0%
GTGAATTCCATTGTTTGGAT+GGG + chr3_3:47687545-47687564 None:intergenic 35.0%
TTGAGGTGAATTCCATTGTT+TGG + chr3_3:47687550-47687569 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr3_3:47687486-47687505 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG + chr3_3:47687585-47687604 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG + chr3_3:47687586-47687605 None:intergenic 35.0%
TCAAAAACCTGTGTTTGGAT+GGG + chr3_3:47687618-47687637 None:intergenic 35.0%
!!! GTGTTTTTAGGTTGATGACT+TGG - chr3_3:47687802-47687821 Msa0455200:intron 35.0%
! ATGCTAATTTTTGACGTGCT+TGG + chr3_3:47687833-47687852 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG - chr3_3:47687833-47687852 Msa0455200:intron 35.0%
GCACGTCAAAAATTAGCATT+GGG - chr3_3:47687834-47687853 Msa0455200:intron 35.0%
CACGTCAAAAATTAGCATTG+GGG - chr3_3:47687835-47687854 Msa0455200:intron 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG - chr3_3:47687921-47687940 Msa0455200:intron 35.0%
! TTAGTGCATCTTTGGATTAG+CGG - chr3_3:47688002-47688021 Msa0455200:intron 35.0%
! ATGATTTGGCAAAATTGCAG+TGG + chr3_3:47688051-47688070 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG - chr3_3:47688050-47688069 Msa0455200:intron 35.0%
! CTATGCCATACTTTTGACAA+GGG + chr3_3:47688200-47688219 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG + chr3_3:47688201-47688220 None:intergenic 35.0%
TATGGCATAGTTTCAGAACA+AGG - chr3_3:47688210-47688229 Msa0455200:intron 35.0%
GTTTCAGAACAAGGTTACAT+TGG - chr3_3:47688219-47688238 Msa0455200:intron 35.0%
AAGGGTAAGTGAAAGACTTT+GGG + chr3_3:47688551-47688570 None:intergenic 35.0%
AAAGGGTAAGTGAAAGACTT+TGG + chr3_3:47688552-47688571 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG - chr3_3:47688552-47688571 Msa0455200:intron 35.0%
GTGTAAATGAAAAAGCCGAA+AGG + chr3_3:47688570-47688589 None:intergenic 35.0%
!! TAGCTGTTTTCATTCTTCTG+AGG - chr3_3:47688596-47688615 Msa0455200:intron 35.0%
!! AGCTGTTTTCATTCTTCTGA+GGG - chr3_3:47688597-47688616 Msa0455200:intron 35.0%
CAATGTTTCAGAAGAATGGA+TGG + chr3_3:47688678-47688697 None:intergenic 35.0%
!! CATCCATTCTTCTGAAACAT+TGG - chr3_3:47688676-47688695 Msa0455200:intron 35.0%
TCCTGAGGGTAATAAAAAAG+AGG - chr3_3:47688957-47688976 Msa0455200:intron 35.0%
CCTGAGGGTAATAAAAAAGA+GGG - chr3_3:47688958-47688977 Msa0455200:intron 35.0%
TAGTCATCATCCAATTTCCA+TGG - chr3_3:47689040-47689059 Msa0455200:intron 35.0%
GAATCTATTGTTTGTGCTGT+AGG + chr3_3:47689438-47689457 None:intergenic 35.0%
! AAAGAAGTACATTCAGAGAG+TGG + chr3_3:47689610-47689629 None:intergenic 35.0%
TTCCCATTATGTTGTCATCT+AGG - chr3_3:47689659-47689678 Msa0455200:CDS 35.0%
AGCCTAGATGACAACATAAT+GGG + chr3_3:47689664-47689683 None:intergenic 35.0%
TTGGAAGAGACAGAAAGAGA+AGG + chr3_3:47686433-47686452 None:intergenic 40.0%
!! TTGTTTCTGGTAACACGTTG+AGG - chr3_3:47686500-47686519 Msa0455200:three_prime_UTR 40.0%
AGGCTAAGAATCAATCGTAG+AGG - chr3_3:47686971-47686990 Msa0455200:intron 40.0%
GAATTCCATTGTTTGGATGG+GGG + chr3_3:47687543-47687562 None:intergenic 40.0%
GGTGAATTCCATTGTTTGGA+TGG + chr3_3:47687546-47687565 None:intergenic 40.0%
AAAAACCTGTGTTTGGATGG+GGG + chr3_3:47687616-47687635 None:intergenic 40.0%
CAAAAACCTGTGTTTGGATG+GGG + chr3_3:47687617-47687636 None:intergenic 40.0%
CTCAAAAACCTGTGTTTGGA+TGG + chr3_3:47687619-47687638 None:intergenic 40.0%
!! CCAAACACAGGTTTTTGAGA+CGG - chr3_3:47687620-47687639 Msa0455200:intron 40.0%
!!! AGGTTTTTGAGACGGTGTAA+AGG - chr3_3:47687628-47687647 Msa0455200:intron 40.0%
!!! GGTTTTTGAGACGGTGTAAA+GGG - chr3_3:47687629-47687648 Msa0455200:intron 40.0%
!!! GTTTTTGAGACGGTGTAAAG+GGG - chr3_3:47687630-47687649 Msa0455200:intron 40.0%
!! GGGACATTTTAGTGCATCTT+TGG - chr3_3:47687994-47688013 Msa0455200:intron 40.0%
TGAGTTAGGCAAAATCACAC+TGG + chr3_3:47688078-47688097 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG + chr3_3:47688101-47688120 None:intergenic 40.0%
ATGTTTCACTGCTGAGTAAC+TGG + chr3_3:47688172-47688191 None:intergenic 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG - chr3_3:47688192-47688211 Msa0455200:intron 40.0%
ACCACTGGATAGAAATCAGA+CGG + chr3_3:47688836-47688855 None:intergenic 40.0%
AATCCAAATCCCTGAAACAC+AGG - chr3_3:47688910-47688929 Msa0455200:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG + chr3_3:47688961-47688980 None:intergenic 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG + chr3_3:47689053-47689072 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG - chr3_3:47689050-47689069 Msa0455200:intron 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG + chr3_3:47689060-47689079 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG + chr3_3:47689249-47689268 None:intergenic 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG + chr3_3:47689298-47689317 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG + chr3_3:47689318-47689337 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG + chr3_3:47689324-47689343 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG + chr3_3:47689356-47689375 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG - chr3_3:47689356-47689375 Msa0455200:intron 40.0%
! GATGAGTTCTGATCTCGAAA+TGG + chr3_3:47689392-47689411 None:intergenic 40.0%
!! TCGACTCATTTGCTATCAGT+AGG + chr3_3:47689565-47689584 None:intergenic 40.0%
ATAGCAAATGAGTCGACACT+AGG - chr3_3:47689569-47689588 Msa0455200:CDS 40.0%
GAGCCTAGATGACAACATAA+TGG + chr3_3:47689665-47689684 None:intergenic 40.0%
ACATTCCCCCATCCAAACAA+TGG - chr3_3:47687535-47687554 Msa0455200:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + chr3_3:47687603-47687622 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr3_3:47687604-47687623 None:intergenic 45.0%
CCGTCTCAAAAACCTGTGTT+TGG + chr3_3:47687623-47687642 None:intergenic 45.0%
CATTGGGGATAATGCAGACA+TGG - chr3_3:47687850-47687869 Msa0455200:intron 45.0%
ATCACACTGGCACCATGATT+TGG + chr3_3:47688065-47688084 None:intergenic 45.0%
! AGTGTTGGATCGAGACTAGA+CGG - chr3_3:47688749-47688768 Msa0455200:intron 45.0%
ACCGTCTGATTTCTATCCAG+TGG - chr3_3:47688832-47688851 Msa0455200:intron 45.0%
CCACATAGTGTGATTGCACA+AGG + chr3_3:47688936-47688955 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG - chr3_3:47688933-47688952 Msa0455200:intron 45.0%
ATCACACTATGTGGTTCCTG+AGG - chr3_3:47688942-47688961 Msa0455200:intron 45.0%
TCACACTATGTGGTTCCTGA+GGG - chr3_3:47688943-47688962 Msa0455200:intron 45.0%
TTACTTGGTCCCCTTGATAG+AGG - chr3_3:47689236-47689255 Msa0455200:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG + chr3_3:47689248-47689267 None:intergenic 45.0%
CTTGCAGGAATCCTCTATCA+AGG + chr3_3:47689250-47689269 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG + chr3_3:47689330-47689349 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG + chr3_3:47689334-47689353 None:intergenic 45.0%
ACATTCCCCCATCCAAACAC+AGG - chr3_3:47687608-47687627 Msa0455200:intron 50.0%
!! GTTTGGATTGGCGGTGAGTT+AGG + chr3_3:47688092-47688111 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG - chr3_3:47688716-47688735 Msa0455200:intron 50.0%
TCCACACATTCACGCAGTCT+GGG - chr3_3:47688717-47688736 Msa0455200:intron 50.0%
! ATTCACGCAGTCTGGGATGT+CGG - chr3_3:47688724-47688743 Msa0455200:intron 50.0%
TCATGGACGTAGGTAACCAC+TGG + chr3_3:47688851-47688870 None:intergenic 50.0%
AGTCATGGTCTCATGGACGT+AGG + chr3_3:47688861-47688880 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG + chr3_3:47688868-47688887 None:intergenic 50.0%
TTTGGATTTGACGCTGTCCG+CGG + chr3_3:47688898-47688917 None:intergenic 50.0%
AGGCCTGTGTTTCAGGGATT+TGG + chr3_3:47688916-47688935 None:intergenic 50.0%
TGCACAAGGCCTGTGTTTCA+GGG + chr3_3:47688922-47688941 None:intergenic 50.0%
TTGCACAAGGCCTGTGTTTC+AGG + chr3_3:47688923-47688942 None:intergenic 50.0%
GGATTCCTGCAAGCAGATAC+TGG - chr3_3:47689257-47689276 Msa0455200:intron 50.0%
TGCATCCAGTATCTGCTTGC+AGG + chr3_3:47689265-47689284 None:intergenic 50.0%
CACACGTACACAAGGATGCT+CGG - chr3_3:47689364-47689383 Msa0455200:intron 50.0%
ATGCAGCTTGATCTTCCTGC+TGG - chr3_3:47689462-47689481 Msa0455200:intron 50.0%
TCCCAGACTGCGTGAATGTG+TGG + chr3_3:47688721-47688740 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG - chr3_3:47688734-47688753 Msa0455200:intron 55.0%
GGTGCACATTCACGCAGTCA+TGG + chr3_3:47688876-47688895 None:intergenic 55.0%
TTGGATTTGACGCTGTCCGC+GGG + chr3_3:47688897-47688916 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG + chr3_3:47689366-47689385 None:intergenic 55.0%
ACTTCGACATCAACGCCAGC+AGG + chr3_3:47689480-47689499 None:intergenic 55.0%
ACTGCGTGAATGTGCACCCG+CGG - chr3_3:47688878-47688897 Msa0455200:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 47686326 47689825 47686326 ID=Msa0455200;Name=Msa0455200
chr3_3 mRNA 47686326 47689825 47686326 ID=Msa0455200-mRNA-1;Parent=Msa0455200;Name=Msa0455200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|3|316|188
chr3_3 exon 47686326 47686953 47686326 ID=Msa0455200-mRNA-1:exon:8874;Parent=Msa0455200-mRNA-1
chr3_3 exon 47688280 47688339 47688280 ID=Msa0455200-mRNA-1:exon:8873;Parent=Msa0455200-mRNA-1
chr3_3 exon 47689560 47689825 47689560 ID=Msa0455200-mRNA-1:exon:8872;Parent=Msa0455200-mRNA-1
chr3_3 five_prime_UTR 47689755 47689825 47689755 ID=Msa0455200-mRNA-1:five_prime_utr;Parent=Msa0455200-mRNA-1
chr3_3 CDS 47689560 47689754 47689560 ID=Msa0455200-mRNA-1:cds;Parent=Msa0455200-mRNA-1
chr3_3 CDS 47688280 47688339 47688280 ID=Msa0455200-mRNA-1:cds;Parent=Msa0455200-mRNA-1
chr3_3 CDS 47686642 47686953 47686642 ID=Msa0455200-mRNA-1:cds;Parent=Msa0455200-mRNA-1
chr3_3 three_prime_UTR 47686326 47686641 47686326 ID=Msa0455200-mRNA-1:three_prime_utr;Parent=Msa0455200-mRNA-1
Gene Sequence

>Msa0455200

ATGGCAGTTTCATCTCTCTCAGCAACATTCATTCCTTCTCTTTCTGTCTCTTCCAATTCTTCACCATTGTTATCTTCAAAGCCAAAGCTTCAATCTTTGTGCTTTGTTTCTGGTAACACGTTGAGGATTACAAATGCGAAACCTCTTAAGTTATCAACTGTTGTTCATGCTGCTCCTGAAGTTTTGAATTCTGAGGTTGATGACTTGGAGACTCCAAGCACGTCAAAAATTAGCATTGGGGATAATGCAGACATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATACTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTGTTTCCTACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA

Protein sequence

>Msa0455200

MAVSSLSATFIPSLSVSSNSSPLLSSKPKLQSLCFVSGNTLRITNAKPLKLSTVVHAAPEVLNSEVDDLETPSTSKISIGDNADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL*