AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181010 MtrunA17_Chr1g0203761 89.735 302 2 1 1 273 1 302 0.0 536
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181010 AT5G52100.1 67.434 304 62 5 1 273 1 298 2.45e-137 389

Find 103 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAGACCATCGTATAATT+TGG 0.179028 1_4:-69093490 None:intergenic
GTGGAACAGGTTGTAATAAA+TGG 0.207909 1_4:+69090839 Msa0181010:intron
AAATGACCTTACCATGGTTT+TGG 0.224480 1_4:+69091244 Msa0181010:CDS
AAAGGCAAGGGGTCAAGTTT+TGG 0.246017 1_4:+69092605 Msa0181010:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 1_4:-69092436 None:intergenic
TATATAGGCTTATCTTCTTT+TGG 0.267528 1_4:+69090587 Msa0181010:five_prime_UTR
GTTTAAACCGTTGTTACTTC+TGG 0.308865 1_4:+69093618 Msa0181010:three_prime_UTR
AGCAATCAATTTAGCTAGTT+AGG 0.316369 1_4:+69093395 Msa0181010:three_prime_UTR
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 1_4:-69090658 None:intergenic
GTGGTCTTTAAACCTGTTGT+AGG 0.322301 1_4:+69093532 Msa0181010:three_prime_UTR
CAATTTCGACATTGCGGTAA+TGG 0.331384 1_4:-69092146 None:intergenic
AATGGAGCAGCAAAGGAAAT+AGG 0.336907 1_4:+69090857 Msa0181010:CDS
TCTTAAACTTGATACACTAA+TGG 0.344826 1_4:+69093720 Msa0181010:three_prime_UTR
TTCTTGAAGAACTTAGTATA+CGG 0.352631 1_4:+69093138 Msa0181010:intron
CAACATGTTGGGGAAGATAT+TGG 0.357960 1_4:+69090944 Msa0181010:CDS
CAAATATCATAGACAAGGTT+TGG 0.361438 1_4:+69093237 Msa0181010:three_prime_UTR
GACTACAACCGCTGTGGCCT+TGG 0.364137 1_4:-69091386 None:intergenic
ACTGTATAGGCAACAGCATT+TGG 0.373770 1_4:+69091779 Msa0181010:intron
ACCTATACAAAGCAATATAA+AGG 0.391589 1_4:+69090728 Msa0181010:CDS
CTGAGACCATCGTATAATTT+GGG 0.401558 1_4:-69093489 None:intergenic
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 1_4:-69092426 None:intergenic
ATGTGTGTCACATAATATAT+AGG 0.404813 1_4:+69090572 Msa0181010:five_prime_UTR
TGGAATTCGCGTGCACAGTT+TGG 0.408268 1_4:+69092632 Msa0181010:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 1_4:+69090933 Msa0181010:CDS
CTGCAACAATATTGATCCTA+TGG 0.409023 1_4:-69092100 None:intergenic
AGTAGTTGATGGAATGAAAC+TGG 0.409025 1_4:-69090647 None:intergenic
GCCAGAGGAATGGAAGTTGC+AGG 0.411286 1_4:+69090908 Msa0181010:CDS
AATGACTTTATTGTATGTTC+TGG 0.411404 1_4:-69093350 None:intergenic
TGGTCTTTAAACCTGTTGTA+GGG 0.416767 1_4:+69093533 Msa0181010:three_prime_UTR
CCACCCCACAAGTTTCTCAT+TGG 0.425747 1_4:+69093646 Msa0181010:three_prime_UTR
TCCTGCAACTTCCATTCCTC+TGG 0.431555 1_4:-69090909 None:intergenic
ATCATATGCTAATGCTACTT+TGG 0.432488 1_4:+69093179 Msa0181010:exon
TCACCCCTTGCTCACCATGC+TGG 0.433731 1_4:-69091876 None:intergenic
GGTATATGACAATGTAAAAC+AGG 0.437708 1_4:+69091429 Msa0181010:CDS
GTTAAATTCAAGCGACTCAC+TGG 0.440125 1_4:+69093201 Msa0181010:three_prime_UTR
GCCTTTATATTGCTTTGTAT+AGG 0.451850 1_4:-69090729 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 1_4:-69092175 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 1_4:+69090662 Msa0181010:CDS
TCTAATTCAACCCCTACAAC+AGG 0.462953 1_4:-69093544 None:intergenic
TTGTATAGGTTGTGCTGAGC+AGG 0.468509 1_4:-69090715 None:intergenic
ATCAAAATATTACCCAGCTT+CGG 0.470196 1_4:+69090545 None:intergenic
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 1_4:-69092419 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 1_4:-69092444 None:intergenic
GGAATGAAACTGGCAACTTA+AGG 0.494198 1_4:-69090637 None:intergenic
CACAGAGGCTTGAGCAGCAA+TGG 0.497689 1_4:+69090611 Msa0181010:exon
ACCGTATCTAATTTGATTCG+CGG 0.502405 1_4:-69091824 None:intergenic
GCTATTGATACTCAACATGT+TGG 0.502529 1_4:+69090932 Msa0181010:CDS
AGACTCCTCAACAGATGTCT+TGG 0.508028 1_4:+69092484 Msa0181010:CDS
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 1_4:+69092084 Msa0181010:CDS
GACACACATATAGCCGAAGC+TGG 0.512952 1_4:-69090558 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 1_4:+69092062 Msa0181010:intron
TTTCCTATAGCTTTGTGGCA+TGG 0.525843 1_4:+69091196 Msa0181010:intron
AGGATCAATATTGTTGCAGC+AGG 0.526093 1_4:+69092104 Msa0181010:CDS
TGTAATAAATGGAGCAGCAA+AGG 0.530888 1_4:+69090850 Msa0181010:CDS
CAATGAGAAACTTGTGGGGT+GGG 0.538274 1_4:-69093645 None:intergenic
TATGATATTTGTCAACAAGC+TGG 0.541742 1_4:-69093225 None:intergenic
GCCAACAATCTCTCTAACCT+CGG 0.544225 1_4:+69092443 Msa0181010:CDS
ACATTGTCATATACCGCGGA+AGG 0.549371 1_4:-69091421 None:intergenic
ATATATGCAGTTGTTATACA+AGG 0.549600 1_4:-69093815 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 1_4:+69090886 Msa0181010:CDS
TTAGTAATGTGTAAGTCTCT+TGG 0.555667 1_4:+69093590 Msa0181010:three_prime_UTR
TGTTGGGGAAGATATTGGAC+AGG 0.558324 1_4:+69090949 Msa0181010:CDS
AGTAGCATGTAAGTCTTTCG+CGG 0.561771 1_4:+69093510 Msa0181010:three_prime_UTR
ATGGTAAGGTCATTTAGTAT+AGG 0.563180 1_4:-69091236 None:intergenic
TTACCGCAATGTCGAAATTG+TGG 0.563978 1_4:+69092149 Msa0181010:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 1_4:+69092403 Msa0181010:intron
GTAATGTGTAAGTCTCTTGG+TGG 0.570721 1_4:+69093593 Msa0181010:three_prime_UTR
TGTCGAAATTGTGGAATCCA+AGG 0.571619 1_4:+69092158 Msa0181010:CDS
ATTGATCCTATGGAAAGCGT+TGG 0.571844 1_4:-69092090 None:intergenic
TAGAGCCCAAAACCATGGTA+AGG 0.573337 1_4:-69091250 None:intergenic
TAGTCCAATGAGAAACTTGT+GGG 0.575516 1_4:-69093650 None:intergenic
AAGTGAACTGTTGTACTAGA+GGG 0.580769 1_4:-69092669 None:intergenic
GAAGAACTTAGTATACGGCT+TGG 0.581279 1_4:+69093143 Msa0181010:intron
AAAGTGAACTGTTGTACTAG+AGG 0.590884 1_4:-69092670 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 1_4:+69090898 Msa0181010:CDS
GGTCTTTAAACCTGTTGTAG+GGG 0.593526 1_4:+69093534 Msa0181010:three_prime_UTR
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 1_4:-69092660 None:intergenic
CCAATGAGAAACTTGTGGGG+TGG 0.596788 1_4:-69093646 None:intergenic
GCCGCGAATCAAATTAGATA+CGG 0.602862 1_4:+69091823 Msa0181010:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 1_4:+69090934 Msa0181010:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 1_4:-69091224 None:intergenic
CGATTTCACTGACCCTTCCG+CGG 0.603993 1_4:+69091408 Msa0181010:CDS
ATTATCAGCATTCTGTGAGA+AGG 0.611346 1_4:+69091853 Msa0181010:CDS
GACCATCGTATAATTTGGGT+AGG 0.614263 1_4:-69093485 None:intergenic
ACCATCGTATAATTTGGGTA+GGG 0.620846 1_4:-69093484 None:intergenic
TATACTAAATGACCTTACCA+TGG 0.623911 1_4:+69091238 Msa0181010:CDS
CATTGTCATATACCGCGGAA+GGG 0.627711 1_4:-69091420 None:intergenic
ACACACATATAGCCGAAGCT+GGG 0.628344 1_4:-69090557 None:intergenic
ATTCTGTGAGAAGGCCAGCA+TGG 0.629094 1_4:+69091862 Msa0181010:CDS
CCTTACCAAGACATCTGTTG+AGG 0.630824 1_4:-69092489 None:intergenic
ATTCCACAATTTCGACATTG+CGG 0.643338 1_4:-69092152 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 1_4:-69092460 None:intergenic
AGATATAGAGCCCAAAACCA+TGG 0.651854 1_4:-69091255 None:intergenic
GTTGACAAATATCATAGACA+AGG 0.661172 1_4:+69093232 Msa0181010:three_prime_UTR
ATAGTCCAATGAGAAACTTG+TGG 0.675318 1_4:-69093651 None:intergenic
ACCCTACCCAAATTATACGA+TGG 0.676435 1_4:+69093483 Msa0181010:three_prime_UTR
TATCACACGACAAAGGCAAG+GGG 0.699381 1_4:+69092594 Msa0181010:intron
AGCATGTAAGTCTTTCGCGG+TGG 0.707019 1_4:+69093513 Msa0181010:three_prime_UTR
GGGATCACCAGAAGTAACAA+CGG 0.716525 1_4:-69093625 None:intergenic
TTTGCAGTCCAAGGCCACAG+CGG 0.733235 1_4:+69091378 Msa0181010:intron
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 1_4:+69090893 Msa0181010:CDS
GAAATCGACTACAACCGCTG+TGG 0.746133 1_4:-69091392 None:intergenic
AGTCCAATGAGAAACTTGTG+GGG 0.805148 1_4:-69093649 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG + chr1_4:69092895-69092914 Msa0181010:intron 10.0%
!! TTATATAAGCACTTAATTAA+CGG + chr1_4:69091158-69091177 Msa0181010:intron 15.0%
!! CTATAGGAAAATAAAAAATT+AGG - chr1_4:69091186-69091205 None:intergenic 15.0%
!!! ACATATTTTAAAATTTGAGT+TGG - chr1_4:69093571-69093590 None:intergenic 15.0%
!!! AATTTCTGTTATGTAATTTT+AGG - chr1_4:69093785-69093804 None:intergenic 15.0%
!!! CAAAGTGTTAATTTTGAAAA+TGG - chr1_4:69090768-69090787 None:intergenic 20.0%
!!! TGTTATAAGTTGTTTTCATA+AGG - chr1_4:69091059-69091078 None:intergenic 20.0%
!! TATATAAGCACTTAATTAAC+GGG + chr1_4:69091159-69091178 Msa0181010:intron 20.0%
!! TTGTAGATACAAAAAGATTA+AGG - chr1_4:69091340-69091359 None:intergenic 20.0%
!!! TTCATCTTAAATGCATATTT+TGG - chr1_4:69091493-69091512 None:intergenic 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG + chr1_4:69091505-69091524 Msa0181010:intron 20.0%
!! AAGACTGATAGTTTATTTAT+TGG + chr1_4:69091537-69091556 Msa0181010:intron 20.0%
!! AGACTGATAGTTTATTTATT+GGG + chr1_4:69091538-69091557 Msa0181010:intron 20.0%
!!! TAAATAGATTTTACCATAAG+TGG - chr1_4:69092239-69092258 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG + chr1_4:69092240-69092259 Msa0181010:intron 20.0%
!!! TTATATTTTCGTGAGTAAAT+TGG - chr1_4:69092752-69092771 None:intergenic 20.0%
!! TAATGTGTAAGAGAAAAATT+CGG - chr1_4:69093288-69093307 None:intergenic 20.0%
!!! TCATATTACTTTTTTGCAAA+AGG + chr1_4:69093682-69093701 Msa0181010:three_prime_UTR 20.0%
! ATGTGTGTCACATAATATAT+AGG + chr1_4:69090572-69090591 Msa0181010:five_prime_UTR 25.0%
!! TATATAGGCTTATCTTCTTT+TGG + chr1_4:69090587-69090606 Msa0181010:five_prime_UTR 25.0%
! ACCTATACAAAGCAATATAA+AGG + chr1_4:69090728-69090747 Msa0181010:CDS 25.0%
!!! TTTTTGTTTAAGACAGCTTA+TGG + chr1_4:69090972-69090991 Msa0181010:intron 25.0%
! ATATAAGCACTTAATTAACG+GGG + chr1_4:69091160-69091179 Msa0181010:intron 25.0%
!!! TTTATTTTCCTATAGCTTTG+TGG + chr1_4:69091191-69091210 Msa0181010:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG - chr1_4:69091227-69091246 None:intergenic 25.0%
! CGAACATACTTATATATTGT+TGG + chr1_4:69091467-69091486 Msa0181010:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG + chr1_4:69091512-69091531 Msa0181010:intron 25.0%
!! TTTTCATACTTCATAGCTAA+AGG + chr1_4:69091636-69091655 Msa0181010:intron 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG + chr1_4:69091664-69091683 Msa0181010:intron 25.0%
! AAACTCATAATTGTAGCATT+AGG + chr1_4:69091715-69091734 Msa0181010:intron 25.0%
!!! TTGATTCTTTTTCACTGTAT+AGG + chr1_4:69091766-69091785 Msa0181010:intron 25.0%
! TAAAGTAGGAAATAACTGAA+AGG - chr1_4:69091976-69091995 None:intergenic 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG - chr1_4:69091990-69092009 None:intergenic 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG + chr1_4:69092029-69092048 Msa0181010:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG - chr1_4:69092037-69092056 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG + chr1_4:69092036-69092055 Msa0181010:intron 25.0%
! ATTTGGTTAACTATAATGAC+AGG + chr1_4:69092053-69092072 Msa0181010:intron 25.0%
! TTTGGTTAACTATAATGACA+GGG + chr1_4:69092054-69092073 Msa0181010:intron 25.0%
! TTATGTTCAATATCCACTTA+TGG + chr1_4:69092223-69092242 Msa0181010:intron 25.0%
! AATTATTTATCACACGACAA+AGG + chr1_4:69092587-69092606 Msa0181010:intron 25.0%
! GCTTAGACTTCAAATAATTA+AGG - chr1_4:69093055-69093074 None:intergenic 25.0%
! AGTTCTTCAAGAATGATAAA+GGG - chr1_4:69093131-69093150 None:intergenic 25.0%
! AAGTTCTTCAAGAATGATAA+AGG - chr1_4:69093132-69093151 None:intergenic 25.0%
! TTCTTGAAGAACTTAGTATA+CGG + chr1_4:69093138-69093157 Msa0181010:intron 25.0%
! AATGACTTTATTGTATGTTC+TGG - chr1_4:69093353-69093372 None:intergenic 25.0%
!! TCATTCATCTTTTACACAAA+GGG + chr1_4:69093368-69093387 Msa0181010:three_prime_UTR 25.0%
!!! ATGCATGATTTTGTTGTTTT+TGG - chr1_4:69093456-69093475 None:intergenic 25.0%
! TCTTAAACTTGATACACTAA+TGG + chr1_4:69093720-69093739 Msa0181010:three_prime_UTR 25.0%
!!! TGTAATTTTAGGATGGATTA+AGG - chr1_4:69093774-69093793 None:intergenic 25.0%
!!! TCTGTTATGTAATTTTAGGA+TGG - chr1_4:69093781-69093800 None:intergenic 25.0%
TTGAGAATTCAAGTAGTTGA+TGG - chr1_4:69090661-69090680 None:intergenic 30.0%
CAACTACTTGAATTCTCAAA+TGG + chr1_4:69090662-69090681 Msa0181010:CDS 30.0%
GCCTTTATATTGCTTTGTAT+AGG - chr1_4:69090732-69090751 None:intergenic 30.0%
CTATTGATACTCAACATGTT+GGG + chr1_4:69090933-69090952 Msa0181010:CDS 30.0%
TATTGATACTCAACATGTTG+GGG + chr1_4:69090934-69090953 Msa0181010:CDS 30.0%
! TTTAAGACAGCTTATGGAAA+TGG + chr1_4:69090978-69090997 Msa0181010:intron 30.0%
AATGAGCTGAAAACAACTTA+TGG - chr1_4:69091016-69091035 None:intergenic 30.0%
ATGGTAAGGTCATTTAGTAT+AGG - chr1_4:69091239-69091258 None:intergenic 30.0%
TATACTAAATGACCTTACCA+TGG + chr1_4:69091238-69091257 Msa0181010:CDS 30.0%
TGAATTAGCAATAACAAACG+TGG + chr1_4:69091295-69091314 Msa0181010:intron 30.0%
! TTTTACATTGTCATATACCG+CGG - chr1_4:69091428-69091447 None:intergenic 30.0%
GGTATATGACAATGTAAAAC+AGG + chr1_4:69091429-69091448 Msa0181010:CDS 30.0%
! AGGAAACAATTTCAAGTGAT+AGG + chr1_4:69091656-69091675 Msa0181010:intron 30.0%
CATAATCTACTCTTCAATCT+TGG - chr1_4:69091690-69091709 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG + chr1_4:69091690-69091709 Msa0181010:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG - chr1_4:69091968-69091987 None:intergenic 30.0%
TTAGTAGTAGCAGATTTAGT+CGG - chr1_4:69092013-69092032 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG - chr1_4:69092220-69092239 None:intergenic 30.0%
AAGAGCTTCTTCAGTATATT+TGG - chr1_4:69092384-69092403 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG - chr1_4:69092717-69092736 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG - chr1_4:69092923-69092942 None:intergenic 30.0%
TGTACTATCTTCTCATTATG+AGG + chr1_4:69092926-69092945 Msa0181010:intron 30.0%
! CAAATAATTAAGGTACCTTG+AGG - chr1_4:69093045-69093064 None:intergenic 30.0%
! CTTCTTTTAATCATTCTGCT+TGG + chr1_4:69093083-69093102 Msa0181010:intron 30.0%
GTTCTTCAAGAATGATAAAG+GGG - chr1_4:69093130-69093149 None:intergenic 30.0%
! ATCATATGCTAATGCTACTT+TGG + chr1_4:69093179-69093198 Msa0181010:exon 30.0%
TATGATATTTGTCAACAAGC+TGG - chr1_4:69093228-69093247 None:intergenic 30.0%
GTTGACAAATATCATAGACA+AGG + chr1_4:69093232-69093251 Msa0181010:three_prime_UTR 30.0%
CAAATATCATAGACAAGGTT+TGG + chr1_4:69093237-69093256 Msa0181010:three_prime_UTR 30.0%
! GTCATTCATCTTTTACACAA+AGG + chr1_4:69093367-69093386 Msa0181010:three_prime_UTR 30.0%
AGCAATCAATTTAGCTAGTT+AGG + chr1_4:69093395-69093414 Msa0181010:three_prime_UTR 30.0%
TTAGTAATGTGTAAGTCTCT+TGG + chr1_4:69093590-69093609 Msa0181010:three_prime_UTR 30.0%
! TTATCTTCTTTTGGTCACAG+AGG + chr1_4:69090596-69090615 Msa0181010:five_prime_UTR 35.0%
!! AGTAGTTGATGGAATGAAAC+TGG - chr1_4:69090650-69090669 None:intergenic 35.0%
! TCAATTTTCAACACCCTTTG+TGG + chr1_4:69090820-69090839 Msa0181010:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG - chr1_4:69090836-69090855 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG - chr1_4:69090837-69090856 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG + chr1_4:69090839-69090858 Msa0181010:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG + chr1_4:69090850-69090869 Msa0181010:CDS 35.0%
GCTATTGATACTCAACATGT+TGG + chr1_4:69090932-69090951 Msa0181010:CDS 35.0%
!! AGTTGTTTTCATAAGGCTAG+AGG - chr1_4:69091102-69091121 None:intergenic 35.0%
! AAATGACCTTACCATGGTTT+TGG + chr1_4:69091244-69091263 Msa0181010:CDS 35.0%
! AATGACCTTACCATGGTTTT+GGG + chr1_4:69091245-69091264 Msa0181010:CDS 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG + chr1_4:69091441-69091460 Msa0181010:intron 35.0%
! ACCGTATCTAATTTGATTCG+CGG - chr1_4:69091827-69091846 None:intergenic 35.0%
ATTATCAGCATTCTGTGAGA+AGG + chr1_4:69091853-69091872 Msa0181010:CDS 35.0%
CTGCAACAATATTGATCCTA+TGG - chr1_4:69092103-69092122 None:intergenic 35.0%
ATTCCACAATTTCGACATTG+CGG - chr1_4:69092155-69092174 None:intergenic 35.0%
! TCTTACATTTGCATTAGCCT+TGG - chr1_4:69092178-69092197 None:intergenic 35.0%
GTTAAGCTAACTTAACTGAC+TGG + chr1_4:69092285-69092304 Msa0181010:intron 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG + chr1_4:69092391-69092410 Msa0181010:intron 35.0%
TGTTATACAGGATCTTCCAT+CGG + chr1_4:69092403-69092422 Msa0181010:intron 35.0%
TAGAGAGATTGTTGGCAATT+TGG - chr1_4:69092439-69092458 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG - chr1_4:69092672-69092691 None:intergenic 35.0%
AAAGTGAACTGTTGTACTAG+AGG - chr1_4:69092673-69092692 None:intergenic 35.0%
!! AGTACAACAGTTCACTTTTC+TGG + chr1_4:69092675-69092694 Msa0181010:CDS 35.0%
ATCTGTGATATCATGCTTGA+TGG - chr1_4:69092972-69092991 None:intergenic 35.0%
TGTGTAAGAGAAAAATTCGG+AGG - chr1_4:69093285-69093304 None:intergenic 35.0%
! CGTGATTCGATGATTTTGTA+AGG + chr1_4:69093318-69093337 Msa0181010:three_prime_UTR 35.0%
ACCATCGTATAATTTGGGTA+GGG - chr1_4:69093487-69093506 None:intergenic 35.0%
CTGAGACCATCGTATAATTT+GGG - chr1_4:69093492-69093511 None:intergenic 35.0%
ACTGAGACCATCGTATAATT+TGG - chr1_4:69093493-69093512 None:intergenic 35.0%
TGGTCTTTAAACCTGTTGTA+GGG + chr1_4:69093533-69093552 Msa0181010:three_prime_UTR 35.0%
! GTTTAAACCGTTGTTACTTC+TGG + chr1_4:69093618-69093637 Msa0181010:three_prime_UTR 35.0%
TAGTCCAATGAGAAACTTGT+GGG - chr1_4:69093653-69093672 None:intergenic 35.0%
ATAGTCCAATGAGAAACTTG+TGG - chr1_4:69093654-69093673 None:intergenic 35.0%
GGAATGAAACTGGCAACTTA+AGG - chr1_4:69090640-69090659 None:intergenic 40.0%
AATGGAGCAGCAAAGGAAAT+AGG + chr1_4:69090857-69090876 Msa0181010:CDS 40.0%
AGCAGTATTAGCTGTGACAA+AGG + chr1_4:69090886-69090905 Msa0181010:CDS 40.0%
CAACATGTTGGGGAAGATAT+TGG + chr1_4:69090944-69090963 Msa0181010:CDS 40.0%
TTTCGATAAGCTTTCCACGA+TGG + chr1_4:69091034-69091053 Msa0181010:intron 40.0%
!! GTTGTTTTCATAAGCCATCG+TGG - chr1_4:69091051-69091070 None:intergenic 40.0%
!! TTTCCTATAGCTTTGTGGCA+TGG + chr1_4:69091196-69091215 Msa0181010:intron 40.0%
AGATATAGAGCCCAAAACCA+TGG - chr1_4:69091258-69091277 None:intergenic 40.0%
GAATTGCAATTTGCAGTCCA+AGG + chr1_4:69091369-69091388 Msa0181010:intron 40.0%
ACTGTATAGGCAACAGCATT+TGG + chr1_4:69091779-69091798 Msa0181010:intron 40.0%
GCCGCGAATCAAATTAGATA+CGG + chr1_4:69091823-69091842 Msa0181010:CDS 40.0%
! ACTATAATGACAGGGTGTCT+TGG + chr1_4:69092062-69092081 Msa0181010:intron 40.0%
! ATTGATCCTATGGAAAGCGT+TGG - chr1_4:69092093-69092112 None:intergenic 40.0%
AGGATCAATATTGTTGCAGC+AGG + chr1_4:69092104-69092123 Msa0181010:CDS 40.0%
CAATTTCGACATTGCGGTAA+TGG - chr1_4:69092149-69092168 None:intergenic 40.0%
TTACCGCAATGTCGAAATTG+TGG + chr1_4:69092149-69092168 Msa0181010:CDS 40.0%
TGTCGAAATTGTGGAATCCA+AGG + chr1_4:69092158-69092177 Msa0181010:CDS 40.0%
TCTTCATTCCCAAACGAAGA+CGG + chr1_4:69092335-69092354 Msa0181010:intron 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG - chr1_4:69092429-69092448 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG - chr1_4:69092463-69092482 None:intergenic 40.0%
TTTATCACACGACAAAGGCA+AGG + chr1_4:69092592-69092611 Msa0181010:intron 40.0%
TTATCACACGACAAAGGCAA+GGG + chr1_4:69092593-69092612 Msa0181010:intron 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG + chr1_4:69092643-69092662 Msa0181010:CDS 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG + chr1_4:69092681-69092700 Msa0181010:CDS 40.0%
GATGTACAATGTCTTATGCC+AGG + chr1_4:69092989-69093008 Msa0181010:intron 40.0%
GAAGAACTTAGTATACGGCT+TGG + chr1_4:69093143-69093162 Msa0181010:intron 40.0%
GTTAAATTCAAGCGACTCAC+TGG + chr1_4:69093201-69093220 Msa0181010:three_prime_UTR 40.0%
ACCCTACCCAAATTATACGA+TGG + chr1_4:69093483-69093502 Msa0181010:three_prime_UTR 40.0%
GACCATCGTATAATTTGGGT+AGG - chr1_4:69093488-69093507 None:intergenic 40.0%
AGTAGCATGTAAGTCTTTCG+CGG + chr1_4:69093510-69093529 Msa0181010:three_prime_UTR 40.0%
GTGGTCTTTAAACCTGTTGT+AGG + chr1_4:69093532-69093551 Msa0181010:three_prime_UTR 40.0%
GGTCTTTAAACCTGTTGTAG+GGG + chr1_4:69093534-69093553 Msa0181010:three_prime_UTR 40.0%
TCTAATTCAACCCCTACAAC+AGG - chr1_4:69093547-69093566 None:intergenic 40.0%
GTAATGTGTAAGTCTCTTGG+TGG + chr1_4:69093593-69093612 Msa0181010:three_prime_UTR 40.0%
AGTCCAATGAGAAACTTGTG+GGG - chr1_4:69093652-69093671 None:intergenic 40.0%
ACACACATATAGCCGAAGCT+GGG - chr1_4:69090560-69090579 None:intergenic 45.0%
TTGTATAGGTTGTGCTGAGC+AGG - chr1_4:69090718-69090737 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG + chr1_4:69090826-69090845 Msa0181010:intron 45.0%
TGTTGGGGAAGATATTGGAC+AGG + chr1_4:69090949-69090968 Msa0181010:CDS 45.0%
CTTCCATGCCACAAAGCTAT+AGG - chr1_4:69091202-69091221 None:intergenic 45.0%
TAGAGCCCAAAACCATGGTA+AGG - chr1_4:69091253-69091272 None:intergenic 45.0%
!!! GGTTTTGGGCTCTATATCTC+AGG + chr1_4:69091259-69091278 Msa0181010:CDS 45.0%
CATTGTCATATACCGCGGAA+GGG - chr1_4:69091423-69091442 None:intergenic 45.0%
ACATTGTCATATACCGCGGA+AGG - chr1_4:69091424-69091443 None:intergenic 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG - chr1_4:69092346-69092365 None:intergenic 45.0%
GCCAACAATCTCTCTAACCT+CGG + chr1_4:69092443-69092462 Msa0181010:CDS 45.0%
ACCGAGGTTAGAGAGATTGT+TGG - chr1_4:69092447-69092466 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG + chr1_4:69092484-69092503 Msa0181010:CDS 45.0%
CCTTACCAAGACATCTGTTG+AGG - chr1_4:69092492-69092511 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG + chr1_4:69092489-69092508 Msa0181010:intron 45.0%
TATCACACGACAAAGGCAAG+GGG + chr1_4:69092594-69092613 Msa0181010:intron 45.0%
! AAAGGCAAGGGGTCAAGTTT+TGG + chr1_4:69092605-69092624 Msa0181010:intron 45.0%
! AAGGCAAGGGGTCAAGTTTT+GGG + chr1_4:69092606-69092625 Msa0181010:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG + chr1_4:69092642-69092661 Msa0181010:CDS 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG + chr1_4:69092686-69092705 Msa0181010:CDS 45.0%
CTAATGGCTATCAACAAGCC+TGG - chr1_4:69093010-69093029 None:intergenic 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG - chr1_4:69093026-69093045 None:intergenic 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG + chr1_4:69093027-69093046 Msa0181010:intron 45.0%
GGGATCACCAGAAGTAACAA+CGG - chr1_4:69093628-69093647 None:intergenic 45.0%
CAATGAGAAACTTGTGGGGT+GGG - chr1_4:69093648-69093667 None:intergenic 45.0%
GACACACATATAGCCGAAGC+TGG - chr1_4:69090561-69090580 None:intergenic 50.0%
TTAGCTGTGACAAAGGCCAG+AGG + chr1_4:69090893-69090912 Msa0181010:CDS 50.0%
TGTGACAAAGGCCAGAGGAA+TGG + chr1_4:69090898-69090917 Msa0181010:CDS 50.0%
TCCTGCAACTTCCATTCCTC+TGG - chr1_4:69090912-69090931 None:intergenic 50.0%
GAAATCGACTACAACCGCTG+TGG - chr1_4:69091395-69091414 None:intergenic 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG + chr1_4:69091862-69091881 Msa0181010:CDS 50.0%
GTTGCTCCAACGCTTTCCAT+AGG + chr1_4:69092084-69092103 Msa0181010:CDS 50.0%
TCCCAAACGAAGACGGAGAA+AGG + chr1_4:69092342-69092361 Msa0181010:intron 50.0%
GACCTTTCTCCGTCTTCGTT+TGG - chr1_4:69092347-69092366 None:intergenic 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG - chr1_4:69092422-69092441 None:intergenic 50.0%
!!! AGGGGTCAAGTTTTGGGAGA+TGG + chr1_4:69092612-69092631 Msa0181010:CDS 50.0%
TGGAATTCGCGTGCACAGTT+TGG + chr1_4:69092632-69092651 Msa0181010:CDS 50.0%
! GTCTTGGAGAGGTATGTCCT+TGG + chr1_4:69092697-69092716 Msa0181010:intron 50.0%
AGCATGTAAGTCTTTCGCGG+TGG + chr1_4:69093513-69093532 Msa0181010:three_prime_UTR 50.0%
CCAATGAGAAACTTGTGGGG+TGG - chr1_4:69093649-69093668 None:intergenic 50.0%
CCACCCCACAAGTTTCTCAT+TGG + chr1_4:69093646-69093665 Msa0181010:three_prime_UTR 50.0%
CACAGAGGCTTGAGCAGCAA+TGG + chr1_4:69090611-69090630 Msa0181010:exon 55.0%
GCCAGAGGAATGGAAGTTGC+AGG + chr1_4:69090908-69090927 Msa0181010:CDS 55.0%
TTTGCAGTCCAAGGCCACAG+CGG + chr1_4:69091378-69091397 Msa0181010:intron 55.0%
CGATTTCACTGACCCTTCCG+CGG + chr1_4:69091408-69091427 Msa0181010:CDS 55.0%
AAGGCCAGCATGGTGAGCAA+GGG + chr1_4:69091872-69091891 Msa0181010:intron 55.0%
GTTGTACTAGAGGGAAGCCC+TGG - chr1_4:69092663-69092682 None:intergenic 55.0%
GACTACAACCGCTGTGGCCT+TGG - chr1_4:69091389-69091408 None:intergenic 60.0%
GAAGGCCAGCATGGTGAGCA+AGG + chr1_4:69091871-69091890 Msa0181010:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG + chr1_4:69091873-69091892 Msa0181010:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG - chr1_4:69091879-69091898 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69090547 69093826 69090547 ID=Msa0181010;Name=Msa0181010
chr1_4 mRNA 69090547 69093826 69090547 ID=Msa0181010-mRNA-1;Parent=Msa0181010;Name=Msa0181010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=83|0.87|1|1|0.75|0.88|9|647|273
chr1_4 exon 69090547 69090749 69090547 ID=Msa0181010-mRNA-1:exon:22935;Parent=Msa0181010-mRNA-1
chr1_4 exon 69090848 69090970 69090848 ID=Msa0181010-mRNA-1:exon:22936;Parent=Msa0181010-mRNA-1
chr1_4 exon 69091206 69091280 69091206 ID=Msa0181010-mRNA-1:exon:22937;Parent=Msa0181010-mRNA-1
chr1_4 exon 69091385 69091450 69091385 ID=Msa0181010-mRNA-1:exon:22938;Parent=Msa0181010-mRNA-1
chr1_4 exon 69091788 69091883 69091788 ID=Msa0181010-mRNA-1:exon:22939;Parent=Msa0181010-mRNA-1
chr1_4 exon 69092075 69092191 69092075 ID=Msa0181010-mRNA-1:exon:22940;Parent=Msa0181010-mRNA-1
chr1_4 exon 69092413 69092505 69092413 ID=Msa0181010-mRNA-1:exon:22941;Parent=Msa0181010-mRNA-1
chr1_4 exon 69092609 69092707 69092609 ID=Msa0181010-mRNA-1:exon:22942;Parent=Msa0181010-mRNA-1
chr1_4 exon 69093147 69093826 69093147 ID=Msa0181010-mRNA-1:exon:22943;Parent=Msa0181010-mRNA-1
chr1_4 five_prime_UTR 69090547 69090629 69090547 ID=Msa0181010-mRNA-1:five_prime_utr;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69090630 69090749 69090630 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69090848 69090970 69090848 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69091206 69091280 69091206 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69091385 69091450 69091385 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69091788 69091883 69091788 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69092075 69092191 69092075 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69092413 69092505 69092413 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69092609 69092707 69092609 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 CDS 69093147 69093179 69093147 ID=Msa0181010-mRNA-1:cds;Parent=Msa0181010-mRNA-1
chr1_4 three_prime_UTR 69093180 69093826 69093180 ID=Msa0181010-mRNA-1:three_prime_utr;Parent=Msa0181010-mRNA-1
Gene Sequence

>Msa0181010

ATGGCAGCCTTAAGTTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAAGCATTCTATAATTTCCTGCTCAGCACAACCTATACAAAGCAATATAAAGGTTGTAATAAATGGAGCAGCAAAGGAAATAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCAGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGCTTTGTGGCATGGAAGATCCTCTTGAAATACCTATACTAAATGACCTTACCATGGTTTTGGGCTCTATATCTCAGTCCAAGGCCACAGCGGTTGTAGTCGATTTCACTGACCCTTCCGCGGTATATGACAATGTAAAACAGGCAACAGCATTTGGCATGAAAAGTGTTGTTTACGTGCCGCGAATCAAATTAGATACGGTTGCAGCATTATCAGCATTCTGTGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGCAAGGGGTCAAGTTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGAACTTAGTATACGGCTTGGAGAAGTTTTTGTGA

Protein sequence

>Msa0181010

MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEDPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQVLGDGIRVHSLVLPGLPSSTTVHFSGLGENLVYGLEKFL*