AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422500 MtrunA17_Chr1g0203761 92.926 311 10 2 1 308 1 302 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422500 AT5G52100.1 70.513 312 74 4 1 308 1 298 3.72e-154 433

Find 90 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATACCATCGTATAATT+TGG 0.146788 tig0025415:-28871 None:intergenic
AAATGACCTTACTATGGTTT+TGG 0.191058 tig0025415:+26637 Msa1422500:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 tig0025415:+26335 Msa1422500:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 tig0025415:-27819 None:intergenic
TATATAGGCTTATCTTGTTT+TGG 0.286059 tig0025415:+26067 None:intergenic
AGCAATCAATTTAGCTAGTT+AGG 0.316369 tig0025415:+28776 Msa1422500:three_prime_UTR
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 tig0025415:-26138 None:intergenic
CAATTTCGACATTGCGGTAA+TGG 0.331384 tig0025415:-27529 None:intergenic
ACAATATAGGCAACAGCATT+TGG 0.347090 tig0025415:+27168 Msa1422500:intron
TATACTAAATGACCTTACTA+TGG 0.353599 tig0025415:+26631 Msa1422500:CDS
CAACATGTTGGGGAAGATAT+TGG 0.357960 tig0025415:+26440 Msa1422500:CDS
CAAATATCATAGACAAGGTT+TGG 0.361438 tig0025415:+28615 Msa1422500:three_prime_UTR
AAAGGCAAGGGGTCAAGCTT+TGG 0.362723 tig0025415:+27988 Msa1422500:intron
TCAGTAGTGTGCAAGTCTTT+TGG 0.369091 tig0025415:+28889 Msa1422500:three_prime_UTR
GTTGCTCCAACGCTTTCAAT+AGG 0.371224 tig0025415:+27467 Msa1422500:CDS
GACTACGACCGCTGTGGCCT+TGG 0.379286 tig0025415:-26779 None:intergenic
CAGAAGCAGAAGCAATATAA+AGG 0.393758 tig0025415:+26235 Msa1422500:CDS
AAGGCAAGGGGTCAAGCTTT+GGG 0.402926 tig0025415:+27989 Msa1422500:intron
CTGATACCATCGTATAATTT+GGG 0.403021 tig0025415:-28870 None:intergenic
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 tig0025415:-27809 None:intergenic
TGGAATTCGCGTGCACAGTT+TGG 0.408268 tig0025415:+28015 Msa1422500:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 tig0025415:+26429 Msa1422500:CDS
AGTAGTTGATGGAATGAAAC+TGG 0.415845 tig0025415:-26127 None:intergenic
ATCTGTGATATCATGCTTGA+TGG 0.417837 tig0025415:-28350 None:intergenic
GCCAGAGGAATGGAAGTTGC+TGG 0.433583 tig0025415:+26404 Msa1422500:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 tig0025415:-27265 None:intergenic
GTTAAATTCAAGCGACTCAC+TGG 0.447324 tig0025415:+28579 Msa1422500:three_prime_UTR
TCCAGCAACTTCCATTCCTC+TGG 0.450267 tig0025415:-26405 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 tig0025415:-27558 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 tig0025415:+26142 Msa1422500:CDS
AGGGGTCAAGCTTTGGGAGA+TGG 0.464250 tig0025415:+27995 Msa1422500:CDS
ACCGTATCTAATTTGATTCG+TGG 0.478498 tig0025415:-27213 None:intergenic
GAAGAACTTGGTATACGGCT+TGG 0.478531 tig0025415:+28521 Msa1422500:intron
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 tig0025415:-27802 None:intergenic
GGAATGAAACTGGCAGCTTA+AGG 0.481987 tig0025415:-26117 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 tig0025415:-27827 None:intergenic
CTAATGGCTAATAGCAAGCC+TGG 0.489682 tig0025415:-28388 None:intergenic
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 tig0025415:+26589 Msa1422500:intron
GCTATTGATACTCAACATGT+TGG 0.498878 tig0025415:+26428 Msa1422500:CDS
ATTGATCCTATTGAAAGCGT+TGG 0.506989 tig0025415:-27473 None:intergenic
AGACTCCTCAACAGATGTCT+TGG 0.508028 tig0025415:+27867 Msa1422500:CDS
TAGAACCCAAAACCATAGTA+AGG 0.510640 tig0025415:-26643 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 tig0025415:+27445 Msa1422500:intron
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 tig0025415:-26629 None:intergenic
CAAGGAGACTTGAGCAGCAA+TGG 0.525714 tig0025415:+26091 Msa1422500:exon
AGGATCAATATTGTTGCAGC+AGG 0.526093 tig0025415:+27487 Msa1422500:CDS
ATCATATGCTAATGCTACCT+TGG 0.539430 tig0025415:+28557 Msa1422500:exon
GTCATACACTGCGGAAGGGT+CGG 0.540214 tig0025415:-26809 None:intergenic
CTAATGTGTAGAGAGAAAAT+CGG 0.542006 tig0025415:-28663 None:intergenic
TGTAATAAATGGAGCAGCAA+AGG 0.543811 tig0025415:+26346 Msa1422500:CDS
GCCAACAATCTCTCTAACCT+CGG 0.544225 tig0025415:+27826 Msa1422500:CDS
TATGATATTTGTCAATATGC+TGG 0.545728 tig0025415:-28603 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 tig0025415:+26382 Msa1422500:CDS
TGTTGGGGAAGATATTGGAC+AGG 0.558324 tig0025415:+26445 Msa1422500:CDS
TTACCGCAATGTCGAAATTG+TGG 0.563978 tig0025415:+27532 Msa1422500:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 tig0025415:+27786 Msa1422500:intron
TCATTCATCTCATACACAAA+GGG 0.565937 tig0025415:+28748 Msa1422500:three_prime_UTR
TGTCGAAATTGTGGAATCCA+AGG 0.571619 tig0025415:+27541 Msa1422500:CDS
GATGTACAATGTCTTATGCC+AGG 0.572407 tig0025415:+28370 Msa1422500:CDS
AAGTGAACTGTTGTACTAGA+GGG 0.580769 tig0025415:-28052 None:intergenic
ACATTGTCATACACTGCGGA+AGG 0.587528 tig0025415:-26814 None:intergenic
AAAGTGAACTGTTGTACTAG+AGG 0.590884 tig0025415:-28053 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 tig0025415:+26394 Msa1422500:CDS
GTCATTCATCTCATACACAA+AGG 0.594699 tig0025415:+28747 Msa1422500:three_prime_UTR
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 tig0025415:-28043 None:intergenic
GCTTCTGCTTCTCAACACAA+AGG 0.596731 tig0025415:-26195 None:intergenic
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 tig0025415:+26353 Msa1422500:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 tig0025415:+26430 Msa1422500:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 tig0025415:-26617 None:intergenic
TACCATCGTATAATTTGGGT+AGG 0.604041 tig0025415:-28866 None:intergenic
ATTATCTGCATTCTGTGAGA+AGG 0.610160 tig0025415:+27242 Msa1422500:CDS
AATAAATGGAGCAGCAAAGG+AGG 0.611168 tig0025415:+26349 Msa1422500:CDS
TAGAAAAGTAGTGCGCCTCA+AGG 0.613059 tig0025415:+28408 Msa1422500:CDS
GCCACGAATCAAATTAGATA+CGG 0.614332 tig0025415:+27212 Msa1422500:CDS
ACCATCGTATAATTTGGGTA+GGG 0.617195 tig0025415:-28865 None:intergenic
CCTTACCAAGACATCTGTTG+AGG 0.630824 tig0025415:-27872 None:intergenic
AGCATTCTGAACGTGACTCG+AGG 0.636599 tig0025415:+28684 Msa1422500:three_prime_UTR
ATTCCACAATTTCGACATTG+CGG 0.643338 tig0025415:-27535 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 tig0025415:-27843 None:intergenic
CATTGTCATACACTGCGGAA+GGG 0.659779 tig0025415:-26813 None:intergenic
GAGTCGCTTGAATTTAACCA+AGG 0.665475 tig0025415:-28574 None:intergenic
ACCCTACCCAAATTATACGA+TGG 0.678918 tig0025415:+28864 Msa1422500:three_prime_UTR
ATGTGTAGAGAGAAAATCGG+AGG 0.684815 tig0025415:-28660 None:intergenic
ATTCTGTGAGAAGGCCAGCA+TGG 0.689417 tig0025415:+27251 Msa1422500:CDS
ATTGACAAATATCATAGACA+AGG 0.690189 tig0025415:+28610 Msa1422500:three_prime_UTR
TATCACACGACAAAGGCAAG+GGG 0.699381 tig0025415:+27977 Msa1422500:intron
GAAATCGACTACGACCGCTG+TGG 0.707192 tig0025415:-26785 None:intergenic
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 tig0025415:+26389 Msa1422500:CDS
TTTGTAGTCCAAGGCCACAG+CGG 0.738213 tig0025415:+26771 Msa1422500:intron
TCATACATTGTCATACACTG+CGG 0.774824 tig0025415:-26818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG + tig0025415:28276-28295 Msa1422500:intron 10.0%
!! TAAATTATATTTGTAGCATT+AGG + tig0025415:27104-27123 Msa1422500:intron 15.0%
!! ATATAAGCACTTAATTAACA+TGG + tig0025415:26553-26572 Msa1422500:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG - tig0025415:26579-26598 None:intergenic 20.0%
!!! TTCATCTTAAATGCATATTT+TGG - tig0025415:26896-26915 None:intergenic 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG + tig0025415:26908-26927 Msa1422500:intron 20.0%
!! AAGACTGATAGTTTATTTAT+TGG + tig0025415:26940-26959 Msa1422500:intron 20.0%
!! AGACTGATAGTTTATTTATT+GGG + tig0025415:26941-26960 Msa1422500:intron 20.0%
!!! TAAATAGATTTTACCATAAG+TGG - tig0025415:27622-27641 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG + tig0025415:27623-27642 Msa1422500:intron 20.0%
!!! TTATATTTTTGTGAGTAAGT+TGG - tig0025415:28135-28154 None:intergenic 20.0%
!!! TTTTTGTTTAAGAGTGCTTA+TGG + tig0025415:26468-26487 Msa1422500:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG - tig0025415:26620-26639 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG - tig0025415:26632-26651 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG + tig0025415:26631-26650 Msa1422500:CDS 25.0%
! TGAATTAGCAATAACAAACT+TGG + tig0025415:26688-26707 Msa1422500:intron 25.0%
! AATGTATGACAATGTAAAAC+AGG + tig0025415:26832-26851 Msa1422500:intron 25.0%
! CGAACATACTTATATATTGT+TGG + tig0025415:26870-26889 Msa1422500:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG + tig0025415:26915-26934 Msa1422500:intron 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG + tig0025415:27046-27065 Msa1422500:intron 25.0%
! TTGATTCTTCTTCACAATAT+AGG + tig0025415:27155-27174 Msa1422500:intron 25.0%
! TAAAGTAGGAAATAACTGAA+AGG - tig0025415:27359-27378 None:intergenic 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG - tig0025415:27373-27392 None:intergenic 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG + tig0025415:27412-27431 Msa1422500:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG - tig0025415:27420-27439 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG + tig0025415:27419-27438 Msa1422500:intron 25.0%
! ATTTGGTTAACTATAATGAC+AGG + tig0025415:27436-27455 Msa1422500:intron 25.0%
! TTTGGTTAACTATAATGACA+GGG + tig0025415:27437-27456 Msa1422500:intron 25.0%
! TTATGTTCAATATCCACTTA+TGG + tig0025415:27606-27625 Msa1422500:intron 25.0%
! AATTATTTATCACACGACAA+AGG + tig0025415:27970-27989 Msa1422500:intron 25.0%
! GCTTAGACTTCAAATAATTA+AGG - tig0025415:28436-28455 None:intergenic 25.0%
!!! TTTTTGAAGAACTTGGTATA+CGG + tig0025415:28516-28535 Msa1422500:intron 25.0%
! TATGATATTTGTCAATATGC+TGG - tig0025415:28606-28625 None:intergenic 25.0%
! ATTGACAAATATCATAGACA+AGG + tig0025415:28610-28629 Msa1422500:three_prime_UTR 25.0%
TTGAGAATTCAAGTAGTTGA+TGG - tig0025415:26141-26160 None:intergenic 30.0%
CAACTACTTGAATTCTCAAA+TGG + tig0025415:26142-26161 Msa1422500:CDS 30.0%
CTATTGATACTCAACATGTT+GGG + tig0025415:26429-26448 Msa1422500:CDS 30.0%
TATTGATACTCAACATGTTG+GGG + tig0025415:26430-26449 Msa1422500:CDS 30.0%
!! TTTAAGAGTGCTTATGGAAA+TGG + tig0025415:26474-26493 Msa1422500:intron 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG + tig0025415:26584-26603 Msa1422500:intron 30.0%
! AAATGACCTTACTATGGTTT+TGG + tig0025415:26637-26656 Msa1422500:CDS 30.0%
! AATGACCTTACTATGGTTTT+GGG + tig0025415:26638-26657 Msa1422500:CDS 30.0%
! AAGCAATTTTTCATAGCTGA+AGG + tig0025415:27018-27037 Msa1422500:intron 30.0%
! AGGAAATGATTTCAAGTGAT+AGG + tig0025415:27038-27057 Msa1422500:intron 30.0%
CATAATCTACTCTTCAATCT+TGG - tig0025415:27072-27091 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG + tig0025415:27072-27091 Msa1422500:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG - tig0025415:27351-27370 None:intergenic 30.0%
TTAGTAGTAGCAGATTTAGT+CGG - tig0025415:27396-27415 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG - tig0025415:27603-27622 None:intergenic 30.0%
AAGAGCTTCTTCAGTATATT+TGG - tig0025415:27767-27786 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG - tig0025415:28100-28119 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG - tig0025415:28304-28323 None:intergenic 30.0%
TGTACTATCTTCTCATTATG+AGG + tig0025415:28307-28326 Msa1422500:intron 30.0%
! CAAATAATTAAGGTACCTTG+AGG - tig0025415:28426-28445 None:intergenic 30.0%
! CTTCTTTTAATCATTCTGCT+TGG + tig0025415:28464-28483 Msa1422500:intron 30.0%
CAAGTTCTTCAAAAATGAAG+GGG - tig0025415:28511-28530 None:intergenic 30.0%
CCAAGTTCTTCAAAAATGAA+GGG - tig0025415:28512-28531 None:intergenic 30.0%
ACCAAGTTCTTCAAAAATGA+AGG - tig0025415:28513-28532 None:intergenic 30.0%
CAAATATCATAGACAAGGTT+TGG + tig0025415:28615-28634 Msa1422500:three_prime_UTR 30.0%
CTAATGTGTAGAGAGAAAAT+CGG - tig0025415:28666-28685 None:intergenic 30.0%
TCATTCATCTCATACACAAA+GGG + tig0025415:28748-28767 Msa1422500:three_prime_UTR 30.0%
AGCAATCAATTTAGCTAGTT+AGG + tig0025415:28776-28795 Msa1422500:three_prime_UTR 30.0%
CTGATACCATCGTATAATTT+GGG - tig0025415:28873-28892 None:intergenic 30.0%
ACTGATACCATCGTATAATT+TGG - tig0025415:28874-28893 None:intergenic 30.0%
!! AGTAGTTGATGGAATGAAAC+TGG - tig0025415:26130-26149 None:intergenic 35.0%
CAGAAGCAGAAGCAATATAA+AGG + tig0025415:26235-26254 Msa1422500:CDS 35.0%
! TCAATTTTCAACACCCTTTG+TGG + tig0025415:26316-26335 Msa1422500:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG - tig0025415:26332-26351 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG - tig0025415:26333-26352 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG + tig0025415:26335-26354 Msa1422500:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG + tig0025415:26346-26365 Msa1422500:CDS 35.0%
GCTATTGATACTCAACATGT+TGG + tig0025415:26428-26447 Msa1422500:CDS 35.0%
TAGAACCCAAAACCATAGTA+AGG - tig0025415:26646-26665 None:intergenic 35.0%
GAATTGCAATTTGTAGTCCA+AGG + tig0025415:26762-26781 Msa1422500:intron 35.0%
TCATACATTGTCATACACTG+CGG - tig0025415:26821-26840 None:intergenic 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG + tig0025415:26844-26863 Msa1422500:intron 35.0%
ACAATATAGGCAACAGCATT+TGG + tig0025415:27168-27187 Msa1422500:intron 35.0%
GCCACGAATCAAATTAGATA+CGG + tig0025415:27212-27231 Msa1422500:CDS 35.0%
! ACCGTATCTAATTTGATTCG+TGG - tig0025415:27216-27235 None:intergenic 35.0%
ATTATCTGCATTCTGTGAGA+AGG + tig0025415:27242-27261 Msa1422500:CDS 35.0%
! ATTGATCCTATTGAAAGCGT+TGG - tig0025415:27476-27495 None:intergenic 35.0%
ATTCCACAATTTCGACATTG+CGG - tig0025415:27538-27557 None:intergenic 35.0%
! TCTTACATTTGCATTAGCCT+TGG - tig0025415:27561-27580 None:intergenic 35.0%
GTTAAGCTAACTTAACTGAC+TGG + tig0025415:27668-27687 Msa1422500:intron 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG + tig0025415:27774-27793 Msa1422500:intron 35.0%
TGTTATACAGGATCTTCCAT+CGG + tig0025415:27786-27805 Msa1422500:intron 35.0%
TAGAGAGATTGTTGGCAATT+TGG - tig0025415:27822-27841 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG - tig0025415:28055-28074 None:intergenic 35.0%
AAAGTGAACTGTTGTACTAG+AGG - tig0025415:28056-28075 None:intergenic 35.0%
!! AGTACAACAGTTCACTTTTC+TGG + tig0025415:28058-28077 Msa1422500:CDS 35.0%
ATCTGTGATATCATGCTTGA+TGG - tig0025415:28353-28372 None:intergenic 35.0%
!! CCCTTCATTTTTGAAGAACT+TGG + tig0025415:28509-28528 Msa1422500:intron 35.0%
ATCATATGCTAATGCTACCT+TGG + tig0025415:28557-28576 Msa1422500:exon 35.0%
GTCATTCATCTCATACACAA+AGG + tig0025415:28747-28766 Msa1422500:three_prime_UTR 35.0%
ACCATCGTATAATTTGGGTA+GGG - tig0025415:28868-28887 None:intergenic 35.0%
TACCATCGTATAATTTGGGT+AGG - tig0025415:28869-28888 None:intergenic 35.0%
!!! GGCTTATCTTGTTTTGGTCA+AGG + tig0025415:26073-26092 Msa1422500:five_prime_UTR 40.0%
AATAAATGGAGCAGCAAAGG+AGG + tig0025415:26349-26368 Msa1422500:CDS 40.0%
AGCAGTATTAGCTGTGACAA+AGG + tig0025415:26382-26401 Msa1422500:CDS 40.0%
CAACATGTTGGGGAAGATAT+TGG + tig0025415:26440-26459 Msa1422500:CDS 40.0%
!!! GGTTTTGGGTTCTATATCTC+AGG + tig0025415:26652-26671 Msa1422500:CDS 40.0%
! ACTATAATGACAGGGTGTCT+TGG + tig0025415:27445-27464 Msa1422500:intron 40.0%
AGGATCAATATTGTTGCAGC+AGG + tig0025415:27487-27506 Msa1422500:CDS 40.0%
CAATTTCGACATTGCGGTAA+TGG - tig0025415:27532-27551 None:intergenic 40.0%
TTACCGCAATGTCGAAATTG+TGG + tig0025415:27532-27551 Msa1422500:CDS 40.0%
TGTCGAAATTGTGGAATCCA+AGG + tig0025415:27541-27560 Msa1422500:CDS 40.0%
TCTTCATTCCCAAACGAAGA+CGG + tig0025415:27718-27737 Msa1422500:intron 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG - tig0025415:27812-27831 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG - tig0025415:27846-27865 None:intergenic 40.0%
TTTATCACACGACAAAGGCA+AGG + tig0025415:27975-27994 Msa1422500:intron 40.0%
TTATCACACGACAAAGGCAA+GGG + tig0025415:27976-27995 Msa1422500:intron 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG + tig0025415:28026-28045 Msa1422500:CDS 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG + tig0025415:28064-28083 Msa1422500:CDS 40.0%
GATGTACAATGTCTTATGCC+AGG + tig0025415:28370-28389 Msa1422500:CDS 40.0%
GAGTCGCTTGAATTTAACCA+AGG - tig0025415:28577-28596 None:intergenic 40.0%
GTTAAATTCAAGCGACTCAC+TGG + tig0025415:28579-28598 Msa1422500:three_prime_UTR 40.0%
ATGTGTAGAGAGAAAATCGG+AGG - tig0025415:28663-28682 None:intergenic 40.0%
ACCCTACCCAAATTATACGA+TGG + tig0025415:28864-28883 Msa1422500:three_prime_UTR 40.0%
! TCAGTAGTGTGCAAGTCTTT+TGG + tig0025415:28889-28908 Msa1422500:three_prime_UTR 40.0%
GGAATGAAACTGGCAGCTTA+AGG - tig0025415:26120-26139 None:intergenic 45.0%
GCTTCTGCTTCTCAACACAA+AGG - tig0025415:26198-26217 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG + tig0025415:26322-26341 Msa1422500:intron 45.0%
TGTTGGGGAAGATATTGGAC+AGG + tig0025415:26445-26464 Msa1422500:CDS 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG + tig0025415:26589-26608 Msa1422500:intron 45.0%
CATTGTCATACACTGCGGAA+GGG - tig0025415:26816-26835 None:intergenic 45.0%
ACATTGTCATACACTGCGGA+AGG - tig0025415:26817-26836 None:intergenic 45.0%
GTTGCTCCAACGCTTTCAAT+AGG + tig0025415:27467-27486 Msa1422500:CDS 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG - tig0025415:27729-27748 None:intergenic 45.0%
GCCAACAATCTCTCTAACCT+CGG + tig0025415:27826-27845 Msa1422500:CDS 45.0%
ACCGAGGTTAGAGAGATTGT+TGG - tig0025415:27830-27849 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG + tig0025415:27867-27886 Msa1422500:CDS 45.0%
CCTTACCAAGACATCTGTTG+AGG - tig0025415:27875-27894 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG + tig0025415:27872-27891 Msa1422500:intron 45.0%
TATCACACGACAAAGGCAAG+GGG + tig0025415:27977-27996 Msa1422500:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG + tig0025415:28025-28044 Msa1422500:CDS 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG + tig0025415:28069-28088 Msa1422500:CDS 45.0%
CTAATGGCTAATAGCAAGCC+TGG - tig0025415:28391-28410 None:intergenic 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG - tig0025415:28407-28426 None:intergenic 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG + tig0025415:28408-28427 Msa1422500:CDS 45.0%
GAAGAACTTGGTATACGGCT+TGG + tig0025415:28521-28540 Msa1422500:intron 45.0%
! CGTGACTCGAGGATTTTGTA+AGG + tig0025415:28695-28714 Msa1422500:three_prime_UTR 45.0%
! GTAGTGTGCAAGTCTTTTGG+TGG + tig0025415:28892-28911 Msa1422500:three_prime_UTR 45.0%
CAAGGAGACTTGAGCAGCAA+TGG + tig0025415:26091-26110 Msa1422500:exon 50.0%
AATGGAGCAGCAAAGGAGGT+AGG + tig0025415:26353-26372 Msa1422500:CDS 50.0%
TTAGCTGTGACAAAGGCCAG+AGG + tig0025415:26389-26408 Msa1422500:CDS 50.0%
TGTGACAAAGGCCAGAGGAA+TGG + tig0025415:26394-26413 Msa1422500:CDS 50.0%
TCCAGCAACTTCCATTCCTC+TGG - tig0025415:26408-26427 None:intergenic 50.0%
CTTCCATGCCACAAAGCTAC+AGG - tig0025415:26595-26614 None:intergenic 50.0%
TTTGTAGTCCAAGGCCACAG+CGG + tig0025415:26771-26790 Msa1422500:intron 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG + tig0025415:27251-27270 Msa1422500:CDS 50.0%
TCCCAAACGAAGACGGAGAA+AGG + tig0025415:27725-27744 Msa1422500:intron 50.0%
GACCTTTCTCCGTCTTCGTT+TGG - tig0025415:27730-27749 None:intergenic 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG - tig0025415:27805-27824 None:intergenic 50.0%
AAAGGCAAGGGGTCAAGCTT+TGG + tig0025415:27988-28007 Msa1422500:intron 50.0%
AAGGCAAGGGGTCAAGCTTT+GGG + tig0025415:27989-28008 Msa1422500:intron 50.0%
TGGAATTCGCGTGCACAGTT+TGG + tig0025415:28015-28034 Msa1422500:CDS 50.0%
AGCATTCTGAACGTGACTCG+AGG + tig0025415:28684-28703 Msa1422500:three_prime_UTR 50.0%
GCCAGAGGAATGGAAGTTGC+TGG + tig0025415:26404-26423 Msa1422500:CDS 55.0%
GAAATCGACTACGACCGCTG+TGG - tig0025415:26788-26807 None:intergenic 55.0%
GTCATACACTGCGGAAGGGT+CGG - tig0025415:26812-26831 None:intergenic 55.0%
AAGGCCAGCATGGTGAGCAA+GGG + tig0025415:27261-27280 Msa1422500:intron 55.0%
!! AGGGGTCAAGCTTTGGGAGA+TGG + tig0025415:27995-28014 Msa1422500:CDS 55.0%
GTTGTACTAGAGGGAAGCCC+TGG - tig0025415:28046-28065 None:intergenic 55.0%
! GTCTTGGAGAGGCATGTCCT+TGG + tig0025415:28080-28099 Msa1422500:intron 55.0%
GAAGGCCAGCATGGTGAGCA+AGG + tig0025415:27260-27279 Msa1422500:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG + tig0025415:27262-27281 Msa1422500:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG - tig0025415:27268-27287 None:intergenic 60.0%
GACTACGACCGCTGTGGCCT+TGG - tig0025415:26782-26801 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0025415 gene 26069 28935 26069 ID=Msa1422500;Name=Msa1422500
tig0025415 mRNA 26069 28935 26069 ID=Msa1422500-mRNA-1;Parent=Msa1422500;Name=Msa1422500-mRNA-1;_AED=0.14;_eAED=0.14;_QI=41|0.88|0.9|1|1|1|10|378|308
tig0025415 exon 26069 26256 26069 ID=Msa1422500-mRNA-1:exon:2639;Parent=Msa1422500-mRNA-1
tig0025415 exon 26344 26466 26344 ID=Msa1422500-mRNA-1:exon:2640;Parent=Msa1422500-mRNA-1
tig0025415 exon 26599 26673 26599 ID=Msa1422500-mRNA-1:exon:2641;Parent=Msa1422500-mRNA-1
tig0025415 exon 26778 26834 26778 ID=Msa1422500-mRNA-1:exon:2642;Parent=Msa1422500-mRNA-1
tig0025415 exon 27177 27272 27177 ID=Msa1422500-mRNA-1:exon:2643;Parent=Msa1422500-mRNA-1
tig0025415 exon 27458 27574 27458 ID=Msa1422500-mRNA-1:exon:2644;Parent=Msa1422500-mRNA-1
tig0025415 exon 27796 27888 27796 ID=Msa1422500-mRNA-1:exon:2645;Parent=Msa1422500-mRNA-1
tig0025415 exon 27992 28090 27992 ID=Msa1422500-mRNA-1:exon:2646;Parent=Msa1422500-mRNA-1
tig0025415 exon 28343 28429 28343 ID=Msa1422500-mRNA-1:exon:2647;Parent=Msa1422500-mRNA-1
tig0025415 exon 28525 28935 28525 ID=Msa1422500-mRNA-1:exon:2648;Parent=Msa1422500-mRNA-1
tig0025415 five_prime_UTR 26069 26109 26069 ID=Msa1422500-mRNA-1:five_prime_utr;Parent=Msa1422500-mRNA-1
tig0025415 CDS 26110 26256 26110 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 26344 26466 26344 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 26599 26673 26599 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 26778 26834 26778 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 27177 27272 27177 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 27458 27574 27458 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 27796 27888 27796 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 27992 28090 27992 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 28343 28429 28343 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 CDS 28525 28557 28525 ID=Msa1422500-mRNA-1:cds;Parent=Msa1422500-mRNA-1
tig0025415 three_prime_UTR 28558 28935 28558 ID=Msa1422500-mRNA-1:three_prime_utr;Parent=Msa1422500-mRNA-1
Gene Sequence

>Msa1422500

ATGGCTGCCTTAAGCTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAATCATTCTATAATTTCCTTTGTGTTGAGAAGCAGAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGAAGCAATATAAAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGCTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGTTCTATATCTCAGTCCAAGGCCACAGCGGTCGTAGTCGATTTCACCGACCCTTCCGCAGTGTATGACAATGCAACAGCATTTGGCATGAAAAGTGTTGTGTACGTGCCACGAATCAAATTAGATACGGTTGCAGCATTATCTGCATTCTGTGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCAATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGCAAGGGGTCAAGCTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGATTTACACCATCAAGCATGATATCACAGATGTACAATGTCTTATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAACTTGGTATACGGCTTGGAGAAGTTTTTGTGA

Protein sequence

>Msa1422500

MAALSCQFHSINYLNSQMVKSRSNHSIISFVLRSRSKSRSRSRSRSNIKVVINGAAKEVGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQALGDGIRVHSLVLPGLPSSTTVHFSGLGEIYTIKHDITDVQCLMPGLLLAIRKVVRLKNLVYGLEKFL*