AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181020 MtrunA17_Chr1g0203761 97.351 302 5 1 1 299 1 302 0.0 597
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181020 AT5G52100.1 73.684 304 69 5 1 299 1 298 5.23e-158 442

Find 95 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATACCATCGTATAATT+TGG 0.146788 1_4:-69119081 None:intergenic
AAATGACCTTACTATGGTTT+TGG 0.191058 1_4:+69116841 Msa0181020:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 1_4:+69116436 Msa0181020:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 1_4:-69118029 None:intergenic
TATATAGGCTTATCTTGTTT+TGG 0.286059 1_4:+69116195 Msa0181020:five_prime_UTR
AGCAATCAATTTAGCTAGTT+AGG 0.316369 1_4:+69118986 Msa0181020:three_prime_UTR
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 1_4:-69116266 None:intergenic
CAATTTCGACATTGCGGTAA+TGG 0.331384 1_4:-69117739 None:intergenic
ACAATATAGGCAACAGCATT+TGG 0.347090 1_4:+69117372 Msa0181020:intron
TATACTAAATGACCTTACTA+TGG 0.353599 1_4:+69116835 Msa0181020:CDS
CAACATGTTGGGGAAGATAT+TGG 0.357960 1_4:+69116541 Msa0181020:CDS
CAAATATCATAGACAAGGTT+TGG 0.361438 1_4:+69118825 Msa0181020:three_prime_UTR
AAAGGCAAGGGGTCAAGCTT+TGG 0.362723 1_4:+69118198 Msa0181020:intron
TCAGTAGTGTGCAAGTCTTT+TGG 0.369091 1_4:+69119099 Msa0181020:three_prime_UTR
GACTACGACCGCTGTGGCCT+TGG 0.379286 1_4:-69116983 None:intergenic
ACCTATACAAAGCAATATAA+AGG 0.399746 1_4:+69116336 Msa0181020:CDS
ATGCGTGTCACAAAATATAT+AGG 0.401929 1_4:+69116180 Msa0181020:five_prime_UTR
AAGGCAAGGGGTCAAGCTTT+GGG 0.402926 1_4:+69118199 Msa0181020:intron
CTGATACCATCGTATAATTT+GGG 0.403021 1_4:-69119080 None:intergenic
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 1_4:-69118019 None:intergenic
TGGAATTCGCGTGCACAGTT+TGG 0.408268 1_4:+69118225 Msa0181020:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 1_4:+69116530 Msa0181020:CDS
CTGCAACAATATTGATCCTA+TGG 0.409023 1_4:-69117693 None:intergenic
AGTAGTTGATGGAATGAAAC+TGG 0.415845 1_4:-69116255 None:intergenic
ATCTGTGATATCATGCTTGA+TGG 0.417837 1_4:-69118560 None:intergenic
GCCAGAGGAATGGAAGTTGC+TGG 0.433583 1_4:+69116505 Msa0181020:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 1_4:-69117469 None:intergenic
ACCTTTATATTGCTTTGTAT+AGG 0.435394 1_4:-69116337 None:intergenic
GTTAAATTCAAGCGACTCAC+TGG 0.447324 1_4:+69118789 Msa0181020:three_prime_UTR
TTGTATAGGTTGTGCTGTGC+AGG 0.447611 1_4:-69116323 None:intergenic
TCCAGCAACTTCCATTCCTC+TGG 0.450267 1_4:-69116506 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 1_4:-69117768 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 1_4:+69116270 Msa0181020:CDS
AGGGGTCAAGCTTTGGGAGA+TGG 0.464250 1_4:+69118205 Msa0181020:CDS
ACCGTATCTAATTTGATTCG+TGG 0.478498 1_4:-69117417 None:intergenic
GAAGAACTTGGTATACGGCT+TGG 0.478531 1_4:+69118731 Msa0181020:intron
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 1_4:-69118012 None:intergenic
GGAATGAAACTGGCAGCTTA+AGG 0.481987 1_4:-69116245 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 1_4:-69118037 None:intergenic
GTGACACGCATAGTTTGAGC+TGG 0.485154 1_4:-69116168 None:intergenic
CTAATGGCTAATAGCAAGCC+TGG 0.489682 1_4:-69118598 None:intergenic
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 1_4:+69116793 Msa0181020:intron
GCTATTGATACTCAACATGT+TGG 0.498878 1_4:+69116529 Msa0181020:CDS
AGACTCCTCAACAGATGTCT+TGG 0.508028 1_4:+69118077 Msa0181020:CDS
GTTGCTCCAACGCTTTCCAT+AGG 0.508224 1_4:+69117677 Msa0181020:CDS
TAGAACCCAAAACCATAGTA+AGG 0.510640 1_4:-69116847 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 1_4:+69117655 Msa0181020:intron
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 1_4:-69116833 None:intergenic
CAAGGAGACTTGAGCAGCAA+TGG 0.525714 1_4:+69116219 Msa0181020:exon
AGGATCAATATTGTTGCAGC+AGG 0.526093 1_4:+69117697 Msa0181020:CDS
ATCATATGCTAATGCTACCT+TGG 0.539430 1_4:+69118767 Msa0181020:exon
GTCATACACTGCGGAAGGGT+CGG 0.540214 1_4:-69117013 None:intergenic
CTAATGTGTAGAGAGAAAAT+CGG 0.542006 1_4:-69118873 None:intergenic
TGTAATAAATGGAGCAGCAA+AGG 0.543811 1_4:+69116447 Msa0181020:CDS
GCCAACAATCTCTCTAACCT+CGG 0.544225 1_4:+69118036 Msa0181020:CDS
TATGATATTTGTCAATATGC+TGG 0.545728 1_4:-69118813 None:intergenic
AGCAGTATTAGCTGTGACAA+AGG 0.549949 1_4:+69116483 Msa0181020:CDS
TGTTGGGGAAGATATTGGAC+AGG 0.558324 1_4:+69116546 Msa0181020:CDS
TTACCGCAATGTCGAAATTG+TGG 0.563978 1_4:+69117742 Msa0181020:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 1_4:+69117996 Msa0181020:intron
TCATTCATCTCATACACAAA+GGG 0.565937 1_4:+69118958 Msa0181020:three_prime_UTR
TGTCGAAATTGTGGAATCCA+AGG 0.571619 1_4:+69117751 Msa0181020:CDS
ATTGATCCTATGGAAAGCGT+TGG 0.571844 1_4:-69117683 None:intergenic
GATGTACAATGTCTTATGCC+AGG 0.572407 1_4:+69118580 Msa0181020:CDS
TGACACGCATAGTTTGAGCT+GGG 0.579912 1_4:-69116167 None:intergenic
AAGTGAACTGTTGTACTAGA+GGG 0.580769 1_4:-69118262 None:intergenic
ACATTGTCATACACTGCGGA+AGG 0.587528 1_4:-69117018 None:intergenic
AAAGTGAACTGTTGTACTAG+AGG 0.590884 1_4:-69118263 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 1_4:+69116495 Msa0181020:CDS
GTCATTCATCTCATACACAA+AGG 0.594699 1_4:+69118957 Msa0181020:three_prime_UTR
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 1_4:-69118253 None:intergenic
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 1_4:+69116454 Msa0181020:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 1_4:+69116531 Msa0181020:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 1_4:-69116821 None:intergenic
TACCATCGTATAATTTGGGT+AGG 0.604041 1_4:-69119076 None:intergenic
ATTATCTGCATTCTGTGAGA+AGG 0.610160 1_4:+69117446 Msa0181020:CDS
AATAAATGGAGCAGCAAAGG+AGG 0.611168 1_4:+69116450 Msa0181020:CDS
TAGAAAAGTAGTGCGCCTCA+AGG 0.613059 1_4:+69118618 Msa0181020:CDS
GCCACGAATCAAATTAGATA+CGG 0.614332 1_4:+69117416 Msa0181020:CDS
ACCATCGTATAATTTGGGTA+GGG 0.617195 1_4:-69119075 None:intergenic
CCTTACCAAGACATCTGTTG+AGG 0.630824 1_4:-69118082 None:intergenic
AGCATTCTGAACGTGACTCG+AGG 0.636599 1_4:+69118894 Msa0181020:three_prime_UTR
ATTCCACAATTTCGACATTG+CGG 0.643338 1_4:-69117745 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 1_4:-69118053 None:intergenic
CATTGTCATACACTGCGGAA+GGG 0.659779 1_4:-69117017 None:intergenic
GAGTCGCTTGAATTTAACCA+AGG 0.665475 1_4:-69118784 None:intergenic
ACCCTACCCAAATTATACGA+TGG 0.678918 1_4:+69119074 Msa0181020:three_prime_UTR
ATGTGTAGAGAGAAAATCGG+AGG 0.682375 1_4:-69118870 None:intergenic
ATTCTGTGAGAAGGCCAGCA+TGG 0.689417 1_4:+69117455 Msa0181020:CDS
ATTGACAAATATCATAGACA+AGG 0.690189 1_4:+69118820 Msa0181020:three_prime_UTR
TATCACACGACAAAGGCAAG+GGG 0.699381 1_4:+69118187 Msa0181020:intron
GAAATCGACTACGACCGCTG+TGG 0.707192 1_4:-69116989 None:intergenic
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 1_4:+69116490 Msa0181020:CDS
TTTGTAGTCCAAGGCCACAG+CGG 0.738213 1_4:+69116975 Msa0181020:intron
TCATACATTGTCATACACTG+CGG 0.774824 1_4:-69117022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG + chr1_4:69118486-69118505 Msa0181020:intron 10.0%
!! TTATATAAGCACTTAATTAA+CGG + chr1_4:69116755-69116774 Msa0181020:intron 15.0%
!! TAAATTATATTTGTAGCATT+AGG + chr1_4:69117308-69117327 Msa0181020:intron 15.0%
!!! TGTTATAAGTTGTTTTCATA+AGG - chr1_4:69116656-69116675 None:intergenic 20.0%
!! TATATAAGCACTTAATTAAC+GGG + chr1_4:69116756-69116775 Msa0181020:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG - chr1_4:69116783-69116802 None:intergenic 20.0%
!!! TTCATCTTAAATGCATATTT+TGG - chr1_4:69117100-69117119 None:intergenic 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG + chr1_4:69117112-69117131 Msa0181020:intron 20.0%
!! AAGACTGATAGTTTATTTAT+CGG + chr1_4:69117144-69117163 Msa0181020:intron 20.0%
!!! TAAATAGATTTTACCATAAG+TGG - chr1_4:69117832-69117851 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG + chr1_4:69117833-69117852 Msa0181020:intron 20.0%
!!! TTATATTTTTGTGAGTAAGT+TGG - chr1_4:69118345-69118364 None:intergenic 20.0%
!!! TATATAGGCTTATCTTGTTT+TGG + chr1_4:69116195-69116214 Msa0181020:five_prime_UTR 25.0%
! ACCTATACAAAGCAATATAA+AGG + chr1_4:69116336-69116355 Msa0181020:CDS 25.0%
! ACCTTTATATTGCTTTGTAT+AGG - chr1_4:69116340-69116359 None:intergenic 25.0%
!!! TTTTTGTTTAAGACAGCTTA+TGG + chr1_4:69116569-69116588 Msa0181020:intron 25.0%
! ATATAAGCACTTAATTAACG+GGG + chr1_4:69116757-69116776 Msa0181020:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG - chr1_4:69116824-69116843 None:intergenic 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG - chr1_4:69116836-69116855 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG + chr1_4:69116835-69116854 Msa0181020:CDS 25.0%
! TGAATTAGCAATAACAAACT+TGG + chr1_4:69116892-69116911 Msa0181020:intron 25.0%
! AATGTATGACAATGTAAAAC+AGG + chr1_4:69117036-69117055 Msa0181020:intron 25.0%
! CGAACATACTTATATATTGT+TGG + chr1_4:69117074-69117093 Msa0181020:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG + chr1_4:69117119-69117138 Msa0181020:intron 25.0%
! AGACTGATAGTTTATTTATC+GGG + chr1_4:69117145-69117164 Msa0181020:intron 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG + chr1_4:69117250-69117269 Msa0181020:intron 25.0%
! TTGATTCTTCTTCACAATAT+AGG + chr1_4:69117359-69117378 Msa0181020:intron 25.0%
! TAAAGTAGGAAATAACTGAA+AGG - chr1_4:69117569-69117588 None:intergenic 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG - chr1_4:69117583-69117602 None:intergenic 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG + chr1_4:69117622-69117641 Msa0181020:intron 25.0%
! AAATGCCAAAAAAGAACAAA+TGG - chr1_4:69117630-69117649 None:intergenic 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG + chr1_4:69117629-69117648 Msa0181020:intron 25.0%
! ATTTGGTTAACTATAATGAC+AGG + chr1_4:69117646-69117665 Msa0181020:intron 25.0%
! TTTGGTTAACTATAATGACA+GGG + chr1_4:69117647-69117666 Msa0181020:intron 25.0%
! TTATGTTCAATATCCACTTA+TGG + chr1_4:69117816-69117835 Msa0181020:intron 25.0%
! AATTATTTATCACACGACAA+AGG + chr1_4:69118180-69118199 Msa0181020:intron 25.0%
! GCTTAGACTTCAAATAATTA+AGG - chr1_4:69118646-69118665 None:intergenic 25.0%
!!! TTTTTGAAGAACTTGGTATA+CGG + chr1_4:69118726-69118745 Msa0181020:intron 25.0%
! TATGATATTTGTCAATATGC+TGG - chr1_4:69118816-69118835 None:intergenic 25.0%
! ATTGACAAATATCATAGACA+AGG + chr1_4:69118820-69118839 Msa0181020:three_prime_UTR 25.0%
ATGCGTGTCACAAAATATAT+AGG + chr1_4:69116180-69116199 Msa0181020:five_prime_UTR 30.0%
TTGAGAATTCAAGTAGTTGA+TGG - chr1_4:69116269-69116288 None:intergenic 30.0%
CAACTACTTGAATTCTCAAA+TGG + chr1_4:69116270-69116289 Msa0181020:CDS 30.0%
CTATTGATACTCAACATGTT+GGG + chr1_4:69116530-69116549 Msa0181020:CDS 30.0%
TATTGATACTCAACATGTTG+GGG + chr1_4:69116531-69116550 Msa0181020:CDS 30.0%
! TTTAAGACAGCTTATGGAAA+TGG + chr1_4:69116575-69116594 Msa0181020:intron 30.0%
AATGAGCTGAAAACAACTTA+TGG - chr1_4:69116613-69116632 None:intergenic 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG + chr1_4:69116788-69116807 Msa0181020:intron 30.0%
! AAATGACCTTACTATGGTTT+TGG + chr1_4:69116841-69116860 Msa0181020:CDS 30.0%
! AATGACCTTACTATGGTTTT+GGG + chr1_4:69116842-69116861 Msa0181020:CDS 30.0%
! AAGCAATTTTTCATAGCTGA+AGG + chr1_4:69117222-69117241 Msa0181020:intron 30.0%
! AGGAAATGATTTCAAGTGAT+AGG + chr1_4:69117242-69117261 Msa0181020:intron 30.0%
CATAATCTACTCTTCAATCT+TGG - chr1_4:69117276-69117295 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG + chr1_4:69117276-69117295 Msa0181020:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG - chr1_4:69117561-69117580 None:intergenic 30.0%
TTAGTAGTAGCAGATTTAGT+CGG - chr1_4:69117606-69117625 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG - chr1_4:69117813-69117832 None:intergenic 30.0%
AAGAGCTTCTTCAGTATATT+TGG - chr1_4:69117977-69117996 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG - chr1_4:69118310-69118329 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG - chr1_4:69118514-69118533 None:intergenic 30.0%
TGTACTATCTTCTCATTATG+AGG + chr1_4:69118517-69118536 Msa0181020:intron 30.0%
! CAAATAATTAAGGTACCTTG+AGG - chr1_4:69118636-69118655 None:intergenic 30.0%
! CTTCTTTTAATCATTCTGCT+TGG + chr1_4:69118674-69118693 Msa0181020:intron 30.0%
CAAGTTCTTCAAAAATGAAG+GGG - chr1_4:69118721-69118740 None:intergenic 30.0%
CCAAGTTCTTCAAAAATGAA+GGG - chr1_4:69118722-69118741 None:intergenic 30.0%
ACCAAGTTCTTCAAAAATGA+AGG - chr1_4:69118723-69118742 None:intergenic 30.0%
CAAATATCATAGACAAGGTT+TGG + chr1_4:69118825-69118844 Msa0181020:three_prime_UTR 30.0%
CTAATGTGTAGAGAGAAAAT+CGG - chr1_4:69118876-69118895 None:intergenic 30.0%
TCATTCATCTCATACACAAA+GGG + chr1_4:69118958-69118977 Msa0181020:three_prime_UTR 30.0%
AGCAATCAATTTAGCTAGTT+AGG + chr1_4:69118986-69119005 Msa0181020:three_prime_UTR 30.0%
CTGATACCATCGTATAATTT+GGG - chr1_4:69119083-69119102 None:intergenic 30.0%
ACTGATACCATCGTATAATT+TGG - chr1_4:69119084-69119103 None:intergenic 30.0%
!! AGTAGTTGATGGAATGAAAC+TGG - chr1_4:69116258-69116277 None:intergenic 35.0%
! TCAATTTTCAACACCCTTTG+TGG + chr1_4:69116417-69116436 Msa0181020:intron 35.0%
ATTACAACCTGTTCCACAAA+GGG - chr1_4:69116433-69116452 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG - chr1_4:69116434-69116453 None:intergenic 35.0%
GTGGAACAGGTTGTAATAAA+TGG + chr1_4:69116436-69116455 Msa0181020:intron 35.0%
TGTAATAAATGGAGCAGCAA+AGG + chr1_4:69116447-69116466 Msa0181020:CDS 35.0%
GCTATTGATACTCAACATGT+TGG + chr1_4:69116529-69116548 Msa0181020:CDS 35.0%
!! AGTTGTTTTCATAAGGCTAG+AGG - chr1_4:69116699-69116718 None:intergenic 35.0%
TAGAACCCAAAACCATAGTA+AGG - chr1_4:69116850-69116869 None:intergenic 35.0%
GAATTGCAATTTGTAGTCCA+AGG + chr1_4:69116966-69116985 Msa0181020:intron 35.0%
TCATACATTGTCATACACTG+CGG - chr1_4:69117025-69117044 None:intergenic 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG + chr1_4:69117048-69117067 Msa0181020:intron 35.0%
ACAATATAGGCAACAGCATT+TGG + chr1_4:69117372-69117391 Msa0181020:intron 35.0%
GCCACGAATCAAATTAGATA+CGG + chr1_4:69117416-69117435 Msa0181020:CDS 35.0%
! ACCGTATCTAATTTGATTCG+TGG - chr1_4:69117420-69117439 None:intergenic 35.0%
ATTATCTGCATTCTGTGAGA+AGG + chr1_4:69117446-69117465 Msa0181020:CDS 35.0%
CTGCAACAATATTGATCCTA+TGG - chr1_4:69117696-69117715 None:intergenic 35.0%
ATTCCACAATTTCGACATTG+CGG - chr1_4:69117748-69117767 None:intergenic 35.0%
! TCTTACATTTGCATTAGCCT+TGG - chr1_4:69117771-69117790 None:intergenic 35.0%
GTTAAGCTAACTTAACTGAC+TGG + chr1_4:69117878-69117897 Msa0181020:intron 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG + chr1_4:69117984-69118003 Msa0181020:intron 35.0%
TGTTATACAGGATCTTCCAT+CGG + chr1_4:69117996-69118015 Msa0181020:intron 35.0%
TAGAGAGATTGTTGGCAATT+TGG - chr1_4:69118032-69118051 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG - chr1_4:69118265-69118284 None:intergenic 35.0%
AAAGTGAACTGTTGTACTAG+AGG - chr1_4:69118266-69118285 None:intergenic 35.0%
!! AGTACAACAGTTCACTTTTC+TGG + chr1_4:69118268-69118287 Msa0181020:CDS 35.0%
ATCTGTGATATCATGCTTGA+TGG - chr1_4:69118563-69118582 None:intergenic 35.0%
!! CCCTTCATTTTTGAAGAACT+TGG + chr1_4:69118719-69118738 Msa0181020:intron 35.0%
ATCATATGCTAATGCTACCT+TGG + chr1_4:69118767-69118786 Msa0181020:exon 35.0%
GTCATTCATCTCATACACAA+AGG + chr1_4:69118957-69118976 Msa0181020:three_prime_UTR 35.0%
ACCATCGTATAATTTGGGTA+GGG - chr1_4:69119078-69119097 None:intergenic 35.0%
TACCATCGTATAATTTGGGT+AGG - chr1_4:69119079-69119098 None:intergenic 35.0%
!!! GGCTTATCTTGTTTTGGTCA+AGG + chr1_4:69116201-69116220 Msa0181020:five_prime_UTR 40.0%
AATAAATGGAGCAGCAAAGG+AGG + chr1_4:69116450-69116469 Msa0181020:CDS 40.0%
AGCAGTATTAGCTGTGACAA+AGG + chr1_4:69116483-69116502 Msa0181020:CDS 40.0%
CAACATGTTGGGGAAGATAT+TGG + chr1_4:69116541-69116560 Msa0181020:CDS 40.0%
TTTCGATAAGCTTTCCACGA+TGG + chr1_4:69116631-69116650 Msa0181020:intron 40.0%
!! GTTGTTTTCATAAGCCATCG+TGG - chr1_4:69116648-69116667 None:intergenic 40.0%
!!! GGTTTTGGGTTCTATATCTC+AGG + chr1_4:69116856-69116875 Msa0181020:CDS 40.0%
! ACTATAATGACAGGGTGTCT+TGG + chr1_4:69117655-69117674 Msa0181020:intron 40.0%
! ATTGATCCTATGGAAAGCGT+TGG - chr1_4:69117686-69117705 None:intergenic 40.0%
AGGATCAATATTGTTGCAGC+AGG + chr1_4:69117697-69117716 Msa0181020:CDS 40.0%
CAATTTCGACATTGCGGTAA+TGG - chr1_4:69117742-69117761 None:intergenic 40.0%
TTACCGCAATGTCGAAATTG+TGG + chr1_4:69117742-69117761 Msa0181020:CDS 40.0%
TGTCGAAATTGTGGAATCCA+AGG + chr1_4:69117751-69117770 Msa0181020:CDS 40.0%
TCTTCATTCCCAAACGAAGA+CGG + chr1_4:69117928-69117947 Msa0181020:intron 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG - chr1_4:69118022-69118041 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG - chr1_4:69118056-69118075 None:intergenic 40.0%
TTTATCACACGACAAAGGCA+AGG + chr1_4:69118185-69118204 Msa0181020:intron 40.0%
TTATCACACGACAAAGGCAA+GGG + chr1_4:69118186-69118205 Msa0181020:intron 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG + chr1_4:69118236-69118255 Msa0181020:CDS 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG + chr1_4:69118274-69118293 Msa0181020:CDS 40.0%
GATGTACAATGTCTTATGCC+AGG + chr1_4:69118580-69118599 Msa0181020:CDS 40.0%
GAGTCGCTTGAATTTAACCA+AGG - chr1_4:69118787-69118806 None:intergenic 40.0%
GTTAAATTCAAGCGACTCAC+TGG + chr1_4:69118789-69118808 Msa0181020:three_prime_UTR 40.0%
ATGTGTAGAGAGAAAATCGG+AGG - chr1_4:69118873-69118892 None:intergenic 40.0%
ACCCTACCCAAATTATACGA+TGG + chr1_4:69119074-69119093 Msa0181020:three_prime_UTR 40.0%
! TCAGTAGTGTGCAAGTCTTT+TGG + chr1_4:69119099-69119118 Msa0181020:three_prime_UTR 40.0%
TGACACGCATAGTTTGAGCT+GGG - chr1_4:69116170-69116189 None:intergenic 45.0%
GGAATGAAACTGGCAGCTTA+AGG - chr1_4:69116248-69116267 None:intergenic 45.0%
TTGTATAGGTTGTGCTGTGC+AGG - chr1_4:69116326-69116345 None:intergenic 45.0%
TTCAACACCCTTTGTGGAAC+AGG + chr1_4:69116423-69116442 Msa0181020:intron 45.0%
TGTTGGGGAAGATATTGGAC+AGG + chr1_4:69116546-69116565 Msa0181020:CDS 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG + chr1_4:69116793-69116812 Msa0181020:intron 45.0%
CATTGTCATACACTGCGGAA+GGG - chr1_4:69117020-69117039 None:intergenic 45.0%
ACATTGTCATACACTGCGGA+AGG - chr1_4:69117021-69117040 None:intergenic 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG - chr1_4:69117939-69117958 None:intergenic 45.0%
GCCAACAATCTCTCTAACCT+CGG + chr1_4:69118036-69118055 Msa0181020:CDS 45.0%
ACCGAGGTTAGAGAGATTGT+TGG - chr1_4:69118040-69118059 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG + chr1_4:69118077-69118096 Msa0181020:CDS 45.0%
CCTTACCAAGACATCTGTTG+AGG - chr1_4:69118085-69118104 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG + chr1_4:69118082-69118101 Msa0181020:intron 45.0%
TATCACACGACAAAGGCAAG+GGG + chr1_4:69118187-69118206 Msa0181020:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG + chr1_4:69118235-69118254 Msa0181020:CDS 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG + chr1_4:69118279-69118298 Msa0181020:CDS 45.0%
CTAATGGCTAATAGCAAGCC+TGG - chr1_4:69118601-69118620 None:intergenic 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG - chr1_4:69118617-69118636 None:intergenic 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG + chr1_4:69118618-69118637 Msa0181020:CDS 45.0%
GAAGAACTTGGTATACGGCT+TGG + chr1_4:69118731-69118750 Msa0181020:intron 45.0%
! CGTGACTCGAGGATTTTGTA+AGG + chr1_4:69118905-69118924 Msa0181020:three_prime_UTR 45.0%
! GTAGTGTGCAAGTCTTTTGG+TGG + chr1_4:69119102-69119121 Msa0181020:three_prime_UTR 45.0%
GTGACACGCATAGTTTGAGC+TGG - chr1_4:69116171-69116190 None:intergenic 50.0%
CAAGGAGACTTGAGCAGCAA+TGG + chr1_4:69116219-69116238 Msa0181020:exon 50.0%
AATGGAGCAGCAAAGGAGGT+AGG + chr1_4:69116454-69116473 Msa0181020:CDS 50.0%
TTAGCTGTGACAAAGGCCAG+AGG + chr1_4:69116490-69116509 Msa0181020:CDS 50.0%
TGTGACAAAGGCCAGAGGAA+TGG + chr1_4:69116495-69116514 Msa0181020:CDS 50.0%
TCCAGCAACTTCCATTCCTC+TGG - chr1_4:69116509-69116528 None:intergenic 50.0%
CTTCCATGCCACAAAGCTAC+AGG - chr1_4:69116799-69116818 None:intergenic 50.0%
TTTGTAGTCCAAGGCCACAG+CGG + chr1_4:69116975-69116994 Msa0181020:intron 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG + chr1_4:69117455-69117474 Msa0181020:CDS 50.0%
GTTGCTCCAACGCTTTCCAT+AGG + chr1_4:69117677-69117696 Msa0181020:CDS 50.0%
TCCCAAACGAAGACGGAGAA+AGG + chr1_4:69117935-69117954 Msa0181020:intron 50.0%
GACCTTTCTCCGTCTTCGTT+TGG - chr1_4:69117940-69117959 None:intergenic 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG - chr1_4:69118015-69118034 None:intergenic 50.0%
AAAGGCAAGGGGTCAAGCTT+TGG + chr1_4:69118198-69118217 Msa0181020:intron 50.0%
AAGGCAAGGGGTCAAGCTTT+GGG + chr1_4:69118199-69118218 Msa0181020:intron 50.0%
TGGAATTCGCGTGCACAGTT+TGG + chr1_4:69118225-69118244 Msa0181020:CDS 50.0%
AGCATTCTGAACGTGACTCG+AGG + chr1_4:69118894-69118913 Msa0181020:three_prime_UTR 50.0%
GCCAGAGGAATGGAAGTTGC+TGG + chr1_4:69116505-69116524 Msa0181020:CDS 55.0%
GAAATCGACTACGACCGCTG+TGG - chr1_4:69116992-69117011 None:intergenic 55.0%
GTCATACACTGCGGAAGGGT+CGG - chr1_4:69117016-69117035 None:intergenic 55.0%
AAGGCCAGCATGGTGAGCAA+GGG + chr1_4:69117465-69117484 Msa0181020:intron 55.0%
!! AGGGGTCAAGCTTTGGGAGA+TGG + chr1_4:69118205-69118224 Msa0181020:CDS 55.0%
GTTGTACTAGAGGGAAGCCC+TGG - chr1_4:69118256-69118275 None:intergenic 55.0%
! GTCTTGGAGAGGCATGTCCT+TGG + chr1_4:69118290-69118309 Msa0181020:intron 55.0%
GAAGGCCAGCATGGTGAGCA+AGG + chr1_4:69117464-69117483 Msa0181020:intron 60.0%
AGGCCAGCATGGTGAGCAAG+GGG + chr1_4:69117466-69117485 Msa0181020:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG - chr1_4:69117472-69117491 None:intergenic 60.0%
GACTACGACCGCTGTGGCCT+TGG - chr1_4:69116986-69117005 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69116157 69119145 69116157 ID=Msa0181020;Name=Msa0181020
chr1_4 mRNA 69116157 69119145 69116157 ID=Msa0181020-mRNA-1;Parent=Msa0181020;Name=Msa0181020-mRNA-1;_AED=0.14;_eAED=0.14;_QI=81|0.88|0.9|1|1|1|10|378|299
chr1_4 exon 69116157 69116357 69116157 ID=Msa0181020-mRNA-1:exon:22944;Parent=Msa0181020-mRNA-1
chr1_4 exon 69116445 69116567 69116445 ID=Msa0181020-mRNA-1:exon:22945;Parent=Msa0181020-mRNA-1
chr1_4 exon 69116803 69116877 69116803 ID=Msa0181020-mRNA-1:exon:22946;Parent=Msa0181020-mRNA-1
chr1_4 exon 69116982 69117038 69116982 ID=Msa0181020-mRNA-1:exon:22947;Parent=Msa0181020-mRNA-1
chr1_4 exon 69117381 69117476 69117381 ID=Msa0181020-mRNA-1:exon:22948;Parent=Msa0181020-mRNA-1
chr1_4 exon 69117668 69117784 69117668 ID=Msa0181020-mRNA-1:exon:22949;Parent=Msa0181020-mRNA-1
chr1_4 exon 69118006 69118098 69118006 ID=Msa0181020-mRNA-1:exon:22950;Parent=Msa0181020-mRNA-1
chr1_4 exon 69118202 69118300 69118202 ID=Msa0181020-mRNA-1:exon:22951;Parent=Msa0181020-mRNA-1
chr1_4 exon 69118553 69118639 69118553 ID=Msa0181020-mRNA-1:exon:22952;Parent=Msa0181020-mRNA-1
chr1_4 exon 69118735 69119145 69118735 ID=Msa0181020-mRNA-1:exon:22953;Parent=Msa0181020-mRNA-1
chr1_4 five_prime_UTR 69116157 69116237 69116157 ID=Msa0181020-mRNA-1:five_prime_utr;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69116238 69116357 69116238 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69116445 69116567 69116445 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69116803 69116877 69116803 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69116982 69117038 69116982 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69117381 69117476 69117381 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69117668 69117784 69117668 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69118006 69118098 69118006 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69118202 69118300 69118202 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69118553 69118639 69118553 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 CDS 69118735 69118767 69118735 ID=Msa0181020-mRNA-1:cds;Parent=Msa0181020-mRNA-1
chr1_4 three_prime_UTR 69118768 69119145 69118768 ID=Msa0181020-mRNA-1:three_prime_utr;Parent=Msa0181020-mRNA-1
Gene Sequence

>Msa0181020

ATGGCTGCCTTAAGCTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAATCATTCTATAATTTCCTGCACAGCACAACCTATACAAAGCAATATAAAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGCTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGTTCTATATCTCAGTCCAAGGCCACAGCGGTCGTAGTCGATTTCACCGACCCTTCCGCAGTGTATGACAATGCAACAGCATTTGGCATGAAAAGTGTTGTGTACGTGCCACGAATCAAATTAGATACGGTTGCAGCATTATCTGCATTCTGTGAGAAGGCCAGCATGGGTGTCTTGGTTGCTCCAACGCTTTCCATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGCAAGGGGTCAAGCTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGATTTACACCATCAAGCATGATATCACAGATGTACAATGTCTTATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAACTTGGTATACGGCTTGGAGAAGTTTTTGTGA

Protein sequence

>Msa0181020

MAALSCQFHSINYLNSQMVKSRSNHSIISCTAQPIQSNIKVVINGAAKEVGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQALGDGIRVHSLVLPGLPSSTTVHFSGLGEIYTIKHDITDVQCLMPGLLLAIRKVVRLKNLVYGLEKFL*