AlfalfaGEDB | Msa1382780

M. sativa cultivar zhongmu-4 / Msa1382780

KEGG: -
GO: GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141
PFAM: PF02229.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382780	XP_003602657.1	94.048	84	5	0	1	84	1	84	7.49e-50	163

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382780	sp\|O65154\|KIWI_ARATH	59.036	83	32	2	4	84	2	84	2.37e-26	96.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382780	G7JC59	94.048	84	5	0	1	84	1	84	3.58e-50	163

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1382780	0.857581	1.481044e-62	-8.615850e-47
Msa0003720	Msa1382780	0.803897	2.800128e-49	-8.615850e-47
Msa0008090	Msa1382780	0.807333	5.319678e-50	-8.615850e-47
Msa0008410	Msa1382780	0.845728	3.388943e-59	-8.615850e-47
Msa0027260	Msa1382780	0.829529	4.892773e-55	-8.615850e-47
Msa0029260	Msa1382780	0.812798	3.536328e-51	-8.615850e-47
Msa0029630	Msa1382780	0.864567	1.108267e-64	-8.615850e-47
Msa0032260	Msa1382780	0.829532	4.883766e-55	-8.615850e-47
Msa0033880	Msa1382780	0.810821	9.527269e-51	-8.615850e-47
Msa0046740	Msa1382780	0.819064	1.413127e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382780	MtrunA17_Chr3g0130571	94.048	84	5	0	1	84	35	118	1.72e-53	163
Msa1382780	MtrunA17_Chr8g0388461	55.102	49	21	1	37	84	95	143	5.02e-12	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382780	AT5G09250.4	59.036	83	32	2	4	84	2	84	1.70e-27	97.4
Msa1382780	AT5G09250.1	59.036	83	32	2	4	84	2	84	2.41e-27	96.7
Msa1382780	AT5G09250.2	59.524	84	31	3	4	85	2	84	2.37e-26	93.6
Msa1382780	AT5G09250.5	59.524	84	31	3	4	85	2	84	2.37e-26	93.6
Msa1382780	AT5G09250.3	67.442	43	14	0	42	84	45	87	1.40e-17	72.0
Msa1382780	AT5G09240.2	40.367	109	52	5	4	101	2	108	2.59e-15	67.0
Msa1382780	AT5G09240.3	43.678	87	42	4	7	88	5	89	3.46e-15	66.2
Msa1382780	AT5G09240.1	45.783	83	38	4	7	84	5	85	2.54e-14	63.5

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Find 62 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCTGGAACTGGAAA+GGG	0.461735	tig0020524:-57804	Msa1382780:CDS
AAAGACACCGAAGATGACTC+TGG	0.589702	tig0020524:-57705	Msa1382780:CDS
AAAGATGGCAAGCAGTTGCC+TGG	0.493882	tig0020524:-57480	Msa1382780:CDS
AAAGATTTCATAAACAACGA+AGG	0.622084	tig0020524:+57400	None:intergenic
AAATCACCAATTGAATTCAC+TGG	0.519587	tig0020524:+56977	None:intergenic
AAATGTCTGGAACTGGAAAG+GGG	0.652792	tig0020524:-57803	Msa1382780:CDS
AAATTTCCATAAAATTGAAT+TGG	0.339697	tig0020524:+56598	None:intergenic
AACATGTTAGAGTATGTTGA+AGG	0.529882	tig0020524:+57211	None:intergenic
AACTGGAAAGGGGAAGAAGA+GGG	0.582966	tig0020524:-57793	Msa1382780:CDS
AAGAGCCAGTGAGTGTGAGT+CGG	0.605034	tig0020524:+57989	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTAGTGGAATTGAATACA+CGG	+	tig0020524:56684-56703	None:intergenic	30.0%
GAAATGATGAATAGGATCAT+AGG	-	tig0020524:57282-57301	Msa1382780:three_prime_UTR	30.0%
AACATGTTAGAGTATGTTGA+AGG	+	tig0020524:57363-57382	None:intergenic	30.0%
ATGTTATCGATCTCAGATAA+TGG	+	tig0020524:57502-57521	None:intergenic	30.0%
AAATCACCAATTGAATTCAC+TGG	+	tig0020524:57597-57616	None:intergenic	30.0%
TTGCTGATAATTAAGTTCAC+AGG	+	tig0020524:57652-57671	None:intergenic	30.0%
GCAGTTTGTGAGAAAAATAT+AGG	-	tig0020524:57781-57800	Msa1382780:CDS	30.0%
GTTGAAAATACTGTAGTTGT+TGG	-	tig0020524:57892-57911	Msa1382780:intron	30.0%
TTAATCAAGTGAATGGACAT+TGG	-	tig0020524:57916-57935	Msa1382780:intron	30.0%
TGTTAGTGGAATTGAATACA+CGG	+	tig0020524:56684-56703	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020524	gene	56572	58021	56572	ID=Msa1382780;Name=Msa1382780
tig0020524	mRNA	56572	58021	56572	ID=Msa1382780-mRNA-1;Parent=Msa1382780;Name=Msa1382780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=109\|1\|1\|1\|0.5\|0.33\|3\|835\|101
tig0020524	exon	56572	57577	56572	ID=Msa1382780-mRNA-1:exon:8329;Parent=Msa1382780-mRNA-1
tig0020524	exon	57689	57869	57689	ID=Msa1382780-mRNA-1:exon:8328;Parent=Msa1382780-mRNA-1
tig0020524	exon	57959	58021	57959	ID=Msa1382780-mRNA-1:exon:8327;Parent=Msa1382780-mRNA-1
tig0020524	five_prime_UTR	57959	58021	57959	ID=Msa1382780-mRNA-1:five_prime_utr;Parent=Msa1382780-mRNA-1
tig0020524	five_prime_UTR	57824	57869	57824	ID=Msa1382780-mRNA-1:five_prime_utr;Parent=Msa1382780-mRNA-1
tig0020524	CDS	57689	57823	57689	ID=Msa1382780-mRNA-1:cds;Parent=Msa1382780-mRNA-1
tig0020524	CDS	57407	57577	57407	ID=Msa1382780-mRNA-1:cds;Parent=Msa1382780-mRNA-1
tig0020524	three_prime_UTR	56572	57406	56572	ID=Msa1382780-mRNA-1:three_prime_utr;Parent=Msa1382780-mRNA-1

Gene Sequence	>Msa1382780 ATGTCTGGAACTGGAAAGGGGAAGAAGAGGGAAGAACTCGACCACGCTTCCGACGACGACACTGAATCTCACGCGCCTCCCAAAAAAACCGTCAAGAAAGACACCGAAGATGACTCTGGTGACATCGTCTTTGAGATTGGGAAGAACAGGAGGGTTTCCGTCAGGACCTGGAATAAACAGCTTTGGGTCGACATTCGCGAATTTTATACCAAAGATGGCAAGCAGTTGCCTGGCAAAAAAGGTATCGGATTCATTTCCTCATTTTGTCATGAATCTGTGAAGATGGTTCGCCTTCGTTGTTTATGA
Protein sequence	>Msa1382780 MSGTGKGKKREELDHASDDDTESHAPPKKTVKKDTEDDSGDIVFEIGKNRRVSVRTWNKQLWVDIREFYTKDGKQLPGKKGIGFISSFCHESVKMVRLRCL*