AlfalfaGEDB | Msa0398630

M. sativa cultivar zhongmu-4 / Msa0398630

KEGG: K02111|K02132
GO: -
PFAM: PF00006.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398630	YP_010173506.1	68.539	89	21	2	1	82	1	89	3.50e-22	107
Msa0398630	YP_010173506.1	99.583	240	1	0	51	290	175	414	9.85e-168	485

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398630	sp\|Q3C1H4\|ATPA_NICSY	97.917	240	5	0	51	290	175	414	3.47e-168	479
Msa0398630	sp\|Q3C1H4\|ATPA_NICSY	67.416	89	22	3	1	82	1	89	5.41e-23	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398630	A0A898N9I9	68.539	89	21	2	1	82	1	89	1.67e-22	107
Msa0398630	A0A898N9I9	99.583	240	1	0	51	290	175	414	4.70e-168	485

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001040	Msa0398630	0.808319	3.283769e-50	-8.615850e-47
Msa0002690	Msa0398630	0.813907	2.018475e-51	-8.615850e-47
Msa0002700	Msa0398630	0.817739	2.820861e-52	-8.615850e-47
Msa0003370	Msa0398630	0.810826	9.502599e-51	-8.615850e-47
Msa0016830	Msa0398630	0.820206	7.754643e-53	-8.615850e-47
Msa0018010	Msa0398630	0.804084	2.560361e-49	-8.615850e-47
Msa0021570	Msa0398630	0.816739	4.735489e-52	-8.615850e-47
Msa0028410	Msa0398630	0.822645	2.120250e-53	-8.615850e-47
Msa0028450	Msa0398630	0.832588	8.679192e-56	-8.615850e-47
Msa0028940	Msa0398630	0.803494	3.394734e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398630	MtrunA17_Chr4g0015651	99.583	240	1	0	51	290	175	414	1.97e-171	484
Msa0398630	MtrunA17_Chr4g0015651	67.416	89	22	2	1	82	1	89	1.26e-25	106
Msa0398630	MtrunA17_Chr4g0016741	99.583	240	1	0	51	290	175	414	1.97e-171	484
Msa0398630	MtrunA17_Chr4g0016741	67.416	89	22	2	1	82	1	89	1.26e-25	106
Msa0398630	MtrunA17_CPg0492941	99.583	240	1	0	51	290	175	414	1.97e-171	484
Msa0398630	MtrunA17_CPg0492941	67.416	89	22	2	1	82	1	89	1.26e-25	106
Msa0398630	MtrunA17_Chr2g0278821	90.722	194	18	0	97	290	2	195	3.22e-127	364
Msa0398630	MtrunA17_MTg0490471	70.683	249	64	1	51	290	176	424	9.09e-118	348
Msa0398630	MtrunA17_Chr2g0286451	88.372	86	10	0	52	137	104	189	1.12e-45	153
Msa0398630	MtrunA17_Chr4g0040631	66.292	89	23	2	1	82	1	89	1.10e-26	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398630	ATCG00120.1	96.667	240	8	0	51	290	175	414	1.76e-166	472
Msa0398630	ATCG00120.1	67.416	89	22	3	1	82	1	89	1.03e-23	100
Msa0398630	ATMG01190.1	67.704	257	72	2	51	296	176	432	7.66e-116	343
Msa0398630	AT2G07698.1	67.704	257	72	2	51	296	446	702	1.20e-112	343
Msa0398630	AT4G38510.5	31.088	193	129	3	57	247	199	389	3.22e-21	93.6
Msa0398630	AT4G38510.1	30.500	200	135	3	57	254	192	389	3.73e-21	93.6
Msa0398630	AT4G38510.3	30.500	200	135	3	57	254	192	389	3.73e-21	93.6
Msa0398630	AT4G38510.4	30.500	200	135	3	57	254	192	389	3.73e-21	93.6
Msa0398630	AT4G38510.2	30.500	200	135	3	57	254	192	389	3.73e-21	93.6
Msa0398630	AT1G76030.1	30.457	197	133	3	60	254	194	388	2.48e-20	91.3

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Find 62 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATGAAACAGGTAGC+TGG	0.558354	3_2:+20516612	Msa0398630:CDS
AAATATTTGGCCATCTGTAA+TGG	0.434228	3_2:-20516502	None:intergenic
AACTACTTTACAAGAAAGAG+GGG	0.635218	3_2:+20516122	Msa0398630:CDS
AAGCTGAAACATCTCCTGAT+TGG	0.409535	3_2:-20516458	None:intergenic
AATCAGACCAGCTATTAATG+TGG	0.625394	3_2:+20516551	Msa0398630:CDS
AATGGAGTACACTATTATAG+TGG	0.544433	3_2:+20516146	Msa0398630:CDS
AATGTAATTTCCATTACAGA+TGG	0.557336	3_2:+20516492	Msa0398630:CDS
ACAGAGGTCTTCTAAACCTT+TGG	0.398491	3_2:-20517272	None:intergenic
ACAGGTACTGTACTTCAAGT+AGG	0.592569	3_2:+20512298	Msa0398630:CDS
ACGCAAAATCAATTGGCAAG+AGG	0.645378	3_2:+20516711	Msa0398630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATTGCTCAATACGTTCA+CGG	-	chr3_2:20512255-20512274	None:intergenic	30.0%
TGAATTAGTCGAATTTGAAG+AGG	+	chr3_2:20512366-20512385	Msa0398630:intron	30.0%
GAATTAGTCGAATTTGAAGA+GGG	+	chr3_2:20512367-20512386	Msa0398630:intron	30.0%
ATGATTTCAGCATTAGTATC+AGG	-	chr3_2:20513102-20513121	None:intergenic	30.0%
ACGTCTTTATTATCAGTTTC+AGG	-	chr3_2:20513527-20513546	None:intergenic	30.0%
ATTCTGATACTAACCTATTC+AGG	+	chr3_2:20513574-20513593	Msa0398630:intron	30.0%
GAAGTAAAGAATCCTAGTTA+TGG	-	chr3_2:20513694-20513713	None:intergenic	30.0%
GATTCTTTACTTCCAATGAT+TGG	+	chr3_2:20513701-20513720	Msa0398630:intron	30.0%
CATGTCATGTAAACAATTCA+TGG	-	chr3_2:20513735-20513754	None:intergenic	30.0%
GTTTATGTTACTATGCATGT+TGG	+	chr3_2:20513878-20513897	Msa0398630:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	20512214	20517283	20512214	ID=Msa0398630;Name=Msa0398630
chr3_2	mRNA	20512214	20517283	20512214	ID=Msa0398630-mRNA-1;Parent=Msa0398630;Name=Msa0398630-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|0.66\|0.5\|0.33\|3\|0\|297
chr3_2	exon	20512214	20512364	20512214	ID=Msa0398630-mRNA-1:exon:4455;Parent=Msa0398630-mRNA-1
chr3_2	exon	20516016	20516732	20516016	ID=Msa0398630-mRNA-1:exon:4456;Parent=Msa0398630-mRNA-1
chr3_2	exon	20517258	20517283	20517258	ID=Msa0398630-mRNA-1:exon:4457;Parent=Msa0398630-mRNA-1
chr3_2	CDS	20512214	20512364	20512214	ID=Msa0398630-mRNA-1:cds;Parent=Msa0398630-mRNA-1
chr3_2	CDS	20516016	20516732	20516016	ID=Msa0398630-mRNA-1:cds;Parent=Msa0398630-mRNA-1
chr3_2	CDS	20517258	20517283	20517258	ID=Msa0398630-mRNA-1:cds;Parent=Msa0398630-mRNA-1

Gene Sequence

>Msa0398630

ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTCTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGATTTGAACCTATACCAAAGGTTTAG

Protein sequence

>Msa0398630

MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYSMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGFEPIPKV*