AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398630 MtrunA17_Chr4g0015651 99.583 240 1 0 51 290 175 414 1.97e-171 484
Msa0398630 MtrunA17_Chr4g0015651 67.416 89 22 2 1 82 1 89 1.26e-25 106
Msa0398630 MtrunA17_Chr4g0016741 99.583 240 1 0 51 290 175 414 1.97e-171 484
Msa0398630 MtrunA17_Chr4g0016741 67.416 89 22 2 1 82 1 89 1.26e-25 106
Msa0398630 MtrunA17_CPg0492941 99.583 240 1 0 51 290 175 414 1.97e-171 484
Msa0398630 MtrunA17_CPg0492941 67.416 89 22 2 1 82 1 89 1.26e-25 106
Msa0398630 MtrunA17_Chr2g0278821 90.722 194 18 0 97 290 2 195 3.22e-127 364
Msa0398630 MtrunA17_MTg0490471 70.683 249 64 1 51 290 176 424 9.09e-118 348
Msa0398630 MtrunA17_Chr2g0286451 88.372 86 10 0 52 137 104 189 1.12e-45 153
Msa0398630 MtrunA17_Chr4g0040631 66.292 89 23 2 1 82 1 89 1.10e-26 102
Msa0398630 MtrunA17_Chr1g0211291 30.348 201 135 3 57 254 193 391 1.03e-20 92.0
Msa0398630 MtrunA17_Chr7g0250051 30.208 192 131 2 64 254 200 389 4.12e-20 90.1
Msa0398630 MtrunA17_Chr5g0413061 51.765 85 27 2 71 154 13 84 6.20e-18 77.0
Msa0398630 MtrunA17_Chr4g0000341 28.571 217 130 7 50 248 257 466 2.18e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398630 ATCG00120.1 96.667 240 8 0 51 290 175 414 1.76e-166 472
Msa0398630 ATCG00120.1 67.416 89 22 3 1 82 1 89 1.03e-23 100
Msa0398630 ATMG01190.1 67.704 257 72 2 51 296 176 432 7.66e-116 343
Msa0398630 AT2G07698.1 67.704 257 72 2 51 296 446 702 1.20e-112 343
Msa0398630 AT4G38510.5 31.088 193 129 3 57 247 199 389 3.22e-21 93.6
Msa0398630 AT4G38510.1 30.500 200 135 3 57 254 192 389 3.73e-21 93.6
Msa0398630 AT4G38510.3 30.500 200 135 3 57 254 192 389 3.73e-21 93.6
Msa0398630 AT4G38510.4 30.500 200 135 3 57 254 192 389 3.73e-21 93.6
Msa0398630 AT4G38510.2 30.500 200 135 3 57 254 192 389 3.73e-21 93.6
Msa0398630 AT1G76030.1 30.457 197 133 3 60 254 194 388 2.48e-20 91.3
Msa0398630 AT1G20260.1 31.319 182 122 2 67 247 203 382 5.42e-20 90.1
Msa0398630 AT1G78900.1 28.571 217 130 7 50 248 256 465 3.42e-12 67.0
Msa0398630 AT1G78900.2 28.571 217 130 7 50 248 256 465 3.42e-12 67.0

Find 62 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGGCATTGCTCGTATTTA+TGG 0.205588 3_2:+20512322 Msa0398630:CDS
TTATTTACATTCTCGTCTTT+TGG 0.245014 3_2:+20516368 Msa0398630:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 3_2:+20516626 Msa0398630:CDS
GCCAGAGCTGCACCTGTATA+AGG 0.317929 3_2:-20516210 None:intergenic
TTTACCAGCTACCTGTTTCA+TGG 0.322039 3_2:-20516616 None:intergenic
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 3_2:-20516286 None:intergenic
CCTGATTGGGTCTCAACTAT+TGG 0.368964 3_2:-20516444 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 3_2:+20516632 Msa0398630:CDS
GTCTTCTAAACCTTTGGTAT+AGG 0.387866 3_2:-20517266 None:intergenic
TCCTTATACAGGTGCAGCTC+TGG 0.392160 3_2:+20516209 Msa0398630:CDS
CCAATAGTTGAGACCCAATC+AGG 0.395916 3_2:+20516444 Msa0398630:CDS
ACAGAGGTCTTCTAAACCTT+TGG 0.398491 3_2:-20517272 None:intergenic
AGATACAATTCTCAATCAAC+AGG 0.401486 3_2:+20516035 Msa0398630:CDS
TCAAATTAAAGCCATGAAAC+AGG 0.408465 3_2:+20516605 Msa0398630:CDS
CCGGGATACGCTTCGCGACC+TGG 0.409309 3_2:-20516336 None:intergenic
AAGCTGAAACATCTCCTGAT+TGG 0.409535 3_2:-20516458 None:intergenic
GCTAAATTAAGTTCTCAGTT+AGG 0.415873 3_2:+20516399 Msa0398630:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 3_2:-20516502 None:intergenic
GGTATTTCCGTTTCCAGAGT+TGG 0.443512 3_2:+20516573 Msa0398630:CDS
GTAATGGAAATTACATTAGT+AGG 0.444650 3_2:-20516486 None:intergenic
ATATGTGTTTATGTAGCTAT+TGG 0.445393 3_2:+20516069 Msa0398630:CDS
TAAAGCTACGCAAAATCAAT+TGG 0.449089 3_2:+20516704 Msa0398630:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 3_2:-20516308 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 3_2:-20516457 None:intergenic
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 3_2:-20516283 None:intergenic
CAATACCTCGCTCCTTATAC+AGG 0.462710 3_2:+20516198 Msa0398630:CDS
CCAGGTCGCGAAGCGTATCC+CGG 0.478786 3_2:+20516336 Msa0398630:CDS
TAACTGAGAACTTAATTTAG+CGG 0.485288 3_2:-20516397 None:intergenic
CGCCGATCCAACTCTGGAAA+CGG 0.485937 3_2:-20516580 None:intergenic
TATATTGCTCAATACGTTCA+CGG 0.487151 3_2:-20512252 None:intergenic
GCGAGGTATTGTAATGTAGC+TGG 0.497569 3_2:-20516186 None:intergenic
TTCCGTTTCCAGAGTTGGAT+CGG 0.499691 3_2:+20516578 Msa0398630:CDS
ACTAATTTCATCTGCACGAA+TGG 0.507471 3_2:-20512221 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 3_2:+20516528 Msa0398630:CDS
GTAACTACTTTACAAGAAAG+AGG 0.516144 3_2:+20516120 Msa0398630:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 3_2:-20516248 None:intergenic
TTGAGCCGCCGATCCAACTC+TGG 0.524235 3_2:-20516586 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 3_2:-20516282 None:intergenic
GAAATACCCACATTAATAGC+TGG 0.538501 3_2:-20516558 None:intergenic
TTATGGTCTTGATGAAGTAA+TGG 0.538951 3_2:+20512339 Msa0398630:CDS
TTTACAAGAAAGAGGGGCAA+TGG 0.541624 3_2:+20516128 Msa0398630:CDS
AATGGAGTACACTATTATAG+TGG 0.544433 3_2:+20516146 Msa0398630:CDS
AGCATCTTCTGTGGCTCAAG+TGG 0.546125 3_2:+20516098 Msa0398630:CDS
AATGTAATTTCCATTACAGA+TGG 0.557336 3_2:+20516492 Msa0398630:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 3_2:+20516612 Msa0398630:CDS
TTAAGTTCTCAGTTAGGTGA+AGG 0.563580 3_2:+20516405 Msa0398630:CDS
CGATCCCTCCAAACAAGCAC+AGG 0.574680 3_2:+20516278 Msa0398630:CDS
AGGATTTGAACCTATACCAA+AGG 0.575224 3_2:+20517256 Msa0398630:intron
TAACTACTTTACAAGAAAGA+GGG 0.578222 3_2:+20516121 Msa0398630:CDS
ACAGGTACTGTACTTCAAGT+AGG 0.592569 3_2:+20512298 Msa0398630:CDS
CTTCTATTACGAAGACCACC+AGG 0.597315 3_2:+20516318 Msa0398630:CDS
ATCAGACCAGCTATTAATGT+GGG 0.604091 3_2:+20516552 Msa0398630:CDS
AATCAGACCAGCTATTAATG+TGG 0.625394 3_2:+20516551 Msa0398630:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 3_2:-20516532 None:intergenic
AACTACTTTACAAGAAAGAG+GGG 0.635218 3_2:+20516122 Msa0398630:CDS
GGTCTTGATGAAGTAATGGC+AGG 0.640111 3_2:+20512343 Msa0398630:CDS
ACGCAAAATCAATTGGCAAG+AGG 0.645378 3_2:+20516711 Msa0398630:CDS
CGTTTCCAGAGTTGGATCGG+CGG 0.663289 3_2:+20516581 Msa0398630:CDS
CTGCACCTGTATAAGGAGCG+AGG 0.679934 3_2:-20516203 None:intergenic
ACTGTACTTCAAGTAGGCGA+CGG 0.682410 3_2:+20512304 Msa0398630:CDS
GGATACGCTTCGCGACCTGG+TGG 0.699302 3_2:-20516333 None:intergenic
GATACAATTCTCAATCAACA+GGG 0.744742 3_2:+20516036 Msa0398630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAATTTTAGAATAAAGA+CGG - chr3_2:20513557-20513576 None:intergenic 10.0%
!!! AAATTTTAGAACAAAATAAT+GGG + chr3_2:20514287-20514306 Msa0398630:intron 10.0%
!! AAATTATCATAAATGATTAT+TGG - chr3_2:20515094-20515113 None:intergenic 10.0%
!! ACTAATTATGAATATAATAA+AGG - chr3_2:20517054-20517073 None:intergenic 10.0%
!! TACGAATATAATTAATATAT+AGG + chr3_2:20517192-20517211 Msa0398630:intron 10.0%
!!! TGTATTTACAATTTTTACTT+CGG - chr3_2:20512281-20512300 None:intergenic 15.0%
!! AAATATATATATATCACTAC+AGG + chr3_2:20512748-20512767 Msa0398630:intron 15.0%
!!! TGATCTGAAATAAAATAAAA+GGG + chr3_2:20512896-20512915 Msa0398630:intron 15.0%
!!! AATTTAGTTTATCAGAATAT+GGG - chr3_2:20513651-20513670 None:intergenic 15.0%
!! TAAATGATTGAGAAAAATAT+TGG - chr3_2:20514056-20514075 None:intergenic 15.0%
!! AGATTGATATACATATAATT+TGG - chr3_2:20514208-20514227 None:intergenic 15.0%
!!! GAAATTTTAGAACAAAATAA+TGG + chr3_2:20514286-20514305 Msa0398630:intron 15.0%
!! NNNNNNCGAGAATTAATTAT+TGG + chr3_2:20515979-20515998 Msa0398630:intron 15.0%
!! NNNNNCGAGAATTAATTATT+GGG + chr3_2:20515980-20515999 Msa0398630:intron 15.0%
!! GAAGTAAAAATTGTAAATAC+AGG + chr3_2:20512280-20512299 Msa0398630:CDS 20.0%
!! ATTCTAGATAAGTTTAGTAT+GGG - chr3_2:20512660-20512679 None:intergenic 20.0%
!! TATTCTAGATAAGTTTAGTA+TGG - chr3_2:20512661-20512680 None:intergenic 20.0%
!! CTAGTTCAGATTATTTATTA+TGG - chr3_2:20512808-20512827 None:intergenic 20.0%
!!! CTGATCTGAAATAAAATAAA+AGG + chr3_2:20512895-20512914 Msa0398630:intron 20.0%
!! TGAAATAAAATAAAAGGGAT+TGG + chr3_2:20512901-20512920 Msa0398630:intron 20.0%
!! GAAATAAAATAAAAGGGATT+GGG + chr3_2:20512902-20512921 Msa0398630:intron 20.0%
!! AAATAAAATAAAAGGGATTG+GGG + chr3_2:20512903-20512922 Msa0398630:intron 20.0%
!!! TATTATCTGAGTTGATTTTA+CGG + chr3_2:20513185-20513204 Msa0398630:intron 20.0%
!! ATTAAAATATGTTTAAACCG+TGG - chr3_2:20513394-20513413 None:intergenic 20.0%
!!! ATTTAGTTTATCAGAATATG+GGG - chr3_2:20513650-20513669 None:intergenic 20.0%
!!! GAATTTAGTTTATCAGAATA+TGG - chr3_2:20513652-20513671 None:intergenic 20.0%
!! AATGTGCAATAATTATGTAA+TGG + chr3_2:20513781-20513800 Msa0398630:intron 20.0%
!!! TTTTATTCAATTATGTAACC+AGG - chr3_2:20513920-20513939 None:intergenic 20.0%
!! TACATAAGTAAATTCATCAT+TGG + chr3_2:20514074-20514093 Msa0398630:intron 20.0%
!!! CTATTTTGGAAAATTGATTA+TGG - chr3_2:20514498-20514517 None:intergenic 20.0%
!!! AAATAGTAATTAAGCTGTTT+TGG - chr3_2:20514665-20514684 None:intergenic 20.0%
!!! AATTTAAGCTATTTTCCAAA+CGG + chr3_2:20514802-20514821 Msa0398630:intron 20.0%
!!! AAATAATCTGTTATTGCTTT+TGG - chr3_2:20515233-20515252 None:intergenic 20.0%
!!! TGTTGATTTTAGCTTAAATT+TGG + chr3_2:20515436-20515455 Msa0398630:intron 20.0%
!!! TTTATCGAATATTTTAGTTG+AGG - chr3_2:20515644-20515663 None:intergenic 20.0%
!!! TTATCTTAGGGTTTTTTTTA+GGG - chr3_2:20515768-20515787 None:intergenic 20.0%
!!! TTTATCTTAGGGTTTTTTTT+AGG - chr3_2:20515769-20515788 None:intergenic 20.0%
!! AGTATCAGTTATTTATCTTA+GGG - chr3_2:20515780-20515799 None:intergenic 20.0%
!! NNNNCGAGAATTAATTATTG+GGG + chr3_2:20515981-20516000 Msa0398630:intron 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr3_2:20516358-20516377 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr3_2:20516632-20516651 Msa0398630:CDS 20.0%
!! CAGATAATAACTATTTATAC+TGG + chr3_2:20516792-20516811 Msa0398630:intron 20.0%
!! GATATGATTTCGTTAAATTT+AGG - chr3_2:20516903-20516922 None:intergenic 20.0%
!! AATTTGGAATCCAAAAATGT+TGG + chr3_2:20512408-20512427 Msa0398630:intron 25.0%
!! TAATACAACACCAACATTTT+TGG - chr3_2:20512421-20512440 None:intergenic 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG + chr3_2:20512422-20512441 Msa0398630:intron 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG + chr3_2:20512423-20512442 Msa0398630:intron 25.0%
!!! TTATTTTATTTCAGATCAGC+AGG - chr3_2:20512894-20512913 None:intergenic 25.0%
! AAACTGTATAAACCCAAAAA+GGG - chr3_2:20513017-20513036 None:intergenic 25.0%
! AAAACTGTATAAACCCAAAA+AGG - chr3_2:20513018-20513037 None:intergenic 25.0%
! AATGTCTGTCATATTATGTT+AGG + chr3_2:20513140-20513159 Msa0398630:intron 25.0%
!! TTTAGTTTATCAGAATATGG+GGG - chr3_2:20513649-20513668 None:intergenic 25.0%
! ATGTCATGTAAACAATTCAT+GGG - chr3_2:20513734-20513753 None:intergenic 25.0%
!!! GTTTATGATAGTGTTGATAT+TGG - chr3_2:20514120-20514139 None:intergenic 25.0%
!! AATTGAATTGTCACATGTTT+TGG - chr3_2:20514183-20514202 None:intergenic 25.0%
! TAAGAATTATTAGAACGTGT+TGG - chr3_2:20514336-20514355 None:intergenic 25.0%
! TGATATAATTTACTACCCAA+AGG + chr3_2:20514376-20514395 Msa0398630:intron 25.0%
!! GAAAATTGATTATGGAGTTT+TGG - chr3_2:20514490-20514509 None:intergenic 25.0%
!! ATGGTAATTTTTCTATATGC+TGG - chr3_2:20514596-20514615 None:intergenic 25.0%
! TTTAACTGGTATATGAGTAA+TGG - chr3_2:20514726-20514745 None:intergenic 25.0%
! TTATGAGAGATATGTTTAAC+TGG - chr3_2:20514740-20514759 None:intergenic 25.0%
! TAAACATATCTCTCATAAAC+TGG + chr3_2:20514742-20514761 Msa0398630:intron 25.0%
! GTTTGGAAAATAGCTTAAAT+TGG - chr3_2:20514803-20514822 None:intergenic 25.0%
!! CATAAGTTGAATTGTTTAGA+GGG - chr3_2:20514993-20515012 None:intergenic 25.0%
!! ACATAAGTTGAATTGTTTAG+AGG - chr3_2:20514994-20515013 None:intergenic 25.0%
! AACAACTTATACCTCAATTT+AGG + chr3_2:20515121-20515140 Msa0398630:intron 25.0%
!!! AAAGCTTTAGCTTATGATTT+TGG - chr3_2:20515287-20515306 None:intergenic 25.0%
! TATTTCGCTTAAAACTTTCA+CGG - chr3_2:20515670-20515689 None:intergenic 25.0%
! TCCATTGGAATAATTTGATT+CGG + chr3_2:20515705-20515724 Msa0398630:intron 25.0%
! CAGTATCAGTTATTTATCTT+AGG - chr3_2:20515781-20515800 None:intergenic 25.0%
!! TGATACTGAATTTTTACATG+CGG + chr3_2:20515793-20515812 Msa0398630:intron 25.0%
! ATATGTGTTTATGTAGCTAT+TGG + chr3_2:20516069-20516088 Msa0398630:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + chr3_2:20516121-20516140 Msa0398630:CDS 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr3_2:20516357-20516376 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr3_2:20516368-20516387 Msa0398630:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr3_2:20516400-20516419 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr3_2:20516489-20516508 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr3_2:20516492-20516511 Msa0398630:CDS 25.0%
! TGATTCATTAGAAATTGATC+AGG + chr3_2:20516830-20516849 Msa0398630:intron 25.0%
! TAAATTTCTCGTTGAGTTAA+GGG + chr3_2:20516857-20516876 Msa0398630:intron 25.0%
TATATTGCTCAATACGTTCA+CGG - chr3_2:20512255-20512274 None:intergenic 30.0%
! TTATGGTCTTGATGAAGTAA+TGG + chr3_2:20512339-20512358 Msa0398630:CDS 30.0%
TGAATTAGTCGAATTTGAAG+AGG + chr3_2:20512366-20512385 Msa0398630:intron 30.0%
GAATTAGTCGAATTTGAAGA+GGG + chr3_2:20512367-20512386 Msa0398630:intron 30.0%
ATGATTTCAGCATTAGTATC+AGG - chr3_2:20513102-20513121 None:intergenic 30.0%
ACGTCTTTATTATCAGTTTC+AGG - chr3_2:20513527-20513546 None:intergenic 30.0%
ATTCTGATACTAACCTATTC+AGG + chr3_2:20513574-20513593 Msa0398630:intron 30.0%
!! ATCTTATGACCTTTTAGGAA+TGG - chr3_2:20513624-20513643 None:intergenic 30.0%
GAAGTAAAGAATCCTAGTTA+TGG - chr3_2:20513694-20513713 None:intergenic 30.0%
GATTCTTTACTTCCAATGAT+TGG + chr3_2:20513701-20513720 Msa0398630:intron 30.0%
CATGTCATGTAAACAATTCA+TGG - chr3_2:20513735-20513754 None:intergenic 30.0%
GTTTATGTTACTATGCATGT+TGG + chr3_2:20513878-20513897 Msa0398630:intron 30.0%
GCATAAATATAGCCATTGTT+CGG - chr3_2:20513962-20513981 None:intergenic 30.0%
TTGGAATTTAACATTTGCCT+TGG - chr3_2:20514037-20514056 None:intergenic 30.0%
TGGAGGAAATTGTTTAAACA+AGG - chr3_2:20514100-20514119 None:intergenic 30.0%
!! TATGATAGTGTTGATATTGG+AGG - chr3_2:20514117-20514136 None:intergenic 30.0%
AAATTCTATCCTCCAACATT+AGG + chr3_2:20514235-20514254 Msa0398630:intron 30.0%
TACTACTTTAGTCCTAATGT+TGG - chr3_2:20514250-20514269 None:intergenic 30.0%
TATAATTTACTACCCAAAGG+TGG + chr3_2:20514379-20514398 Msa0398630:intron 30.0%
ATAATTTACTACCCAAAGGT+GGG + chr3_2:20514380-20514399 Msa0398630:intron 30.0%
ATAGGACTGTTTATTCATGT+TGG - chr3_2:20514889-20514908 None:intergenic 30.0%
AATTCCAACTGTTGTATAAG+TGG - chr3_2:20514915-20514934 None:intergenic 30.0%
ATTCACAACTTAGTCGTTTA+AGG + chr3_2:20514932-20514951 Msa0398630:intron 30.0%
AATCATGTTTGGTTGTATTC+TGG - chr3_2:20515026-20515045 None:intergenic 30.0%
!! TGAGGTATAAGTTGTTTTCA+AGG - chr3_2:20515117-20515136 None:intergenic 30.0%
!! AACTAAAAGTGCCTAAATTG+AGG - chr3_2:20515135-20515154 None:intergenic 30.0%
TACTAGCAGTCAAAAATACA+GGG + chr3_2:20515195-20515214 Msa0398630:intron 30.0%
! TATGATTTTGGATTCCTACT+TGG - chr3_2:20515275-20515294 None:intergenic 30.0%
AACAAGGTCACAATATGATA+AGG + chr3_2:20515393-20515412 Msa0398630:intron 30.0%
TGGAAAGAATGATGAGAATT+AGG + chr3_2:20515456-20515475 Msa0398630:intron 30.0%
AAAGAATGATGAGAATTAGG+TGG + chr3_2:20515459-20515478 Msa0398630:intron 30.0%
AAGAATGATGAGAATTAGGT+GGG + chr3_2:20515460-20515479 Msa0398630:intron 30.0%
! TTTTGGTCATTACTCATCTA+AGG - chr3_2:20515602-20515621 None:intergenic 30.0%
ACCGAATCAAATTATTCCAA+TGG - chr3_2:20515709-20515728 None:intergenic 30.0%
!!! TTTTTTAGGGAAAGGCAAAA+TGG - chr3_2:20515755-20515774 None:intergenic 30.0%
!!! TTAGGGTTTTTTTTAGGGAA+AGG - chr3_2:20515763-20515782 None:intergenic 30.0%
! GATACTGAATTTTTACATGC+GGG + chr3_2:20515794-20515813 Msa0398630:intron 30.0%
! ATACTGAATTTTTACATGCG+GGG + chr3_2:20515795-20515814 Msa0398630:intron 30.0%
! ATTGATTCTATGATCCCTAT+AGG + chr3_2:20515852-20515871 Msa0398630:intron 30.0%
TTGATTCTATGATCCCTATA+GGG + chr3_2:20515853-20515872 Msa0398630:intron 30.0%
AGATACAATTCTCAATCAAC+AGG + chr3_2:20516035-20516054 Msa0398630:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + chr3_2:20516036-20516055 Msa0398630:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + chr3_2:20516120-20516139 Msa0398630:CDS 30.0%
AACTACTTTACAAGAAAGAG+GGG + chr3_2:20516122-20516141 Msa0398630:CDS 30.0%
AATGGAGTACACTATTATAG+TGG + chr3_2:20516146-20516165 Msa0398630:CDS 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr3_2:20516311-20516330 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr3_2:20516399-20516418 Msa0398630:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr3_2:20516505-20516524 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr3_2:20516518-20516537 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr3_2:20516605-20516624 Msa0398630:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr3_2:20516626-20516645 Msa0398630:CDS 30.0%
ACTATTTATACTGGAACGAA+TGG + chr3_2:20516801-20516820 Msa0398630:intron 30.0%
GTAAATTTCTCGTTGAGTTA+AGG + chr3_2:20516856-20516875 Msa0398630:intron 30.0%
AGAAAAAATTTGCGTCCAAT+AGG + chr3_2:20517236-20517255 Msa0398630:intron 30.0%
ACTAATTTCATCTGCACGAA+TGG - chr3_2:20512224-20512243 None:intergenic 35.0%
ACCATCAATAGGTTTAGCTA+GGG - chr3_2:20512547-20512566 None:intergenic 35.0%
AAATTTCAGCTTCGGAATCT+CGG + chr3_2:20512574-20512593 Msa0398630:intron 35.0%
! ATGTGCGCTAAATTTAGTTC+TGG + chr3_2:20512687-20512706 Msa0398630:intron 35.0%
TTGCTGTATGAATACATGTC+TGG + chr3_2:20512780-20512799 Msa0398630:intron 35.0%
! TGATTTTACGGAATAAACCC+AGG + chr3_2:20513197-20513216 Msa0398630:intron 35.0%
ATTCTCAAGTCCACTACTAA+CGG + chr3_2:20513448-20513467 Msa0398630:intron 35.0%
! TACTAACCTATTCAGGTTCT+AGG + chr3_2:20513581-20513600 Msa0398630:intron 35.0%
TGTCATATGCCATTCCTAAA+AGG + chr3_2:20513612-20513631 Msa0398630:intron 35.0%
! GGGAAATCTTATGACCTTTT+AGG - chr3_2:20513629-20513648 None:intergenic 35.0%
GAATCCTAGTTATGGAAGTT+CGG - chr3_2:20513686-20513705 None:intergenic 35.0%
TCATGTAAACAATTCATGGG+TGG - chr3_2:20513731-20513750 None:intergenic 35.0%
TTATGTAATGGCACCTAAGT+TGG + chr3_2:20513793-20513812 Msa0398630:intron 35.0%
ATTTAGCAATCCTCCAACTT+AGG - chr3_2:20513809-20513828 None:intergenic 35.0%
! GGAGTATCTTAAAACATTCC+TGG + chr3_2:20513899-20513918 Msa0398630:intron 35.0%
TTCAAATTCTAGCCGAACAA+TGG + chr3_2:20513947-20513966 Msa0398630:intron 35.0%
!! GTAACCATTTCTAGTAACCA+AGG + chr3_2:20514017-20514036 Msa0398630:intron 35.0%
TTTGCCTTGGTTACTAGAAA+TGG - chr3_2:20514024-20514043 None:intergenic 35.0%
TACTTTAGTCCTAATGTTGG+AGG - chr3_2:20514247-20514266 None:intergenic 35.0%
TAGTTAGTAAACCCACCTTT+GGG - chr3_2:20514394-20514413 None:intergenic 35.0%
TTAGTTAGTAAACCCACCTT+TGG - chr3_2:20514395-20514414 None:intergenic 35.0%
! AAGGTGGGTTTACTAACTAA+AGG + chr3_2:20514395-20514414 Msa0398630:intron 35.0%
! ATTTTTCCAAGAGTGATTCG+AGG - chr3_2:20514427-20514446 None:intergenic 35.0%
! AGTCAAGGCATAAGCTATTT+TGG - chr3_2:20514512-20514531 None:intergenic 35.0%
TAGCTTATGCCTTGACTTAT+AGG + chr3_2:20514515-20514534 Msa0398630:intron 35.0%
AAGTCAAGACCTATAAGTCA+AGG - chr3_2:20514527-20514546 None:intergenic 35.0%
!! TATATGCTGGTTGATGAGTT+AGG - chr3_2:20514583-20514602 None:intergenic 35.0%
! GAAGTGCTTAAATAGCCAAA+CGG - chr3_2:20514643-20514662 None:intergenic 35.0%
CTGTTGTATAAGTGGTTCAT+AGG - chr3_2:20514907-20514926 None:intergenic 35.0%
TGAACCACTTATACAACAGT+TGG + chr3_2:20514908-20514927 Msa0398630:intron 35.0%
AGGTGAAGTGTAATCATGTT+TGG - chr3_2:20515037-20515056 None:intergenic 35.0%
! ACTTTTGATGCAAGTGGTTT+AGG - chr3_2:20515057-20515076 None:intergenic 35.0%
! AGTTAGACTTTTGATGCAAG+TGG - chr3_2:20515063-20515082 None:intergenic 35.0%
!! GTTTTAGTGTTGTTGCTGTT+GGG - chr3_2:20515169-20515188 None:intergenic 35.0%
!! AGTTTTAGTGTTGTTGCTGT+TGG - chr3_2:20515170-20515189 None:intergenic 35.0%
CTACTAGCAGTCAAAAATAC+AGG + chr3_2:20515194-20515213 Msa0398630:intron 35.0%
!!! CAAGTTTTGAGACCTTATGT+TGG - chr3_2:20515371-20515390 None:intergenic 35.0%
AATTAGGTGGGAGAAGAAAA+AGG + chr3_2:20515472-20515491 Msa0398630:intron 35.0%
ATTAGGTGGGAGAAGAAAAA+GGG + chr3_2:20515473-20515492 Msa0398630:intron 35.0%
!! GGAGGAGATATTTTTGATGA+GGG + chr3_2:20515521-20515540 Msa0398630:intron 35.0%
TTTGATGAGGGAGAAAAGAA+TGG + chr3_2:20515533-20515552 Msa0398630:intron 35.0%
TTGATGAGGGAGAAAAGAAT+GGG + chr3_2:20515534-20515553 Msa0398630:intron 35.0%
ACTCATCTAAGGACTGTAAA+AGG - chr3_2:20515591-20515610 None:intergenic 35.0%
! TTGAGGAAGAGTGTAGAAAA+GGG - chr3_2:20515627-20515646 None:intergenic 35.0%
!! TGGAATAATTTGATTCGGTC+TGG + chr3_2:20515710-20515729 Msa0398630:intron 35.0%
TATTACAGAGCCTCTTCAAA+CGG + chr3_2:20515818-20515837 Msa0398630:intron 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr3_2:20516251-20516270 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr3_2:20516405-20516424 Msa0398630:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr3_2:20516535-20516554 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr3_2:20516551-20516570 Msa0398630:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr3_2:20516552-20516571 Msa0398630:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr3_2:20516561-20516580 None:intergenic 35.0%
CTGAATAGCTTCCTTCAAAA+GGG - chr3_2:20516958-20516977 None:intergenic 35.0%
! GATGGAACTCTTTTTACTTC+AGG + chr3_2:20516983-20517002 Msa0398630:intron 35.0%
GGTATAGGTTCAAATCCTAT+TGG - chr3_2:20517254-20517273 None:intergenic 35.0%
AGGATTTGAACCTATACCAA+AGG + chr3_2:20517256-20517275 Msa0398630:intron 35.0%
! ACAGGTACTGTACTTCAAGT+AGG + chr3_2:20512298-20512317 Msa0398630:CDS 40.0%
!! CTGAGGCATTGCTTTGAATT+TGG + chr3_2:20512392-20512411 Msa0398630:intron 40.0%
! GGTGTTGTATTAATGGGTGA+TGG + chr3_2:20512429-20512448 Msa0398630:intron 40.0%
!! TGATGGTTTGCTGATACAAG+AGG + chr3_2:20512446-20512465 Msa0398630:intron 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + chr3_2:20512447-20512466 Msa0398630:intron 40.0%
ACCACTAAGTGAGGGTTATT+TGG + chr3_2:20512506-20512525 Msa0398630:intron 40.0%
CCACTAAGTGAGGGTTATTT+GGG + chr3_2:20512507-20512526 Msa0398630:intron 40.0%
GACCATCAATAGGTTTAGCT+AGG - chr3_2:20512548-20512567 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG - chr3_2:20512558-20512577 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + chr3_2:20512566-20512585 Msa0398630:intron 40.0%
GAACGTCTGGAAATAATACC+GGG - chr3_2:20512618-20512637 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG - chr3_2:20512619-20512638 None:intergenic 40.0%
AAGTTTAGTATGGGCGTTAC+AGG - chr3_2:20512651-20512670 None:intergenic 40.0%
TTCCACCTATCCTAAGTTGT+AGG + chr3_2:20512948-20512967 Msa0398630:intron 40.0%
GATTGCCTACAACTTAGGAT+AGG - chr3_2:20512956-20512975 None:intergenic 40.0%
CTAAGTTGTAGGCAATCTCA+GGG + chr3_2:20512959-20512978 Msa0398630:intron 40.0%
! TCTCTAAGCTCAACCCTTTT+TGG + chr3_2:20513001-20513020 Msa0398630:intron 40.0%
! CTCTAAGCTCAACCCTTTTT+GGG + chr3_2:20513002-20513021 Msa0398630:intron 40.0%
! TTTTACGGAATAAACCCAGG+TGG + chr3_2:20513200-20513219 Msa0398630:intron 40.0%
TCAGAGTGGAATAAATTCCG+GGG - chr3_2:20513231-20513250 None:intergenic 40.0%
GTCAGAGTGGAATAAATTCC+GGG - chr3_2:20513232-20513251 None:intergenic 40.0%
GGTCAGAGTGGAATAAATTC+CGG - chr3_2:20513233-20513252 None:intergenic 40.0%
GGAATTTATTCCACTCTGAC+CGG + chr3_2:20513232-20513251 Msa0398630:intron 40.0%
TGACCGGTAATAATTCCAAC+TGG + chr3_2:20513248-20513267 Msa0398630:intron 40.0%
! GGAACCTTTTGTATCCTAAC+TGG + chr3_2:20513353-20513372 Msa0398630:intron 40.0%
TTCTCAAGTCCACTACTAAC+GGG + chr3_2:20513449-20513468 Msa0398630:intron 40.0%
GATATGCCTAGAACCTGAAT+AGG - chr3_2:20513590-20513609 None:intergenic 40.0%
TAAGCCGAACTTCCATAACT+AGG + chr3_2:20513679-20513698 Msa0398630:intron 40.0%
! ATGGGTGGATTTCCAATCAT+TGG - chr3_2:20513716-20513735 None:intergenic 40.0%
! GTTAGGAGTATGTCACAAGT+GGG - chr3_2:20514566-20514585 None:intergenic 40.0%
! AGTTAGGAGTATGTCACAAG+TGG - chr3_2:20514567-20514586 None:intergenic 40.0%
!! GAGTTTCTAGTTAAGCCGTT+TGG - chr3_2:20514820-20514839 None:intergenic 40.0%
TACCTTCTAATGCTCCAAGT+AGG + chr3_2:20515258-20515277 Msa0398630:intron 40.0%
! TTCCTACTTGGAGCATTAGA+AGG - chr3_2:20515263-20515282 None:intergenic 40.0%
! CTTTTCATGTCTTCTGTCCA+AGG + chr3_2:20515336-20515355 Msa0398630:intron 40.0%
!! GGTCTCAAAACTTGCTAACA+AGG + chr3_2:20515377-20515396 Msa0398630:intron 40.0%
TCTTCTAACTCTCTCTCTCT+CGG - chr3_2:20515499-20515518 None:intergenic 40.0%
AGAGAGAGAGAGTTAGAAGA+GGG + chr3_2:20515499-20515518 Msa0398630:intron 40.0%
!! GGGAGGAGATATTTTTGATG+AGG + chr3_2:20515520-20515539 Msa0398630:intron 40.0%
!!! GAGTGTAGAAAAGGGCATTT+TGG - chr3_2:20515619-20515638 None:intergenic 40.0%
! GTTGAGGAAGAGTGTAGAAA+AGG - chr3_2:20515628-20515647 None:intergenic 40.0%
TTACATTCAGCGTGATCCAT+TGG + chr3_2:20515690-20515709 Msa0398630:intron 40.0%
ATTACAGAGCCTCTTCAAAC+GGG + chr3_2:20515819-20515838 Msa0398630:intron 40.0%
ATTATTGGGGACAGACAAAC+AGG + chr3_2:20515994-20516013 Msa0398630:intron 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + chr3_2:20516089-20516108 Msa0398630:CDS 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + chr3_2:20516128-20516147 Msa0398630:CDS 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr3_2:20516460-20516479 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr3_2:20516461-20516480 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr3_2:20516619-20516638 None:intergenic 40.0%
TCTTCTACCAAGACATTCAC+TGG + chr3_2:20516921-20516940 Msa0398630:intron 40.0%
CTTCTACCAAGACATTCACT+GGG + chr3_2:20516922-20516941 Msa0398630:intron 40.0%
TTCTACCAAGACATTCACTG+GGG + chr3_2:20516923-20516942 Msa0398630:intron 40.0%
CCTGAATAGCTTCCTTCAAA+AGG - chr3_2:20516959-20516978 None:intergenic 40.0%
!! CCTTTTGAAGGAAGCTATTC+AGG + chr3_2:20516956-20516975 Msa0398630:intron 40.0%
ACTGTACTTCAAGTAGGCGA+CGG + chr3_2:20512304-20512323 Msa0398630:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG + chr3_2:20512322-20512341 Msa0398630:CDS 45.0%
GGTCTTGATGAAGTAATGGC+AGG + chr3_2:20512343-20512362 Msa0398630:CDS 45.0%
!! CGAATTTGAAGAGGGTACTG+AGG + chr3_2:20512375-20512394 Msa0398630:intron 45.0%
GCTGATACAAGAGGGAAGTT+CGG + chr3_2:20512455-20512474 Msa0398630:intron 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + chr3_2:20512468-20512487 Msa0398630:intron 45.0%
TGCTCAGATACCACTAAGTG+AGG + chr3_2:20512497-20512516 Msa0398630:intron 45.0%
GCTCAGATACCACTAAGTGA+GGG + chr3_2:20512498-20512517 Msa0398630:intron 45.0%
CCCAAATAACCCTCACTTAG+TGG - chr3_2:20512510-20512529 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + chr3_2:20512543-20512562 Msa0398630:intron 45.0%
! GCTAAACCTATTGATGGTCG+AGG + chr3_2:20512549-20512568 Msa0398630:intron 45.0%
TCTGGAAATAATACCGGGAG+CGG - chr3_2:20512613-20512632 None:intergenic 45.0%
TAAAAGGGATTGGGGTGAGA+CGG + chr3_2:20512911-20512930 Msa0398630:intron 45.0%
TGCCTACAACTTAGGATAGG+TGG - chr3_2:20512953-20512972 None:intergenic 45.0%
CCTGAGATTGCCTACAACTT+AGG - chr3_2:20512961-20512980 None:intergenic 45.0%
CCTAAGTTGTAGGCAATCTC+AGG + chr3_2:20512958-20512977 Msa0398630:intron 45.0%
GTCATGCTTAACTGAGCGAT+CGG + chr3_2:20513038-20513057 Msa0398630:intron 45.0%
TCATGCTTAACTGAGCGATC+GGG + chr3_2:20513039-20513058 Msa0398630:intron 45.0%
GGAATTATTACCGGTCAGAG+TGG - chr3_2:20513245-20513264 None:intergenic 45.0%
CCGCCAGTTGGAATTATTAC+CGG - chr3_2:20513254-20513273 None:intergenic 45.0%
CCGGTAATAATTCCAACTGG+CGG + chr3_2:20513251-20513270 Msa0398630:intron 45.0%
CGGTAATAATTCCAACTGGC+GGG + chr3_2:20513252-20513271 Msa0398630:intron 45.0%
CTCGCCAGTTAGGATACAAA+AGG - chr3_2:20513360-20513379 None:intergenic 45.0%
! CTTTTGTATCCTAACTGGCG+AGG + chr3_2:20513358-20513377 Msa0398630:intron 45.0%
!! TTTTGCTATCCTCGCCAGTT+AGG - chr3_2:20513370-20513389 None:intergenic 45.0%
TCTCAAGTCCACTACTAACG+GGG + chr3_2:20513450-20513469 Msa0398630:intron 45.0%
! TGTAATGGCACCTAAGTTGG+AGG + chr3_2:20513796-20513815 Msa0398630:intron 45.0%
AACTCACCTCGAATCACTCT+TGG + chr3_2:20514418-20514437 Msa0398630:intron 45.0%
!! ACAAGTGGGTTGGACTGTTT+CGG - chr3_2:20514552-20514571 None:intergenic 45.0%
ATAGCCAAACGGCAAACTTC+TGG - chr3_2:20514632-20514651 None:intergenic 45.0%
! TATGTTGGTGAACCAAGCCT+TGG - chr3_2:20515356-20515375 None:intergenic 45.0%
! AGGCTTGGTTCACCAACATA+AGG + chr3_2:20515356-20515375 Msa0398630:intron 45.0%
GAGAGAGAGAGAGTTAGAAG+AGG + chr3_2:20515498-20515517 Msa0398630:intron 45.0%
GAGAGAGAGAGTTAGAAGAG+GGG + chr3_2:20515500-20515519 Msa0398630:intron 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - chr3_2:20515831-20515850 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - chr3_2:20516189-20516208 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + chr3_2:20516198-20516217 Msa0398630:CDS 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr3_2:20516285-20516304 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr3_2:20516286-20516305 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr3_2:20516318-20516337 Msa0398630:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr3_2:20516447-20516466 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr3_2:20516444-20516463 Msa0398630:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr3_2:20516528-20516547 Msa0398630:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr3_2:20516573-20516592 Msa0398630:CDS 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr3_2:20516578-20516597 Msa0398630:CDS 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr3_2:20516612-20516631 Msa0398630:CDS 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr3_2:20516777-20516796 None:intergenic 45.0%
GGAAGCTATTCAGGAACAGA+TGG + chr3_2:20516965-20516984 Msa0398630:intron 45.0%
TTAATCGAATCTCCCGCTCC+CGG + chr3_2:20512597-20512616 Msa0398630:intron 50.0%
CTGGAAATAATACCGGGAGC+GGG - chr3_2:20512612-20512631 None:intergenic 50.0%
TGGCAAGGAGACAATACAGG+AGG - chr3_2:20512864-20512883 None:intergenic 50.0%
ACGTGGCAAGGAGACAATAC+AGG - chr3_2:20512867-20512886 None:intergenic 50.0%
TCAGATCAGCAGGTTGTACG+TGG - chr3_2:20512884-20512903 None:intergenic 50.0%
AAAAGGGATTGGGGTGAGAC+GGG + chr3_2:20512912-20512931 Msa0398630:intron 50.0%
TAGGCAATCTCAGGGAACCT+AGG + chr3_2:20512967-20512986 Msa0398630:intron 50.0%
TAGAGACAGATGGCGATCCT+AGG - chr3_2:20512987-20513006 None:intergenic 50.0%
GGGTTGAGCTTAGAGACAGA+TGG - chr3_2:20512997-20513016 None:intergenic 50.0%
CATGCTTAACTGAGCGATCG+GGG + chr3_2:20513040-20513059 Msa0398630:intron 50.0%
ATGCTTAACTGAGCGATCGG+GGG + chr3_2:20513041-20513060 Msa0398630:intron 50.0%
AACCCAACTAACGGGGATAC+CGG + chr3_2:20513275-20513294 Msa0398630:intron 50.0%
CCACGATAATCAGAGGAGTC+CGG - chr3_2:20513297-20513316 None:intergenic 50.0%
CGGACTCCTCTGATTATCGT+GGG + chr3_2:20513295-20513314 Msa0398630:intron 50.0%
GGACTCCTCTGATTATCGTG+GGG + chr3_2:20513296-20513315 Msa0398630:intron 50.0%
GATGACCCCACGATAATCAG+AGG - chr3_2:20513304-20513323 None:intergenic 50.0%
TTATCGTGGGGTCATCCTCA+CGG + chr3_2:20513308-20513327 Msa0398630:intron 50.0%
TACAAAAGGTTCCCGCCAGT+TGG - chr3_2:20513346-20513365 None:intergenic 50.0%
! GTTTTGCTCCCCGTTAGTAG+TGG - chr3_2:20513461-20513480 None:intergenic 50.0%
ACTAACGGGGAGCAAAACAG+AGG + chr3_2:20513463-20513482 Msa0398630:intron 50.0%
GGAGTATGTCACAAGTGGGT+TGG - chr3_2:20514562-20514581 None:intergenic 50.0%
TTCTGGTGCAGGGACTGAAA+TGG - chr3_2:20514615-20514634 None:intergenic 50.0%
AACGGCAAACTTCTGGTGCA+GGG - chr3_2:20514625-20514644 None:intergenic 50.0%
AAACGGCAAACTTCTGGTGC+AGG - chr3_2:20514626-20514645 None:intergenic 50.0%
TGCACCAGAAGTTTGCCGTT+TGG + chr3_2:20514625-20514644 Msa0398630:intron 50.0%
CATGTCTTCTGTCCAAGGCT+TGG + chr3_2:20515341-20515360 Msa0398630:intron 50.0%
AGAGAGAGTTAGAAGAGGGG+AGG + chr3_2:20515503-20515522 Msa0398630:intron 50.0%
TCTATGATCCCTATAGGGCG+TGG + chr3_2:20515858-20515877 Msa0398630:intron 50.0%
AGCATCTTCTGTGGCTCAAG+TGG + chr3_2:20516098-20516117 Msa0398630:CDS 50.0%
TCCTTATACAGGTGCAGCTC+TGG + chr3_2:20516209-20516228 Msa0398630:CDS 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr3_2:20516289-20516308 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr3_2:20516766-20516785 None:intergenic 50.0%
TGCTTCCCCAGTGAATGTCT+TGG - chr3_2:20516931-20516950 None:intergenic 50.0%
! GGAAGCAGAAGCCCTTTTGA+AGG + chr3_2:20516944-20516963 Msa0398630:intron 50.0%
AGGCTCATACACGGAACGTC+TGG - chr3_2:20512631-20512650 None:intergenic 55.0%
GGGCGTTACAGGCTCATACA+CGG - chr3_2:20512640-20512659 None:intergenic 55.0%
TCAGCAGGTTGTACGTGGCA+AGG - chr3_2:20512879-20512898 None:intergenic 55.0%
TGAGCGATCGGGGGATAACT+AGG + chr3_2:20513050-20513069 Msa0398630:intron 55.0%
AAACCCAGGTGGAGTAACCC+CGG + chr3_2:20513211-20513230 Msa0398630:intron 55.0%
ATTCCGGGGTTACTCCACCT+GGG - chr3_2:20513217-20513236 None:intergenic 55.0%
AATTCCGGGGTTACTCCACC+TGG - chr3_2:20513218-20513237 None:intergenic 55.0%
TTAGTTGGGTTCCCGCCAGT+TGG - chr3_2:20513266-20513285 None:intergenic 55.0%
ACTGGCGGGAACCCAACTAA+CGG + chr3_2:20513266-20513285 Msa0398630:intron 55.0%
GTCCGGTATCCCCGTTAGTT+GGG - chr3_2:20513280-20513299 None:intergenic 55.0%
AGTCCGGTATCCCCGTTAGT+TGG - chr3_2:20513281-20513300 None:intergenic 55.0%
CCGGACTCCTCTGATTATCG+TGG + chr3_2:20513294-20513313 Msa0398630:intron 55.0%
ATAGTGCCCGTTCCAACTGG+CGG + chr3_2:20513331-20513350 Msa0398630:intron 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG - chr3_2:20513341-20513360 None:intergenic 55.0%
GGCGAGGATAGCAAAAGCCA+CGG + chr3_2:20513374-20513393 Msa0398630:intron 55.0%
CTGCACCTGTATAAGGAGCG+AGG - chr3_2:20516206-20516225 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - chr3_2:20516213-20516232 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr3_2:20516278-20516297 Msa0398630:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr3_2:20516583-20516602 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr3_2:20516581-20516600 Msa0398630:CDS 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr3_2:20516767-20516786 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr3_2:20516764-20516783 Msa0398630:intron 55.0%
CTGGCGGGAACCCAACTAAC+GGG + chr3_2:20513267-20513286 Msa0398630:intron 60.0%
TGGCGGGAACCCAACTAACG+GGG + chr3_2:20513268-20513287 Msa0398630:intron 60.0%
TGGAACGGGCACTATCCGTG+AGG - chr3_2:20513326-20513345 None:intergenic 60.0%
CGGATAGTGCCCGTTCCAAC+TGG + chr3_2:20513328-20513347 Msa0398630:intron 60.0%
TAGTGCCCGTTCCAACTGGC+GGG + chr3_2:20513332-20513351 Msa0398630:intron 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG - chr3_2:20513340-20513359 None:intergenic 60.0%
TTGAGCCGCCGATCCAACTC+TGG - chr3_2:20516589-20516608 None:intergenic 60.0%
GGATACGCTTCGCGACCTGG+TGG - chr3_2:20516336-20516355 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr3_2:20516336-20516355 Msa0398630:CDS 65.0%
CCGGGATACGCTTCGCGACC+TGG - chr3_2:20516339-20516358 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 20512214 20517283 20512214 ID=Msa0398630;Name=Msa0398630
chr3_2 mRNA 20512214 20517283 20512214 ID=Msa0398630-mRNA-1;Parent=Msa0398630;Name=Msa0398630-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.66|0.5|0.33|3|0|297
chr3_2 exon 20512214 20512364 20512214 ID=Msa0398630-mRNA-1:exon:4455;Parent=Msa0398630-mRNA-1
chr3_2 exon 20516016 20516732 20516016 ID=Msa0398630-mRNA-1:exon:4456;Parent=Msa0398630-mRNA-1
chr3_2 exon 20517258 20517283 20517258 ID=Msa0398630-mRNA-1:exon:4457;Parent=Msa0398630-mRNA-1
chr3_2 CDS 20512214 20512364 20512214 ID=Msa0398630-mRNA-1:cds;Parent=Msa0398630-mRNA-1
chr3_2 CDS 20516016 20516732 20516016 ID=Msa0398630-mRNA-1:cds;Parent=Msa0398630-mRNA-1
chr3_2 CDS 20517258 20517283 20517258 ID=Msa0398630-mRNA-1:cds;Parent=Msa0398630-mRNA-1
Gene Sequence

>Msa0398630

ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTCTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGATTTGAACCTATACCAAAGGTTTAG

Protein sequence

>Msa0398630

MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYSMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGFEPIPKV*