AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344180 MtrunA17_CPg0492991 97.196 214 6 0 230 443 12 225 2.29e-152 437
Msa0344180 MtrunA17_Chr4g0015601 97.196 214 6 0 230 443 12 225 3.29e-152 436
Msa0344180 MtrunA17_CPg0493001 85.612 278 32 2 1 275 1098 1370 2.43e-147 459
Msa0344180 MtrunA17_Chr4g0016671 85.612 278 32 2 1 275 1098 1370 2.43e-147 459
Msa0344180 MtrunA17_Chr4g0015591 99.038 208 2 0 1 208 490 697 3.66e-137 415
Msa0344180 MtrunA17_Chr4g0016701 100.000 135 0 0 445 579 111 245 3.40e-87 270
Msa0344180 MtrunA17_CPg0492981 100.000 135 0 0 445 579 111 245 3.40e-87 270
Msa0344180 MtrunA17_Chr4g0015611 100.000 135 0 0 445 579 111 245 3.40e-87 270
Msa0344180 MtrunA17_Chr3g0088491 99.259 135 1 0 445 579 80 214 9.43e-87 268
Msa0344180 MtrunA17_Chr4g0016691 98.361 122 2 0 322 443 1 122 1.58e-81 251
Msa0344180 MtrunA17_Chr4g0060751 97.000 100 3 0 480 579 30 129 2.16e-58 191
Msa0344180 MtrunA17_Chr7g0275181 82.456 114 20 0 133 246 1 114 1.55e-56 186
Msa0344180 MtrunA17_Chr7g0275151 70.370 135 7 1 445 579 33 134 1.66e-53 178
Msa0344180 MtrunA17_Chr7g0275161 90.698 86 8 0 358 443 1 86 3.09e-49 166
Msa0344180 MtrunA17_Chr7g0243011 92.683 82 6 0 144 225 1 82 4.51e-44 152
Msa0344180 MtrunA17_Chr7g0275171 80.682 88 7 1 230 317 12 89 6.87e-44 151
Msa0344180 MtrunA17_Chr4g0016681 97.059 68 2 0 230 297 12 79 4.39e-41 143
Msa0344180 MtrunA17_Chr6g0460191 75.269 93 23 0 487 579 9 101 3.02e-27 105
Msa0344180 MtrunA17_Chr1g0178511 97.143 35 1 0 322 356 1 35 2.19e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344180 ATCG00160.1 89.720 214 22 0 230 443 12 225 1.05e-137 400
Msa0344180 ATCG00170.1 90.749 227 21 0 2 228 1092 1318 2.93e-135 427
Msa0344180 ATCG00150.1 96.296 135 5 0 445 579 115 249 2.08e-83 261

Find 109 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTATACCTGTTATGTTTC+TGG 0.052609 3_1:+2701064 Msa0344180:CDS
ATCTCATTTGGAAACATATC+TGG 0.181531 3_1:+2699937 Msa0344180:CDS
TAATTTCGATATGTCTATTA+TGG 0.208042 3_1:-2698782 None:intergenic
TCTAATATCTGTTCCACTTT+TGG 0.236437 3_1:-2698573 None:intergenic
CTAAGATGTTAATCGGTAAA+AGG 0.238850 3_1:-2700938 None:intergenic
TTACGCTTTGCCGATATAAA+AGG 0.251568 3_1:-2699599 None:intergenic
TGAAATACCCGCATAGAAAT+AGG 0.255569 3_1:-2700868 None:intergenic
ATGGAAGCTGGAGTTCATTT+TGG 0.255790 3_1:+2699542 Msa0344180:CDS
GCTCCTGGAGTCGCCAAATA+TGG 0.258399 3_1:-2698450 None:intergenic
CCTGGGATCGATAAACCTTT+TGG 0.276582 3_1:-2698749 None:intergenic
CCTATACCTGTTATGTTTCT+GGG 0.293135 3_1:+2701065 Msa0344180:CDS
CAAGAGACAATTATCTCATT+TGG 0.294663 3_1:+2699925 Msa0344180:CDS
TGTTACCGAGCTTTATTATT+GGG 0.299555 3_1:+2698930 Msa0344180:CDS
TTGTTACCGAGCTTTATTAT+TGG 0.301429 3_1:+2698929 Msa0344180:CDS
AGCGCAAAGTCGTATTTCTT+TGG 0.301847 3_1:+2698716 Msa0344180:CDS
AAGATCGGCTAACCCATATT+TGG 0.317195 3_1:+2698437 Msa0344180:CDS
TTTAGCAAAAGCCGCTCTTC+GGG 0.336042 3_1:+2699022 Msa0344180:CDS
ATTCCTTGGGGATTCTTGAT+TGG 0.341306 3_1:+2698678 Msa0344180:CDS
ATCAACGATTATTACAATAT+CGG 0.341941 3_1:-2699987 None:intergenic
CTCTTCGGGGTCGTATTGAT+TGG 0.345022 3_1:+2699036 Msa0344180:CDS
GATAAAGGATTTCTCCATAA+TGG 0.357948 3_1:-2698485 None:intergenic
CTAAAATATCTCCTTGATAA+AGG 0.358065 3_1:-2698500 None:intergenic
TTTATCAGAAGCTTGTGATT+TGG 0.358806 3_1:+2699661 Msa0344180:CDS
CTAATTTGTTAAGAATTAAT+CGG 0.359442 3_1:-2700144 None:intergenic
ATCGAAATATCTGCTAGATC+TGG 0.363586 3_1:-2700091 None:intergenic
GCAACCATTCATGGCCATTA+TGG 0.371253 3_1:+2698471 Msa0344180:CDS
ATCTTCTGAAACCAAGACTT+TGG 0.372706 3_1:-2698823 None:intergenic
AAAGTCTTGGTTTCAGAAGA+TGG 0.375293 3_1:+2698825 Msa0344180:CDS
CAAGAATTCTCGGCATTCCT+TGG 0.385715 3_1:+2698664 Msa0344180:CDS
CTTCGAGAATGTATCACTTT+GGG 0.388824 3_1:+2700031 Msa0344180:CDS
GGAAAACAATTCTTAATTGT+TGG 0.390734 3_1:+2699704 Msa0344180:CDS
AAGAATTCTCGGCATTCCTT+GGG 0.401980 3_1:+2698665 Msa0344180:CDS
AAACGAGACTTCGTAAGTTC+AGG 0.412190 3_1:+2699837 Msa0344180:CDS
AAATCTTCTAAGATGTTAAT+CGG 0.412258 3_1:-2700945 None:intergenic
ACCTTAGCTGCGGCTTATAT+AGG 0.418344 3_1:+2701125 Msa0344180:CDS
AGTAGTATTTATATCATTTG+TGG 0.424401 3_1:-2700817 None:intergenic
TGCAGCCCGTGTTACTGAAT+CGG 0.431042 3_1:-2699744 None:intergenic
GTAGTATTTATATCATTTGT+GGG 0.434707 3_1:-2700816 None:intergenic
TGATCAGCAAGAAGAATATA+CGG 0.437056 3_1:+2700006 Msa0344180:CDS
AAGTCGAAAACTAAGTGATA+AGG 0.438506 3_1:-2700976 None:intergenic
ACTCCAGGAGCAACCATTCA+TGG 0.440561 3_1:+2698462 Msa0344180:CDS
AATAATCCCAGAAACATAAC+AGG 0.443207 3_1:-2701071 None:intergenic
TCGGAGGTATGTTAACGAAT+TGG 0.448395 3_1:+2699804 Msa0344180:CDS
CCCAGAAACATAACAGGTAT+AGG 0.450475 3_1:-2701065 None:intergenic
TCAAATAACATCCAAAGTCT+TGG 0.456056 3_1:+2698812 Msa0344180:CDS
TTGGCCATGATACTCGGAAA+TGG 0.459897 3_1:+2699561 Msa0344180:CDS
GGCTTATATAGGTGAATCTA+TGG 0.463562 3_1:+2701136 Msa0344180:CDS
GAGTGTATAACAAGAATTCT+CGG 0.465449 3_1:+2698654 Msa0344180:CDS
CAATAATCCAATTAATTCAC+CGG 0.465805 3_1:-2698868 None:intergenic
TATGGAGAAATCCTTTATCA+AGG 0.470177 3_1:+2698489 Msa0344180:CDS
CTCCTGGAGTCGCCAAATAT+GGG 0.476067 3_1:-2698449 None:intergenic
TCTTCGAGAATGTATCACTT+TGG 0.477646 3_1:+2700030 Msa0344180:CDS
AACGAGACTTCGTAAGTTCA+GGG 0.478021 3_1:+2699838 Msa0344180:CDS
TCAACGATTATTACAATATC+GGG 0.480431 3_1:-2699986 None:intergenic
TTGAGAACGGAGCAAAAGAC+AGG 0.482432 3_1:+2699863 Msa0344180:CDS
TTCTCCATAATGGCCATGAA+TGG 0.483718 3_1:-2698475 None:intergenic
AACCCATATTTGGCGACTCC+AGG 0.484987 3_1:+2698447 Msa0344180:CDS
AGTTTCTTGAAAACTCGCTT+CGG 0.487107 3_1:-2698991 None:intergenic
TTTGGTTAATAAAATCCAAA+AGG 0.488399 3_1:+2698734 Msa0344180:CDS
GATTCCATTTCCGAGTATCA+TGG 0.488914 3_1:-2699565 None:intergenic
TTTGAAGAGATGATGGAAGC+TGG 0.489132 3_1:+2699530 Msa0344180:intron
ATCGGTAAAAGGATTGGAGT+TGG 0.490463 3_1:-2700927 None:intergenic
AACACAAGGTCTTCCAAAAG+TGG 0.491269 3_1:+2698560 Msa0344180:CDS
GTATCGATTAAACAAATCGT+TGG 0.491426 3_1:-2700058 None:intergenic
TATTATGGATGTGTACTCCC+TGG 0.495688 3_1:-2698767 None:intergenic
AGTCGAAAACTAAGTGATAA+GGG 0.500280 3_1:-2700975 None:intergenic
AGAACGAACTGGGCGTGCCT+TGG 0.511332 3_1:+2698896 Msa0344180:CDS
GTAAAAGGATTGGAGTTGGT+TGG 0.515104 3_1:-2700923 None:intergenic
GCTATAGCATCATCATTAGC+TGG 0.518853 3_1:-2700115 None:intergenic
ATTATGGATGTGTACTCCCT+GGG 0.522327 3_1:-2698766 None:intergenic
GGTCGTATTGATTGGTTGAA+AGG 0.523725 3_1:+2699044 Msa0344180:CDS
TTATTGCGAGCAGAACGAAC+TGG 0.524459 3_1:+2698885 Msa0344180:CDS
TCGAAATATCTGCTAGATCT+GGG 0.525094 3_1:-2700090 None:intergenic
AAAATTATAAAGTTACCTCA+TGG 0.526541 3_1:+2700780 Msa0344180:CDS
CCAAAAGGTTTATCGATCCC+AGG 0.528931 3_1:+2698749 Msa0344180:CDS
TGGCCATGAATGGTTGCTCC+TGG 0.529145 3_1:-2698465 None:intergenic
ACCTATATAAGCCGCAGCTA+AGG 0.529655 3_1:-2701126 None:intergenic
TTTATATCGGCAAAGCGTAA+AGG 0.529937 3_1:+2699602 Msa0344180:CDS
ATGTTAATCGGTAAAAGGAT+TGG 0.530907 3_1:-2700933 None:intergenic
GATATAAAAGGTGCCATTCG+AGG 0.542260 3_1:-2699587 None:intergenic
GTAACAAATTGCTTCTTCCA+AGG 0.542955 3_1:-2698913 None:intergenic
TCTCATTTGGAAACATATCT+GGG 0.550552 3_1:+2699938 Msa0344180:CDS
AAGACCTTGTGTTATATCAC+CGG 0.552596 3_1:-2698550 None:intergenic
TCAGTAGCCTATTTCTATGC+GGG 0.553188 3_1:+2700861 Msa0344180:CDS
TTATTCCCAATAATAAAGCT+CGG 0.553354 3_1:-2698935 None:intergenic
GGATTCTGTAATAATAAGAT+CGG 0.553640 3_1:+2698422 Msa0344180:CDS
TATTGCGAGCAGAACGAACT+GGG 0.572451 3_1:+2698886 Msa0344180:CDS
GGGTGGCATAAAATATATGA+CGG 0.585418 3_1:+2699958 Msa0344180:CDS
ACAGGTATAGGAACTACTAA+AGG 0.585481 3_1:-2701053 None:intergenic
TAAGTTCAGGGACTTGAGAA+CGG 0.589134 3_1:+2699850 Msa0344180:CDS
TATATAGGTGAATCTATGGA+AGG 0.605539 3_1:+2701140 Msa0344180:CDS
CAAAAGGTTTATCGATCCCA+GGG 0.609012 3_1:+2698750 Msa0344180:CDS
GGTGGCATAAAATATATGAC+GGG 0.610359 3_1:+2699959 Msa0344180:CDS
AGCAGCCGATTCAGTAACAC+GGG 0.610911 3_1:+2699739 Msa0344180:CDS
ATCAATACGACCCCGAAGAG+CGG 0.623604 3_1:-2699033 None:intergenic
AGAATTCTCGGCATTCCTTG+GGG 0.628635 3_1:+2698666 Msa0344180:CDS
TTTCTGGGATTATTTACAAG+CGG 0.630473 3_1:+2701080 Msa0344180:CDS
AATAATCCAATTAATTCACC+GGG 0.632479 3_1:-2698867 None:intergenic
TCGGAAATGGAATCCTCGAA+TGG 0.635386 3_1:+2699574 Msa0344180:CDS
AAGCAGCCGATTCAGTAACA+CGG 0.653513 3_1:+2699738 Msa0344180:CDS
GTCAGTAGCCTATTTCTATG+CGG 0.655321 3_1:+2700860 Msa0344180:CDS
TTAGCAAAAGCCGCTCTTCG+GGG 0.665173 3_1:+2699023 Msa0344180:CDS
GCACCAATCAAGAATCCCCA+AGG 0.666821 3_1:-2698681 None:intergenic
TGAGAACGGAGCAAAAGACA+GGG 0.670658 3_1:+2699864 Msa0344180:CDS
GGTGCAGCTAATTCTCCATG+AGG 0.714976 3_1:-2700795 None:intergenic
CATTTGGAAACATATCTGGG+TGG 0.732935 3_1:+2699941 Msa0344180:CDS
AGATCCGGTGATATAACACA+AGG 0.736976 3_1:+2698546 Msa0344180:CDS
GTGGCATAAAATATATGACG+GGG 0.737363 3_1:+2699960 Msa0344180:CDS
TAATTGTCTCTTGAACATAG+CGG 0.783646 3_1:-2699915 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAATTTTTTTTTTTTCA+AGG - chr3_1:2699168-2699187 None:intergenic 10.0%
!!! GATAAATAAATTTTTAGATT+TGG + chr3_1:2700224-2700243 Msa0344180:intron 10.0%
!! AATATATATATAACTTGAAA+GGG - chr3_1:2700389-2700408 None:intergenic 10.0%
!! AAATATATATATAACTTGAA+AGG - chr3_1:2700390-2700409 None:intergenic 10.0%
!!! TTTTTAAAAAAAAAAACGTG+TGG + chr3_1:2699474-2699493 Msa0344180:intron 15.0%
!!! TTTTAAAAAAAAAAACGTGT+GGG + chr3_1:2699475-2699494 Msa0344180:intron 15.0%
!! GTCATTATGTTAATAAAAAA+TGG + chr3_1:2699780-2699799 Msa0344180:CDS 15.0%
!!! CTAATTTGTTAAGAATTAAT+CGG - chr3_1:2700147-2700166 None:intergenic 15.0%
!!! AATAAATTTTTAGATTTGGT+TGG + chr3_1:2700228-2700247 Msa0344180:intron 15.0%
!!! ATAAATTTTTAGATTTGGTT+GGG + chr3_1:2700229-2700248 Msa0344180:intron 15.0%
!!! ATAAATATTTTGTGATTAGT+AGG + chr3_1:2700304-2700323 Msa0344180:intron 15.0%
!! TTTGGTTAATAAAATCCAAA+AGG + chr3_1:2698734-2698753 Msa0344180:CDS 20.0%
!! TAATTTCGATATGTCTATTA+TGG - chr3_1:2698785-2698804 None:intergenic 20.0%
!!! TTAAAGAGAATGTTGTTTTA+GGG + chr3_1:2699069-2699088 Msa0344180:CDS 20.0%
!!! AATCAAATAATTTTCTGTGA+TGG - chr3_1:2699217-2699236 None:intergenic 20.0%
!! ATGACCTGATTATATATTAA+CGG + chr3_1:2699371-2699390 Msa0344180:intron 20.0%
!!! CAATTATTTATTGCTATTTC+AGG + chr3_1:2699428-2699447 Msa0344180:intron 20.0%
!! TTTAAAAAAAAAAACGTGTG+GGG + chr3_1:2699476-2699495 Msa0344180:intron 20.0%
!! GATAAATGACAAAAAGATAT+TGG + chr3_1:2699498-2699517 Msa0344180:intron 20.0%
!! TATGTTAATAAAAAATGGCT+CGG + chr3_1:2699785-2699804 Msa0344180:CDS 20.0%
!! ATCAACGATTATTACAATAT+CGG - chr3_1:2699990-2700009 None:intergenic 20.0%
!!! CTATTTATTTTGTTTCGAAT+TGG + chr3_1:2700736-2700755 Msa0344180:intron 20.0%
!! AAAATTATAAAGTTACCTCA+TGG + chr3_1:2700780-2700799 Msa0344180:CDS 20.0%
!! GTAGTATTTATATCATTTGT+GGG - chr3_1:2700819-2700838 None:intergenic 20.0%
!! AGTAGTATTTATATCATTTG+TGG - chr3_1:2700820-2700839 None:intergenic 20.0%
!!! AAATCTTCTAAGATGTTAAT+CGG - chr3_1:2700948-2700967 None:intergenic 20.0%
! GGATTCTGTAATAATAAGAT+CGG + chr3_1:2698422-2698441 Msa0344180:CDS 25.0%
! CTAAAATATCTCCTTGATAA+AGG - chr3_1:2698503-2698522 None:intergenic 25.0%
! ATATATGAAAAATCGAGATC+CGG + chr3_1:2698531-2698550 Msa0344180:CDS 25.0%
!!! ATGTCTAATGTATTTTTACC+CGG + chr3_1:2698849-2698868 Msa0344180:CDS 25.0%
! AATAATCCAATTAATTCACC+GGG - chr3_1:2698870-2698889 None:intergenic 25.0%
! CAATAATCCAATTAATTCAC+CGG - chr3_1:2698871-2698890 None:intergenic 25.0%
! TTATTCCCAATAATAAAGCT+CGG - chr3_1:2698938-2698957 None:intergenic 25.0%
!!! CTTAAAGAGAATGTTGTTTT+AGG + chr3_1:2699068-2699087 Msa0344180:CDS 25.0%
!!! TAAAGAGAATGTTGTTTTAG+GGG + chr3_1:2699070-2699089 Msa0344180:CDS 25.0%
! CTGTGATACATTAGAAATAT+AGG + chr3_1:2699258-2699277 Msa0344180:intron 25.0%
! ATCAAATGACTGCATTTAAA+GGG - chr3_1:2699317-2699336 None:intergenic 25.0%
! AATCAAATGACTGCATTTAA+AGG - chr3_1:2699318-2699337 None:intergenic 25.0%
! TTAAATGCAGTCATTTGATT+TGG + chr3_1:2699318-2699337 Msa0344180:intron 25.0%
! GGAAAACAATTCTTAATTGT+TGG + chr3_1:2699704-2699723 Msa0344180:CDS 25.0%
! TCAACGATTATTACAATATC+GGG - chr3_1:2699989-2700008 None:intergenic 25.0%
!!! ATTAGTTTTTGCAATTTGTG+AGG + chr3_1:2700162-2700181 Msa0344180:intron 25.0%
!!! TTAGTTTTTGCAATTTGTGA+GGG + chr3_1:2700163-2700182 Msa0344180:intron 25.0%
! GTAGGTATTCAAAATAGAAA+AGG + chr3_1:2700322-2700341 Msa0344180:intron 25.0%
! AAGGAAATGAAAGTCAAATA+AGG + chr3_1:2700341-2700360 Msa0344180:intron 25.0%
! ATGAAAGTCAAATAAGGAAA+TGG + chr3_1:2700347-2700366 Msa0344180:intron 25.0%
!!! ATATATTTTTTTTAGAGGGC+AGG + chr3_1:2700402-2700421 Msa0344180:intron 25.0%
!!! TATATTTTTTTTAGAGGGCA+GGG + chr3_1:2700403-2700422 Msa0344180:intron 25.0%
! AACATTTCTATTGGCAAATA+GGG + chr3_1:2700500-2700519 Msa0344180:intron 25.0%
! ATATTCAAAGAAATTCTGAC+CGG - chr3_1:2700632-2700651 None:intergenic 25.0%
! AGAAACAAAGTTCCAATAAA+CGG - chr3_1:2700718-2700737 None:intergenic 25.0%
!! GGTAACTTTATAATTTTCCA+AGG - chr3_1:2700777-2700796 None:intergenic 25.0%
!!! AAAAAAGGATTGGCTTATTT+TGG + chr3_1:2700891-2700910 Msa0344180:CDS 25.0%
GATAAAGGATTTCTCCATAA+TGG - chr3_1:2698488-2698507 None:intergenic 30.0%
TATGGAGAAATCCTTTATCA+AGG + chr3_1:2698489-2698508 Msa0344180:CDS 30.0%
! TCTAATATCTGTTCCACTTT+TGG - chr3_1:2698576-2698595 None:intergenic 30.0%
TCGAAAAAAGAATTGATGCT+TGG + chr3_1:2698628-2698647 Msa0344180:CDS 30.0%
GAGTGTATAACAAGAATTCT+CGG + chr3_1:2698654-2698673 Msa0344180:CDS 30.0%
TCAAATAACATCCAAAGTCT+TGG + chr3_1:2698812-2698831 Msa0344180:CDS 30.0%
! TTTTTACCCGGTGAATTAAT+TGG + chr3_1:2698861-2698880 Msa0344180:CDS 30.0%
!! TTGTTACCGAGCTTTATTAT+TGG + chr3_1:2698929-2698948 Msa0344180:CDS 30.0%
!! TGTTACCGAGCTTTATTATT+GGG + chr3_1:2698930-2698949 Msa0344180:CDS 30.0%
!!! AAAGAGAATGTTGTTTTAGG+GGG + chr3_1:2699071-2699090 Msa0344180:CDS 30.0%
! GTGCATTATTCTTTTGAATC+CGG - chr3_1:2699114-2699133 None:intergenic 30.0%
TTGGCCGTTAATATATAATC+AGG - chr3_1:2699378-2699397 None:intergenic 30.0%
TATAAAAGAGAAGGTTCCAT+CGG + chr3_1:2699403-2699422 Msa0344180:intron 30.0%
GCAATAAATAATTGTTCCGA+TGG - chr3_1:2699422-2699441 None:intergenic 30.0%
!! CATAACTTTTGAAGAGATGA+TGG + chr3_1:2699523-2699542 Msa0344180:intron 30.0%
TTTATCAGAAGCTTGTGATT+TGG + chr3_1:2699661-2699680 Msa0344180:CDS 30.0%
TAATTGTCTCTTGAACATAG+CGG - chr3_1:2699918-2699937 None:intergenic 30.0%
CAAGAGACAATTATCTCATT+TGG + chr3_1:2699925-2699944 Msa0344180:CDS 30.0%
ATCTCATTTGGAAACATATC+TGG + chr3_1:2699937-2699956 Msa0344180:CDS 30.0%
TCTCATTTGGAAACATATCT+GGG + chr3_1:2699938-2699957 Msa0344180:CDS 30.0%
TGATCAGCAAGAAGAATATA+CGG + chr3_1:2700006-2700025 Msa0344180:CDS 30.0%
!! GTATCGATTAAACAAATCGT+TGG - chr3_1:2700061-2700080 None:intergenic 30.0%
!! AATTTTTAGATTTGGTTGGG+CGG + chr3_1:2700232-2700251 Msa0344180:intron 30.0%
AAGTAGGTCAACATTTCTAT+TGG + chr3_1:2700491-2700510 Msa0344180:intron 30.0%
CAACATTTCTATTGGCAAAT+AGG + chr3_1:2700499-2700518 Msa0344180:intron 30.0%
ACATTTCTATTGGCAAATAG+GGG + chr3_1:2700501-2700520 Msa0344180:intron 30.0%
TCAAGTACTTATTACCTCTT+GGG + chr3_1:2700540-2700559 Msa0344180:intron 30.0%
!! TATTTTGTTTCGAATTGGTC+AGG + chr3_1:2700741-2700760 Msa0344180:intron 30.0%
!! ATTTTGTTTCGAATTGGTCA+GGG + chr3_1:2700742-2700761 Msa0344180:intron 30.0%
TATGCGGGTATTTCAAAAAA+AGG + chr3_1:2700876-2700895 Msa0344180:CDS 30.0%
GGGTATTTCAAAAAAAGGAT+TGG + chr3_1:2700881-2700900 Msa0344180:CDS 30.0%
ATGTTAATCGGTAAAAGGAT+TGG - chr3_1:2700936-2700955 None:intergenic 30.0%
CTAAGATGTTAATCGGTAAA+AGG - chr3_1:2700941-2700960 None:intergenic 30.0%
AGTCGAAAACTAAGTGATAA+GGG - chr3_1:2700978-2700997 None:intergenic 30.0%
AAGTCGAAAACTAAGTGATA+AGG - chr3_1:2700979-2700998 None:intergenic 30.0%
!! TCACTTAGTTTTCGACTTTT+CGG + chr3_1:2700981-2701000 Msa0344180:CDS 30.0%
AATAATCCCAGAAACATAAC+AGG - chr3_1:2701074-2701093 None:intergenic 30.0%
!! TTTCTGGGATTATTTACAAG+CGG + chr3_1:2701080-2701099 Msa0344180:CDS 30.0%
TATATAGGTGAATCTATGGA+AGG + chr3_1:2701140-2701159 Msa0344180:CDS 30.0%
AAGACCTTGTGTTATATCAC+CGG - chr3_1:2698553-2698572 None:intergenic 35.0%
!! ATCTTCTGAAACCAAGACTT+TGG - chr3_1:2698826-2698845 None:intergenic 35.0%
AAAGTCTTGGTTTCAGAAGA+TGG + chr3_1:2698825-2698844 Msa0344180:CDS 35.0%
GTAACAAATTGCTTCTTCCA+AGG - chr3_1:2698916-2698935 None:intergenic 35.0%
AGTTTCTTGAAAACTCGCTT+CGG - chr3_1:2698994-2699013 None:intergenic 35.0%
AAAGAATAATGCACCGTTCA+CGG + chr3_1:2699120-2699139 Msa0344180:intron 35.0%
! ATAGGATTGAATGCGCTTTT+AGG + chr3_1:2699276-2699295 Msa0344180:intron 35.0%
! CCTTCTCTTTTATAGACGAT+TGG - chr3_1:2699397-2699416 None:intergenic 35.0%
CCAATCGTCTATAAAAGAGA+AGG + chr3_1:2699394-2699413 Msa0344180:intron 35.0%
!! TATTGCTATTTCAGGATACC+TGG + chr3_1:2699436-2699455 Msa0344180:intron 35.0%
AAAGTGAAAAAAACGAGACC+AGG - chr3_1:2699457-2699476 None:intergenic 35.0%
!! TTCATTTTGGCCATGATACT+CGG + chr3_1:2699555-2699574 Msa0344180:CDS 35.0%
! TCGAATGGCACCTTTTATAT+CGG + chr3_1:2699589-2699608 Msa0344180:CDS 35.0%
TTACGCTTTGCCGATATAAA+AGG - chr3_1:2699602-2699621 None:intergenic 35.0%
TTTATATCGGCAAAGCGTAA+AGG + chr3_1:2699602-2699621 Msa0344180:CDS 35.0%
! GTTAATAAAAAATGGCTCGG+AGG + chr3_1:2699788-2699807 Msa0344180:CDS 35.0%
GGGTGGCATAAAATATATGA+CGG + chr3_1:2699958-2699977 Msa0344180:CDS 35.0%
GGTGGCATAAAATATATGAC+GGG + chr3_1:2699959-2699978 Msa0344180:CDS 35.0%
GTGGCATAAAATATATGACG+GGG + chr3_1:2699960-2699979 Msa0344180:CDS 35.0%
TCTTCGAGAATGTATCACTT+TGG + chr3_1:2700030-2700049 Msa0344180:CDS 35.0%
CTTCGAGAATGTATCACTTT+GGG + chr3_1:2700031-2700050 Msa0344180:CDS 35.0%
TCGAAATATCTGCTAGATCT+GGG - chr3_1:2700093-2700112 None:intergenic 35.0%
ATCGAAATATCTGCTAGATC+TGG - chr3_1:2700094-2700113 None:intergenic 35.0%
CGGTCATAGATTTATGGAAT+CGG + chr3_1:2700252-2700271 Msa0344180:intron 35.0%
CTCAAGTACTTATTACCTCT+TGG + chr3_1:2700539-2700558 Msa0344180:intron 35.0%
CGGATTTCTAACAACTAGAA+TGG - chr3_1:2700593-2700612 None:intergenic 35.0%
ACTCAGATTGGAGAAGAATA+TGG + chr3_1:2700682-2700701 Msa0344180:intron 35.0%
!! TTTTGTTTCGAATTGGTCAG+GGG + chr3_1:2700743-2700762 Msa0344180:intron 35.0%
TGAAATACCCGCATAGAAAT+AGG - chr3_1:2700871-2700890 None:intergenic 35.0%
ACAGGTATAGGAACTACTAA+AGG - chr3_1:2701056-2701075 None:intergenic 35.0%
TCCTATACCTGTTATGTTTC+TGG + chr3_1:2701064-2701083 Msa0344180:CDS 35.0%
CCTATACCTGTTATGTTTCT+GGG + chr3_1:2701065-2701084 Msa0344180:CDS 35.0%
!! TATTTTTGCTACCTTAGCTG+CGG + chr3_1:2701115-2701134 Msa0344180:CDS 35.0%
GGCTTATATAGGTGAATCTA+TGG + chr3_1:2701136-2701155 Msa0344180:CDS 35.0%
AAGATCGGCTAACCCATATT+TGG + chr3_1:2698437-2698456 Msa0344180:CDS 40.0%
TTCTCCATAATGGCCATGAA+TGG - chr3_1:2698478-2698497 None:intergenic 40.0%
AGATCCGGTGATATAACACA+AGG + chr3_1:2698546-2698565 Msa0344180:CDS 40.0%
AACACAAGGTCTTCCAAAAG+TGG + chr3_1:2698560-2698579 Msa0344180:CDS 40.0%
AAGAATTCTCGGCATTCCTT+GGG + chr3_1:2698665-2698684 Msa0344180:CDS 40.0%
ATTCCTTGGGGATTCTTGAT+TGG + chr3_1:2698678-2698697 Msa0344180:CDS 40.0%
AGCGCAAAGTCGTATTTCTT+TGG + chr3_1:2698716-2698735 Msa0344180:CDS 40.0%
CAAAAGGTTTATCGATCCCA+GGG + chr3_1:2698750-2698769 Msa0344180:CDS 40.0%
ATTATGGATGTGTACTCCCT+GGG - chr3_1:2698769-2698788 None:intergenic 40.0%
TATTATGGATGTGTACTCCC+TGG - chr3_1:2698770-2698789 None:intergenic 40.0%
! TTTTAGCAAAAGCCGCTCTT+CGG + chr3_1:2699021-2699040 Msa0344180:CDS 40.0%
!! GGTCGTATTGATTGGTTGAA+AGG + chr3_1:2699044-2699063 Msa0344180:CDS 40.0%
! TCTTTTGAATCCGGTACCAA+CGG - chr3_1:2699105-2699124 None:intergenic 40.0%
! TATATTGCGTTGACCGTGAA+CGG - chr3_1:2699136-2699155 None:intergenic 40.0%
!! TTTGAAGAGATGATGGAAGC+TGG + chr3_1:2699530-2699549 Msa0344180:intron 40.0%
! ATGGAAGCTGGAGTTCATTT+TGG + chr3_1:2699542-2699561 Msa0344180:CDS 40.0%
GATTCCATTTCCGAGTATCA+TGG - chr3_1:2699568-2699587 None:intergenic 40.0%
!! GATATAAAAGGTGCCATTCG+AGG - chr3_1:2699590-2699609 None:intergenic 40.0%
! GTTTTTGATGCAGCAAGCAT+GGG + chr3_1:2699683-2699702 Msa0344180:CDS 40.0%
! TCGGAGGTATGTTAACGAAT+TGG + chr3_1:2699804-2699823 Msa0344180:CDS 40.0%
AAACGAGACTTCGTAAGTTC+AGG + chr3_1:2699837-2699856 Msa0344180:CDS 40.0%
AACGAGACTTCGTAAGTTCA+GGG + chr3_1:2699838-2699857 Msa0344180:CDS 40.0%
TAAGTTCAGGGACTTGAGAA+CGG + chr3_1:2699850-2699869 Msa0344180:CDS 40.0%
! AACATAGCGGCATCTCTTTT+TGG - chr3_1:2699905-2699924 None:intergenic 40.0%
CATTTGGAAACATATCTGGG+TGG + chr3_1:2699941-2699960 Msa0344180:CDS 40.0%
GCTATAGCATCATCATTAGC+TGG - chr3_1:2700118-2700137 None:intergenic 40.0%
GATATATCTGCTGTCGAAGT+AGG + chr3_1:2700475-2700494 Msa0344180:intron 40.0%
GATAGCAATTACAACCCAAG+AGG - chr3_1:2700557-2700576 None:intergenic 40.0%
!! GTCAGTAGCCTATTTCTATG+CGG + chr3_1:2700860-2700879 Msa0344180:CDS 40.0%
!! TCAGTAGCCTATTTCTATGC+GGG + chr3_1:2700861-2700880 Msa0344180:CDS 40.0%
! GTAAAAGGATTGGAGTTGGT+TGG - chr3_1:2700926-2700945 None:intergenic 40.0%
ATCGGTAAAAGGATTGGAGT+TGG - chr3_1:2700930-2700949 None:intergenic 40.0%
CCCAGAAACATAACAGGTAT+AGG - chr3_1:2701068-2701087 None:intergenic 40.0%
GCAACCATTCATGGCCATTA+TGG + chr3_1:2698471-2698490 Msa0344180:CDS 45.0%
CAAGAATTCTCGGCATTCCT+TGG + chr3_1:2698664-2698683 Msa0344180:CDS 45.0%
AGAATTCTCGGCATTCCTTG+GGG + chr3_1:2698666-2698685 Msa0344180:CDS 45.0%
! CCTGGGATCGATAAACCTTT+TGG - chr3_1:2698752-2698771 None:intergenic 45.0%
CCAAAAGGTTTATCGATCCC+AGG + chr3_1:2698749-2698768 Msa0344180:CDS 45.0%
TTATTGCGAGCAGAACGAAC+TGG + chr3_1:2698885-2698904 Msa0344180:CDS 45.0%
TATTGCGAGCAGAACGAACT+GGG + chr3_1:2698886-2698905 Msa0344180:CDS 45.0%
TTTAGCAAAAGCCGCTCTTC+GGG + chr3_1:2699022-2699041 Msa0344180:CDS 45.0%
! CTTTTGAATCCGGTACCAAC+GGG - chr3_1:2699104-2699123 None:intergenic 45.0%
TTGGCCATGATACTCGGAAA+TGG + chr3_1:2699561-2699580 Msa0344180:CDS 45.0%
TCGGAAATGGAATCCTCGAA+TGG + chr3_1:2699574-2699593 Msa0344180:CDS 45.0%
! GGTTTTTGATGCAGCAAGCA+TGG + chr3_1:2699682-2699701 Msa0344180:CDS 45.0%
! AAGCAGCCGATTCAGTAACA+CGG + chr3_1:2699738-2699757 Msa0344180:CDS 45.0%
TTGAGAACGGAGCAAAAGAC+AGG + chr3_1:2699863-2699882 Msa0344180:CDS 45.0%
TGAGAACGGAGCAAAAGACA+GGG + chr3_1:2699864-2699883 Msa0344180:CDS 45.0%
GTTGGGCGGTCATAGATTTA+TGG + chr3_1:2700246-2700265 Msa0344180:intron 45.0%
AAGAAATTCTGACCGGACGT+TGG - chr3_1:2700625-2700644 None:intergenic 45.0%
TCACGTCTCGGATGAATTCA+AGG - chr3_1:2700657-2700676 None:intergenic 45.0%
! TCTGAGTTTTGCTCACGTCT+CGG - chr3_1:2700669-2700688 None:intergenic 45.0%
GACGTGAGCAAAACTCAGAT+TGG + chr3_1:2700670-2700689 Msa0344180:intron 45.0%
TTGGAGAAGAATATGGTCCG+TGG + chr3_1:2700689-2700708 Msa0344180:intron 45.0%
TGGAGAAGAATATGGTCCGT+GGG + chr3_1:2700690-2700709 Msa0344180:intron 45.0%
GTTCCAATAAACGGAACCCA+CGG - chr3_1:2700709-2700728 None:intergenic 45.0%
ACCTTAGCTGCGGCTTATAT+AGG + chr3_1:2701125-2701144 Msa0344180:CDS 45.0%
ACCTATATAAGCCGCAGCTA+AGG - chr3_1:2701129-2701148 None:intergenic 45.0%
!!! TATATATATATTTTTTTTAG+AGG + chr3_1:2700397-2700416 Msa0344180:intron 5.0%
!!! ATATATATATTTTTTTTAGA+GGG + chr3_1:2700398-2700417 Msa0344180:intron 5.0%
AACCCATATTTGGCGACTCC+AGG + chr3_1:2698447-2698466 Msa0344180:CDS 50.0%
CTCCTGGAGTCGCCAAATAT+GGG - chr3_1:2698452-2698471 None:intergenic 50.0%
ACTCCAGGAGCAACCATTCA+TGG + chr3_1:2698462-2698481 Msa0344180:CDS 50.0%
GCACCAATCAAGAATCCCCA+AGG - chr3_1:2698684-2698703 None:intergenic 50.0%
TTAGCAAAAGCCGCTCTTCG+GGG + chr3_1:2699023-2699042 Msa0344180:CDS 50.0%
ATCAATACGACCCCGAAGAG+CGG - chr3_1:2699036-2699055 None:intergenic 50.0%
! CTCTTCGGGGTCGTATTGAT+TGG + chr3_1:2699036-2699055 Msa0344180:CDS 50.0%
TTAGGGGGAATGATACCCGT+TGG + chr3_1:2699086-2699105 Msa0344180:CDS 50.0%
GGAATGATACCCGTTGGTAC+CGG + chr3_1:2699092-2699111 Msa0344180:intron 50.0%
! AGCAGCCGATTCAGTAACAC+GGG + chr3_1:2699739-2699758 Msa0344180:CDS 50.0%
! TGCAGCCCGTGTTACTGAAT+CGG - chr3_1:2699747-2699766 None:intergenic 50.0%
CCGGACGTTGGAATAGTTTG+CGG - chr3_1:2700613-2700632 None:intergenic 50.0%
CCGCAAACTATTCCAACGTC+CGG + chr3_1:2700610-2700629 Msa0344180:intron 50.0%
GGTGCAGCTAATTCTCCATG+AGG - chr3_1:2700798-2700817 None:intergenic 50.0%
GCTCCTGGAGTCGCCAAATA+TGG - chr3_1:2698453-2698472 None:intergenic 55.0%
TGGCCATGAATGGTTGCTCC+TGG - chr3_1:2698468-2698487 None:intergenic 55.0%
GGTCCGTGGGTTCCGTTTAT+TGG + chr3_1:2700703-2700722 Msa0344180:intron 55.0%
AGAACGAACTGGGCGTGCCT+TGG + chr3_1:2698896-2698915 Msa0344180:CDS 60.0%
! GGTCAGGGGCTCTTTTGCCT+TGG + chr3_1:2700757-2700776 Msa0344180:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 2698420 2701172 2698420 ID=Msa0344180;Name=Msa0344180
chr3_1 mRNA 2698420 2701172 2698420 ID=Msa0344180-mRNA-1;Parent=Msa0344180;Name=Msa0344180-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|3|0|579
chr3_1 exon 2698420 2699107 2698420 ID=Msa0344180-mRNA-1:exon:842;Parent=Msa0344180-mRNA-1
chr3_1 exon 2699537 2700178 2699537 ID=Msa0344180-mRNA-1:exon:843;Parent=Msa0344180-mRNA-1
chr3_1 exon 2700763 2701172 2700763 ID=Msa0344180-mRNA-1:exon:844;Parent=Msa0344180-mRNA-1
chr3_1 CDS 2698420 2699107 2698420 ID=Msa0344180-mRNA-1:cds;Parent=Msa0344180-mRNA-1
chr3_1 CDS 2699537 2700178 2699537 ID=Msa0344180-mRNA-1:cds;Parent=Msa0344180-mRNA-1
chr3_1 CDS 2700763 2701172 2700763 ID=Msa0344180-mRNA-1:cds;Parent=Msa0344180-mRNA-1
Gene Sequence

>Msa0344180

ATGGATTCTGTAATAATAAGATCGGCTAACCCATATTTGGCGACTCCAGGAGCAACCATTCATGGCCATTATGGAGAAATCCTTTATCAAGGAGATATTTTAGTTACATTCATATATGAAAAATCGAGATCCGGTGATATAACACAAGGTCTTCCAAAAGTGGAACAGATATTAGAAATACGTTCGATTGATTCAATATCGATGAATCTCGAAAAAAGAATTGATGCTTGGAATGAGTGTATAACAAGAATTCTCGGCATTCCTTGGGGATTCTTGATTGGTGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAATAAAATCCAAAAGGTTTATCGATCCCAGGGAGTACACATCCATAATAGACATATCGAAATTATTGTGCGTCAAATAACATCCAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTATTTTTACCCGGTGAATTAATTGGATTATTGCGAGCAGAACGAACTGGGCGTGCCTTGGAAGAAGCAATTTGTTACCGAGCTTTATTATTGGGAATAACAAAAACATCTCTGAATACTCAAAGTTTCATATCCGAAGCGAGTTTTCAAGAAACTGCTAGAGTTTTAGCAAAAGCCGCTCTTCGGGGTCGTATTGATTGGTTGAAAGGTCTTAAAGAGAATGTTGTTTTAGGGGGAATGATACCCGTTGAGATGATGGAAGCTGGAGTTCATTTTGGCCATGATACTCGGAAATGGAATCCTCGAATGGCACCTTTTATATCGGCAAAGCGTAAAGGTATTCATATTACAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTGGTTTTTGATGCAGCAAGCATGGGAAAACAATTCTTAATTGTTGGTACAAAAAAAAAAGCAGCCGATTCAGTAACACGGGCTGCAATAAGAGCTCGATGTCATTATGTTAATAAAAAATGGCTCGGAGGTATGTTAACGAATTGGTATACTACAGAAACGAGACTTCGTAAGTTCAGGGACTTGAGAACGGAGCAAAAGACAGGGAAACTGAACTCTCTTCCAAAAAGAGATGCCGCTATGTTCAAGAGACAATTATCTCATTTGGAAACATATCTGGGTGGCATAAAATATATGACGGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATACGGCTCTTCGAGAATGTATCACTTTGGGAATTCCAACGATTTGTTTAATCGATACAAATTGTGACCCAGATCTAGCAGATATTTCGATTCCAGCTAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTTTTTGCAATTTGGGCTCTTTTGCCTTGGAAAATTATAAAGTTACCTCATGGAGAATTAGCTGCACCCACAAATGATATAAATACTACTGTTGCATTAGCTTTACTTACGTCAGTAGCCTATTTCTATGCGGGTATTTCAAAAAAAGGATTGGCTTATTTTGGTAAATACATCCAACCAACTCCAATCCTTTTACCGATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCGTTAGTACCTTTAGTAGTTCCTATACCTGTTATGTTTCTGGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCTACCTTAGCTGCGGCTTATATAGGTGAATCTATGGAAGGCCATCATTGA

Protein sequence

>Msa0344180

MDSVIIRSANPYLATPGATIHGHYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVEMMEAGVHFGHDTRKWNPRMAPFISAKRKGIHITNLTRTARFLSEACDLVFDAASMGKQFLIVGTKKKAADSVTRAAIRARCHYVNKKWLGGMLTNWYTTETRLRKFRDLRTEQKTGKLNSLPKRDAAMFKRQLSHLETYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAIWALLPWKIIKLPHGELAAPTNDINTTVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH*