Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107280 | A0A072VRS0 | 95.000 | 60 | 2 | 1 | 290 | 349 | 227 | 285 | 4.96e-25 | 114 |
| Msa0107280 | A0A072VRS0 | 95.690 | 232 | 10 | 0 | 1 | 232 | 1 | 232 | 3.73e-164 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0107280 | 0.808311 | 3.296179e-50 | -8.615850e-47 |
| Msa0030380 | Msa0107280 | 0.824898 | 6.287670e-54 | -8.615850e-47 |
| Msa0032370 | Msa0107280 | 0.814880 | 1.229657e-51 | -8.615850e-47 |
| Msa0046100 | Msa0107280 | 0.816112 | 6.541270e-52 | -8.615850e-47 |
| Msa0084650 | Msa0107280 | 0.831142 | 1.973298e-55 | -8.615850e-47 |
| Msa0095380 | Msa0107280 | 0.831929 | 1.263127e-55 | -8.615850e-47 |
| Msa0107250 | Msa0107280 | 0.980396 | 4.009170e-150 | -8.615850e-47 |
| Msa0107280 | Msa0110970 | 0.809303 | 2.022926e-50 | -8.615850e-47 |
| Msa0107280 | Msa0115270 | 0.802494 | 5.462665e-49 | -8.615850e-47 |
| Msa0107280 | Msa0116770 | 0.800181 | 1.625813e-48 | -8.615850e-47 |
| Msa0107280 | Msa0124340 | 0.806760 | 7.035121e-50 | -8.615850e-47 |
| Msa0107280 | Msa0140390 | 0.801959 | 7.038620e-49 | -8.615850e-47 |
| Msa0107280 | Msa0143080 | 0.801905 | 7.220421e-49 | -8.615850e-47 |
| Msa0107280 | Msa0157290 | 0.808348 | 3.236801e-50 | -8.615850e-47 |
| Msa0107280 | Msa0165210 | 0.806005 | 1.014969e-49 | -8.615850e-47 |
| Msa0107280 | Msa0165220 | 0.800173 | 1.631578e-48 | -8.615850e-47 |
| Msa0107280 | Msa0172350 | 0.813213 | 2.868739e-51 | -8.615850e-47 |
| Msa0107280 | Msa0173740 | 0.827025 | 1.965136e-54 | -8.615850e-47 |
| Msa0107280 | Msa0173820 | 0.828296 | 9.727828e-55 | -8.615850e-47 |
| Msa0107280 | Msa0173830 | 0.816496 | 5.367792e-52 | -8.615850e-47 |
| Msa0107280 | Msa0182680 | 0.804909 | 1.722538e-49 | -8.615850e-47 |
| Msa0107280 | Msa0188890 | 0.807260 | 5.512611e-50 | -8.615850e-47 |
| Msa0107280 | Msa0193120 | 0.809161 | 2.169716e-50 | -8.615850e-47 |
| Msa0107280 | Msa0194480 | 0.805948 | 1.043211e-49 | -8.615850e-47 |
| Msa0107280 | Msa0205850 | 0.800585 | 1.345046e-48 | -8.615850e-47 |
| Msa0107280 | Msa0220580 | 0.802891 | 4.523346e-49 | -8.615850e-47 |
| Msa0107280 | Msa0231380 | 0.807439 | 5.051751e-50 | -8.615850e-47 |
| Msa0107280 | Msa0231880 | 0.802958 | 4.381946e-49 | -8.615850e-47 |
| Msa0107280 | Msa0236980 | 0.809419 | 1.909742e-50 | -8.615850e-47 |
| Msa0107280 | Msa0237230 | 0.801745 | 7.787744e-49 | -8.615850e-47 |
| Msa0107280 | Msa0241640 | 0.813612 | 2.343825e-51 | -8.615850e-47 |
| Msa0107280 | Msa0258760 | 0.800890 | 1.165749e-48 | -8.615850e-47 |
| Msa0107280 | Msa0264570 | 0.804638 | 1.962241e-49 | -8.615850e-47 |
| Msa0107280 | Msa0267760 | 0.810442 | 1.150523e-50 | -8.615850e-47 |
| Msa0107280 | Msa0270660 | 0.808308 | 3.300942e-50 | -8.615850e-47 |
| Msa0107280 | Msa0279790 | 0.833670 | 4.667712e-56 | -8.615850e-47 |
| Msa0107280 | Msa0280900 | 0.813410 | 2.595734e-51 | -8.615850e-47 |
| Msa0107280 | Msa0298700 | 0.820495 | 6.655895e-53 | -8.615850e-47 |
| Msa0107280 | Msa0304920 | 0.801269 | 9.750635e-49 | -8.615850e-47 |
| Msa0107280 | Msa0320100 | 0.817972 | 2.498732e-52 | -8.615850e-47 |
| Msa0107280 | Msa0328210 | 0.800077 | 1.707172e-48 | -8.615850e-47 |
| Msa0107280 | Msa0347360 | 0.806910 | 6.539645e-50 | -8.615850e-47 |
| Msa0107280 | Msa0358170 | 0.814500 | 1.492949e-51 | -8.615850e-47 |
| Msa0107280 | Msa0362780 | 0.801608 | 8.308611e-49 | -8.615850e-47 |
| Msa0107280 | Msa0372660 | 0.815581 | 8.591587e-52 | -8.615850e-47 |
| Msa0107280 | Msa0372670 | 0.803136 | 4.026453e-49 | -8.615850e-47 |
| Msa0107280 | Msa0376040 | 0.810020 | 1.418652e-50 | -8.615850e-47 |
| Msa0107280 | Msa0376510 | 0.803385 | 3.574829e-49 | -8.615850e-47 |
| Msa0107280 | Msa0380040 | 0.831146 | 1.969304e-55 | -8.615850e-47 |
| Msa0107280 | Msa0398950 | 0.804653 | 1.948016e-49 | -8.615850e-47 |
| Msa0107280 | Msa0405370 | 0.808241 | 3.410985e-50 | -8.615850e-47 |
| Msa0107280 | Msa0419820 | 0.803069 | 4.156412e-49 | -8.615850e-47 |
| Msa0107280 | Msa0429290 | 0.817928 | 2.556694e-52 | -8.615850e-47 |
| Msa0107280 | Msa0429950 | 0.812689 | 3.736970e-51 | -8.615850e-47 |
| Msa0107280 | Msa0436050 | 0.819477 | 1.137783e-52 | -8.615850e-47 |
| Msa0107280 | Msa0475580 | 0.814736 | 1.323204e-51 | -8.615850e-47 |
| Msa0107280 | Msa0487910 | 0.800840 | 1.193521e-48 | -8.615850e-47 |
| Msa0107280 | Msa0500720 | 0.803151 | 3.997794e-49 | -8.615850e-47 |
| Msa0107280 | Msa0509390 | 0.814038 | 1.888008e-51 | -8.615850e-47 |
| Msa0107280 | Msa0509900 | 0.807214 | 5.639364e-50 | -8.615850e-47 |
| Msa0107280 | Msa0516040 | 0.813496 | 2.485612e-51 | -8.615850e-47 |
| Msa0107280 | Msa0519000 | 0.815308 | 9.881231e-52 | -8.615850e-47 |
| Msa0107280 | Msa0519220 | 0.815849 | 7.488925e-52 | -8.615850e-47 |
| Msa0107280 | Msa0521880 | 0.815440 | 9.237262e-52 | -8.615850e-47 |
| Msa0107280 | Msa0526710 | 0.817487 | 3.214559e-52 | -8.615850e-47 |
| Msa0107280 | Msa0535030 | 0.809351 | 1.975092e-50 | -8.615850e-47 |
| Msa0107280 | Msa0535060 | 0.807375 | 5.213598e-50 | -8.615850e-47 |
| Msa0107280 | Msa0553220 | -0.803147 | 4.004996e-49 | -8.615850e-47 |
| Msa0107280 | Msa0561540 | -0.811912 | 5.522900e-51 | -8.615850e-47 |
| Msa0107280 | Msa0585230 | 0.812083 | 5.068052e-51 | -8.615850e-47 |
| Msa0107280 | Msa0591060 | 0.839503 | 1.524448e-57 | -8.615850e-47 |
| Msa0107280 | Msa0591770 | 0.830897 | 2.266403e-55 | -8.615850e-47 |
| Msa0107280 | Msa0598460 | 0.822077 | 2.873450e-53 | -8.615850e-47 |
| Msa0107280 | Msa0607200 | 0.803201 | 3.902755e-49 | -8.615850e-47 |
| Msa0107280 | Msa0620810 | 0.800011 | 1.760724e-48 | -8.615850e-47 |
| Msa0107280 | Msa0654760 | -0.826863 | 2.148293e-54 | -8.615850e-47 |
| Msa0107280 | Msa0660540 | 0.804957 | 1.683632e-49 | -8.615850e-47 |
| Msa0107280 | Msa0669850 | 0.803517 | 3.356300e-49 | -8.615850e-47 |
| Msa0107280 | Msa0679710 | 0.801411 | 9.117507e-49 | -8.615850e-47 |
| Msa0107280 | Msa0684500 | 0.814756 | 1.310184e-51 | -8.615850e-47 |
| Msa0107280 | Msa0690520 | 0.806694 | 7.264532e-50 | -8.615850e-47 |
| Msa0107280 | Msa0703230 | 0.803461 | 3.447717e-49 | -8.615850e-47 |
| Msa0107280 | Msa0709500 | 0.803440 | 3.482048e-49 | -8.615850e-47 |
| Msa0107280 | Msa0724830 | 0.807151 | 5.814183e-50 | -8.615850e-47 |
| Msa0107280 | Msa0743260 | 0.833292 | 5.799786e-56 | -8.615850e-47 |
| Msa0107280 | Msa0743720 | 0.805154 | 1.530638e-49 | -8.615850e-47 |
| Msa0107280 | Msa0790610 | 0.808250 | 3.396155e-50 | -8.615850e-47 |
| Msa0107280 | Msa0795090 | 0.804647 | 1.953482e-49 | -8.615850e-47 |
| Msa0107280 | Msa0803620 | 0.813836 | 2.091834e-51 | -8.615850e-47 |
| Msa0107280 | Msa0804230 | 0.800217 | 1.598234e-48 | -8.615850e-47 |
| Msa0107280 | Msa0813720 | 0.811833 | 5.744077e-51 | -8.615850e-47 |
| Msa0107280 | Msa0813740 | 0.804610 | 1.989171e-49 | -8.615850e-47 |
| Msa0107280 | Msa0824660 | 0.806573 | 7.702880e-50 | -8.615850e-47 |
| Msa0107280 | Msa0845750 | 0.804204 | 2.416821e-49 | -8.615850e-47 |
| Msa0107280 | Msa0850960 | 0.816697 | 4.838726e-52 | -8.615850e-47 |
| Msa0107280 | Msa0874500 | 0.803794 | 2.940743e-49 | -8.615850e-47 |
| Msa0107280 | Msa0880140 | 0.804396 | 2.203852e-49 | -8.615850e-47 |
| Msa0107280 | Msa0931520 | 0.803536 | 3.326553e-49 | -8.615850e-47 |
| Msa0107280 | Msa0935850 | 0.805997 | 1.018690e-49 | -8.615850e-47 |
| Msa0107280 | Msa0954130 | 0.812431 | 4.254773e-51 | -8.615850e-47 |
| Msa0107280 | Msa0974530 | 0.803456 | 3.455752e-49 | -8.615850e-47 |
| Msa0107280 | Msa1000940 | 0.816699 | 4.834365e-52 | -8.615850e-47 |
| Msa0107280 | Msa1026760 | 0.802080 | 6.647123e-49 | -8.615850e-47 |
| Msa0107280 | Msa1026790 | 0.814182 | 1.754648e-51 | -8.615850e-47 |
| Msa0107280 | Msa1040400 | 0.812050 | 5.151705e-51 | -8.615850e-47 |
| Msa0107280 | Msa1066490 | 0.811246 | 7.706645e-51 | -8.615850e-47 |
| Msa0107280 | Msa1125760 | 0.806019 | 1.007685e-49 | -8.615850e-47 |
| Msa0107280 | Msa1134110 | 0.820594 | 6.315290e-53 | -8.615850e-47 |
| Msa0107280 | Msa1154030 | 0.803703 | 3.071117e-49 | -8.615850e-47 |
| Msa0107280 | Msa1171360 | 0.805254 | 1.458805e-49 | -8.615850e-47 |
| Msa0107280 | Msa1181850 | 0.813558 | 2.409134e-51 | -8.615850e-47 |
| Msa0107280 | Msa1181860 | 0.820800 | 5.665225e-53 | -8.615850e-47 |
| Msa0107280 | Msa1199220 | 0.817250 | 3.635094e-52 | -8.615850e-47 |
| Msa0107280 | Msa1233890 | 0.823918 | 1.069156e-53 | -8.615850e-47 |
| Msa0107280 | Msa1236100 | 0.801200 | 1.007415e-48 | -8.615850e-47 |
| Msa0107280 | Msa1249870 | 0.803831 | 2.889788e-49 | -8.615850e-47 |
| Msa0107280 | Msa1251730 | 0.815482 | 9.038020e-52 | -8.615850e-47 |
| Msa0107280 | Msa1264020 | 0.806230 | 9.101106e-50 | -8.615850e-47 |
| Msa0107280 | Msa1340020 | 0.803812 | 2.915783e-49 | -8.615850e-47 |
| Msa0107280 | Msa1345360 | 0.800955 | 1.130220e-48 | -8.615850e-47 |
| Msa0107280 | Msa1359040 | 0.805684 | 1.185146e-49 | -8.615850e-47 |
| Msa0107280 | Msa1392200 | 0.810707 | 1.008031e-50 | -8.615850e-47 |
| Msa0107280 | Msa1402730 | 0.812587 | 3.934016e-51 | -8.615850e-47 |
| Msa0107280 | Msa1417530 | 0.800782 | 1.226471e-48 | -8.615850e-47 |
| Msa0107280 | Msa1427760 | 0.803089 | 4.117054e-49 | -8.615850e-47 |
| Msa0107280 | Msa1445100 | 0.802449 | 5.580475e-49 | -8.615850e-47 |
| Msa0107280 | Msa1448510 | 0.804356 | 2.246867e-49 | -8.615850e-47 |
| Msa0107280 | Msa1453080 | 0.810380 | 1.186361e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107280 | MtrunA17_Chr1g0163301 | 95.690 | 232 | 10 | 0 | 1 | 232 | 1 | 232 | 6.54e-167 | 471 |
| Msa0107280 | MtrunA17_Chr1g0163301 | 95.536 | 112 | 4 | 1 | 290 | 401 | 227 | 337 | 5.40e-68 | 218 |
| Msa0107280 | MtrunA17_Chr4g0037581 | 61.714 | 175 | 62 | 3 | 1 | 172 | 1 | 173 | 1.66e-64 | 204 |
| Msa0107280 | MtrunA17_Chr2g0329631 | 44.295 | 149 | 75 | 4 | 89 | 232 | 39 | 184 | 4.49e-30 | 116 |
| Msa0107280 | MtrunA17_Chr4g0037591 | 50.725 | 69 | 33 | 1 | 164 | 232 | 4 | 71 | 7.81e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107280 | AT1G60670.4 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 1.03e-43 | 152 |
| Msa0107280 | AT1G60670.1 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 2.40e-43 | 150 |
| Msa0107280 | AT1G60670.5 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 3.26e-43 | 152 |
| Msa0107280 | AT1G60670.5 | 57.143 | 63 | 26 | 1 | 287 | 349 | 175 | 236 | 8.33e-14 | 71.2 |
| Msa0107280 | AT1G60670.2 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 5.02e-43 | 151 |
| Msa0107280 | AT1G60670.2 | 55.072 | 69 | 30 | 1 | 287 | 355 | 175 | 242 | 3.98e-14 | 72.4 |
| Msa0107280 | AT1G60670.3 | 47.236 | 199 | 81 | 7 | 37 | 232 | 1 | 178 | 7.52e-42 | 148 |
| Msa0107280 | AT1G60670.3 | 55.072 | 69 | 30 | 1 | 287 | 355 | 170 | 237 | 3.96e-14 | 72.0 |
| Msa0107280 | AT1G10820.2 | 46.429 | 196 | 96 | 5 | 37 | 232 | 1 | 187 | 3.49e-41 | 146 |
| Msa0107280 | AT1G10820.2 | 60.870 | 69 | 26 | 1 | 287 | 355 | 179 | 246 | 3.99e-16 | 78.2 |
| Msa0107280 | AT3G07565.4 | 32.990 | 291 | 119 | 7 | 58 | 344 | 41 | 259 | 2.37e-39 | 142 |
| Msa0107280 | AT1G10820.1 | 53.793 | 145 | 63 | 3 | 88 | 232 | 21 | 161 | 1.10e-36 | 134 |
| Msa0107280 | AT1G10820.1 | 60.870 | 69 | 26 | 1 | 287 | 355 | 153 | 220 | 3.64e-16 | 77.8 |
| Msa0107280 | AT3G07565.1 | 38.764 | 178 | 89 | 3 | 58 | 232 | 41 | 201 | 4.84e-33 | 125 |
| Msa0107280 | AT3G07565.3 | 38.547 | 179 | 89 | 4 | 58 | 232 | 41 | 202 | 2.75e-31 | 120 |
| Msa0107280 | AT3G07565.2 | 37.838 | 148 | 73 | 2 | 58 | 202 | 41 | 172 | 1.27e-26 | 105 |
| Msa0107280 | AT1G68160.1 | 36.777 | 242 | 128 | 7 | 1 | 239 | 3 | 222 | 1.38e-20 | 91.3 |
Find 108 sgRNAs with CRISPR-Local
Find 502 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCAATGGGAAATTATTT+TGG | 0.109896 | 1_3:+17336432 | Msa0107280:CDS |
| CACCTTGAAAGTAGATAAAT+TGG | 0.239951 | 1_3:-17340955 | None:intergenic |
| GAAGTGAAGTTATAGTTTCT+TGG | 0.258554 | 1_3:+17336217 | Msa0107280:five_prime_UTR |
| CTTCTTGTTGATTCTGTGCC+TGG | 0.268576 | 1_3:+17336561 | Msa0107280:CDS |
| GGGTTGAATAATGATACTTC+TGG | 0.310719 | 1_3:+17336453 | Msa0107280:CDS |
| TGTTGATGAACAGTATAAAT+TGG | 0.341813 | 1_3:+17336620 | Msa0107280:CDS |
| ATATGAATTCATCTTTGAAT+TGG | 0.346328 | 1_3:+17336358 | Msa0107280:CDS |
| ATGATGTATTCGGGGAATTC+AGG | 0.349298 | 1_3:+17336480 | Msa0107280:CDS |
| TTCCAATTTATCTACTTTCA+AGG | 0.352868 | 1_3:+17340953 | Msa0107280:CDS |
| TTCTGGGATGATGATGTATT+CGG | 0.353610 | 1_3:+17336470 | Msa0107280:CDS |
| TTGTGTGTGGGAAGAATAAT+TGG | 0.355860 | 1_3:-17335835 | None:intergenic |
| ATTTAGGATCTAATTCCATC+TGG | 0.380662 | 1_3:+17336129 | Msa0107280:intron |
| ACTCCGGAATAGTGTGATAT+TGG | 0.380697 | 1_3:-17343942 | None:intergenic |
| CACGAATACGTGGCCACACT+TGG | 0.381306 | 1_3:-17340145 | None:intergenic |
| TTCGTCTGTTATAAGTCAAC+CGG | 0.391697 | 1_3:+17336518 | Msa0107280:CDS |
| CTGTTCGTGATGTTGCTTTG+AGG | 0.405905 | 1_3:+17338987 | Msa0107280:CDS |
| CTTTGAGTAGGCAATCTTGA+TGG | 0.411810 | 1_3:-17343836 | None:intergenic |
| TTGACATACCTCATGATACT+TGG | 0.412002 | 1_3:-17338938 | None:intergenic |
| TTTCCCATTGGAACCATCTC+AGG | 0.412066 | 1_3:-17336423 | None:intergenic |
| TTCTCTTCAAGGAATTTGAA+TGG | 0.419001 | 1_3:+17336159 | Msa0107280:five_prime_UTR |
| TGATCCCGTGAAGCGACTCT+TGG | 0.424126 | 1_3:+17340899 | Msa0107280:CDS |
| AGTCAACCGGGGATTGCGTC+TGG | 0.427021 | 1_3:+17336531 | Msa0107280:CDS |
| GGAATTCAGGCGTTGTTAGT+AGG | 0.427819 | 1_3:+17336493 | Msa0107280:CDS |
| TGGCAGTGCCACTACCCATT+TGG | 0.434605 | 1_3:-17335794 | None:intergenic |
| GGTGTGGAAGTCAATTGTTT+TGG | 0.435394 | 1_3:+17343888 | Msa0107280:CDS |
| TGTGAACGTGGCTGCGGCAG+AGG | 0.438381 | 1_3:+17342157 | Msa0107280:CDS |
| TCTGGGATGATGATGTATTC+GGG | 0.440187 | 1_3:+17336471 | Msa0107280:CDS |
| GTTATAGTTTCTTGGCAAGT+TGG | 0.441203 | 1_3:+17336225 | Msa0107280:five_prime_UTR |
| TGGTAAAGAAGCTCAACAAT+AGG | 0.448131 | 1_3:+17339408 | Msa0107280:CDS |
| ACACAGGAAGTGGAAGCATT+TGG | 0.455633 | 1_3:-17343132 | None:intergenic |
| CATGCAATATCATTTGAATC+TGG | 0.456790 | 1_3:+17336381 | Msa0107280:CDS |
| TTTGGTGCTGCATGGGATTG+AGG | 0.458693 | 1_3:+17343906 | Msa0107280:CDS |
| TTACCAATATCACACTATTC+CGG | 0.461237 | 1_3:+17343939 | Msa0107280:CDS |
| ATTGAAGCATGATGCAGGTT+TGG | 0.461747 | 1_3:+17336584 | Msa0107280:CDS |
| AAAAGTATCAAATGCCAAAT+GGG | 0.463344 | 1_3:+17335780 | Msa0107280:five_prime_UTR |
| CAACGGATACCATATGATAA+TGG | 0.463701 | 1_3:+17340193 | Msa0107280:CDS |
| TTCGTGTGTATCACATCCTA+TGG | 0.470986 | 1_3:+17340162 | Msa0107280:CDS |
| TGAATGTTTGTGGTATATAG+TGG | 0.471836 | 1_3:+17336254 | Msa0107280:five_prime_UTR |
| CGTGGCTGCGGCAGAGGTCA+TGG | 0.476113 | 1_3:+17342163 | Msa0107280:CDS |
| GCCACACTTGGGGTTAGAAC+TGG | 0.480931 | 1_3:-17340133 | None:intergenic |
| GTGATGTTGCTTTGAGGTGT+AGG | 0.481867 | 1_3:+17338993 | Msa0107280:CDS |
| TTATACTGACCATTATCATA+TGG | 0.485193 | 1_3:-17340202 | None:intergenic |
| GGTTGAATAATGATACTTCT+GGG | 0.485200 | 1_3:+17336454 | Msa0107280:CDS |
| TGCTCCAAGAGTCGCTTCAC+GGG | 0.489073 | 1_3:-17340903 | None:intergenic |
| TGTTAGTAGCTTGCCTGAGA+TGG | 0.491391 | 1_3:+17336410 | Msa0107280:CDS |
| GAATTCCCTTGAGCTTCTAA+AGG | 0.492399 | 1_3:+17341325 | Msa0107280:intron |
| AACCCAAAATAATTTCCCAT+TGG | 0.495621 | 1_3:-17336435 | None:intergenic |
| ACTGGCTGCATACACTGCTT+TGG | 0.504226 | 1_3:-17340115 | None:intergenic |
| TACAAATAGTTGAAAAGTGA+TGG | 0.505840 | 1_3:+17336302 | Msa0107280:exon |
| TTGCTCCAAGAGTCGCTTCA+CGG | 0.512660 | 1_3:-17340904 | None:intergenic |
| CTGCGGCAGAGGTCATGGTC+AGG | 0.513147 | 1_3:+17342168 | Msa0107280:CDS |
| ACGAATACGTGGCCACACTT+GGG | 0.513683 | 1_3:-17340144 | None:intergenic |
| AAGTTAAGAAATTTGTGTGT+GGG | 0.520990 | 1_3:-17335847 | None:intergenic |
| TGCTTTGGTGATGAAACCAT+TGG | 0.521864 | 1_3:-17340100 | None:intergenic |
| TCGTCAATCGACACAGGAAG+TGG | 0.524585 | 1_3:-17343142 | None:intergenic |
| CCTGCATCATGCTTCAATCC+AGG | 0.531622 | 1_3:-17336579 | None:intergenic |
| CCTGGATTGAAGCATGATGC+AGG | 0.532478 | 1_3:+17336579 | Msa0107280:CDS |
| CAAAGATGAATTAGAAACTC+CGG | 0.534889 | 1_3:-17343958 | None:intergenic |
| TTGGTGAATTTGAATGTTTG+TGG | 0.536198 | 1_3:+17336244 | Msa0107280:five_prime_UTR |
| TTTAGGATCTAATTCCATCT+GGG | 0.536891 | 1_3:+17336130 | Msa0107280:intron |
| CTTGCCTGAGATGGTTCCAA+TGG | 0.539348 | 1_3:+17336419 | Msa0107280:CDS |
| GTGGACAAGTGTAGAGAGGT+TGG | 0.539479 | 1_3:+17343858 | Msa0107280:CDS |
| GAACAGCCAGACGCAATCCC+CGG | 0.541451 | 1_3:-17336537 | None:intergenic |
| TCAAGATTGCCTACTCAAAG+TGG | 0.557165 | 1_3:+17343839 | Msa0107280:CDS |
| ATCAAATGCCAAATGGGTAG+TGG | 0.558971 | 1_3:+17335786 | Msa0107280:five_prime_UTR |
| AACAGTATAAATTGGAGGAG+GGG | 0.559930 | 1_3:+17336628 | Msa0107280:CDS |
| ATCCACATACTCATCAAGAA+TGG | 0.561856 | 1_3:-17342962 | None:intergenic |
| TCTTCTTCAGGATAAGCCAA+TGG | 0.562507 | 1_3:+17340084 | Msa0107280:intron |
| TATGTAATATACTACTTGCA+AGG | 0.565240 | 1_3:-17343168 | None:intergenic |
| CGAATACGTGGCCACACTTG+GGG | 0.565432 | 1_3:-17340143 | None:intergenic |
| TGAACAGTATAAATTGGAGG+AGG | 0.569871 | 1_3:+17336626 | Msa0107280:CDS |
| AGCATTTGGCTCATTATACC+AGG | 0.571884 | 1_3:-17343118 | None:intergenic |
| TTGCCTGAGATGGTTCCAAT+GGG | 0.573001 | 1_3:+17336420 | Msa0107280:CDS |
| TGAGGATGTGAACGTGGCTG+CGG | 0.573134 | 1_3:+17342151 | Msa0107280:CDS |
| AGTGAGCCTTTAGAAGCTCA+AGG | 0.575461 | 1_3:-17341331 | None:intergenic |
| CGGCAGAGGTCATGGTCAGG+TGG | 0.575819 | 1_3:+17342171 | Msa0107280:CDS |
| AAAGTTAAGAAATTTGTGTG+TGG | 0.579945 | 1_3:-17335848 | None:intergenic |
| ATCCGTTGACTTCTGTCCAT+AGG | 0.588060 | 1_3:-17340178 | None:intergenic |
| TAATCTCTGTTCGCATAACA+TGG | 0.591770 | 1_3:-17341406 | None:intergenic |
| TATATTACATAATAAAACTC+AGG | 0.597323 | 1_3:+17343180 | Msa0107280:CDS |
| TGATGAACAGTATAAATTGG+AGG | 0.605084 | 1_3:+17336623 | Msa0107280:CDS |
| GAACAGTATAAATTGGAGGA+GGG | 0.605834 | 1_3:+17336627 | Msa0107280:CDS |
| TGCAGCATGAGAGCAATGCC+TGG | 0.606883 | 1_3:+17343100 | Msa0107280:intron |
| TCGTCTGTTATAAGTCAACC+GGG | 0.612438 | 1_3:+17336519 | Msa0107280:CDS |
| ATGCAGGTTTGGCTGCTGAG+TGG | 0.614045 | 1_3:+17336595 | Msa0107280:CDS |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.619616 | 1_3:+17338996 | Msa0107280:CDS |
| GAAGAGAAAGAAAACCCAGA+TGG | 0.619633 | 1_3:-17336144 | None:intergenic |
| AAAGAAGCTCAACAATAGGA+AGG | 0.622268 | 1_3:+17339412 | Msa0107280:CDS |
| TACACTTGTCCACTTTGAGT+AGG | 0.627153 | 1_3:-17343848 | None:intergenic |
| AGGTCCTCGTCAATCGACAC+AGG | 0.634291 | 1_3:-17343148 | None:intergenic |
| GCCAGTTCTAACCCCAAGTG+TGG | 0.637597 | 1_3:+17340132 | Msa0107280:CDS |
| ACTTCCTGTGTCGATTGACG+AGG | 0.637696 | 1_3:+17343144 | Msa0107280:CDS |
| CAAAGTGGACAAGTGTAGAG+AGG | 0.649492 | 1_3:+17343854 | Msa0107280:CDS |
| GTGAGCCTTTAGAAGCTCAA+GGG | 0.651658 | 1_3:-17341330 | None:intergenic |
| GCAATATCATTTGAATCTGG+TGG | 0.655444 | 1_3:+17336384 | Msa0107280:CDS |
| ATGTGATACACACGAATACG+TGG | 0.661179 | 1_3:-17340155 | None:intergenic |
| TGTGTGGGAAGAATAATTGG+TGG | 0.664229 | 1_3:-17335832 | None:intergenic |
| AAGGAAATCAGAAGAGCACA+TGG | 0.666279 | 1_3:+17339388 | Msa0107280:CDS |
| CTGGGATGATGATGTATTCG+GGG | 0.667463 | 1_3:+17336472 | Msa0107280:CDS |
| CTGATGAGCCAAGTATCATG+AGG | 0.671779 | 1_3:+17338930 | Msa0107280:CDS |
| GTGTGATATTGGTAATGATG+TGG | 0.674203 | 1_3:-17343931 | None:intergenic |
| TGTGCCGTGTCTGACTGAAG+AGG | 0.689673 | 1_3:-17342930 | None:intergenic |
| ATCCTATGGACAGAAGTCAA+CGG | 0.697598 | 1_3:+17340176 | Msa0107280:CDS |
| TCGACCTCTTCAGTCAGACA+CGG | 0.712664 | 1_3:+17342926 | Msa0107280:CDS |
| CGTCTGTTATAAGTCAACCG+GGG | 0.721896 | 1_3:+17336520 | Msa0107280:CDS |
| TTTAGCTGAGGATGTGAACG+TGG | 0.726042 | 1_3:+17342145 | Msa0107280:intron |
| GTATGACCATACTTGTGACA+TGG | 0.745610 | 1_3:-17342213 | None:intergenic |
| GGTGGTTATAGTGAGTGCAG+TGG | 0.761426 | 1_3:-17335814 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAAAATAATATT+AGG | - | chr1_3:17339064-17339083 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTACTTTTG+TGG | - | chr1_3:17335760-17335779 | None:intergenic | 10.0% |
| !!! | TTCAATAATATTTTTCTTTT+TGG | + | chr1_3:17337699-17337718 | Msa0107280:intron | 10.0% |
| !!! | TGATAAAAAACATTTTATTA+AGG | - | chr1_3:17341358-17341377 | None:intergenic | 10.0% |
| !!! | TGAATTAATTAACAATTTTT+AGG | + | chr1_3:17342720-17342739 | Msa0107280:intron | 10.0% |
| !! | TAAAATATTCAATTAATTAG+AGG | - | chr1_3:17343300-17343319 | None:intergenic | 10.0% |
| !! | TTTAGGTAAAAATTTGATAT+GGG | + | chr1_3:17335908-17335927 | Msa0107280:intron | 15.0% |
| !! | AACTATCACAAAAAAAAAAA+TGG | - | chr1_3:17336096-17336115 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_3:17337199-17337218 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_3:17337200-17337219 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_3:17337264-17337283 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_3:17337265-17337284 | None:intergenic | 15.0% |
| !! | ATAAGAAAATAATAACTTCA+TGG | - | chr1_3:17337938-17337957 | None:intergenic | 15.0% |
| !!! | ATTTCAAATTTTAAAGGTTA+AGG | - | chr1_3:17338538-17338557 | None:intergenic | 15.0% |
| !!! | AACCTTTAAAATTTGAAATT+TGG | + | chr1_3:17338539-17338558 | Msa0107280:intron | 15.0% |
| !!! | TTCCAAATTTCAAATTTTAA+AGG | - | chr1_3:17338544-17338563 | None:intergenic | 15.0% |
| !!! | TATTTTTATCCAAGATAAAA+AGG | + | chr1_3:17339099-17339118 | Msa0107280:intron | 15.0% |
| !! | GTTATTACATAAAATACTTT+AGG | + | chr1_3:17339867-17339886 | Msa0107280:intron | 15.0% |
| !! | TACTAAAAATAACAAATACT+AGG | + | chr1_3:17340322-17340341 | Msa0107280:intron | 15.0% |
| !! | TTGCTATAAATTAATTCTAA+AGG | + | chr1_3:17340528-17340547 | Msa0107280:intron | 15.0% |
| !!! | TATAAATTAATTCTAAAGGA+TGG | + | chr1_3:17340532-17340551 | Msa0107280:intron | 15.0% |
| !! | ATGAATAATCATACTTTATT+AGG | - | chr1_3:17340599-17340618 | None:intergenic | 15.0% |
| !! | TATATTACATAATAAAACTC+AGG | + | chr1_3:17343180-17343199 | Msa0107280:CDS | 15.0% |
| !! | TTTGTTACCAAAAATTCAAA+AGG | + | chr1_3:17335868-17335887 | Msa0107280:five_prime_UTR | 20.0% |
| !! | TTGTTACCAAAAATTCAAAA+GGG | + | chr1_3:17335869-17335888 | Msa0107280:five_prime_UTR | 20.0% |
| !! | CTTTAGGTAAAAATTTGATA+TGG | + | chr1_3:17335907-17335926 | Msa0107280:intron | 20.0% |
| !!! | TCAAATACTGATTTTCATTA+TGG | + | chr1_3:17336333-17336352 | Msa0107280:CDS | 20.0% |
| !! | ATATGAATTCATCTTTGAAT+TGG | + | chr1_3:17336358-17336377 | Msa0107280:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1_3:17337130-17337149 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1_3:17337166-17337185 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1_3:17337167-17337186 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_3:17337240-17337259 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1_3:17337263-17337282 | None:intergenic | 20.0% |
| !! | CTAAAAATTGTGTTTATAAG+TGG | - | chr1_3:17337538-17337557 | None:intergenic | 20.0% |
| !!! | CACTTATAAACACAATTTTT+AGG | + | chr1_3:17337536-17337555 | Msa0107280:intron | 20.0% |
| !! | AGAAACATGTTTAAGTAATA+TGG | + | chr1_3:17337668-17337687 | Msa0107280:intron | 20.0% |
| !!! | TTTTCTTTTTGGCAAAAAAA+AGG | + | chr1_3:17337710-17337729 | Msa0107280:intron | 20.0% |
| !! | TTCTTATCTTAAGTTCATAA+AGG | + | chr1_3:17337951-17337970 | Msa0107280:intron | 20.0% |
| !! | TTTGAAAAAACAAAACAAGA+TGG | - | chr1_3:17338194-17338213 | None:intergenic | 20.0% |
| !! | ATACTTTCAAAAGTCTAATT+AGG | + | chr1_3:17338297-17338316 | Msa0107280:intron | 20.0% |
| !! | TACTTTCAAAAGTCTAATTA+GGG | + | chr1_3:17338298-17338317 | Msa0107280:intron | 20.0% |
| !! | TAAGAAAGTAATATCACATT+TGG | - | chr1_3:17338417-17338436 | None:intergenic | 20.0% |
| !! | ATATATAACACATTTGATGT+TGG | - | chr1_3:17338443-17338462 | None:intergenic | 20.0% |
| !! | TTGAAATTTGGAAGTTATTA+TGG | + | chr1_3:17338551-17338570 | Msa0107280:intron | 20.0% |
| !! | TGAAATTTGGAAGTTATTAT+GGG | + | chr1_3:17338552-17338571 | Msa0107280:intron | 20.0% |
| !! | GCAATAGAAAATATAAAAAG+AGG | - | chr1_3:17338860-17338879 | None:intergenic | 20.0% |
| !! | AAAAAAAGGAAAGAAAACAA+GGG | - | chr1_3:17338887-17338906 | None:intergenic | 20.0% |
| !! | TGGAACATTAACTTTAAATA+CGG | - | chr1_3:17339135-17339154 | None:intergenic | 20.0% |
| !! | ATATCAATTTGATCATGATA+TGG | - | chr1_3:17339155-17339174 | None:intergenic | 20.0% |
| !!! | AGTATTTTTCACTTTTGAAT+GGG | - | chr1_3:17339226-17339245 | None:intergenic | 20.0% |
| !!! | TAGTATTTTTCACTTTTGAA+TGG | - | chr1_3:17339227-17339246 | None:intergenic | 20.0% |
| !! | TTATACTTAATGCAATATGT+TGG | - | chr1_3:17339286-17339305 | None:intergenic | 20.0% |
| !! | ATCATAAAACATCAATCAAA+TGG | + | chr1_3:17339669-17339688 | Msa0107280:intron | 20.0% |
| !! | TCATAAAACATCAATCAAAT+GGG | + | chr1_3:17339670-17339689 | Msa0107280:intron | 20.0% |
| !! | ACTTTATAGCTATTGTTATA+CGG | - | chr1_3:17339815-17339834 | None:intergenic | 20.0% |
| !!! | TTCTAAATTTTTTCTTCTTC+AGG | + | chr1_3:17340072-17340091 | Msa0107280:intron | 20.0% |
| !! | TAAAAATAACAAATACTAGG+TGG | + | chr1_3:17340325-17340344 | Msa0107280:intron | 20.0% |
| !!! | AAACAGTAAAACATAGTTTT+GGG | - | chr1_3:17340510-17340529 | None:intergenic | 20.0% |
| !!! | ACTTCCTATCTATTTTTTAA+GGG | - | chr1_3:17341055-17341074 | None:intergenic | 20.0% |
| !! | TACTCCAAAATTTAATTCTA+TGG | + | chr1_3:17341105-17341124 | Msa0107280:intron | 20.0% |
| !! | ACTCCAAAATTTAATTCTAT+GGG | + | chr1_3:17341106-17341125 | Msa0107280:intron | 20.0% |
| !!! | AATGTTTTTTATCATGTCAA+AGG | + | chr1_3:17341364-17341383 | Msa0107280:CDS | 20.0% |
| !!! | AATATCCATATCTATTTCTT+CGG | + | chr1_3:17341949-17341968 | Msa0107280:intron | 20.0% |
| !! | AAAGGATTTACATAATTCAA+AGG | - | chr1_3:17342783-17342802 | None:intergenic | 20.0% |
| !!! | AAACAAGTTGAATACTTTAA+GGG | + | chr1_3:17343344-17343363 | Msa0107280:intron | 20.0% |
| !! | TCTTGTAATTCTTAATTTCA+TGG | + | chr1_3:17343657-17343676 | Msa0107280:intron | 20.0% |
| !!! | AAAAAGTATCAAATGCCAAA+TGG | + | chr1_3:17335779-17335798 | Msa0107280:five_prime_UTR | 25.0% |
| !!! | AAAAGTATCAAATGCCAAAT+GGG | + | chr1_3:17335780-17335799 | Msa0107280:five_prime_UTR | 25.0% |
| ! | AAGTTAAGAAATTTGTGTGT+GGG | - | chr1_3:17335850-17335869 | None:intergenic | 25.0% |
| ! | AAAGTTAAGAAATTTGTGTG+TGG | - | chr1_3:17335851-17335870 | None:intergenic | 25.0% |
| !! | GTTCTCTTTTCTTTATCTTT+AGG | + | chr1_3:17335891-17335910 | Msa0107280:five_prime_UTR | 25.0% |
| !! | GTTTGTTCTTTTGTGTATTT+AGG | + | chr1_3:17336113-17336132 | Msa0107280:intron | 25.0% |
| !!! | TTTGAATGGTTTTGATGAAT+TGG | + | chr1_3:17336173-17336192 | Msa0107280:five_prime_UTR | 25.0% |
| ! | TACAAATAGTTGAAAAGTGA+TGG | + | chr1_3:17336302-17336321 | Msa0107280:exon | 25.0% |
| !! | TTCCAATGGGAAATTATTTT+GGG | + | chr1_3:17336433-17336452 | Msa0107280:CDS | 25.0% |
| !! | TGTTGATGAACAGTATAAAT+TGG | + | chr1_3:17336620-17336639 | Msa0107280:CDS | 25.0% |
| ! | TCAAGTAAGTAGTTTATCTT+TGG | + | chr1_3:17336655-17336674 | Msa0107280:intron | 25.0% |
| ! | TGACTGAATTTGAATATCAT+AGG | - | chr1_3:17336709-17336728 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1_3:17337131-17337150 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1_3:17337241-17337260 | None:intergenic | 25.0% |
| ! | ATAACTCAATCCTACATAAT+CGG | + | chr1_3:17337490-17337509 | Msa0107280:intron | 25.0% |
| ! | AACAGGTACAATAAAAACAT+AGG | - | chr1_3:17338087-17338106 | None:intergenic | 25.0% |
| ! | AAGCTGAAAAAATACAAAAC+AGG | - | chr1_3:17338104-17338123 | None:intergenic | 25.0% |
| ! | ATTGAAGAGAATGTTATAGA+CGG | - | chr1_3:17338392-17338411 | None:intergenic | 25.0% |
| ! | GAAATTTGGAAGTTATTATG+GGG | + | chr1_3:17338553-17338572 | Msa0107280:intron | 25.0% |
| ! | TAGAATTGCTTGAATCAAAT+TGG | + | chr1_3:17338780-17338799 | Msa0107280:intron | 25.0% |
| ! | CAAAAAAAGGAAAGAAAACA+AGG | - | chr1_3:17338888-17338907 | None:intergenic | 25.0% |
| !! | CATTCTTATCCTTTTTATCT+TGG | - | chr1_3:17339111-17339130 | None:intergenic | 25.0% |
| !!! | GTATTTTTCACTTTTGAATG+GGG | - | chr1_3:17339225-17339244 | None:intergenic | 25.0% |
| !! | TCATACTTGATCTTTTGAAT+TGG | + | chr1_3:17339505-17339524 | Msa0107280:intron | 25.0% |
| ! | CTGAATCAATTAATGTCATT+AGG | + | chr1_3:17340023-17340042 | Msa0107280:intron | 25.0% |
| ! | TTATACTGACCATTATCATA+TGG | - | chr1_3:17340205-17340224 | None:intergenic | 25.0% |
| !! | TGTATTTTTCTTTGCATAGA+TGG | + | chr1_3:17340237-17340256 | Msa0107280:intron | 25.0% |
| !! | AAAATTGACAACACTGTTTT+GGG | - | chr1_3:17340360-17340379 | None:intergenic | 25.0% |
| !! | AATTTTGTTAATGCGAATTG+CGG | + | chr1_3:17340374-17340393 | Msa0107280:intron | 25.0% |
| !! | CAAACAGTAAAACATAGTTT+TGG | - | chr1_3:17340511-17340530 | None:intergenic | 25.0% |
| !! | TTTATTAGGCTTTTATGACT+GGG | - | chr1_3:17340585-17340604 | None:intergenic | 25.0% |
| ! | TTAAAGTTTAATCTGCTAAC+TGG | + | chr1_3:17340631-17340650 | Msa0107280:intron | 25.0% |
| ! | AGTCAAATTCAGAATTATTG+AGG | - | chr1_3:17340660-17340679 | None:intergenic | 25.0% |
| ! | TTCCAATTTATCTACTTTCA+AGG | + | chr1_3:17340953-17340972 | Msa0107280:CDS | 25.0% |
| ! | GTTTGTAAGATCATAAATAC+TGG | + | chr1_3:17341009-17341028 | Msa0107280:intron | 25.0% |
| ! | TAAGCCCTTAAAAAATAGAT+AGG | + | chr1_3:17341048-17341067 | Msa0107280:intron | 25.0% |
| !!! | GACTTCCTATCTATTTTTTA+AGG | - | chr1_3:17341056-17341075 | None:intergenic | 25.0% |
| !! | TGTCCCATAGAATTAAATTT+TGG | - | chr1_3:17341112-17341131 | None:intergenic | 25.0% |
| ! | AATTAATTGATGTGTTCTGT+AGG | + | chr1_3:17341160-17341179 | Msa0107280:intron | 25.0% |
| !!! | GCTTAGCTTGTTTATATATT+CGG | + | chr1_3:17341251-17341270 | Msa0107280:intron | 25.0% |
| !! | TTTTTATCATGTCAAAGGAA+TGG | + | chr1_3:17341369-17341388 | Msa0107280:CDS | 25.0% |
| ! | GGACAAACATACATATTTAA+AGG | - | chr1_3:17341542-17341561 | None:intergenic | 25.0% |
| ! | GTACAAGTTGCATTATTATT+TGG | + | chr1_3:17341749-17341768 | Msa0107280:intron | 25.0% |
| ! | AAGTTGCATTATTATTTGGT+AGG | + | chr1_3:17341753-17341772 | Msa0107280:intron | 25.0% |
| ! | TTCATTAACAATGTCAAGTT+AGG | - | chr1_3:17341802-17341821 | None:intergenic | 25.0% |
| ! | GAAGCTAGGAAAATATAATT+TGG | - | chr1_3:17341851-17341870 | None:intergenic | 25.0% |
| ! | AGTATAATGTATAATGCATG+AGG | - | chr1_3:17341889-17341908 | None:intergenic | 25.0% |
| ! | GCATTATACATTATACTTAC+TGG | + | chr1_3:17341892-17341911 | Msa0107280:intron | 25.0% |
| !! | ATATCCATATCTATTTCTTC+GGG | + | chr1_3:17341950-17341969 | Msa0107280:intron | 25.0% |
| ! | TAACTAGATAAATTTGATGG+TGG | - | chr1_3:17342278-17342297 | None:intergenic | 25.0% |
| ! | GAGTAACTAGATAAATTTGA+TGG | - | chr1_3:17342281-17342300 | None:intergenic | 25.0% |
| ! | ATCTTAAATCACACTTCATT+CGG | - | chr1_3:17342583-17342602 | None:intergenic | 25.0% |
| ! | AATACAAAGTTTACAGAGAA+AGG | - | chr1_3:17342801-17342820 | None:intergenic | 25.0% |
| ! | CAGATAATGAATAGTATCAT+AGG | - | chr1_3:17342831-17342850 | None:intergenic | 25.0% |
| !!! | TGAATTAGTTTTTGCCTTTT+TGG | + | chr1_3:17342849-17342868 | Msa0107280:intron | 25.0% |
| ! | CTTAATCAATGAACTTCAAA+AGG | - | chr1_3:17343076-17343095 | None:intergenic | 25.0% |
| ! | TATGTAATATACTACTTGCA+AGG | - | chr1_3:17343171-17343190 | None:intergenic | 25.0% |
| ! | TGATTGTATAACTTCAACAA+AGG | - | chr1_3:17343249-17343268 | None:intergenic | 25.0% |
| ! | AGCATATTGCACAAAATAAA+TGG | - | chr1_3:17343277-17343296 | None:intergenic | 25.0% |
| !!! | AACTTGTTTCTATTTGTATG+TGG | - | chr1_3:17343333-17343352 | None:intergenic | 25.0% |
| !! | GAAACAAGTTGAATACTTTA+AGG | + | chr1_3:17343343-17343362 | Msa0107280:intron | 25.0% |
| ! | ATCTATGAATCTTAGTAAGA+TGG | - | chr1_3:17343486-17343505 | None:intergenic | 25.0% |
| ! | CAAAACTGAGAAATAAAGTA+TGG | - | chr1_3:17343712-17343731 | None:intergenic | 25.0% |
| !!! | CATACTTTATTTCTCAGTTT+TGG | + | chr1_3:17343710-17343729 | Msa0107280:intron | 25.0% |
| ! | AGAGAACCCTTTTGAATTTT+TGG | - | chr1_3:17335878-17335897 | None:intergenic | 30.0% |
| !! | TGAATCTGTGATGTTTTTGA+GGG | + | chr1_3:17336039-17336058 | Msa0107280:intron | 30.0% |
| ! | ATTTAGGATCTAATTCCATC+TGG | + | chr1_3:17336129-17336148 | Msa0107280:intron | 30.0% |
| ! | TTTAGGATCTAATTCCATCT+GGG | + | chr1_3:17336130-17336149 | Msa0107280:intron | 30.0% |
| TTCTCTTCAAGGAATTTGAA+TGG | + | chr1_3:17336159-17336178 | Msa0107280:five_prime_UTR | 30.0% | |
| GAAGTGAAGTTATAGTTTCT+TGG | + | chr1_3:17336217-17336236 | Msa0107280:five_prime_UTR | 30.0% | |
| TTGGTGAATTTGAATGTTTG+TGG | + | chr1_3:17336244-17336263 | Msa0107280:five_prime_UTR | 30.0% | |
| TGAATGTTTGTGGTATATAG+TGG | + | chr1_3:17336254-17336273 | Msa0107280:five_prime_UTR | 30.0% | |
| CATGCAATATCATTTGAATC+TGG | + | chr1_3:17336381-17336400 | Msa0107280:CDS | 30.0% | |
| ! | GTTCCAATGGGAAATTATTT+TGG | + | chr1_3:17336432-17336451 | Msa0107280:CDS | 30.0% |
| AACCCAAAATAATTTCCCAT+TGG | - | chr1_3:17336438-17336457 | None:intergenic | 30.0% | |
| GGTTGAATAATGATACTTCT+GGG | + | chr1_3:17336454-17336473 | Msa0107280:CDS | 30.0% | |
| TGATGAACAGTATAAATTGG+AGG | + | chr1_3:17336623-17336642 | Msa0107280:CDS | 30.0% | |
| AGTTTATCTTTGGTTGTTGT+TGG | + | chr1_3:17336665-17336684 | Msa0107280:intron | 30.0% | |
| TACAACAACTCTTAGAATCT+GGG | + | chr1_3:17337014-17337033 | Msa0107280:intron | 30.0% | |
| ! | GGAGTATTTATATGTATGGT+GGG | - | chr1_3:17337087-17337106 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1_3:17337152-17337171 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1_3:17337153-17337172 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1_3:17337256-17337275 | None:intergenic | 30.0% | |
| ! | TCATTTAAGACAAAGCTTTC+AGG | - | chr1_3:17337584-17337603 | None:intergenic | 30.0% |
| ! | GAAAGCTTTGTCTTAAATGA+AGG | + | chr1_3:17337584-17337603 | Msa0107280:intron | 30.0% |
| !! | CTTTTTGGCAAAAAAAAGGT+AGG | + | chr1_3:17337714-17337733 | Msa0107280:intron | 30.0% |
| !! | TTGGTTTTTGAGGACTATTA+AGG | - | chr1_3:17337865-17337884 | None:intergenic | 30.0% |
| !!! | CGAATTCTATTTGGTTTTTG+AGG | - | chr1_3:17337875-17337894 | None:intergenic | 30.0% |
| CCATGTTTACGAATTCTATT+TGG | - | chr1_3:17337884-17337903 | None:intergenic | 30.0% | |
| CCAAATAGAATTCGTAAACA+TGG | + | chr1_3:17337881-17337900 | Msa0107280:intron | 30.0% | |
| TCATATCTCAAAGCAAGTTT+AGG | + | chr1_3:17337911-17337930 | Msa0107280:intron | 30.0% | |
| CATATCTCAAAGCAAGTTTA+GGG | + | chr1_3:17337912-17337931 | Msa0107280:intron | 30.0% | |
| !!! | TGTATTTTTTCAGCTTCTTG+AGG | + | chr1_3:17338108-17338127 | Msa0107280:intron | 30.0% |
| !!! | CTTTTTGCTAGGAGTATTTT+AGG | - | chr1_3:17338515-17338534 | None:intergenic | 30.0% |
| !! | ATGTTGGTAGCATAATTATC+TGG | - | chr1_3:17339270-17339289 | None:intergenic | 30.0% |
| TTTCCTATATGCATACTTTG+AGG | - | chr1_3:17339333-17339352 | None:intergenic | 30.0% | |
| ! | ATAGGAAGGTACATGAAATT+AGG | + | chr1_3:17339426-17339445 | Msa0107280:intron | 30.0% |
| CGTCAAACATTGATGTAAAA+TGG | - | chr1_3:17339556-17339575 | None:intergenic | 30.0% | |
| TAAAACATCAATCAAATGGG+TGG | + | chr1_3:17339673-17339692 | Msa0107280:intron | 30.0% | |
| ! | TCAAGGTATCTTCTTAAAGA+AGG | + | chr1_3:17339709-17339728 | Msa0107280:intron | 30.0% |
| AAAACTACCAATTCATGTCT+AGG | + | chr1_3:17339928-17339947 | Msa0107280:intron | 30.0% | |
| TGATTCAGTGTTATCTAAAG+AGG | - | chr1_3:17340011-17340030 | None:intergenic | 30.0% | |
| ! | CAAAATTGACAACACTGTTT+TGG | - | chr1_3:17340361-17340380 | None:intergenic | 30.0% |
| ! | CTTTATTAGGCTTTTATGAC+TGG | - | chr1_3:17340586-17340605 | None:intergenic | 30.0% |
| CATATGAAGTGATAAGAGTT+AGG | - | chr1_3:17340768-17340787 | None:intergenic | 30.0% | |
| TAAGACACACAACAAAAACT+AGG | - | chr1_3:17340813-17340832 | None:intergenic | 30.0% | |
| AATTCCTGACAGTAAAAACA+AGG | - | chr1_3:17340877-17340896 | None:intergenic | 30.0% | |
| CACCTTGAAAGTAGATAAAT+TGG | - | chr1_3:17340958-17340977 | None:intergenic | 30.0% | |
| ATGATCTTACAAACAAAGAC+TGG | - | chr1_3:17341003-17341022 | None:intergenic | 30.0% | |
| TAATTATCAGCAAAAACACC+TGG | - | chr1_3:17341145-17341164 | None:intergenic | 30.0% | |
| CTACTACATTGATAAGTGTA+AGG | - | chr1_3:17341229-17341248 | None:intergenic | 30.0% | |
| ! | AGCTTGTTTATATATTCGGT+AGG | + | chr1_3:17341255-17341274 | Msa0107280:intron | 30.0% |
| ATATATTCGGTAGGATAGAT+AGG | + | chr1_3:17341264-17341283 | Msa0107280:intron | 30.0% | |
| !! | AAGGCTCTAGATATTATGTT+AGG | - | chr1_3:17341497-17341516 | None:intergenic | 30.0% |
| !! | TTTTTGCTGTCAAGTTTAGA+AGG | - | chr1_3:17341698-17341717 | None:intergenic | 30.0% |
| !! | TTTTACTTCCAATTGGTGAT+AGG | - | chr1_3:17341826-17341845 | None:intergenic | 30.0% |
| !!! | TTTGGTGTTTTACTTCCAAT+TGG | - | chr1_3:17341833-17341852 | None:intergenic | 30.0% |
| AAACAATTAGCACAAAGTCA+TGG | + | chr1_3:17342085-17342104 | Msa0107280:intron | 30.0% | |
| AGAAACATTAAGCAATGAGT+AGG | - | chr1_3:17342119-17342138 | None:intergenic | 30.0% | |
| TCTTAAATCACACTTCATTC+GGG | - | chr1_3:17342582-17342601 | None:intergenic | 30.0% | |
| AGTTACGATTATCTTGTCTA+AGG | - | chr1_3:17342637-17342656 | None:intergenic | 30.0% | |
| AGAAATGTGATAACATAGCT+AGG | + | chr1_3:17342662-17342681 | Msa0107280:intron | 30.0% | |
| GAAATGTGATAACATAGCTA+GGG | + | chr1_3:17342663-17342682 | Msa0107280:intron | 30.0% | |
| TTTCTTTCATAAACAGTTGC+AGG | + | chr1_3:17342897-17342916 | Msa0107280:intron | 30.0% | |
| ! | AAGTTGAATACTTTAAGGGA+AGG | + | chr1_3:17343348-17343367 | Msa0107280:intron | 30.0% |
| ! | AATGTCTTTTCAAACTGAAC+AGG | - | chr1_3:17343414-17343433 | None:intergenic | 30.0% |
| TAAAGTATGGTAAATGTGAG+AGG | - | chr1_3:17343699-17343718 | None:intergenic | 30.0% | |
| ATGTATTACCAATTCAAGCT+AGG | + | chr1_3:17343801-17343820 | Msa0107280:intron | 30.0% | |
| AGAAATTTCCTAGCTTGAAT+TGG | - | chr1_3:17343812-17343831 | None:intergenic | 30.0% | |
| TTACCAATATCACACTATTC+CGG | + | chr1_3:17343939-17343958 | Msa0107280:CDS | 30.0% | |
| CAAAGATGAATTAGAAACTC+CGG | - | chr1_3:17343961-17343980 | None:intergenic | 30.0% | |
| TTGTGTGTGGGAAGAATAAT+TGG | - | chr1_3:17335838-17335857 | None:intergenic | 35.0% | |
| !! | CTGAATCTGTGATGTTTTTG+AGG | + | chr1_3:17336038-17336057 | Msa0107280:intron | 35.0% |
| GTTATAGTTTCTTGGCAAGT+TGG | + | chr1_3:17336225-17336244 | Msa0107280:five_prime_UTR | 35.0% | |
| GCAATATCATTTGAATCTGG+TGG | + | chr1_3:17336384-17336403 | Msa0107280:CDS | 35.0% | |
| GGGTTGAATAATGATACTTC+TGG | + | chr1_3:17336453-17336472 | Msa0107280:CDS | 35.0% | |
| !! | TTCTGGGATGATGATGTATT+CGG | + | chr1_3:17336470-17336489 | Msa0107280:CDS | 35.0% |
| TTCGTCTGTTATAAGTCAAC+CGG | + | chr1_3:17336518-17336537 | Msa0107280:CDS | 35.0% | |
| TGAACAGTATAAATTGGAGG+AGG | + | chr1_3:17336626-17336645 | Msa0107280:CDS | 35.0% | |
| GAACAGTATAAATTGGAGGA+GGG | + | chr1_3:17336627-17336646 | Msa0107280:CDS | 35.0% | |
| AACAGTATAAATTGGAGGAG+GGG | + | chr1_3:17336628-17336647 | Msa0107280:CDS | 35.0% | |
| !! | GTTGTTGTTGGTCTTGTTAT+TGG | + | chr1_3:17336677-17336696 | Msa0107280:intron | 35.0% |
| TTGGGTCGGTAAAAAATTGA+AGG | + | chr1_3:17336805-17336824 | Msa0107280:intron | 35.0% | |
| CTACAACAACTCTTAGAATC+TGG | + | chr1_3:17337013-17337032 | Msa0107280:intron | 35.0% | |
| !! | GGGAGTATTTATATGTATGG+TGG | - | chr1_3:17337088-17337107 | None:intergenic | 35.0% |
| !! | GGAGGGAGTATTTATATGTA+TGG | - | chr1_3:17337091-17337110 | None:intergenic | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1_3:17337117-17337136 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_3:17337286-17337305 | Msa0107280:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr1_3:17337299-17337318 | Msa0107280:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr1_3:17337300-17337319 | Msa0107280:intron | 35.0% | |
| ! | GACGAAGGTAGTACATTTTT+AGG | + | chr1_3:17337322-17337341 | Msa0107280:intron | 35.0% |
| ! | GAGTCTATCTAAGATCAGTT+TGG | - | chr1_3:17337442-17337461 | None:intergenic | 35.0% |
| TCTGACATCACCTTAGAATT+TGG | + | chr1_3:17337460-17337479 | Msa0107280:intron | 35.0% | |
| CTGACATCACCTTAGAATTT+GGG | + | chr1_3:17337461-17337480 | Msa0107280:intron | 35.0% | |
| TATGCTCAACCCAAATTCTA+AGG | - | chr1_3:17337473-17337492 | None:intergenic | 35.0% | |
| TTTGGCAAAAAAAAGGTAGG+AGG | + | chr1_3:17337717-17337736 | Msa0107280:intron | 35.0% | |
| AAAAGGTAGGAGGAATTGTT+TGG | + | chr1_3:17337727-17337746 | Msa0107280:intron | 35.0% | |
| ACAAAACTCTAGATGCAACT+AGG | + | chr1_3:17337779-17337798 | Msa0107280:intron | 35.0% | |
| !! | TTCTGGTGTTGGTTATTTCA+AGG | + | chr1_3:17338004-17338023 | Msa0107280:intron | 35.0% |
| ATTAGAAGAAGTGAAGCACA+TGG | - | chr1_3:17338143-17338162 | None:intergenic | 35.0% | |
| AAAGATGGAGGACAAACAAA+AGG | - | chr1_3:17338343-17338362 | None:intergenic | 35.0% | |
| ! | TTGTCCTCCATCTTTGTTTA+TGG | + | chr1_3:17338348-17338367 | Msa0107280:intron | 35.0% |
| GTGTTATATATCCCAGATAG+CGG | + | chr1_3:17338452-17338471 | Msa0107280:intron | 35.0% | |
| ! | AAAGGTTAAGGCTTTTTGCT+AGG | - | chr1_3:17338526-17338545 | None:intergenic | 35.0% |
| TTGGAAGTTATTATGGGGTT+AGG | + | chr1_3:17338558-17338577 | Msa0107280:intron | 35.0% | |
| AGTTATTATGGGGTTAGGTA+TGG | + | chr1_3:17338563-17338582 | Msa0107280:intron | 35.0% | |
| TTGTCAATAGCATGCAATAG+CGG | - | chr1_3:17338720-17338739 | None:intergenic | 35.0% | |
| ACAACGCTTTGACATTTGTA+TGG | + | chr1_3:17338736-17338755 | Msa0107280:intron | 35.0% | |
| TTGACATACCTCATGATACT+TGG | - | chr1_3:17338941-17338960 | None:intergenic | 35.0% | |
| AAAAGTGGTAAGGTAAGGTA+AGG | - | chr1_3:17339202-17339221 | None:intergenic | 35.0% | |
| TGGTAAAGAAGCTCAACAAT+AGG | + | chr1_3:17339408-17339427 | Msa0107280:CDS | 35.0% | |
| AAAGAAGCTCAACAATAGGA+AGG | + | chr1_3:17339412-17339431 | Msa0107280:CDS | 35.0% | |
| TATGTGTTTCTTGAAGAGTC+TGG | + | chr1_3:17339458-17339477 | Msa0107280:intron | 35.0% | |
| CAACGGATACCATATGATAA+TGG | + | chr1_3:17340193-17340212 | Msa0107280:CDS | 35.0% | |
| TAACAAATACTAGGTGGAAC+TGG | + | chr1_3:17340331-17340350 | Msa0107280:intron | 35.0% | |
| ATATCCGTCAAAAATTGGCA+TGG | - | chr1_3:17340421-17340440 | None:intergenic | 35.0% | |
| !! | CCAATTTTTGACGGATATGA+CGG | + | chr1_3:17340423-17340442 | Msa0107280:intron | 35.0% |
| TCATATGCTCTTACACTATC+TGG | + | chr1_3:17340781-17340800 | Msa0107280:intron | 35.0% | |
| CATATGCTCTTACACTATCT+GGG | + | chr1_3:17340782-17340801 | Msa0107280:intron | 35.0% | |
| CACACAACAAAAACTAGGAA+AGG | - | chr1_3:17340808-17340827 | None:intergenic | 35.0% | |
| !!! | TTCTCCTTGTTTTTACTGTC+AGG | + | chr1_3:17340870-17340889 | Msa0107280:intron | 35.0% |
| ACAAAGACTGGTAAAAGTGA+AGG | - | chr1_3:17340991-17341010 | None:intergenic | 35.0% | |
| TCTGTAGGAGACAAAATTGT+TGG | + | chr1_3:17341175-17341194 | Msa0107280:intron | 35.0% | |
| TAATCTCTGTTCGCATAACA+TGG | - | chr1_3:17341409-17341428 | None:intergenic | 35.0% | |
| !!! | GAGATTACTGATTTTCTGTC+CGG | + | chr1_3:17341422-17341441 | Msa0107280:CDS | 35.0% |
| GAGAAAGTTAGGGAAAGTAA+AGG | - | chr1_3:17341469-17341488 | None:intergenic | 35.0% | |
| TTAGGACTGAGAGAAAGTTA+GGG | - | chr1_3:17341479-17341498 | None:intergenic | 35.0% | |
| ! | TAGAGCCTTTTCAGTTTGAT+CGG | + | chr1_3:17341508-17341527 | Msa0107280:intron | 35.0% |
| !! | CATGATCTCCAATCACTTTT+AGG | + | chr1_3:17341569-17341588 | Msa0107280:intron | 35.0% |
| !!! | AGAAGAAGGACTTTTGGAAT+CGG | - | chr1_3:17341600-17341619 | None:intergenic | 35.0% |
| ATCGAGAGAAGTAGAATTTG+CGG | - | chr1_3:17341651-17341670 | None:intergenic | 35.0% | |
| ATTGCATGAATGAAGTTCAC+TGG | - | chr1_3:17341674-17341693 | None:intergenic | 35.0% | |
| AATGCAACTTGTACACTTTG+AGG | - | chr1_3:17341743-17341762 | None:intergenic | 35.0% | |
| TAGGTTCATAGATTCAAGCA+AGG | + | chr1_3:17341772-17341791 | Msa0107280:intron | 35.0% | |
| TAATGAAGCCTATCACCAAT+TGG | + | chr1_3:17341815-17341834 | Msa0107280:intron | 35.0% | |
| TAAGCCCGAAGAAATAGATA+TGG | - | chr1_3:17341957-17341976 | None:intergenic | 35.0% | |
| GTTTCTTCTCAATTTAGCTG+AGG | + | chr1_3:17342133-17342152 | Msa0107280:intron | 35.0% | |
| !! | CTAGATAAATTTGATGGTGG+TGG | - | chr1_3:17342275-17342294 | None:intergenic | 35.0% |
| !!! | GACTTGAGCATTACGTTTTT+TGG | - | chr1_3:17342478-17342497 | None:intergenic | 35.0% |
| TTAAATCACACTTCATTCGG+GGG | - | chr1_3:17342580-17342599 | None:intergenic | 35.0% | |
| CTTAAATCACACTTCATTCG+GGG | - | chr1_3:17342581-17342600 | None:intergenic | 35.0% | |
| ! | TATCTTGTCTAAGGTTCAGA+TGG | - | chr1_3:17342628-17342647 | None:intergenic | 35.0% |
| TACCATTCTTGATGAGTATG+TGG | + | chr1_3:17342960-17342979 | Msa0107280:intron | 35.0% | |
| ATCCACATACTCATCAAGAA+TGG | - | chr1_3:17342965-17342984 | None:intergenic | 35.0% | |
| ATAAAACTCAGGTAAGTTGC+TGG | + | chr1_3:17343191-17343210 | Msa0107280:intron | 35.0% | |
| GGAAATGAAGTGAATCAAAG+TGG | - | chr1_3:17343465-17343484 | None:intergenic | 35.0% | |
| TGTTGTGAGACTATTTGGAA+GGG | - | chr1_3:17343557-17343576 | None:intergenic | 35.0% | |
| TTGTTGTGAGACTATTTGGA+AGG | - | chr1_3:17343558-17343577 | None:intergenic | 35.0% | |
| ACAACAAGTGCTTATGTTAG+TGG | + | chr1_3:17343571-17343590 | Msa0107280:intron | 35.0% | |
| !! | GTGTGATATTGGTAATGATG+TGG | - | chr1_3:17343934-17343953 | None:intergenic | 35.0% |
| ATCAAATGCCAAATGGGTAG+TGG | + | chr1_3:17335786-17335805 | Msa0107280:five_prime_UTR | 40.0% | |
| TGTGTGGGAAGAATAATTGG+TGG | - | chr1_3:17335835-17335854 | None:intergenic | 40.0% | |
| GAAGAGAAAGAAAACCCAGA+TGG | - | chr1_3:17336147-17336166 | None:intergenic | 40.0% | |
| ! | CTGGGTTTTCTTTCTCTTCA+AGG | + | chr1_3:17336148-17336167 | Msa0107280:five_prime_UTR | 40.0% |
| ! | TCTGGGATGATGATGTATTC+GGG | + | chr1_3:17336471-17336490 | Msa0107280:CDS | 40.0% |
| ATGATGTATTCGGGGAATTC+AGG | + | chr1_3:17336480-17336499 | Msa0107280:CDS | 40.0% | |
| TCGTCTGTTATAAGTCAACC+GGG | + | chr1_3:17336519-17336538 | Msa0107280:CDS | 40.0% | |
| ATTGAAGCATGATGCAGGTT+TGG | + | chr1_3:17336584-17336603 | Msa0107280:CDS | 40.0% | |
| TCAGTCACTTGACATGACAT+TGG | + | chr1_3:17336722-17336741 | Msa0107280:intron | 40.0% | |
| ATTGTAACCACATGTGTCGT+TGG | + | chr1_3:17336786-17336805 | Msa0107280:intron | 40.0% | |
| ! | TTGTAACCACATGTGTCGTT+GGG | + | chr1_3:17336787-17336806 | Msa0107280:intron | 40.0% |
| ATTGCTGCTGCATAGTAACT+TGG | + | chr1_3:17336899-17336918 | Msa0107280:intron | 40.0% | |
| GCTGCATAGTAACTTGGTTT+CGG | + | chr1_3:17336905-17336924 | Msa0107280:intron | 40.0% | |
| ACAACTCTTAGAATCTGGGT+TGG | + | chr1_3:17337018-17337037 | Msa0107280:intron | 40.0% | |
| CCTTACAAACTGGTATCGTA+GGG | - | chr1_3:17337055-17337074 | None:intergenic | 40.0% | |
| TCCTTACAAACTGGTATCGT+AGG | - | chr1_3:17337056-17337075 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1_3:17337116-17337135 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr1_3:17337302-17337321 | None:intergenic | 40.0% | |
| AAAATGTACTACCTTCGTCC+CGG | - | chr1_3:17337321-17337340 | None:intergenic | 40.0% | |
| !! | TCCTACATAATCGGCTTGTA+AGG | + | chr1_3:17337499-17337518 | Msa0107280:intron | 40.0% |
| ACCTTACAAGCCGATTATGT+AGG | - | chr1_3:17337503-17337522 | None:intergenic | 40.0% | |
| GCCAAAATGGGTGAGATATA+GGG | - | chr1_3:17337562-17337581 | None:intergenic | 40.0% | |
| CAAAGCTTTCAGGCCAAAAT+GGG | - | chr1_3:17337574-17337593 | None:intergenic | 40.0% | |
| ACAAAGCTTTCAGGCCAAAA+TGG | - | chr1_3:17337575-17337594 | None:intergenic | 40.0% | |
| ACTGTAGTTAGACAACACTG+TGG | - | chr1_3:17337610-17337629 | None:intergenic | 40.0% | |
| TTATGCTCTTTGCGTCTTTC+TGG | + | chr1_3:17337987-17338006 | Msa0107280:intron | 40.0% | |
| GGTTCCATAAACAAAGATGG+AGG | - | chr1_3:17338355-17338374 | None:intergenic | 40.0% | |
| TGCGGTTCCATAAACAAAGA+TGG | - | chr1_3:17338358-17338377 | None:intergenic | 40.0% | |
| ! | TAGACGGAAAAGCACATATG+CGG | - | chr1_3:17338376-17338395 | None:intergenic | 40.0% |
| GACTCCAAGCACATTATAGA+GGG | + | chr1_3:17338486-17338505 | Msa0107280:intron | 40.0% | |
| GAATCCCTCTATAATGTGCT+TGG | - | chr1_3:17338493-17338512 | None:intergenic | 40.0% | |
| ! | ATGCCAAGCTTTTTGTCACA+CGG | + | chr1_3:17338805-17338824 | Msa0107280:intron | 40.0% |
| AAACCGTGTGACAAAAAGCT+TGG | - | chr1_3:17338811-17338830 | None:intergenic | 40.0% | |
| CCATGAAAGAGGGCAAAAAA+AGG | - | chr1_3:17338901-17338920 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTTGCCCTCTTTCA+TGG | + | chr1_3:17338898-17338917 | Msa0107280:intron | 40.0% |
| TTGAATGGGGAAAAGTGGTA+AGG | - | chr1_3:17339212-17339231 | None:intergenic | 40.0% | |
| ! | CACTTTTGAATGGGGAAAAG+TGG | - | chr1_3:17339217-17339236 | None:intergenic | 40.0% |
| GCACCTCAAAGTATGCATAT+AGG | + | chr1_3:17339327-17339346 | Msa0107280:intron | 40.0% | |
| ! | AAGGAAATCAGAAGAGCACA+TGG | + | chr1_3:17339388-17339407 | Msa0107280:CDS | 40.0% |
| GGTACATGAAATTAGGAAGC+TGG | + | chr1_3:17339433-17339452 | Msa0107280:intron | 40.0% | |
| GTGGAGAAAAATGCAGTTCA+AGG | + | chr1_3:17339692-17339711 | Msa0107280:intron | 40.0% | |
| CTGACATCCTAGACATGAAT+TGG | - | chr1_3:17339938-17339957 | None:intergenic | 40.0% | |
| CTAAAGAGGAGTCATGTTCA+TGG | - | chr1_3:17339997-17340016 | None:intergenic | 40.0% | |
| TCTTCTTCAGGATAAGCCAA+TGG | + | chr1_3:17340084-17340103 | Msa0107280:intron | 40.0% | |
| !! | TGCTTTGGTGATGAAACCAT+TGG | - | chr1_3:17340103-17340122 | None:intergenic | 40.0% |
| ATGTGATACACACGAATACG+TGG | - | chr1_3:17340158-17340177 | None:intergenic | 40.0% | |
| TTCGTGTGTATCACATCCTA+TGG | + | chr1_3:17340162-17340181 | Msa0107280:CDS | 40.0% | |
| ATCCTATGGACAGAAGTCAA+CGG | + | chr1_3:17340176-17340195 | Msa0107280:CDS | 40.0% | |
| TTTGTTAATGCGAATTGCGG+TGG | + | chr1_3:17340377-17340396 | Msa0107280:intron | 40.0% | |
| ! | ACTGCCATGCCAATTTTTGA+CGG | + | chr1_3:17340414-17340433 | Msa0107280:intron | 40.0% |
| CCGTCATATCCGTCAAAAAT+TGG | - | chr1_3:17340426-17340445 | None:intergenic | 40.0% | |
| ! | TTTTGGGCCAATGTTATCGA+TGG | - | chr1_3:17340494-17340513 | None:intergenic | 40.0% |
| TCTAAAGGATGGAGAAAGCA+AGG | + | chr1_3:17340543-17340562 | Msa0107280:intron | 40.0% | |
| ! | TTGACCAGTTGCAAGTCTTT+TGG | + | chr1_3:17340685-17340704 | Msa0107280:intron | 40.0% |
| ! | TGACCAGTTGCAAGTCTTTT+GGG | + | chr1_3:17340686-17340705 | Msa0107280:intron | 40.0% |
| ATCAGCAAAAACACCTGGAT+AGG | - | chr1_3:17341140-17341159 | None:intergenic | 40.0% | |
| GAATTCCCTTGAGCTTCTAA+AGG | + | chr1_3:17341325-17341344 | Msa0107280:intron | 40.0% | |
| ! | AGTGCAATGAAGTACTTGAC+CGG | - | chr1_3:17341444-17341463 | None:intergenic | 40.0% |
| GTTAGGACTGAGAGAAAGTT+AGG | - | chr1_3:17341480-17341499 | None:intergenic | 40.0% | |
| CAGAACCGATCAAACTGAAA+AGG | - | chr1_3:17341516-17341535 | None:intergenic | 40.0% | |
| GATTGGAGATCATGTACTTG+AGG | - | chr1_3:17341563-17341582 | None:intergenic | 40.0% | |
| GATTCCAAAAGTCCTTCTTC+TGG | + | chr1_3:17341599-17341618 | Msa0107280:intron | 40.0% | |
| ! | GAATCCAGAAGAAGGACTTT+TGG | - | chr1_3:17341606-17341625 | None:intergenic | 40.0% |
| GATGATCAGAATCCAGAAGA+AGG | - | chr1_3:17341614-17341633 | None:intergenic | 40.0% | |
| TGTCAACCATGTCACAAGTA+TGG | + | chr1_3:17342207-17342226 | Msa0107280:intron | 40.0% | |
| GTATGACCATACTTGTGACA+TGG | - | chr1_3:17342216-17342235 | None:intergenic | 40.0% | |
| CATACTGCTTACGTTGTCAT+TGG | + | chr1_3:17342231-17342250 | Msa0107280:intron | 40.0% | |
| !! | GATAAATTTGATGGTGGTGG+AGG | - | chr1_3:17342272-17342291 | None:intergenic | 40.0% |
| ! | TGCTCAGTTAGCTTATAACC+AGG | + | chr1_3:17342376-17342395 | Msa0107280:intron | 40.0% |
| GATCCAATACTGACAGTTAG+AGG | - | chr1_3:17342419-17342438 | None:intergenic | 40.0% | |
| ! | TCAGTATTGGATCCAGATCT+GGG | + | chr1_3:17342426-17342445 | Msa0107280:intron | 40.0% |
| ATGTTGGAACTTTGGCTACA+AGG | - | chr1_3:17342515-17342534 | None:intergenic | 40.0% | |
| GAGTGCAAATGTTGGAACTT+TGG | - | chr1_3:17342523-17342542 | None:intergenic | 40.0% | |
| TTGATCAGAAAAAGGCCAAG+TGG | - | chr1_3:17342555-17342574 | None:intergenic | 40.0% | |
| TAAATCACACTTCATTCGGG+GGG | - | chr1_3:17342579-17342598 | None:intergenic | 40.0% | |
| TAGCTAGGGATACACAGTAA+AGG | + | chr1_3:17342677-17342696 | Msa0107280:intron | 40.0% | |
| ! | AGCATTTGGCTCATTATACC+AGG | - | chr1_3:17343121-17343140 | None:intergenic | 40.0% |
| !! | GCACTTGTTGTGAGACTATT+TGG | - | chr1_3:17343562-17343581 | None:intergenic | 40.0% |
| CTTTGAGTAGGCAATCTTGA+TGG | - | chr1_3:17343839-17343858 | None:intergenic | 40.0% | |
| TCAAGATTGCCTACTCAAAG+TGG | + | chr1_3:17343839-17343858 | Msa0107280:CDS | 40.0% | |
| TACACTTGTCCACTTTGAGT+AGG | - | chr1_3:17343851-17343870 | None:intergenic | 40.0% | |
| ! | TGTAGAGAGGTTGGCATTTT+TGG | + | chr1_3:17343867-17343886 | Msa0107280:CDS | 40.0% |
| ! | GGTGTGGAAGTCAATTGTTT+TGG | + | chr1_3:17343888-17343907 | Msa0107280:CDS | 40.0% |
| !!! | TCAATTGTTTTGGTGCTGCA+TGG | + | chr1_3:17343898-17343917 | Msa0107280:CDS | 40.0% |
| !!! | CAATTGTTTTGGTGCTGCAT+GGG | + | chr1_3:17343899-17343918 | Msa0107280:CDS | 40.0% |
| ACTCCGGAATAGTGTGATAT+TGG | - | chr1_3:17343945-17343964 | None:intergenic | 40.0% | |
| ! | TGTTAGTAGCTTGCCTGAGA+TGG | + | chr1_3:17336410-17336429 | Msa0107280:CDS | 45.0% |
| TTGCCTGAGATGGTTCCAAT+GGG | + | chr1_3:17336420-17336439 | Msa0107280:CDS | 45.0% | |
| TTTCCCATTGGAACCATCTC+AGG | - | chr1_3:17336426-17336445 | None:intergenic | 45.0% | |
| ! | CTGGGATGATGATGTATTCG+GGG | + | chr1_3:17336472-17336491 | Msa0107280:CDS | 45.0% |
| ! | GGAATTCAGGCGTTGTTAGT+AGG | + | chr1_3:17336493-17336512 | Msa0107280:CDS | 45.0% |
| CGTCTGTTATAAGTCAACCG+GGG | + | chr1_3:17336520-17336539 | Msa0107280:CDS | 45.0% | |
| !! | CTTCTTGTTGATTCTGTGCC+TGG | + | chr1_3:17336561-17336580 | Msa0107280:CDS | 45.0% |
| ! | ATTGAAGGCATGTCTGACAC+CGG | + | chr1_3:17336820-17336839 | Msa0107280:intron | 45.0% |
| ! | CTTCACATTGAAGGTGTGTC+CGG | - | chr1_3:17336842-17336861 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCACATTGA+AGG | - | chr1_3:17336851-17336870 | None:intergenic | 45.0% |
| TGGTATCGTAGGGTTGAGTT+AGG | - | chr1_3:17337045-17337064 | None:intergenic | 45.0% | |
| CCCTACGATACCAGTTTGTA+AGG | + | chr1_3:17337052-17337071 | Msa0107280:intron | 45.0% | |
| CGATACCAGTTTGTAAGGAG+AGG | + | chr1_3:17337057-17337076 | Msa0107280:intron | 45.0% | |
| GTAGTCCTCTCCTTACAAAC+TGG | - | chr1_3:17337065-17337084 | None:intergenic | 45.0% | |
| TATAAATACTCCCTCCGTCC+CGG | + | chr1_3:17337095-17337114 | Msa0107280:intron | 45.0% | |
| CACTCTAGATGTCCAGACTT+GGG | - | chr1_3:17337392-17337411 | None:intergenic | 45.0% | |
| ACACTCTAGATGTCCAGACT+TGG | - | chr1_3:17337393-17337412 | None:intergenic | 45.0% | |
| TAACCCGCTATCAGCTTACT+CGG | - | chr1_3:17337419-17337438 | None:intergenic | 45.0% | |
| !! | CATAATCGGCTTGTAAGGTG+AGG | + | chr1_3:17337504-17337523 | Msa0107280:intron | 45.0% |
| ! | GCCCTATATCTCACCCATTT+TGG | + | chr1_3:17337558-17337577 | Msa0107280:intron | 45.0% |
| GGCCAAAATGGGTGAGATAT+AGG | - | chr1_3:17337563-17337582 | None:intergenic | 45.0% | |
| ! | TCTTTGCGTCTTTCTGGTGT+TGG | + | chr1_3:17337993-17338012 | Msa0107280:intron | 45.0% |
| GGAGAACTAGAAATGCAGCA+AGG | - | chr1_3:17338066-17338085 | None:intergenic | 45.0% | |
| CGACTCCAAGCACATTATAG+AGG | + | chr1_3:17338485-17338504 | Msa0107280:intron | 45.0% | |
| CCACTATAGCGCCAAAATAG+TGG | - | chr1_3:17338609-17338628 | None:intergenic | 45.0% | |
| !!! | CCACTATTTTGGCGCTATAG+TGG | + | chr1_3:17338606-17338625 | Msa0107280:intron | 45.0% |
| TATAGTGGCTGCTAATGCTG+TGG | + | chr1_3:17338621-17338640 | Msa0107280:intron | 45.0% | |
| AGCAGAGCAGTTTCACATAG+TGG | - | chr1_3:17338647-17338666 | None:intergenic | 45.0% | |
| GCATGTCTAGCCATGAAAGA+GGG | - | chr1_3:17338911-17338930 | None:intergenic | 45.0% | |
| AGCATGTCTAGCCATGAAAG+AGG | - | chr1_3:17338912-17338931 | None:intergenic | 45.0% | |
| CTGATGAGCCAAGTATCATG+AGG | + | chr1_3:17338930-17338949 | Msa0107280:CDS | 45.0% | |
| !! | CTGTTCGTGATGTTGCTTTG+AGG | + | chr1_3:17338987-17339006 | Msa0107280:CDS | 45.0% |
| !! | GTGATGTTGCTTTGAGGTGT+AGG | + | chr1_3:17338993-17339012 | Msa0107280:CDS | 45.0% |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | + | chr1_3:17338996-17339015 | Msa0107280:CDS | 45.0% |
| TGGGGAAAAGTGGTAAGGTA+AGG | - | chr1_3:17339207-17339226 | None:intergenic | 45.0% | |
| CCTTCGCTTTCTCTGCAAAA+TGG | - | chr1_3:17339372-17339391 | None:intergenic | 45.0% | |
| ! | CCATTTTGCAGAGAAAGCGA+AGG | + | chr1_3:17339369-17339388 | Msa0107280:intron | 45.0% |
| !! | ATCCGTTGACTTCTGTCCAT+AGG | - | chr1_3:17340181-17340200 | None:intergenic | 45.0% |
| CTACCCAAAAGACTTGCAAC+TGG | - | chr1_3:17340692-17340711 | None:intergenic | 45.0% | |
| !! | CAGTTGCAAGTCTTTTGGGT+AGG | + | chr1_3:17340690-17340709 | Msa0107280:intron | 45.0% |
| ATGGGACATTGTACCTATCC+AGG | + | chr1_3:17341124-17341143 | Msa0107280:intron | 45.0% | |
| ! | GTGAGCCTTTAGAAGCTCAA+GGG | - | chr1_3:17341333-17341352 | None:intergenic | 45.0% |
| ! | AGTGAGCCTTTAGAAGCTCA+AGG | - | chr1_3:17341334-17341353 | None:intergenic | 45.0% |
| AATGCATGAGGCTGCATACA+GGG | - | chr1_3:17341877-17341896 | None:intergenic | 45.0% | |
| TAATGCATGAGGCTGCATAC+AGG | - | chr1_3:17341878-17341897 | None:intergenic | 45.0% | |
| TCATGGCAACTTGTCAAGTG+TGG | + | chr1_3:17341925-17341944 | Msa0107280:intron | 45.0% | |
| CATGGCAACTTGTCAAGTGT+GGG | + | chr1_3:17341926-17341945 | Msa0107280:intron | 45.0% | |
| TTTAGCTGAGGATGTGAACG+TGG | + | chr1_3:17342145-17342164 | Msa0107280:intron | 45.0% | |
| ! | CAGGGTGCTTCGTAAATGTT+TGG | - | chr1_3:17342308-17342327 | None:intergenic | 45.0% |
| ! | CAAACATTTACGAAGCACCC+TGG | + | chr1_3:17342306-17342325 | Msa0107280:intron | 45.0% |
| GCATCCTATACAAGAGACCA+GGG | - | chr1_3:17342326-17342345 | None:intergenic | 45.0% | |
| AGCATCCTATACAAGAGACC+AGG | - | chr1_3:17342327-17342346 | None:intergenic | 45.0% | |
| TACTGACAGTTAGAGGACCT+TGG | - | chr1_3:17342412-17342431 | None:intergenic | 45.0% | |
| GGTCCTCTAACTGTCAGTAT+TGG | + | chr1_3:17342413-17342432 | Msa0107280:intron | 45.0% | |
| ! | GTCAGTATTGGATCCAGATC+TGG | + | chr1_3:17342425-17342444 | Msa0107280:intron | 45.0% |
| TGATATGAAGCTCCCAGATC+TGG | - | chr1_3:17342441-17342460 | None:intergenic | 45.0% | |
| CTACAAGGCCATTGCTACTA+GGG | - | chr1_3:17342500-17342519 | None:intergenic | 45.0% | |
| GCATCGTAGAGTGCAAATGT+TGG | - | chr1_3:17342531-17342550 | None:intergenic | 45.0% | |
| !! | ACACAGGAAGTGGAAGCATT+TGG | - | chr1_3:17343135-17343154 | None:intergenic | 45.0% |
| CAAAGTGGACAAGTGTAGAG+AGG | + | chr1_3:17343854-17343873 | Msa0107280:CDS | 45.0% | |
| !!! | AGAGGTTGGCATTTTTGGTG+TGG | + | chr1_3:17343872-17343891 | Msa0107280:CDS | 45.0% |
| !!! | TTTATTTGTTTTTTTATATA+TGG | + | chr1_3:17336001-17336020 | Msa0107280:intron | 5.0% |
| GGTGGTTATAGTGAGTGCAG+TGG | - | chr1_3:17335817-17335836 | None:intergenic | 50.0% | |
| CTTGCCTGAGATGGTTCCAA+TGG | + | chr1_3:17336419-17336438 | Msa0107280:CDS | 50.0% | |
| CCTGCATCATGCTTCAATCC+AGG | - | chr1_3:17336582-17336601 | None:intergenic | 50.0% | |
| CCTGGATTGAAGCATGATGC+AGG | + | chr1_3:17336579-17336598 | Msa0107280:CDS | 50.0% | |
| ! | AACCACATGTGTCGTTGGGT+CGG | + | chr1_3:17336791-17336810 | Msa0107280:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1_3:17337112-17337131 | None:intergenic | 50.0% | |
| GGTCAATTATACCGGGACGA+AGG | + | chr1_3:17337307-17337326 | Msa0107280:intron | 50.0% | |
| ACTCTTCTCAAGCCCAAGTC+TGG | + | chr1_3:17337377-17337396 | Msa0107280:intron | 50.0% | |
| TGACCCGAGTAAGCTGATAG+CGG | + | chr1_3:17337412-17337431 | Msa0107280:intron | 50.0% | |
| AACCCGCTATCAGCTTACTC+GGG | - | chr1_3:17337418-17337437 | None:intergenic | 50.0% | |
| !! | ATCCCAGATAGCGGAAGAAG+TGG | + | chr1_3:17338461-17338480 | Msa0107280:intron | 50.0% |
| GACCACTTCTTCCGCTATCT+GGG | - | chr1_3:17338466-17338485 | None:intergenic | 50.0% | |
| ! | AGCTGCGGCATCCACTATTT+TGG | + | chr1_3:17338595-17338614 | Msa0107280:intron | 50.0% |
| TGCTACAGCATGTCCTGTAG+AGG | + | chr1_3:17338663-17338682 | Msa0107280:intron | 50.0% | |
| ACTGGCTGCATACACTGCTT+TGG | - | chr1_3:17340118-17340137 | None:intergenic | 50.0% | |
| ACGAATACGTGGCCACACTT+GGG | - | chr1_3:17340147-17340166 | None:intergenic | 50.0% | |
| ACGGATATGACGGCGTCATA+TGG | + | chr1_3:17340433-17340452 | Msa0107280:intron | 50.0% | |
| GATATGACGGCGTCATATGG+CGG | + | chr1_3:17340436-17340455 | Msa0107280:intron | 50.0% | |
| !! | CCAATGTTATCGATGGCGGA+TGG | - | chr1_3:17340487-17340506 | None:intergenic | 50.0% |
| CCATCCGCCATCGATAACAT+TGG | + | chr1_3:17340484-17340503 | Msa0107280:intron | 50.0% | |
| TGGGCCAATGTTATCGATGG+CGG | - | chr1_3:17340491-17340510 | None:intergenic | 50.0% | |
| !! | GCAAGTCTTTTGGGTAGGCT+AGG | + | chr1_3:17340695-17340714 | Msa0107280:intron | 50.0% |
| TTGCTCCAAGAGTCGCTTCA+CGG | - | chr1_3:17340907-17340926 | None:intergenic | 50.0% | |
| CGGCGTAGCCTAAAAGTGAT+TGG | - | chr1_3:17341580-17341599 | None:intergenic | 50.0% | |
| AACTACCTGCTGTGTCGAAG+TGG | + | chr1_3:17341716-17341735 | Msa0107280:intron | 50.0% | |
| TGCATACAGGGAGAGAAGCT+AGG | - | chr1_3:17341865-17341884 | None:intergenic | 50.0% | |
| TTACTGGATGCACTCGCTCA+TGG | + | chr1_3:17341908-17341927 | Msa0107280:intron | 50.0% | |
| AGCACCCTGGTCTCTTGTAT+AGG | + | chr1_3:17342319-17342338 | Msa0107280:intron | 50.0% | |
| TGACAGTTAGAGGACCTTGG+AGG | - | chr1_3:17342409-17342428 | None:intergenic | 50.0% | |
| GCTCAAGTCCCTAGTAGCAA+TGG | + | chr1_3:17342489-17342508 | Msa0107280:intron | 50.0% | |
| GCTACAAGGCCATTGCTACT+AGG | - | chr1_3:17342501-17342520 | None:intergenic | 50.0% | |
| CGGGGGGATTGATCAGAAAA+AGG | - | chr1_3:17342563-17342582 | None:intergenic | 50.0% | |
| CGCAAGCTTAGAGGCCAAAA+AGG | - | chr1_3:17342866-17342885 | None:intergenic | 50.0% | |
| GATCGCTATCGCAAGCTTAG+AGG | - | chr1_3:17342875-17342894 | None:intergenic | 50.0% | |
| TCGACCTCTTCAGTCAGACA+CGG | + | chr1_3:17342926-17342945 | Msa0107280:CDS | 50.0% | |
| TCGTCAATCGACACAGGAAG+TGG | - | chr1_3:17343145-17343164 | None:intergenic | 50.0% | |
| !! | ACTTCCTGTGTCGATTGACG+AGG | + | chr1_3:17343144-17343163 | Msa0107280:CDS | 50.0% |
| GTGGACAAGTGTAGAGAGGT+TGG | + | chr1_3:17343858-17343877 | Msa0107280:CDS | 50.0% | |
| !! | TTTGGTGCTGCATGGGATTG+AGG | + | chr1_3:17343906-17343925 | Msa0107280:CDS | 50.0% |
| ! | TGGCAGTGCCACTACCCATT+TGG | - | chr1_3:17335797-17335816 | None:intergenic | 55.0% |
| ATGCAGGTTTGGCTGCTGAG+TGG | + | chr1_3:17336595-17336614 | Msa0107280:CDS | 55.0% | |
| TACCGACCCAACGACACATG+TGG | - | chr1_3:17336796-17336815 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1_3:17337108-17337127 | None:intergenic | 55.0% | |
| GACCCGAGTAAGCTGATAGC+GGG | + | chr1_3:17337413-17337432 | Msa0107280:intron | 55.0% | |
| CGACCACTTCTTCCGCTATC+TGG | - | chr1_3:17338467-17338486 | None:intergenic | 55.0% | |
| GTATGGCACTGTAGCAGCTG+CGG | + | chr1_3:17338580-17338599 | Msa0107280:intron | 55.0% | |
| AGCATGTCCTGTAGAGGCCA+GGG | + | chr1_3:17338669-17338688 | Msa0107280:intron | 55.0% | |
| ! | ATAGCGGAGCTATAGCGCTG+TGG | - | chr1_3:17338704-17338723 | None:intergenic | 55.0% |
| ! | GCCAGTTCTAACCCCAAGTG+TGG | + | chr1_3:17340132-17340151 | Msa0107280:CDS | 55.0% |
| GCCACACTTGGGGTTAGAAC+TGG | - | chr1_3:17340136-17340155 | None:intergenic | 55.0% | |
| CGAATACGTGGCCACACTTG+GGG | - | chr1_3:17340146-17340165 | None:intergenic | 55.0% | |
| CACGAATACGTGGCCACACT+TGG | - | chr1_3:17340148-17340167 | None:intergenic | 55.0% | |
| !!! | GGCGTCATATGGCGGACTTT+TGG | + | chr1_3:17340444-17340463 | Msa0107280:intron | 55.0% |
| !!! | GGACTTTTGGCTTTCCGCCA+TGG | + | chr1_3:17340457-17340476 | Msa0107280:intron | 55.0% |
| TGATCCCGTGAAGCGACTCT+TGG | + | chr1_3:17340899-17340918 | Msa0107280:CDS | 55.0% | |
| TGCTCCAAGAGTCGCTTCAC+GGG | - | chr1_3:17340906-17340925 | None:intergenic | 55.0% | |
| TGAGGATGTGAACGTGGCTG+CGG | + | chr1_3:17342151-17342170 | Msa0107280:CDS | 55.0% | |
| AACCAGGTCTTGCTCCTCCA+AGG | + | chr1_3:17342392-17342411 | Msa0107280:intron | 55.0% | |
| GCACTCTACGATGCTCCACT+TGG | + | chr1_3:17342537-17342556 | Msa0107280:intron | 55.0% | |
| TGTGCCGTGTCTGACTGAAG+AGG | - | chr1_3:17342933-17342952 | None:intergenic | 55.0% | |
| TGCAGCATGAGAGCAATGCC+TGG | + | chr1_3:17343100-17343119 | Msa0107280:intron | 55.0% | |
| AGGTCCTCGTCAATCGACAC+AGG | - | chr1_3:17343151-17343170 | None:intergenic | 55.0% | |
| AGTCAACCGGGGATTGCGTC+TGG | + | chr1_3:17336531-17336550 | Msa0107280:CDS | 60.0% | |
| GAACAGCCAGACGCAATCCC+CGG | - | chr1_3:17336540-17336559 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1_3:17337109-17337128 | None:intergenic | 60.0% | |
| CAGCATGTCCTGTAGAGGCC+AGG | + | chr1_3:17338668-17338687 | Msa0107280:intron | 60.0% | |
| GCATGTCCTGTAGAGGCCAG+GGG | + | chr1_3:17338670-17338689 | Msa0107280:intron | 60.0% | |
| TTGGGTAGGCTAGGCCCCTA+AGG | + | chr1_3:17340704-17340723 | Msa0107280:intron | 60.0% | |
| GAGGACCACTTCGACACAGC+AGG | - | chr1_3:17341724-17341743 | None:intergenic | 60.0% | |
| GACCTTGGAGGAGCAAGACC+TGG | - | chr1_3:17342397-17342416 | None:intergenic | 60.0% | |
| ! | TGGCGGATGGCAGACCATGG+CGG | - | chr1_3:17340474-17340493 | None:intergenic | 65.0% |
| !! | CGATGGCGGATGGCAGACCA+TGG | - | chr1_3:17340477-17340496 | None:intergenic | 65.0% |
| TGTGAACGTGGCTGCGGCAG+AGG | + | chr1_3:17342157-17342176 | Msa0107280:CDS | 65.0% | |
| CTGCGGCAGAGGTCATGGTC+AGG | + | chr1_3:17342168-17342187 | Msa0107280:CDS | 65.0% | |
| CGGCAGAGGTCATGGTCAGG+TGG | + | chr1_3:17342171-17342190 | Msa0107280:CDS | 65.0% | |
| GAGCGACCCCTGGCCTCTAC+AGG | - | chr1_3:17338679-17338698 | None:intergenic | 70.0% | |
| CGCTGTGGTTGAGCGACCCC+TGG | - | chr1_3:17338689-17338708 | None:intergenic | 70.0% | |
| CGTGGCTGCGGCAGAGGTCA+TGG | + | chr1_3:17342163-17342182 | Msa0107280:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17335731 | 17343981 | 17335731 | ID=Msa0107280;Name=Msa0107280 |
| chr1_3 | mRNA | 17335731 | 17343981 | 17335731 | ID=Msa0107280-mRNA-1;Parent=Msa0107280;Name=Msa0107280-mRNA-1;_AED=0.23;_eAED=0.24;_QI=368|0.6|0.72|0.81|0.9|0.81|11|0|401 |
| chr1_3 | exon | 17335731 | 17335912 | 17335731 | ID=Msa0107280-mRNA-1:exon:6568;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17336135 | 17336658 | 17336135 | ID=Msa0107280-mRNA-1:exon:6569;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17338925 | 17339024 | 17338925 | ID=Msa0107280-mRNA-1:exon:6570;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17339380 | 17339433 | 17339380 | ID=Msa0107280-mRNA-1:exon:6571;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17340094 | 17340214 | 17340094 | ID=Msa0107280-mRNA-1:exon:6572;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17340892 | 17340974 | 17340892 | ID=Msa0107280-mRNA-1:exon:6573;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17341326 | 17341443 | 17341326 | ID=Msa0107280-mRNA-1:exon:6574;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17342150 | 17342223 | 17342150 | ID=Msa0107280-mRNA-1:exon:6575;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17342913 | 17342974 | 17342913 | ID=Msa0107280-mRNA-1:exon:6576;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17343105 | 17343201 | 17343105 | ID=Msa0107280-mRNA-1:exon:6577;Parent=Msa0107280-mRNA-1 |
| chr1_3 | exon | 17343823 | 17343981 | 17343823 | ID=Msa0107280-mRNA-1:exon:6578;Parent=Msa0107280-mRNA-1 |
| chr1_3 | five_prime_UTR | 17335731 | 17335912 | 17335731 | ID=Msa0107280-mRNA-1:five_prime_utr;Parent=Msa0107280-mRNA-1 |
| chr1_3 | five_prime_UTR | 17336135 | 17336320 | 17336135 | ID=Msa0107280-mRNA-1:five_prime_utr;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17336321 | 17336658 | 17336321 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17338925 | 17339024 | 17338925 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17339380 | 17339433 | 17339380 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17340094 | 17340214 | 17340094 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17340892 | 17340974 | 17340892 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17341326 | 17341443 | 17341326 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17342150 | 17342223 | 17342150 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17342913 | 17342974 | 17342913 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17343105 | 17343201 | 17343105 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| chr1_3 | CDS | 17343823 | 17343981 | 17343823 | ID=Msa0107280-mRNA-1:cds;Parent=Msa0107280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
