Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107250 | XP_024635730.1 | 70.223 | 403 | 55 | 5 | 1 | 401 | 1 | 340 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107250 | A0A072VRS0 | 95.000 | 60 | 2 | 1 | 290 | 349 | 227 | 285 | 4.96e-25 | 114 |
| Msa0107250 | A0A072VRS0 | 95.690 | 232 | 10 | 0 | 1 | 232 | 1 | 232 | 3.73e-164 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa0107250 | 0.810970 | 8.842473e-51 | -8.615850e-47 |
| Msa0030380 | Msa0107250 | 0.835446 | 1.670420e-56 | -8.615850e-47 |
| Msa0032370 | Msa0107250 | 0.816759 | 4.686064e-52 | -8.615850e-47 |
| Msa0046100 | Msa0107250 | 0.804216 | 2.402972e-49 | -8.615850e-47 |
| Msa0084650 | Msa0107250 | 0.838908 | 2.174320e-57 | -8.615850e-47 |
| Msa0095380 | Msa0107250 | 0.844351 | 7.976478e-59 | -8.615850e-47 |
| Msa0107250 | Msa0107280 | 0.980396 | 4.009170e-150 | -8.615850e-47 |
| Msa0107250 | Msa0110970 | 0.806682 | 7.306884e-50 | -8.615850e-47 |
| Msa0107250 | Msa0143080 | 0.801856 | 7.391031e-49 | -8.615850e-47 |
| Msa0107250 | Msa0172350 | 0.820953 | 5.223363e-53 | -8.615850e-47 |
| Msa0107250 | Msa0173740 | 0.837339 | 5.509876e-57 | -8.615850e-47 |
| Msa0107250 | Msa0173820 | 0.840707 | 7.393692e-58 | -8.615850e-47 |
| Msa0107250 | Msa0173830 | 0.825208 | 5.311796e-54 | -8.615850e-47 |
| Msa0107250 | Msa0182680 | 0.801826 | 7.495388e-49 | -8.615850e-47 |
| Msa0107250 | Msa0183620 | 0.806786 | 6.944196e-50 | -8.615850e-47 |
| Msa0107250 | Msa0186890 | 0.812260 | 4.636581e-51 | -8.615850e-47 |
| Msa0107250 | Msa0188890 | 0.802915 | 4.472712e-49 | -8.615850e-47 |
| Msa0107250 | Msa0193120 | 0.818427 | 1.971361e-52 | -8.615850e-47 |
| Msa0107250 | Msa0194480 | 0.807794 | 4.247067e-50 | -8.615850e-47 |
| Msa0107250 | Msa0197890 | 0.805145 | 1.537302e-49 | -8.615850e-47 |
| Msa0107250 | Msa0231380 | 0.800130 | 1.664824e-48 | -8.615850e-47 |
| Msa0107250 | Msa0231880 | 0.815850 | 7.485358e-52 | -8.615850e-47 |
| Msa0107250 | Msa0236980 | 0.809081 | 2.256326e-50 | -8.615850e-47 |
| Msa0107250 | Msa0241640 | 0.814750 | 1.314014e-51 | -8.615850e-47 |
| Msa0107250 | Msa0242680 | 0.801038 | 1.086999e-48 | -8.615850e-47 |
| Msa0107250 | Msa0262310 | 0.811720 | 6.080546e-51 | -8.615850e-47 |
| Msa0107250 | Msa0264570 | 0.815676 | 8.183851e-52 | -8.615850e-47 |
| Msa0107250 | Msa0267760 | 0.820302 | 7.370839e-53 | -8.615850e-47 |
| Msa0107250 | Msa0270660 | 0.801278 | 9.711387e-49 | -8.615850e-47 |
| Msa0107250 | Msa0279790 | 0.832584 | 8.694922e-56 | -8.615850e-47 |
| Msa0107250 | Msa0280490 | 0.804368 | 2.233735e-49 | -8.615850e-47 |
| Msa0107250 | Msa0280900 | 0.817691 | 2.892038e-52 | -8.615850e-47 |
| Msa0107250 | Msa0298700 | 0.809844 | 1.547429e-50 | -8.615850e-47 |
| Msa0107250 | Msa0304920 | 0.813768 | 2.165891e-51 | -8.615850e-47 |
| Msa0107250 | Msa0320100 | 0.818678 | 1.729016e-52 | -8.615850e-47 |
| Msa0107250 | Msa0321860 | 0.800252 | 1.572684e-48 | -8.615850e-47 |
| Msa0107250 | Msa0347360 | 0.802516 | 5.405714e-49 | -8.615850e-47 |
| Msa0107250 | Msa0358170 | 0.813863 | 2.063236e-51 | -8.615850e-47 |
| Msa0107250 | Msa0372660 | 0.813060 | 3.098057e-51 | -8.615850e-47 |
| Msa0107250 | Msa0372670 | 0.804438 | 2.160427e-49 | -8.615850e-47 |
| Msa0107250 | Msa0376040 | 0.818876 | 1.559184e-52 | -8.615850e-47 |
| Msa0107250 | Msa0376510 | 0.811360 | 7.279290e-51 | -8.615850e-47 |
| Msa0107250 | Msa0380040 | 0.834134 | 3.571778e-56 | -8.615850e-47 |
| Msa0107250 | Msa0398950 | 0.808844 | 2.536848e-50 | -8.615850e-47 |
| Msa0107250 | Msa0414950 | -0.800960 | 1.127684e-48 | -8.615850e-47 |
| Msa0107250 | Msa0419820 | 0.803247 | 3.818692e-49 | -8.615850e-47 |
| Msa0107250 | Msa0425050 | 0.803520 | 3.352877e-49 | -8.615850e-47 |
| Msa0107250 | Msa0427200 | 0.813374 | 2.643394e-51 | -8.615850e-47 |
| Msa0107250 | Msa0429290 | 0.825802 | 3.843350e-54 | -8.615850e-47 |
| Msa0107250 | Msa0429950 | 0.808886 | 2.484519e-50 | -8.615850e-47 |
| Msa0107250 | Msa0436050 | 0.812884 | 3.387245e-51 | -8.615850e-47 |
| Msa0107250 | Msa0465790 | 0.800886 | 1.167553e-48 | -8.615850e-47 |
| Msa0107250 | Msa0475580 | 0.820319 | 7.302554e-53 | -8.615850e-47 |
| Msa0107250 | Msa0480320 | 0.804759 | 1.851670e-49 | -8.615850e-47 |
| Msa0107250 | Msa0487910 | 0.805145 | 1.537219e-49 | -8.615850e-47 |
| Msa0107250 | Msa0508590 | 0.806862 | 6.693460e-50 | -8.615850e-47 |
| Msa0107250 | Msa0509390 | 0.820121 | 8.107589e-53 | -8.615850e-47 |
| Msa0107250 | Msa0516040 | 0.820719 | 5.913293e-53 | -8.615850e-47 |
| Msa0107250 | Msa0519220 | 0.822299 | 2.551268e-53 | -8.615850e-47 |
| Msa0107250 | Msa0521880 | 0.822202 | 2.687264e-53 | -8.615850e-47 |
| Msa0107250 | Msa0526710 | 0.827105 | 1.879581e-54 | -8.615850e-47 |
| Msa0107250 | Msa0535030 | 0.817332 | 3.484575e-52 | -8.615850e-47 |
| Msa0107250 | Msa0535060 | 0.813682 | 2.261991e-51 | -8.615850e-47 |
| Msa0107250 | Msa0541860 | 0.813181 | 2.915493e-51 | -8.615850e-47 |
| Msa0107250 | Msa0553220 | -0.802902 | 4.499591e-49 | -8.615850e-47 |
| Msa0107250 | Msa0561540 | -0.816813 | 4.557047e-52 | -8.615850e-47 |
| Msa0107250 | Msa0591060 | 0.850017 | 2.228645e-60 | -8.615850e-47 |
| Msa0107250 | Msa0591770 | 0.842390 | 2.663255e-58 | -8.615850e-47 |
| Msa0107250 | Msa0598460 | 0.812900 | 3.358942e-51 | -8.615850e-47 |
| Msa0107250 | Msa0607200 | 0.811555 | 6.602461e-51 | -8.615850e-47 |
| Msa0107250 | Msa0616020 | 0.803971 | 2.702030e-49 | -8.615850e-47 |
| Msa0107250 | Msa0620810 | 0.806090 | 9.739673e-50 | -8.615850e-47 |
| Msa0107250 | Msa0638130 | -0.804979 | 1.665382e-49 | -8.615850e-47 |
| Msa0107250 | Msa0641670 | 0.800177 | 1.628798e-48 | -8.615850e-47 |
| Msa0107250 | Msa0654760 | -0.834704 | 2.570190e-56 | -8.615850e-47 |
| Msa0107250 | Msa0660540 | 0.811746 | 6.000732e-51 | -8.615850e-47 |
| Msa0107250 | Msa0669850 | 0.816827 | 4.524762e-52 | -8.615850e-47 |
| Msa0107250 | Msa0680240 | 0.809598 | 1.748613e-50 | -8.615850e-47 |
| Msa0107250 | Msa0682780 | 0.802974 | 4.349268e-49 | -8.615850e-47 |
| Msa0107250 | Msa0684500 | 0.803101 | 4.094036e-49 | -8.615850e-47 |
| Msa0107250 | Msa0690160 | 0.808241 | 3.411371e-50 | -8.615850e-47 |
| Msa0107250 | Msa0701280 | 0.802105 | 6.569897e-49 | -8.615850e-47 |
| Msa0107250 | Msa0703230 | 0.817984 | 2.483622e-52 | -8.615850e-47 |
| Msa0107250 | Msa0724830 | 0.806969 | 6.354318e-50 | -8.615850e-47 |
| Msa0107250 | Msa0743260 | 0.844758 | 6.199109e-59 | -8.615850e-47 |
| Msa0107250 | Msa0790610 | 0.801960 | 7.035298e-49 | -8.615850e-47 |
| Msa0107250 | Msa0795090 | 0.803020 | 4.253589e-49 | -8.615850e-47 |
| Msa0107250 | Msa0803620 | 0.800719 | 1.262935e-48 | -8.615850e-47 |
| Msa0107250 | Msa0804230 | 0.808799 | 2.593153e-50 | -8.615850e-47 |
| Msa0107250 | Msa0813720 | 0.821482 | 3.945148e-53 | -8.615850e-47 |
| Msa0107250 | Msa0813740 | 0.811985 | 5.322566e-51 | -8.615850e-47 |
| Msa0107250 | Msa0831580 | 0.806073 | 9.820665e-50 | -8.615850e-47 |
| Msa0107250 | Msa0845750 | 0.816017 | 6.867063e-52 | -8.615850e-47 |
| Msa0107250 | Msa0850960 | 0.828465 | 8.854399e-55 | -8.615850e-47 |
| Msa0107250 | Msa0874500 | 0.807570 | 4.739947e-50 | -8.615850e-47 |
| Msa0107250 | Msa0900630 | 0.801415 | 9.102449e-49 | -8.615850e-47 |
| Msa0107250 | Msa0932780 | -0.800960 | 1.127684e-48 | -8.615850e-47 |
| Msa0107250 | Msa0937670 | 0.804463 | 2.134773e-49 | -8.615850e-47 |
| Msa0107250 | Msa0941730 | 0.805748 | 1.149313e-49 | -8.615850e-47 |
| Msa0107250 | Msa0970570 | -0.816342 | 5.811590e-52 | -8.615850e-47 |
| Msa0107250 | Msa1000940 | 0.829417 | 5.208801e-55 | -8.615850e-47 |
| Msa0107250 | Msa1026760 | 0.800495 | 1.402868e-48 | -8.615850e-47 |
| Msa0107250 | Msa1026790 | 0.809026 | 2.319120e-50 | -8.615850e-47 |
| Msa0107250 | Msa1066490 | 0.809357 | 1.969544e-50 | -8.615850e-47 |
| Msa0107250 | Msa1082700 | 0.801375 | 9.277381e-49 | -8.615850e-47 |
| Msa0107250 | Msa1109570 | 0.807968 | 3.900560e-50 | -8.615850e-47 |
| Msa0107250 | Msa1134110 | 0.816944 | 4.258776e-52 | -8.615850e-47 |
| Msa0107250 | Msa1171870 | 0.800136 | 1.660069e-48 | -8.615850e-47 |
| Msa0107250 | Msa1181850 | 0.822596 | 2.176206e-53 | -8.615850e-47 |
| Msa0107250 | Msa1181860 | 0.830151 | 3.451884e-55 | -8.615850e-47 |
| Msa0107250 | Msa1233890 | 0.810533 | 1.099390e-50 | -8.615850e-47 |
| Msa0107250 | Msa1249870 | 0.812866 | 3.416684e-51 | -8.615850e-47 |
| Msa0107250 | Msa1251730 | 0.805533 | 1.274840e-49 | -8.615850e-47 |
| Msa0107250 | Msa1264020 | 0.808732 | 2.680060e-50 | -8.615850e-47 |
| Msa0107250 | Msa1306430 | 0.802904 | 4.495062e-49 | -8.615850e-47 |
| Msa0107250 | Msa1340020 | 0.806271 | 8.918782e-50 | -8.615850e-47 |
| Msa0107250 | Msa1392200 | 0.815748 | 7.887861e-52 | -8.615850e-47 |
| Msa0107250 | Msa1417530 | 0.815455 | 9.162884e-52 | -8.615850e-47 |
| Msa0107250 | Msa1427760 | 0.801541 | 8.577509e-49 | -8.615850e-47 |
| Msa0107250 | Msa1445100 | 0.805109 | 1.564513e-49 | -8.615850e-47 |
| Msa0107250 | Msa1448510 | 0.801291 | 9.648179e-49 | -8.615850e-47 |
| Msa0107250 | Msa1453080 | 0.815041 | 1.132699e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107250 | MtrunA17_Chr1g0163301 | 95.690 | 232 | 10 | 0 | 1 | 232 | 1 | 232 | 6.54e-167 | 471 |
| Msa0107250 | MtrunA17_Chr1g0163301 | 95.536 | 112 | 4 | 1 | 290 | 401 | 227 | 337 | 5.40e-68 | 218 |
| Msa0107250 | MtrunA17_Chr4g0037581 | 61.714 | 175 | 62 | 3 | 1 | 172 | 1 | 173 | 1.66e-64 | 204 |
| Msa0107250 | MtrunA17_Chr2g0329631 | 44.295 | 149 | 75 | 4 | 89 | 232 | 39 | 184 | 4.49e-30 | 116 |
| Msa0107250 | MtrunA17_Chr4g0037591 | 50.725 | 69 | 33 | 1 | 164 | 232 | 4 | 71 | 7.81e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107250 | AT1G60670.4 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 1.03e-43 | 152 |
| Msa0107250 | AT1G60670.1 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 2.40e-43 | 150 |
| Msa0107250 | AT1G60670.5 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 3.26e-43 | 152 |
| Msa0107250 | AT1G60670.5 | 57.143 | 63 | 26 | 1 | 287 | 349 | 175 | 236 | 8.33e-14 | 71.2 |
| Msa0107250 | AT1G60670.2 | 48.515 | 202 | 79 | 9 | 37 | 232 | 1 | 183 | 5.02e-43 | 151 |
| Msa0107250 | AT1G60670.2 | 55.072 | 69 | 30 | 1 | 287 | 355 | 175 | 242 | 3.98e-14 | 72.4 |
| Msa0107250 | AT1G60670.3 | 47.236 | 199 | 81 | 7 | 37 | 232 | 1 | 178 | 7.52e-42 | 148 |
| Msa0107250 | AT1G60670.3 | 55.072 | 69 | 30 | 1 | 287 | 355 | 170 | 237 | 3.96e-14 | 72.0 |
| Msa0107250 | AT1G10820.2 | 46.429 | 196 | 96 | 5 | 37 | 232 | 1 | 187 | 3.49e-41 | 146 |
| Msa0107250 | AT1G10820.2 | 60.870 | 69 | 26 | 1 | 287 | 355 | 179 | 246 | 3.99e-16 | 78.2 |
| Msa0107250 | AT3G07565.4 | 32.990 | 291 | 119 | 7 | 58 | 344 | 41 | 259 | 2.37e-39 | 142 |
| Msa0107250 | AT1G10820.1 | 53.793 | 145 | 63 | 3 | 88 | 232 | 21 | 161 | 1.10e-36 | 134 |
| Msa0107250 | AT1G10820.1 | 60.870 | 69 | 26 | 1 | 287 | 355 | 153 | 220 | 3.64e-16 | 77.8 |
| Msa0107250 | AT3G07565.1 | 38.764 | 178 | 89 | 3 | 58 | 232 | 41 | 201 | 4.84e-33 | 125 |
| Msa0107250 | AT3G07565.3 | 38.547 | 179 | 89 | 4 | 58 | 232 | 41 | 202 | 2.75e-31 | 120 |
| Msa0107250 | AT3G07565.2 | 37.838 | 148 | 73 | 2 | 58 | 202 | 41 | 172 | 1.27e-26 | 105 |
| Msa0107250 | AT1G68160.1 | 36.777 | 242 | 128 | 7 | 1 | 239 | 3 | 222 | 1.38e-20 | 91.3 |
Find 108 sgRNAs with CRISPR-Local
Find 502 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCAATGGGAAATTATTT+TGG | 0.109896 | 1_3:+17256148 | Msa0107250:CDS |
| CACCTTGAAAGTAGATAAAT+TGG | 0.239951 | 1_3:-17260671 | None:intergenic |
| GAAGTGAAGTTATAGTTTCT+TGG | 0.258554 | 1_3:+17255933 | Msa0107250:five_prime_UTR |
| CTTCTTGTTGATTCTGTGCC+TGG | 0.268576 | 1_3:+17256277 | Msa0107250:CDS |
| GGGTTGAATAATGATACTTC+TGG | 0.310719 | 1_3:+17256169 | Msa0107250:CDS |
| TGTTGATGAACAGTATAAAT+TGG | 0.341813 | 1_3:+17256336 | Msa0107250:CDS |
| ATATGAATTCATCTTTGAAT+TGG | 0.346328 | 1_3:+17256074 | Msa0107250:CDS |
| ATGATGTATTCGGGGAATTC+AGG | 0.349298 | 1_3:+17256196 | Msa0107250:CDS |
| TTCCAATTTATCTACTTTCA+AGG | 0.352868 | 1_3:+17260669 | Msa0107250:CDS |
| TTCTGGGATGATGATGTATT+CGG | 0.353610 | 1_3:+17256186 | Msa0107250:CDS |
| TTGTGTGTGGGAAGAATAAT+TGG | 0.355860 | 1_3:-17255551 | None:intergenic |
| ATTTAGGATCTAATTCCATC+TGG | 0.380662 | 1_3:+17255845 | Msa0107250:intron |
| ACTCCGGAATAGTGTGATAT+TGG | 0.380697 | 1_3:-17263658 | None:intergenic |
| CACGAATACGTGGCCACACT+TGG | 0.381306 | 1_3:-17259861 | None:intergenic |
| TTCGTCTGTTATAAGTCAAC+CGG | 0.391697 | 1_3:+17256234 | Msa0107250:CDS |
| CTGTTCGTGATGTTGCTTTG+AGG | 0.405905 | 1_3:+17258703 | Msa0107250:CDS |
| CTTTGAGTAGGCAATCTTGA+TGG | 0.411810 | 1_3:-17263552 | None:intergenic |
| TTGACATACCTCATGATACT+TGG | 0.412002 | 1_3:-17258654 | None:intergenic |
| TTTCCCATTGGAACCATCTC+AGG | 0.412066 | 1_3:-17256139 | None:intergenic |
| TTCTCTTCAAGGAATTTGAA+TGG | 0.419001 | 1_3:+17255875 | Msa0107250:five_prime_UTR |
| TGATCCCGTGAAGCGACTCT+TGG | 0.424126 | 1_3:+17260615 | Msa0107250:CDS |
| AGTCAACCGGGGATTGCGTC+TGG | 0.427021 | 1_3:+17256247 | Msa0107250:CDS |
| GGAATTCAGGCGTTGTTAGT+AGG | 0.427819 | 1_3:+17256209 | Msa0107250:CDS |
| TGGCAGTGCCACTACCCATT+TGG | 0.434605 | 1_3:-17255510 | None:intergenic |
| GGTGTGGAAGTCAATTGTTT+TGG | 0.435394 | 1_3:+17263604 | Msa0107250:CDS |
| TGTGAACGTGGCTGCGGCAG+AGG | 0.438381 | 1_3:+17261873 | Msa0107250:CDS |
| TCTGGGATGATGATGTATTC+GGG | 0.440187 | 1_3:+17256187 | Msa0107250:CDS |
| GTTATAGTTTCTTGGCAAGT+TGG | 0.441203 | 1_3:+17255941 | Msa0107250:five_prime_UTR |
| TGGTAAAGAAGCTCAACAAT+AGG | 0.448131 | 1_3:+17259124 | Msa0107250:CDS |
| ACACAGGAAGTGGAAGCATT+TGG | 0.455633 | 1_3:-17262848 | None:intergenic |
| CATGCAATATCATTTGAATC+TGG | 0.456790 | 1_3:+17256097 | Msa0107250:CDS |
| TTTGGTGCTGCATGGGATTG+AGG | 0.458693 | 1_3:+17263622 | Msa0107250:CDS |
| TTACCAATATCACACTATTC+CGG | 0.461237 | 1_3:+17263655 | Msa0107250:CDS |
| ATTGAAGCATGATGCAGGTT+TGG | 0.461747 | 1_3:+17256300 | Msa0107250:CDS |
| AAAAGTATCAAATGCCAAAT+GGG | 0.463344 | 1_3:+17255496 | Msa0107250:five_prime_UTR |
| CAACGGATACCATATGATAA+TGG | 0.463701 | 1_3:+17259909 | Msa0107250:CDS |
| TTCGTGTGTATCACATCCTA+TGG | 0.470986 | 1_3:+17259878 | Msa0107250:CDS |
| TGAATGTTTGTGGTATATAG+TGG | 0.471836 | 1_3:+17255970 | Msa0107250:five_prime_UTR |
| CGTGGCTGCGGCAGAGGTCA+TGG | 0.476113 | 1_3:+17261879 | Msa0107250:CDS |
| GCCACACTTGGGGTTAGAAC+TGG | 0.480931 | 1_3:-17259849 | None:intergenic |
| GTGATGTTGCTTTGAGGTGT+AGG | 0.481867 | 1_3:+17258709 | Msa0107250:CDS |
| TTATACTGACCATTATCATA+TGG | 0.485193 | 1_3:-17259918 | None:intergenic |
| GGTTGAATAATGATACTTCT+GGG | 0.485200 | 1_3:+17256170 | Msa0107250:CDS |
| TGCTCCAAGAGTCGCTTCAC+GGG | 0.489073 | 1_3:-17260619 | None:intergenic |
| TGTTAGTAGCTTGCCTGAGA+TGG | 0.491391 | 1_3:+17256126 | Msa0107250:CDS |
| GAATTCCCTTGAGCTTCTAA+AGG | 0.492399 | 1_3:+17261041 | Msa0107250:intron |
| AACCCAAAATAATTTCCCAT+TGG | 0.495621 | 1_3:-17256151 | None:intergenic |
| ACTGGCTGCATACACTGCTT+TGG | 0.504226 | 1_3:-17259831 | None:intergenic |
| TACAAATAGTTGAAAAGTGA+TGG | 0.505840 | 1_3:+17256018 | Msa0107250:exon |
| TTGCTCCAAGAGTCGCTTCA+CGG | 0.512660 | 1_3:-17260620 | None:intergenic |
| CTGCGGCAGAGGTCATGGTC+AGG | 0.513147 | 1_3:+17261884 | Msa0107250:CDS |
| ACGAATACGTGGCCACACTT+GGG | 0.513683 | 1_3:-17259860 | None:intergenic |
| AAGTTAAGAAATTTGTGTGT+GGG | 0.520990 | 1_3:-17255563 | None:intergenic |
| TGCTTTGGTGATGAAACCAT+TGG | 0.521864 | 1_3:-17259816 | None:intergenic |
| TCGTCAATCGACACAGGAAG+TGG | 0.524585 | 1_3:-17262858 | None:intergenic |
| CCTGCATCATGCTTCAATCC+AGG | 0.531622 | 1_3:-17256295 | None:intergenic |
| CCTGGATTGAAGCATGATGC+AGG | 0.532478 | 1_3:+17256295 | Msa0107250:CDS |
| CAAAGATGAATTAGAAACTC+CGG | 0.534889 | 1_3:-17263674 | None:intergenic |
| TTGGTGAATTTGAATGTTTG+TGG | 0.536198 | 1_3:+17255960 | Msa0107250:five_prime_UTR |
| TTTAGGATCTAATTCCATCT+GGG | 0.536891 | 1_3:+17255846 | Msa0107250:intron |
| CTTGCCTGAGATGGTTCCAA+TGG | 0.539348 | 1_3:+17256135 | Msa0107250:CDS |
| GTGGACAAGTGTAGAGAGGT+TGG | 0.539479 | 1_3:+17263574 | Msa0107250:CDS |
| GAACAGCCAGACGCAATCCC+CGG | 0.541451 | 1_3:-17256253 | None:intergenic |
| TCAAGATTGCCTACTCAAAG+TGG | 0.557165 | 1_3:+17263555 | Msa0107250:CDS |
| ATCAAATGCCAAATGGGTAG+TGG | 0.558971 | 1_3:+17255502 | Msa0107250:five_prime_UTR |
| AACAGTATAAATTGGAGGAG+GGG | 0.559930 | 1_3:+17256344 | Msa0107250:CDS |
| ATCCACATACTCATCAAGAA+TGG | 0.561856 | 1_3:-17262678 | None:intergenic |
| TCTTCTTCAGGATAAGCCAA+TGG | 0.562507 | 1_3:+17259800 | Msa0107250:intron |
| TATGTAATATACTACTTGCA+AGG | 0.565240 | 1_3:-17262884 | None:intergenic |
| CGAATACGTGGCCACACTTG+GGG | 0.565432 | 1_3:-17259859 | None:intergenic |
| TGAACAGTATAAATTGGAGG+AGG | 0.569871 | 1_3:+17256342 | Msa0107250:CDS |
| AGCATTTGGCTCATTATACC+AGG | 0.571884 | 1_3:-17262834 | None:intergenic |
| TTGCCTGAGATGGTTCCAAT+GGG | 0.573001 | 1_3:+17256136 | Msa0107250:CDS |
| TGAGGATGTGAACGTGGCTG+CGG | 0.573134 | 1_3:+17261867 | Msa0107250:CDS |
| AGTGAGCCTTTAGAAGCTCA+AGG | 0.575461 | 1_3:-17261047 | None:intergenic |
| CGGCAGAGGTCATGGTCAGG+TGG | 0.575819 | 1_3:+17261887 | Msa0107250:CDS |
| AAAGTTAAGAAATTTGTGTG+TGG | 0.579945 | 1_3:-17255564 | None:intergenic |
| ATCCGTTGACTTCTGTCCAT+AGG | 0.588060 | 1_3:-17259894 | None:intergenic |
| TAATCTCTGTTCGCATAACA+TGG | 0.591770 | 1_3:-17261122 | None:intergenic |
| TATATTACATAATAAAACTC+AGG | 0.597323 | 1_3:+17262896 | Msa0107250:CDS |
| TGATGAACAGTATAAATTGG+AGG | 0.605084 | 1_3:+17256339 | Msa0107250:CDS |
| GAACAGTATAAATTGGAGGA+GGG | 0.605834 | 1_3:+17256343 | Msa0107250:CDS |
| TGCAGCATGAGAGCAATGCC+TGG | 0.606883 | 1_3:+17262816 | Msa0107250:intron |
| TCGTCTGTTATAAGTCAACC+GGG | 0.612438 | 1_3:+17256235 | Msa0107250:CDS |
| ATGCAGGTTTGGCTGCTGAG+TGG | 0.614045 | 1_3:+17256311 | Msa0107250:CDS |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.619616 | 1_3:+17258712 | Msa0107250:CDS |
| GAAGAGAAAGAAAACCCAGA+TGG | 0.619633 | 1_3:-17255860 | None:intergenic |
| AAAGAAGCTCAACAATAGGA+AGG | 0.622268 | 1_3:+17259128 | Msa0107250:CDS |
| TACACTTGTCCACTTTGAGT+AGG | 0.627153 | 1_3:-17263564 | None:intergenic |
| AGGTCCTCGTCAATCGACAC+AGG | 0.634291 | 1_3:-17262864 | None:intergenic |
| GCCAGTTCTAACCCCAAGTG+TGG | 0.637597 | 1_3:+17259848 | Msa0107250:CDS |
| ACTTCCTGTGTCGATTGACG+AGG | 0.637696 | 1_3:+17262860 | Msa0107250:CDS |
| CAAAGTGGACAAGTGTAGAG+AGG | 0.649492 | 1_3:+17263570 | Msa0107250:CDS |
| GTGAGCCTTTAGAAGCTCAA+GGG | 0.651658 | 1_3:-17261046 | None:intergenic |
| GCAATATCATTTGAATCTGG+TGG | 0.655444 | 1_3:+17256100 | Msa0107250:CDS |
| ATGTGATACACACGAATACG+TGG | 0.661179 | 1_3:-17259871 | None:intergenic |
| TGTGTGGGAAGAATAATTGG+TGG | 0.664229 | 1_3:-17255548 | None:intergenic |
| AAGGAAATCAGAAGAGCACA+TGG | 0.666279 | 1_3:+17259104 | Msa0107250:CDS |
| CTGGGATGATGATGTATTCG+GGG | 0.667463 | 1_3:+17256188 | Msa0107250:CDS |
| CTGATGAGCCAAGTATCATG+AGG | 0.671779 | 1_3:+17258646 | Msa0107250:CDS |
| GTGTGATATTGGTAATGATG+TGG | 0.674203 | 1_3:-17263647 | None:intergenic |
| TGTGCCGTGTCTGACTGAAG+AGG | 0.689673 | 1_3:-17262646 | None:intergenic |
| ATCCTATGGACAGAAGTCAA+CGG | 0.697598 | 1_3:+17259892 | Msa0107250:CDS |
| TCGACCTCTTCAGTCAGACA+CGG | 0.712664 | 1_3:+17262642 | Msa0107250:CDS |
| CGTCTGTTATAAGTCAACCG+GGG | 0.721896 | 1_3:+17256236 | Msa0107250:CDS |
| TTTAGCTGAGGATGTGAACG+TGG | 0.726042 | 1_3:+17261861 | Msa0107250:intron |
| GTATGACCATACTTGTGACA+TGG | 0.745610 | 1_3:-17261929 | None:intergenic |
| GGTGGTTATAGTGAGTGCAG+TGG | 0.761426 | 1_3:-17255530 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAAAATAATATT+AGG | - | chr1_3:17258780-17258799 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTACTTTTG+TGG | - | chr1_3:17255476-17255495 | None:intergenic | 10.0% |
| !!! | TTCAATAATATTTTTCTTTT+TGG | + | chr1_3:17257415-17257434 | Msa0107250:intron | 10.0% |
| !!! | TGATAAAAAACATTTTATTA+AGG | - | chr1_3:17261074-17261093 | None:intergenic | 10.0% |
| !!! | TGAATTAATTAACAATTTTT+AGG | + | chr1_3:17262436-17262455 | Msa0107250:intron | 10.0% |
| !! | TAAAATATTCAATTAATTAG+AGG | - | chr1_3:17263016-17263035 | None:intergenic | 10.0% |
| !! | TTTAGGTAAAAATTTGATAT+GGG | + | chr1_3:17255624-17255643 | Msa0107250:intron | 15.0% |
| !! | AACTATCACAAAAAAAAAAA+TGG | - | chr1_3:17255812-17255831 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_3:17256915-17256934 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_3:17256916-17256935 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1_3:17256980-17256999 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1_3:17256981-17257000 | None:intergenic | 15.0% |
| !! | ATAAGAAAATAATAACTTCA+TGG | - | chr1_3:17257654-17257673 | None:intergenic | 15.0% |
| !!! | ATTTCAAATTTTAAAGGTTA+AGG | - | chr1_3:17258254-17258273 | None:intergenic | 15.0% |
| !!! | AACCTTTAAAATTTGAAATT+TGG | + | chr1_3:17258255-17258274 | Msa0107250:intron | 15.0% |
| !!! | TTCCAAATTTCAAATTTTAA+AGG | - | chr1_3:17258260-17258279 | None:intergenic | 15.0% |
| !!! | TATTTTTATCCAAGATAAAA+AGG | + | chr1_3:17258815-17258834 | Msa0107250:intron | 15.0% |
| !! | GTTATTACATAAAATACTTT+AGG | + | chr1_3:17259583-17259602 | Msa0107250:intron | 15.0% |
| !! | TACTAAAAATAACAAATACT+AGG | + | chr1_3:17260038-17260057 | Msa0107250:intron | 15.0% |
| !! | TTGCTATAAATTAATTCTAA+AGG | + | chr1_3:17260244-17260263 | Msa0107250:intron | 15.0% |
| !!! | TATAAATTAATTCTAAAGGA+TGG | + | chr1_3:17260248-17260267 | Msa0107250:intron | 15.0% |
| !! | ATGAATAATCATACTTTATT+AGG | - | chr1_3:17260315-17260334 | None:intergenic | 15.0% |
| !! | TATATTACATAATAAAACTC+AGG | + | chr1_3:17262896-17262915 | Msa0107250:CDS | 15.0% |
| !! | TTTGTTACCAAAAATTCAAA+AGG | + | chr1_3:17255584-17255603 | Msa0107250:five_prime_UTR | 20.0% |
| !! | TTGTTACCAAAAATTCAAAA+GGG | + | chr1_3:17255585-17255604 | Msa0107250:five_prime_UTR | 20.0% |
| !! | CTTTAGGTAAAAATTTGATA+TGG | + | chr1_3:17255623-17255642 | Msa0107250:intron | 20.0% |
| !!! | TCAAATACTGATTTTCATTA+TGG | + | chr1_3:17256049-17256068 | Msa0107250:CDS | 20.0% |
| !! | ATATGAATTCATCTTTGAAT+TGG | + | chr1_3:17256074-17256093 | Msa0107250:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1_3:17256846-17256865 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1_3:17256882-17256901 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1_3:17256883-17256902 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1_3:17256956-17256975 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1_3:17256979-17256998 | None:intergenic | 20.0% |
| !! | CTAAAAATTGTGTTTATAAG+TGG | - | chr1_3:17257254-17257273 | None:intergenic | 20.0% |
| !!! | CACTTATAAACACAATTTTT+AGG | + | chr1_3:17257252-17257271 | Msa0107250:intron | 20.0% |
| !! | AGAAACATGTTTAAGTAATA+TGG | + | chr1_3:17257384-17257403 | Msa0107250:intron | 20.0% |
| !!! | TTTTCTTTTTGGCAAAAAAA+AGG | + | chr1_3:17257426-17257445 | Msa0107250:intron | 20.0% |
| !! | TTCTTATCTTAAGTTCATAA+AGG | + | chr1_3:17257667-17257686 | Msa0107250:intron | 20.0% |
| !! | TTTGAAAAAACAAAACAAGA+TGG | - | chr1_3:17257910-17257929 | None:intergenic | 20.0% |
| !! | ATACTTTCAAAAGTCTAATT+AGG | + | chr1_3:17258013-17258032 | Msa0107250:intron | 20.0% |
| !! | TACTTTCAAAAGTCTAATTA+GGG | + | chr1_3:17258014-17258033 | Msa0107250:intron | 20.0% |
| !! | TAAGAAAGTAATATCACATT+TGG | - | chr1_3:17258133-17258152 | None:intergenic | 20.0% |
| !! | ATATATAACACATTTGATGT+TGG | - | chr1_3:17258159-17258178 | None:intergenic | 20.0% |
| !! | TTGAAATTTGGAAGTTATTA+TGG | + | chr1_3:17258267-17258286 | Msa0107250:intron | 20.0% |
| !! | TGAAATTTGGAAGTTATTAT+GGG | + | chr1_3:17258268-17258287 | Msa0107250:intron | 20.0% |
| !! | GCAATAGAAAATATAAAAAG+AGG | - | chr1_3:17258576-17258595 | None:intergenic | 20.0% |
| !! | AAAAAAAGGAAAGAAAACAA+GGG | - | chr1_3:17258603-17258622 | None:intergenic | 20.0% |
| !! | TGGAACATTAACTTTAAATA+CGG | - | chr1_3:17258851-17258870 | None:intergenic | 20.0% |
| !! | ATATCAATTTGATCATGATA+TGG | - | chr1_3:17258871-17258890 | None:intergenic | 20.0% |
| !!! | AGTATTTTTCACTTTTGAAT+GGG | - | chr1_3:17258942-17258961 | None:intergenic | 20.0% |
| !!! | TAGTATTTTTCACTTTTGAA+TGG | - | chr1_3:17258943-17258962 | None:intergenic | 20.0% |
| !! | TTATACTTAATGCAATATGT+TGG | - | chr1_3:17259002-17259021 | None:intergenic | 20.0% |
| !! | ATCATAAAACATCAATCAAA+TGG | + | chr1_3:17259385-17259404 | Msa0107250:intron | 20.0% |
| !! | TCATAAAACATCAATCAAAT+GGG | + | chr1_3:17259386-17259405 | Msa0107250:intron | 20.0% |
| !! | ACTTTATAGCTATTGTTATA+CGG | - | chr1_3:17259531-17259550 | None:intergenic | 20.0% |
| !!! | TTCTAAATTTTTTCTTCTTC+AGG | + | chr1_3:17259788-17259807 | Msa0107250:intron | 20.0% |
| !! | TAAAAATAACAAATACTAGG+TGG | + | chr1_3:17260041-17260060 | Msa0107250:intron | 20.0% |
| !!! | AAACAGTAAAACATAGTTTT+GGG | - | chr1_3:17260226-17260245 | None:intergenic | 20.0% |
| !!! | ACTTCCTATCTATTTTTTAA+GGG | - | chr1_3:17260771-17260790 | None:intergenic | 20.0% |
| !! | TACTCCAAAATTTAATTCTA+TGG | + | chr1_3:17260821-17260840 | Msa0107250:intron | 20.0% |
| !! | ACTCCAAAATTTAATTCTAT+GGG | + | chr1_3:17260822-17260841 | Msa0107250:intron | 20.0% |
| !!! | AATGTTTTTTATCATGTCAA+AGG | + | chr1_3:17261080-17261099 | Msa0107250:CDS | 20.0% |
| !!! | AATATCCATATCTATTTCTT+CGG | + | chr1_3:17261665-17261684 | Msa0107250:intron | 20.0% |
| !! | AAAGGATTTACATAATTCAA+AGG | - | chr1_3:17262499-17262518 | None:intergenic | 20.0% |
| !!! | AAACAAGTTGAATACTTTAA+GGG | + | chr1_3:17263060-17263079 | Msa0107250:intron | 20.0% |
| !! | TCTTGTAATTCTTAATTTCA+TGG | + | chr1_3:17263373-17263392 | Msa0107250:intron | 20.0% |
| !!! | AAAAAGTATCAAATGCCAAA+TGG | + | chr1_3:17255495-17255514 | Msa0107250:five_prime_UTR | 25.0% |
| !!! | AAAAGTATCAAATGCCAAAT+GGG | + | chr1_3:17255496-17255515 | Msa0107250:five_prime_UTR | 25.0% |
| ! | AAGTTAAGAAATTTGTGTGT+GGG | - | chr1_3:17255566-17255585 | None:intergenic | 25.0% |
| ! | AAAGTTAAGAAATTTGTGTG+TGG | - | chr1_3:17255567-17255586 | None:intergenic | 25.0% |
| !! | GTTCTCTTTTCTTTATCTTT+AGG | + | chr1_3:17255607-17255626 | Msa0107250:five_prime_UTR | 25.0% |
| !! | GTTTGTTCTTTTGTGTATTT+AGG | + | chr1_3:17255829-17255848 | Msa0107250:intron | 25.0% |
| !!! | TTTGAATGGTTTTGATGAAT+TGG | + | chr1_3:17255889-17255908 | Msa0107250:five_prime_UTR | 25.0% |
| ! | TACAAATAGTTGAAAAGTGA+TGG | + | chr1_3:17256018-17256037 | Msa0107250:exon | 25.0% |
| !! | TTCCAATGGGAAATTATTTT+GGG | + | chr1_3:17256149-17256168 | Msa0107250:CDS | 25.0% |
| !! | TGTTGATGAACAGTATAAAT+TGG | + | chr1_3:17256336-17256355 | Msa0107250:CDS | 25.0% |
| ! | TCAAGTAAGTAGTTTATCTT+TGG | + | chr1_3:17256371-17256390 | Msa0107250:intron | 25.0% |
| ! | TGACTGAATTTGAATATCAT+AGG | - | chr1_3:17256425-17256444 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1_3:17256847-17256866 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr1_3:17256957-17256976 | None:intergenic | 25.0% |
| ! | ATAACTCAATCCTACATAAT+CGG | + | chr1_3:17257206-17257225 | Msa0107250:intron | 25.0% |
| ! | AACAGGTACAATAAAAACAT+AGG | - | chr1_3:17257803-17257822 | None:intergenic | 25.0% |
| ! | AAGCTGAAAAAATACAAAAC+AGG | - | chr1_3:17257820-17257839 | None:intergenic | 25.0% |
| ! | ATTGAAGAGAATGTTATAGA+CGG | - | chr1_3:17258108-17258127 | None:intergenic | 25.0% |
| ! | GAAATTTGGAAGTTATTATG+GGG | + | chr1_3:17258269-17258288 | Msa0107250:intron | 25.0% |
| ! | TAGAATTGCTTGAATCAAAT+TGG | + | chr1_3:17258496-17258515 | Msa0107250:intron | 25.0% |
| ! | CAAAAAAAGGAAAGAAAACA+AGG | - | chr1_3:17258604-17258623 | None:intergenic | 25.0% |
| !! | CATTCTTATCCTTTTTATCT+TGG | - | chr1_3:17258827-17258846 | None:intergenic | 25.0% |
| !!! | GTATTTTTCACTTTTGAATG+GGG | - | chr1_3:17258941-17258960 | None:intergenic | 25.0% |
| !! | TCATACTTGATCTTTTGAAT+TGG | + | chr1_3:17259221-17259240 | Msa0107250:intron | 25.0% |
| ! | CTGAATCAATTAATGTCATT+AGG | + | chr1_3:17259739-17259758 | Msa0107250:intron | 25.0% |
| ! | TTATACTGACCATTATCATA+TGG | - | chr1_3:17259921-17259940 | None:intergenic | 25.0% |
| !! | TGTATTTTTCTTTGCATAGA+TGG | + | chr1_3:17259953-17259972 | Msa0107250:intron | 25.0% |
| !! | AAAATTGACAACACTGTTTT+GGG | - | chr1_3:17260076-17260095 | None:intergenic | 25.0% |
| !! | AATTTTGTTAATGCGAATTG+CGG | + | chr1_3:17260090-17260109 | Msa0107250:intron | 25.0% |
| !! | CAAACAGTAAAACATAGTTT+TGG | - | chr1_3:17260227-17260246 | None:intergenic | 25.0% |
| !! | TTTATTAGGCTTTTATGACT+GGG | - | chr1_3:17260301-17260320 | None:intergenic | 25.0% |
| ! | TTAAAGTTTAATCTGCTAAC+TGG | + | chr1_3:17260347-17260366 | Msa0107250:intron | 25.0% |
| ! | AGTCAAATTCAGAATTATTG+AGG | - | chr1_3:17260376-17260395 | None:intergenic | 25.0% |
| ! | TTCCAATTTATCTACTTTCA+AGG | + | chr1_3:17260669-17260688 | Msa0107250:CDS | 25.0% |
| ! | GTTTGTAAGATCATAAATAC+TGG | + | chr1_3:17260725-17260744 | Msa0107250:intron | 25.0% |
| ! | TAAGCCCTTAAAAAATAGAT+AGG | + | chr1_3:17260764-17260783 | Msa0107250:intron | 25.0% |
| !!! | GACTTCCTATCTATTTTTTA+AGG | - | chr1_3:17260772-17260791 | None:intergenic | 25.0% |
| !! | TGTCCCATAGAATTAAATTT+TGG | - | chr1_3:17260828-17260847 | None:intergenic | 25.0% |
| ! | AATTAATTGATGTGTTCTGT+AGG | + | chr1_3:17260876-17260895 | Msa0107250:intron | 25.0% |
| !!! | GCTTAGCTTGTTTATATATT+CGG | + | chr1_3:17260967-17260986 | Msa0107250:intron | 25.0% |
| !! | TTTTTATCATGTCAAAGGAA+TGG | + | chr1_3:17261085-17261104 | Msa0107250:CDS | 25.0% |
| ! | GGACAAACATACATATTTAA+AGG | - | chr1_3:17261258-17261277 | None:intergenic | 25.0% |
| ! | GTACAAGTTGCATTATTATT+TGG | + | chr1_3:17261465-17261484 | Msa0107250:intron | 25.0% |
| ! | AAGTTGCATTATTATTTGGT+AGG | + | chr1_3:17261469-17261488 | Msa0107250:intron | 25.0% |
| ! | TTCATTAACAATGTCAAGTT+AGG | - | chr1_3:17261518-17261537 | None:intergenic | 25.0% |
| ! | GAAGCTAGGAAAATATAATT+TGG | - | chr1_3:17261567-17261586 | None:intergenic | 25.0% |
| ! | AGTATAATGTATAATGCATG+AGG | - | chr1_3:17261605-17261624 | None:intergenic | 25.0% |
| ! | GCATTATACATTATACTTAC+TGG | + | chr1_3:17261608-17261627 | Msa0107250:intron | 25.0% |
| !! | ATATCCATATCTATTTCTTC+GGG | + | chr1_3:17261666-17261685 | Msa0107250:intron | 25.0% |
| ! | TAACTAGATAAATTTGATGG+TGG | - | chr1_3:17261994-17262013 | None:intergenic | 25.0% |
| ! | GAGTAACTAGATAAATTTGA+TGG | - | chr1_3:17261997-17262016 | None:intergenic | 25.0% |
| ! | ATCTTAAATCACACTTCATT+CGG | - | chr1_3:17262299-17262318 | None:intergenic | 25.0% |
| ! | AATACAAAGTTTACAGAGAA+AGG | - | chr1_3:17262517-17262536 | None:intergenic | 25.0% |
| ! | CAGATAATGAATAGTATCAT+AGG | - | chr1_3:17262547-17262566 | None:intergenic | 25.0% |
| !!! | TGAATTAGTTTTTGCCTTTT+TGG | + | chr1_3:17262565-17262584 | Msa0107250:intron | 25.0% |
| ! | CTTAATCAATGAACTTCAAA+AGG | - | chr1_3:17262792-17262811 | None:intergenic | 25.0% |
| ! | TATGTAATATACTACTTGCA+AGG | - | chr1_3:17262887-17262906 | None:intergenic | 25.0% |
| ! | TGATTGTATAACTTCAACAA+AGG | - | chr1_3:17262965-17262984 | None:intergenic | 25.0% |
| ! | AGCATATTGCACAAAATAAA+TGG | - | chr1_3:17262993-17263012 | None:intergenic | 25.0% |
| !!! | AACTTGTTTCTATTTGTATG+TGG | - | chr1_3:17263049-17263068 | None:intergenic | 25.0% |
| !! | GAAACAAGTTGAATACTTTA+AGG | + | chr1_3:17263059-17263078 | Msa0107250:intron | 25.0% |
| ! | ATCTATGAATCTTAGTAAGA+TGG | - | chr1_3:17263202-17263221 | None:intergenic | 25.0% |
| ! | CAAAACTGAGAAATAAAGTA+TGG | - | chr1_3:17263428-17263447 | None:intergenic | 25.0% |
| !!! | CATACTTTATTTCTCAGTTT+TGG | + | chr1_3:17263426-17263445 | Msa0107250:intron | 25.0% |
| ! | AGAGAACCCTTTTGAATTTT+TGG | - | chr1_3:17255594-17255613 | None:intergenic | 30.0% |
| !! | TGAATCTGTGATGTTTTTGA+GGG | + | chr1_3:17255755-17255774 | Msa0107250:intron | 30.0% |
| ! | ATTTAGGATCTAATTCCATC+TGG | + | chr1_3:17255845-17255864 | Msa0107250:intron | 30.0% |
| ! | TTTAGGATCTAATTCCATCT+GGG | + | chr1_3:17255846-17255865 | Msa0107250:intron | 30.0% |
| TTCTCTTCAAGGAATTTGAA+TGG | + | chr1_3:17255875-17255894 | Msa0107250:five_prime_UTR | 30.0% | |
| GAAGTGAAGTTATAGTTTCT+TGG | + | chr1_3:17255933-17255952 | Msa0107250:five_prime_UTR | 30.0% | |
| TTGGTGAATTTGAATGTTTG+TGG | + | chr1_3:17255960-17255979 | Msa0107250:five_prime_UTR | 30.0% | |
| TGAATGTTTGTGGTATATAG+TGG | + | chr1_3:17255970-17255989 | Msa0107250:five_prime_UTR | 30.0% | |
| CATGCAATATCATTTGAATC+TGG | + | chr1_3:17256097-17256116 | Msa0107250:CDS | 30.0% | |
| ! | GTTCCAATGGGAAATTATTT+TGG | + | chr1_3:17256148-17256167 | Msa0107250:CDS | 30.0% |
| AACCCAAAATAATTTCCCAT+TGG | - | chr1_3:17256154-17256173 | None:intergenic | 30.0% | |
| GGTTGAATAATGATACTTCT+GGG | + | chr1_3:17256170-17256189 | Msa0107250:CDS | 30.0% | |
| TGATGAACAGTATAAATTGG+AGG | + | chr1_3:17256339-17256358 | Msa0107250:CDS | 30.0% | |
| AGTTTATCTTTGGTTGTTGT+TGG | + | chr1_3:17256381-17256400 | Msa0107250:intron | 30.0% | |
| TACAACAACTCTTAGAATCT+GGG | + | chr1_3:17256730-17256749 | Msa0107250:intron | 30.0% | |
| ! | GGAGTATTTATATGTATGGT+GGG | - | chr1_3:17256803-17256822 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1_3:17256868-17256887 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1_3:17256869-17256888 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr1_3:17256972-17256991 | None:intergenic | 30.0% | |
| ! | TCATTTAAGACAAAGCTTTC+AGG | - | chr1_3:17257300-17257319 | None:intergenic | 30.0% |
| ! | GAAAGCTTTGTCTTAAATGA+AGG | + | chr1_3:17257300-17257319 | Msa0107250:intron | 30.0% |
| !! | CTTTTTGGCAAAAAAAAGGT+AGG | + | chr1_3:17257430-17257449 | Msa0107250:intron | 30.0% |
| !! | TTGGTTTTTGAGGACTATTA+AGG | - | chr1_3:17257581-17257600 | None:intergenic | 30.0% |
| !!! | CGAATTCTATTTGGTTTTTG+AGG | - | chr1_3:17257591-17257610 | None:intergenic | 30.0% |
| CCATGTTTACGAATTCTATT+TGG | - | chr1_3:17257600-17257619 | None:intergenic | 30.0% | |
| CCAAATAGAATTCGTAAACA+TGG | + | chr1_3:17257597-17257616 | Msa0107250:intron | 30.0% | |
| TCATATCTCAAAGCAAGTTT+AGG | + | chr1_3:17257627-17257646 | Msa0107250:intron | 30.0% | |
| CATATCTCAAAGCAAGTTTA+GGG | + | chr1_3:17257628-17257647 | Msa0107250:intron | 30.0% | |
| !!! | TGTATTTTTTCAGCTTCTTG+AGG | + | chr1_3:17257824-17257843 | Msa0107250:intron | 30.0% |
| !!! | CTTTTTGCTAGGAGTATTTT+AGG | - | chr1_3:17258231-17258250 | None:intergenic | 30.0% |
| !! | ATGTTGGTAGCATAATTATC+TGG | - | chr1_3:17258986-17259005 | None:intergenic | 30.0% |
| TTTCCTATATGCATACTTTG+AGG | - | chr1_3:17259049-17259068 | None:intergenic | 30.0% | |
| ! | ATAGGAAGGTACATGAAATT+AGG | + | chr1_3:17259142-17259161 | Msa0107250:intron | 30.0% |
| CGTCAAACATTGATGTAAAA+TGG | - | chr1_3:17259272-17259291 | None:intergenic | 30.0% | |
| TAAAACATCAATCAAATGGG+TGG | + | chr1_3:17259389-17259408 | Msa0107250:intron | 30.0% | |
| ! | TCAAGGTATCTTCTTAAAGA+AGG | + | chr1_3:17259425-17259444 | Msa0107250:intron | 30.0% |
| AAAACTACCAATTCATGTCT+AGG | + | chr1_3:17259644-17259663 | Msa0107250:intron | 30.0% | |
| TGATTCAGTGTTATCTAAAG+AGG | - | chr1_3:17259727-17259746 | None:intergenic | 30.0% | |
| ! | CAAAATTGACAACACTGTTT+TGG | - | chr1_3:17260077-17260096 | None:intergenic | 30.0% |
| ! | CTTTATTAGGCTTTTATGAC+TGG | - | chr1_3:17260302-17260321 | None:intergenic | 30.0% |
| CATATGAAGTGATAAGAGTT+AGG | - | chr1_3:17260484-17260503 | None:intergenic | 30.0% | |
| TAAGACACACAACAAAAACT+AGG | - | chr1_3:17260529-17260548 | None:intergenic | 30.0% | |
| AATTCCTGACAGTAAAAACA+AGG | - | chr1_3:17260593-17260612 | None:intergenic | 30.0% | |
| CACCTTGAAAGTAGATAAAT+TGG | - | chr1_3:17260674-17260693 | None:intergenic | 30.0% | |
| ATGATCTTACAAACAAAGAC+TGG | - | chr1_3:17260719-17260738 | None:intergenic | 30.0% | |
| TAATTATCAGCAAAAACACC+TGG | - | chr1_3:17260861-17260880 | None:intergenic | 30.0% | |
| CTACTACATTGATAAGTGTA+AGG | - | chr1_3:17260945-17260964 | None:intergenic | 30.0% | |
| ! | AGCTTGTTTATATATTCGGT+AGG | + | chr1_3:17260971-17260990 | Msa0107250:intron | 30.0% |
| ATATATTCGGTAGGATAGAT+AGG | + | chr1_3:17260980-17260999 | Msa0107250:intron | 30.0% | |
| !! | AAGGCTCTAGATATTATGTT+AGG | - | chr1_3:17261213-17261232 | None:intergenic | 30.0% |
| !! | TTTTTGCTGTCAAGTTTAGA+AGG | - | chr1_3:17261414-17261433 | None:intergenic | 30.0% |
| !! | TTTTACTTCCAATTGGTGAT+AGG | - | chr1_3:17261542-17261561 | None:intergenic | 30.0% |
| !!! | TTTGGTGTTTTACTTCCAAT+TGG | - | chr1_3:17261549-17261568 | None:intergenic | 30.0% |
| AAACAATTAGCACAAAGTCA+TGG | + | chr1_3:17261801-17261820 | Msa0107250:intron | 30.0% | |
| AGAAACATTAAGCAATGAGT+AGG | - | chr1_3:17261835-17261854 | None:intergenic | 30.0% | |
| TCTTAAATCACACTTCATTC+GGG | - | chr1_3:17262298-17262317 | None:intergenic | 30.0% | |
| AGTTACGATTATCTTGTCTA+AGG | - | chr1_3:17262353-17262372 | None:intergenic | 30.0% | |
| AGAAATGTGATAACATAGCT+AGG | + | chr1_3:17262378-17262397 | Msa0107250:intron | 30.0% | |
| GAAATGTGATAACATAGCTA+GGG | + | chr1_3:17262379-17262398 | Msa0107250:intron | 30.0% | |
| TTTCTTTCATAAACAGTTGC+AGG | + | chr1_3:17262613-17262632 | Msa0107250:intron | 30.0% | |
| ! | AAGTTGAATACTTTAAGGGA+AGG | + | chr1_3:17263064-17263083 | Msa0107250:intron | 30.0% |
| ! | AATGTCTTTTCAAACTGAAC+AGG | - | chr1_3:17263130-17263149 | None:intergenic | 30.0% |
| TAAAGTATGGTAAATGTGAG+AGG | - | chr1_3:17263415-17263434 | None:intergenic | 30.0% | |
| ATGTATTACCAATTCAAGCT+AGG | + | chr1_3:17263517-17263536 | Msa0107250:intron | 30.0% | |
| AGAAATTTCCTAGCTTGAAT+TGG | - | chr1_3:17263528-17263547 | None:intergenic | 30.0% | |
| TTACCAATATCACACTATTC+CGG | + | chr1_3:17263655-17263674 | Msa0107250:CDS | 30.0% | |
| CAAAGATGAATTAGAAACTC+CGG | - | chr1_3:17263677-17263696 | None:intergenic | 30.0% | |
| TTGTGTGTGGGAAGAATAAT+TGG | - | chr1_3:17255554-17255573 | None:intergenic | 35.0% | |
| !! | CTGAATCTGTGATGTTTTTG+AGG | + | chr1_3:17255754-17255773 | Msa0107250:intron | 35.0% |
| GTTATAGTTTCTTGGCAAGT+TGG | + | chr1_3:17255941-17255960 | Msa0107250:five_prime_UTR | 35.0% | |
| GCAATATCATTTGAATCTGG+TGG | + | chr1_3:17256100-17256119 | Msa0107250:CDS | 35.0% | |
| GGGTTGAATAATGATACTTC+TGG | + | chr1_3:17256169-17256188 | Msa0107250:CDS | 35.0% | |
| !! | TTCTGGGATGATGATGTATT+CGG | + | chr1_3:17256186-17256205 | Msa0107250:CDS | 35.0% |
| TTCGTCTGTTATAAGTCAAC+CGG | + | chr1_3:17256234-17256253 | Msa0107250:CDS | 35.0% | |
| TGAACAGTATAAATTGGAGG+AGG | + | chr1_3:17256342-17256361 | Msa0107250:CDS | 35.0% | |
| GAACAGTATAAATTGGAGGA+GGG | + | chr1_3:17256343-17256362 | Msa0107250:CDS | 35.0% | |
| AACAGTATAAATTGGAGGAG+GGG | + | chr1_3:17256344-17256363 | Msa0107250:CDS | 35.0% | |
| !! | GTTGTTGTTGGTCTTGTTAT+TGG | + | chr1_3:17256393-17256412 | Msa0107250:intron | 35.0% |
| TTGGGTCGGTAAAAAATTGA+AGG | + | chr1_3:17256521-17256540 | Msa0107250:intron | 35.0% | |
| CTACAACAACTCTTAGAATC+TGG | + | chr1_3:17256729-17256748 | Msa0107250:intron | 35.0% | |
| !! | GGGAGTATTTATATGTATGG+TGG | - | chr1_3:17256804-17256823 | None:intergenic | 35.0% |
| !! | GGAGGGAGTATTTATATGTA+TGG | - | chr1_3:17256807-17256826 | None:intergenic | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1_3:17256833-17256852 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_3:17257002-17257021 | Msa0107250:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr1_3:17257015-17257034 | Msa0107250:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr1_3:17257016-17257035 | Msa0107250:intron | 35.0% | |
| ! | GACGAAGGTAGTACATTTTT+AGG | + | chr1_3:17257038-17257057 | Msa0107250:intron | 35.0% |
| ! | GAGTCTATCTAAGATCAGTT+TGG | - | chr1_3:17257158-17257177 | None:intergenic | 35.0% |
| TCTGACATCACCTTAGAATT+TGG | + | chr1_3:17257176-17257195 | Msa0107250:intron | 35.0% | |
| CTGACATCACCTTAGAATTT+GGG | + | chr1_3:17257177-17257196 | Msa0107250:intron | 35.0% | |
| TATGCTCAACCCAAATTCTA+AGG | - | chr1_3:17257189-17257208 | None:intergenic | 35.0% | |
| TTTGGCAAAAAAAAGGTAGG+AGG | + | chr1_3:17257433-17257452 | Msa0107250:intron | 35.0% | |
| AAAAGGTAGGAGGAATTGTT+TGG | + | chr1_3:17257443-17257462 | Msa0107250:intron | 35.0% | |
| ACAAAACTCTAGATGCAACT+AGG | + | chr1_3:17257495-17257514 | Msa0107250:intron | 35.0% | |
| !! | TTCTGGTGTTGGTTATTTCA+AGG | + | chr1_3:17257720-17257739 | Msa0107250:intron | 35.0% |
| ATTAGAAGAAGTGAAGCACA+TGG | - | chr1_3:17257859-17257878 | None:intergenic | 35.0% | |
| AAAGATGGAGGACAAACAAA+AGG | - | chr1_3:17258059-17258078 | None:intergenic | 35.0% | |
| ! | TTGTCCTCCATCTTTGTTTA+TGG | + | chr1_3:17258064-17258083 | Msa0107250:intron | 35.0% |
| GTGTTATATATCCCAGATAG+CGG | + | chr1_3:17258168-17258187 | Msa0107250:intron | 35.0% | |
| ! | AAAGGTTAAGGCTTTTTGCT+AGG | - | chr1_3:17258242-17258261 | None:intergenic | 35.0% |
| TTGGAAGTTATTATGGGGTT+AGG | + | chr1_3:17258274-17258293 | Msa0107250:intron | 35.0% | |
| AGTTATTATGGGGTTAGGTA+TGG | + | chr1_3:17258279-17258298 | Msa0107250:intron | 35.0% | |
| TTGTCAATAGCATGCAATAG+CGG | - | chr1_3:17258436-17258455 | None:intergenic | 35.0% | |
| ACAACGCTTTGACATTTGTA+TGG | + | chr1_3:17258452-17258471 | Msa0107250:intron | 35.0% | |
| TTGACATACCTCATGATACT+TGG | - | chr1_3:17258657-17258676 | None:intergenic | 35.0% | |
| AAAAGTGGTAAGGTAAGGTA+AGG | - | chr1_3:17258918-17258937 | None:intergenic | 35.0% | |
| TGGTAAAGAAGCTCAACAAT+AGG | + | chr1_3:17259124-17259143 | Msa0107250:CDS | 35.0% | |
| AAAGAAGCTCAACAATAGGA+AGG | + | chr1_3:17259128-17259147 | Msa0107250:CDS | 35.0% | |
| TATGTGTTTCTTGAAGAGTC+TGG | + | chr1_3:17259174-17259193 | Msa0107250:intron | 35.0% | |
| CAACGGATACCATATGATAA+TGG | + | chr1_3:17259909-17259928 | Msa0107250:CDS | 35.0% | |
| TAACAAATACTAGGTGGAAC+TGG | + | chr1_3:17260047-17260066 | Msa0107250:intron | 35.0% | |
| ATATCCGTCAAAAATTGGCA+TGG | - | chr1_3:17260137-17260156 | None:intergenic | 35.0% | |
| !! | CCAATTTTTGACGGATATGA+CGG | + | chr1_3:17260139-17260158 | Msa0107250:intron | 35.0% |
| TCATATGCTCTTACACTATC+TGG | + | chr1_3:17260497-17260516 | Msa0107250:intron | 35.0% | |
| CATATGCTCTTACACTATCT+GGG | + | chr1_3:17260498-17260517 | Msa0107250:intron | 35.0% | |
| CACACAACAAAAACTAGGAA+AGG | - | chr1_3:17260524-17260543 | None:intergenic | 35.0% | |
| !!! | TTCTCCTTGTTTTTACTGTC+AGG | + | chr1_3:17260586-17260605 | Msa0107250:intron | 35.0% |
| ACAAAGACTGGTAAAAGTGA+AGG | - | chr1_3:17260707-17260726 | None:intergenic | 35.0% | |
| TCTGTAGGAGACAAAATTGT+TGG | + | chr1_3:17260891-17260910 | Msa0107250:intron | 35.0% | |
| TAATCTCTGTTCGCATAACA+TGG | - | chr1_3:17261125-17261144 | None:intergenic | 35.0% | |
| !!! | GAGATTACTGATTTTCTGTC+CGG | + | chr1_3:17261138-17261157 | Msa0107250:CDS | 35.0% |
| GAGAAAGTTAGGGAAAGTAA+AGG | - | chr1_3:17261185-17261204 | None:intergenic | 35.0% | |
| TTAGGACTGAGAGAAAGTTA+GGG | - | chr1_3:17261195-17261214 | None:intergenic | 35.0% | |
| ! | TAGAGCCTTTTCAGTTTGAT+CGG | + | chr1_3:17261224-17261243 | Msa0107250:intron | 35.0% |
| !! | CATGATCTCCAATCACTTTT+AGG | + | chr1_3:17261285-17261304 | Msa0107250:intron | 35.0% |
| !!! | AGAAGAAGGACTTTTGGAAT+CGG | - | chr1_3:17261316-17261335 | None:intergenic | 35.0% |
| ATCGAGAGAAGTAGAATTTG+CGG | - | chr1_3:17261367-17261386 | None:intergenic | 35.0% | |
| ATTGCATGAATGAAGTTCAC+TGG | - | chr1_3:17261390-17261409 | None:intergenic | 35.0% | |
| AATGCAACTTGTACACTTTG+AGG | - | chr1_3:17261459-17261478 | None:intergenic | 35.0% | |
| TAGGTTCATAGATTCAAGCA+AGG | + | chr1_3:17261488-17261507 | Msa0107250:intron | 35.0% | |
| TAATGAAGCCTATCACCAAT+TGG | + | chr1_3:17261531-17261550 | Msa0107250:intron | 35.0% | |
| TAAGCCCGAAGAAATAGATA+TGG | - | chr1_3:17261673-17261692 | None:intergenic | 35.0% | |
| GTTTCTTCTCAATTTAGCTG+AGG | + | chr1_3:17261849-17261868 | Msa0107250:intron | 35.0% | |
| !! | CTAGATAAATTTGATGGTGG+TGG | - | chr1_3:17261991-17262010 | None:intergenic | 35.0% |
| !!! | GACTTGAGCATTACGTTTTT+TGG | - | chr1_3:17262194-17262213 | None:intergenic | 35.0% |
| TTAAATCACACTTCATTCGG+GGG | - | chr1_3:17262296-17262315 | None:intergenic | 35.0% | |
| CTTAAATCACACTTCATTCG+GGG | - | chr1_3:17262297-17262316 | None:intergenic | 35.0% | |
| ! | TATCTTGTCTAAGGTTCAGA+TGG | - | chr1_3:17262344-17262363 | None:intergenic | 35.0% |
| TACCATTCTTGATGAGTATG+TGG | + | chr1_3:17262676-17262695 | Msa0107250:intron | 35.0% | |
| ATCCACATACTCATCAAGAA+TGG | - | chr1_3:17262681-17262700 | None:intergenic | 35.0% | |
| ATAAAACTCAGGTAAGTTGC+TGG | + | chr1_3:17262907-17262926 | Msa0107250:intron | 35.0% | |
| GGAAATGAAGTGAATCAAAG+TGG | - | chr1_3:17263181-17263200 | None:intergenic | 35.0% | |
| TGTTGTGAGACTATTTGGAA+GGG | - | chr1_3:17263273-17263292 | None:intergenic | 35.0% | |
| TTGTTGTGAGACTATTTGGA+AGG | - | chr1_3:17263274-17263293 | None:intergenic | 35.0% | |
| ACAACAAGTGCTTATGTTAG+TGG | + | chr1_3:17263287-17263306 | Msa0107250:intron | 35.0% | |
| !! | GTGTGATATTGGTAATGATG+TGG | - | chr1_3:17263650-17263669 | None:intergenic | 35.0% |
| ATCAAATGCCAAATGGGTAG+TGG | + | chr1_3:17255502-17255521 | Msa0107250:five_prime_UTR | 40.0% | |
| TGTGTGGGAAGAATAATTGG+TGG | - | chr1_3:17255551-17255570 | None:intergenic | 40.0% | |
| GAAGAGAAAGAAAACCCAGA+TGG | - | chr1_3:17255863-17255882 | None:intergenic | 40.0% | |
| ! | CTGGGTTTTCTTTCTCTTCA+AGG | + | chr1_3:17255864-17255883 | Msa0107250:five_prime_UTR | 40.0% |
| ! | TCTGGGATGATGATGTATTC+GGG | + | chr1_3:17256187-17256206 | Msa0107250:CDS | 40.0% |
| ATGATGTATTCGGGGAATTC+AGG | + | chr1_3:17256196-17256215 | Msa0107250:CDS | 40.0% | |
| TCGTCTGTTATAAGTCAACC+GGG | + | chr1_3:17256235-17256254 | Msa0107250:CDS | 40.0% | |
| ATTGAAGCATGATGCAGGTT+TGG | + | chr1_3:17256300-17256319 | Msa0107250:CDS | 40.0% | |
| TCAGTCACTTGACATGACAT+TGG | + | chr1_3:17256438-17256457 | Msa0107250:intron | 40.0% | |
| ATTGTAACCACATGTGTCGT+TGG | + | chr1_3:17256502-17256521 | Msa0107250:intron | 40.0% | |
| ! | TTGTAACCACATGTGTCGTT+GGG | + | chr1_3:17256503-17256522 | Msa0107250:intron | 40.0% |
| ATTGCTGCTGCATAGTAACT+TGG | + | chr1_3:17256615-17256634 | Msa0107250:intron | 40.0% | |
| GCTGCATAGTAACTTGGTTT+CGG | + | chr1_3:17256621-17256640 | Msa0107250:intron | 40.0% | |
| ACAACTCTTAGAATCTGGGT+TGG | + | chr1_3:17256734-17256753 | Msa0107250:intron | 40.0% | |
| CCTTACAAACTGGTATCGTA+GGG | - | chr1_3:17256771-17256790 | None:intergenic | 40.0% | |
| TCCTTACAAACTGGTATCGT+AGG | - | chr1_3:17256772-17256791 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1_3:17256832-17256851 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr1_3:17257018-17257037 | None:intergenic | 40.0% | |
| AAAATGTACTACCTTCGTCC+CGG | - | chr1_3:17257037-17257056 | None:intergenic | 40.0% | |
| !! | TCCTACATAATCGGCTTGTA+AGG | + | chr1_3:17257215-17257234 | Msa0107250:intron | 40.0% |
| ACCTTACAAGCCGATTATGT+AGG | - | chr1_3:17257219-17257238 | None:intergenic | 40.0% | |
| GCCAAAATGGGTGAGATATA+GGG | - | chr1_3:17257278-17257297 | None:intergenic | 40.0% | |
| CAAAGCTTTCAGGCCAAAAT+GGG | - | chr1_3:17257290-17257309 | None:intergenic | 40.0% | |
| ACAAAGCTTTCAGGCCAAAA+TGG | - | chr1_3:17257291-17257310 | None:intergenic | 40.0% | |
| ACTGTAGTTAGACAACACTG+TGG | - | chr1_3:17257326-17257345 | None:intergenic | 40.0% | |
| TTATGCTCTTTGCGTCTTTC+TGG | + | chr1_3:17257703-17257722 | Msa0107250:intron | 40.0% | |
| GGTTCCATAAACAAAGATGG+AGG | - | chr1_3:17258071-17258090 | None:intergenic | 40.0% | |
| TGCGGTTCCATAAACAAAGA+TGG | - | chr1_3:17258074-17258093 | None:intergenic | 40.0% | |
| ! | TAGACGGAAAAGCACATATG+CGG | - | chr1_3:17258092-17258111 | None:intergenic | 40.0% |
| GACTCCAAGCACATTATAGA+GGG | + | chr1_3:17258202-17258221 | Msa0107250:intron | 40.0% | |
| GAATCCCTCTATAATGTGCT+TGG | - | chr1_3:17258209-17258228 | None:intergenic | 40.0% | |
| ! | ATGCCAAGCTTTTTGTCACA+CGG | + | chr1_3:17258521-17258540 | Msa0107250:intron | 40.0% |
| AAACCGTGTGACAAAAAGCT+TGG | - | chr1_3:17258527-17258546 | None:intergenic | 40.0% | |
| CCATGAAAGAGGGCAAAAAA+AGG | - | chr1_3:17258617-17258636 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTTGCCCTCTTTCA+TGG | + | chr1_3:17258614-17258633 | Msa0107250:intron | 40.0% |
| TTGAATGGGGAAAAGTGGTA+AGG | - | chr1_3:17258928-17258947 | None:intergenic | 40.0% | |
| ! | CACTTTTGAATGGGGAAAAG+TGG | - | chr1_3:17258933-17258952 | None:intergenic | 40.0% |
| GCACCTCAAAGTATGCATAT+AGG | + | chr1_3:17259043-17259062 | Msa0107250:intron | 40.0% | |
| ! | AAGGAAATCAGAAGAGCACA+TGG | + | chr1_3:17259104-17259123 | Msa0107250:CDS | 40.0% |
| GGTACATGAAATTAGGAAGC+TGG | + | chr1_3:17259149-17259168 | Msa0107250:intron | 40.0% | |
| GTGGAGAAAAATGCAGTTCA+AGG | + | chr1_3:17259408-17259427 | Msa0107250:intron | 40.0% | |
| CTGACATCCTAGACATGAAT+TGG | - | chr1_3:17259654-17259673 | None:intergenic | 40.0% | |
| CTAAAGAGGAGTCATGTTCA+TGG | - | chr1_3:17259713-17259732 | None:intergenic | 40.0% | |
| TCTTCTTCAGGATAAGCCAA+TGG | + | chr1_3:17259800-17259819 | Msa0107250:intron | 40.0% | |
| !! | TGCTTTGGTGATGAAACCAT+TGG | - | chr1_3:17259819-17259838 | None:intergenic | 40.0% |
| ATGTGATACACACGAATACG+TGG | - | chr1_3:17259874-17259893 | None:intergenic | 40.0% | |
| TTCGTGTGTATCACATCCTA+TGG | + | chr1_3:17259878-17259897 | Msa0107250:CDS | 40.0% | |
| ATCCTATGGACAGAAGTCAA+CGG | + | chr1_3:17259892-17259911 | Msa0107250:CDS | 40.0% | |
| TTTGTTAATGCGAATTGCGG+TGG | + | chr1_3:17260093-17260112 | Msa0107250:intron | 40.0% | |
| ! | ACTGCCATGCCAATTTTTGA+CGG | + | chr1_3:17260130-17260149 | Msa0107250:intron | 40.0% |
| CCGTCATATCCGTCAAAAAT+TGG | - | chr1_3:17260142-17260161 | None:intergenic | 40.0% | |
| ! | TTTTGGGCCAATGTTATCGA+TGG | - | chr1_3:17260210-17260229 | None:intergenic | 40.0% |
| TCTAAAGGATGGAGAAAGCA+AGG | + | chr1_3:17260259-17260278 | Msa0107250:intron | 40.0% | |
| ! | TTGACCAGTTGCAAGTCTTT+TGG | + | chr1_3:17260401-17260420 | Msa0107250:intron | 40.0% |
| ! | TGACCAGTTGCAAGTCTTTT+GGG | + | chr1_3:17260402-17260421 | Msa0107250:intron | 40.0% |
| ATCAGCAAAAACACCTGGAT+AGG | - | chr1_3:17260856-17260875 | None:intergenic | 40.0% | |
| GAATTCCCTTGAGCTTCTAA+AGG | + | chr1_3:17261041-17261060 | Msa0107250:intron | 40.0% | |
| ! | AGTGCAATGAAGTACTTGAC+CGG | - | chr1_3:17261160-17261179 | None:intergenic | 40.0% |
| GTTAGGACTGAGAGAAAGTT+AGG | - | chr1_3:17261196-17261215 | None:intergenic | 40.0% | |
| CAGAACCGATCAAACTGAAA+AGG | - | chr1_3:17261232-17261251 | None:intergenic | 40.0% | |
| GATTGGAGATCATGTACTTG+AGG | - | chr1_3:17261279-17261298 | None:intergenic | 40.0% | |
| GATTCCAAAAGTCCTTCTTC+TGG | + | chr1_3:17261315-17261334 | Msa0107250:intron | 40.0% | |
| ! | GAATCCAGAAGAAGGACTTT+TGG | - | chr1_3:17261322-17261341 | None:intergenic | 40.0% |
| GATGATCAGAATCCAGAAGA+AGG | - | chr1_3:17261330-17261349 | None:intergenic | 40.0% | |
| TGTCAACCATGTCACAAGTA+TGG | + | chr1_3:17261923-17261942 | Msa0107250:intron | 40.0% | |
| GTATGACCATACTTGTGACA+TGG | - | chr1_3:17261932-17261951 | None:intergenic | 40.0% | |
| CATACTGCTTACGTTGTCAT+TGG | + | chr1_3:17261947-17261966 | Msa0107250:intron | 40.0% | |
| !! | GATAAATTTGATGGTGGTGG+AGG | - | chr1_3:17261988-17262007 | None:intergenic | 40.0% |
| ! | TGCTCAGTTAGCTTATAACC+AGG | + | chr1_3:17262092-17262111 | Msa0107250:intron | 40.0% |
| GATCCAATACTGACAGTTAG+AGG | - | chr1_3:17262135-17262154 | None:intergenic | 40.0% | |
| ! | TCAGTATTGGATCCAGATCT+GGG | + | chr1_3:17262142-17262161 | Msa0107250:intron | 40.0% |
| ATGTTGGAACTTTGGCTACA+AGG | - | chr1_3:17262231-17262250 | None:intergenic | 40.0% | |
| GAGTGCAAATGTTGGAACTT+TGG | - | chr1_3:17262239-17262258 | None:intergenic | 40.0% | |
| TTGATCAGAAAAAGGCCAAG+TGG | - | chr1_3:17262271-17262290 | None:intergenic | 40.0% | |
| TAAATCACACTTCATTCGGG+GGG | - | chr1_3:17262295-17262314 | None:intergenic | 40.0% | |
| TAGCTAGGGATACACAGTAA+AGG | + | chr1_3:17262393-17262412 | Msa0107250:intron | 40.0% | |
| ! | AGCATTTGGCTCATTATACC+AGG | - | chr1_3:17262837-17262856 | None:intergenic | 40.0% |
| !! | GCACTTGTTGTGAGACTATT+TGG | - | chr1_3:17263278-17263297 | None:intergenic | 40.0% |
| CTTTGAGTAGGCAATCTTGA+TGG | - | chr1_3:17263555-17263574 | None:intergenic | 40.0% | |
| TCAAGATTGCCTACTCAAAG+TGG | + | chr1_3:17263555-17263574 | Msa0107250:CDS | 40.0% | |
| TACACTTGTCCACTTTGAGT+AGG | - | chr1_3:17263567-17263586 | None:intergenic | 40.0% | |
| ! | TGTAGAGAGGTTGGCATTTT+TGG | + | chr1_3:17263583-17263602 | Msa0107250:CDS | 40.0% |
| ! | GGTGTGGAAGTCAATTGTTT+TGG | + | chr1_3:17263604-17263623 | Msa0107250:CDS | 40.0% |
| !!! | TCAATTGTTTTGGTGCTGCA+TGG | + | chr1_3:17263614-17263633 | Msa0107250:CDS | 40.0% |
| !!! | CAATTGTTTTGGTGCTGCAT+GGG | + | chr1_3:17263615-17263634 | Msa0107250:CDS | 40.0% |
| ACTCCGGAATAGTGTGATAT+TGG | - | chr1_3:17263661-17263680 | None:intergenic | 40.0% | |
| ! | TGTTAGTAGCTTGCCTGAGA+TGG | + | chr1_3:17256126-17256145 | Msa0107250:CDS | 45.0% |
| TTGCCTGAGATGGTTCCAAT+GGG | + | chr1_3:17256136-17256155 | Msa0107250:CDS | 45.0% | |
| TTTCCCATTGGAACCATCTC+AGG | - | chr1_3:17256142-17256161 | None:intergenic | 45.0% | |
| ! | CTGGGATGATGATGTATTCG+GGG | + | chr1_3:17256188-17256207 | Msa0107250:CDS | 45.0% |
| ! | GGAATTCAGGCGTTGTTAGT+AGG | + | chr1_3:17256209-17256228 | Msa0107250:CDS | 45.0% |
| CGTCTGTTATAAGTCAACCG+GGG | + | chr1_3:17256236-17256255 | Msa0107250:CDS | 45.0% | |
| !! | CTTCTTGTTGATTCTGTGCC+TGG | + | chr1_3:17256277-17256296 | Msa0107250:CDS | 45.0% |
| ! | ATTGAAGGCATGTCTGACAC+CGG | + | chr1_3:17256536-17256555 | Msa0107250:intron | 45.0% |
| ! | CTTCACATTGAAGGTGTGTC+CGG | - | chr1_3:17256558-17256577 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCACATTGA+AGG | - | chr1_3:17256567-17256586 | None:intergenic | 45.0% |
| TGGTATCGTAGGGTTGAGTT+AGG | - | chr1_3:17256761-17256780 | None:intergenic | 45.0% | |
| CCCTACGATACCAGTTTGTA+AGG | + | chr1_3:17256768-17256787 | Msa0107250:intron | 45.0% | |
| CGATACCAGTTTGTAAGGAG+AGG | + | chr1_3:17256773-17256792 | Msa0107250:intron | 45.0% | |
| GTAGTCCTCTCCTTACAAAC+TGG | - | chr1_3:17256781-17256800 | None:intergenic | 45.0% | |
| TATAAATACTCCCTCCGTCC+CGG | + | chr1_3:17256811-17256830 | Msa0107250:intron | 45.0% | |
| CACTCTAGATGTCCAGACTT+GGG | - | chr1_3:17257108-17257127 | None:intergenic | 45.0% | |
| ACACTCTAGATGTCCAGACT+TGG | - | chr1_3:17257109-17257128 | None:intergenic | 45.0% | |
| TAACCCGCTATCAGCTTACT+CGG | - | chr1_3:17257135-17257154 | None:intergenic | 45.0% | |
| !! | CATAATCGGCTTGTAAGGTG+AGG | + | chr1_3:17257220-17257239 | Msa0107250:intron | 45.0% |
| ! | GCCCTATATCTCACCCATTT+TGG | + | chr1_3:17257274-17257293 | Msa0107250:intron | 45.0% |
| GGCCAAAATGGGTGAGATAT+AGG | - | chr1_3:17257279-17257298 | None:intergenic | 45.0% | |
| ! | TCTTTGCGTCTTTCTGGTGT+TGG | + | chr1_3:17257709-17257728 | Msa0107250:intron | 45.0% |
| GGAGAACTAGAAATGCAGCA+AGG | - | chr1_3:17257782-17257801 | None:intergenic | 45.0% | |
| CGACTCCAAGCACATTATAG+AGG | + | chr1_3:17258201-17258220 | Msa0107250:intron | 45.0% | |
| CCACTATAGCGCCAAAATAG+TGG | - | chr1_3:17258325-17258344 | None:intergenic | 45.0% | |
| !!! | CCACTATTTTGGCGCTATAG+TGG | + | chr1_3:17258322-17258341 | Msa0107250:intron | 45.0% |
| TATAGTGGCTGCTAATGCTG+TGG | + | chr1_3:17258337-17258356 | Msa0107250:intron | 45.0% | |
| AGCAGAGCAGTTTCACATAG+TGG | - | chr1_3:17258363-17258382 | None:intergenic | 45.0% | |
| GCATGTCTAGCCATGAAAGA+GGG | - | chr1_3:17258627-17258646 | None:intergenic | 45.0% | |
| AGCATGTCTAGCCATGAAAG+AGG | - | chr1_3:17258628-17258647 | None:intergenic | 45.0% | |
| CTGATGAGCCAAGTATCATG+AGG | + | chr1_3:17258646-17258665 | Msa0107250:CDS | 45.0% | |
| !! | CTGTTCGTGATGTTGCTTTG+AGG | + | chr1_3:17258703-17258722 | Msa0107250:CDS | 45.0% |
| !! | GTGATGTTGCTTTGAGGTGT+AGG | + | chr1_3:17258709-17258728 | Msa0107250:CDS | 45.0% |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | + | chr1_3:17258712-17258731 | Msa0107250:CDS | 45.0% |
| TGGGGAAAAGTGGTAAGGTA+AGG | - | chr1_3:17258923-17258942 | None:intergenic | 45.0% | |
| CCTTCGCTTTCTCTGCAAAA+TGG | - | chr1_3:17259088-17259107 | None:intergenic | 45.0% | |
| ! | CCATTTTGCAGAGAAAGCGA+AGG | + | chr1_3:17259085-17259104 | Msa0107250:intron | 45.0% |
| !! | ATCCGTTGACTTCTGTCCAT+AGG | - | chr1_3:17259897-17259916 | None:intergenic | 45.0% |
| CTACCCAAAAGACTTGCAAC+TGG | - | chr1_3:17260408-17260427 | None:intergenic | 45.0% | |
| !! | CAGTTGCAAGTCTTTTGGGT+AGG | + | chr1_3:17260406-17260425 | Msa0107250:intron | 45.0% |
| ATGGGACATTGTACCTATCC+AGG | + | chr1_3:17260840-17260859 | Msa0107250:intron | 45.0% | |
| ! | GTGAGCCTTTAGAAGCTCAA+GGG | - | chr1_3:17261049-17261068 | None:intergenic | 45.0% |
| ! | AGTGAGCCTTTAGAAGCTCA+AGG | - | chr1_3:17261050-17261069 | None:intergenic | 45.0% |
| AATGCATGAGGCTGCATACA+GGG | - | chr1_3:17261593-17261612 | None:intergenic | 45.0% | |
| TAATGCATGAGGCTGCATAC+AGG | - | chr1_3:17261594-17261613 | None:intergenic | 45.0% | |
| TCATGGCAACTTGTCAAGTG+TGG | + | chr1_3:17261641-17261660 | Msa0107250:intron | 45.0% | |
| CATGGCAACTTGTCAAGTGT+GGG | + | chr1_3:17261642-17261661 | Msa0107250:intron | 45.0% | |
| TTTAGCTGAGGATGTGAACG+TGG | + | chr1_3:17261861-17261880 | Msa0107250:intron | 45.0% | |
| ! | CAGGGTGCTTCGTAAATGTT+TGG | - | chr1_3:17262024-17262043 | None:intergenic | 45.0% |
| ! | CAAACATTTACGAAGCACCC+TGG | + | chr1_3:17262022-17262041 | Msa0107250:intron | 45.0% |
| GCATCCTATACAAGAGACCA+GGG | - | chr1_3:17262042-17262061 | None:intergenic | 45.0% | |
| AGCATCCTATACAAGAGACC+AGG | - | chr1_3:17262043-17262062 | None:intergenic | 45.0% | |
| TACTGACAGTTAGAGGACCT+TGG | - | chr1_3:17262128-17262147 | None:intergenic | 45.0% | |
| GGTCCTCTAACTGTCAGTAT+TGG | + | chr1_3:17262129-17262148 | Msa0107250:intron | 45.0% | |
| ! | GTCAGTATTGGATCCAGATC+TGG | + | chr1_3:17262141-17262160 | Msa0107250:intron | 45.0% |
| TGATATGAAGCTCCCAGATC+TGG | - | chr1_3:17262157-17262176 | None:intergenic | 45.0% | |
| CTACAAGGCCATTGCTACTA+GGG | - | chr1_3:17262216-17262235 | None:intergenic | 45.0% | |
| GCATCGTAGAGTGCAAATGT+TGG | - | chr1_3:17262247-17262266 | None:intergenic | 45.0% | |
| !! | ACACAGGAAGTGGAAGCATT+TGG | - | chr1_3:17262851-17262870 | None:intergenic | 45.0% |
| CAAAGTGGACAAGTGTAGAG+AGG | + | chr1_3:17263570-17263589 | Msa0107250:CDS | 45.0% | |
| !!! | AGAGGTTGGCATTTTTGGTG+TGG | + | chr1_3:17263588-17263607 | Msa0107250:CDS | 45.0% |
| !!! | TTTATTTGTTTTTTTATATA+TGG | + | chr1_3:17255717-17255736 | Msa0107250:intron | 5.0% |
| GGTGGTTATAGTGAGTGCAG+TGG | - | chr1_3:17255533-17255552 | None:intergenic | 50.0% | |
| CTTGCCTGAGATGGTTCCAA+TGG | + | chr1_3:17256135-17256154 | Msa0107250:CDS | 50.0% | |
| CCTGCATCATGCTTCAATCC+AGG | - | chr1_3:17256298-17256317 | None:intergenic | 50.0% | |
| CCTGGATTGAAGCATGATGC+AGG | + | chr1_3:17256295-17256314 | Msa0107250:CDS | 50.0% | |
| ! | AACCACATGTGTCGTTGGGT+CGG | + | chr1_3:17256507-17256526 | Msa0107250:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1_3:17256828-17256847 | None:intergenic | 50.0% | |
| GGTCAATTATACCGGGACGA+AGG | + | chr1_3:17257023-17257042 | Msa0107250:intron | 50.0% | |
| ACTCTTCTCAAGCCCAAGTC+TGG | + | chr1_3:17257093-17257112 | Msa0107250:intron | 50.0% | |
| TGACCCGAGTAAGCTGATAG+CGG | + | chr1_3:17257128-17257147 | Msa0107250:intron | 50.0% | |
| AACCCGCTATCAGCTTACTC+GGG | - | chr1_3:17257134-17257153 | None:intergenic | 50.0% | |
| !! | ATCCCAGATAGCGGAAGAAG+TGG | + | chr1_3:17258177-17258196 | Msa0107250:intron | 50.0% |
| GACCACTTCTTCCGCTATCT+GGG | - | chr1_3:17258182-17258201 | None:intergenic | 50.0% | |
| ! | AGCTGCGGCATCCACTATTT+TGG | + | chr1_3:17258311-17258330 | Msa0107250:intron | 50.0% |
| TGCTACAGCATGTCCTGTAG+AGG | + | chr1_3:17258379-17258398 | Msa0107250:intron | 50.0% | |
| ACTGGCTGCATACACTGCTT+TGG | - | chr1_3:17259834-17259853 | None:intergenic | 50.0% | |
| ACGAATACGTGGCCACACTT+GGG | - | chr1_3:17259863-17259882 | None:intergenic | 50.0% | |
| ACGGATATGACGGCGTCATA+TGG | + | chr1_3:17260149-17260168 | Msa0107250:intron | 50.0% | |
| GATATGACGGCGTCATATGG+CGG | + | chr1_3:17260152-17260171 | Msa0107250:intron | 50.0% | |
| !! | CCAATGTTATCGATGGCGGA+TGG | - | chr1_3:17260203-17260222 | None:intergenic | 50.0% |
| CCATCCGCCATCGATAACAT+TGG | + | chr1_3:17260200-17260219 | Msa0107250:intron | 50.0% | |
| TGGGCCAATGTTATCGATGG+CGG | - | chr1_3:17260207-17260226 | None:intergenic | 50.0% | |
| !! | GCAAGTCTTTTGGGTAGGCT+AGG | + | chr1_3:17260411-17260430 | Msa0107250:intron | 50.0% |
| TTGCTCCAAGAGTCGCTTCA+CGG | - | chr1_3:17260623-17260642 | None:intergenic | 50.0% | |
| CGGCGTAGCCTAAAAGTGAT+TGG | - | chr1_3:17261296-17261315 | None:intergenic | 50.0% | |
| AACTACCTGCTGTGTCGAAG+TGG | + | chr1_3:17261432-17261451 | Msa0107250:intron | 50.0% | |
| TGCATACAGGGAGAGAAGCT+AGG | - | chr1_3:17261581-17261600 | None:intergenic | 50.0% | |
| TTACTGGATGCACTCGCTCA+TGG | + | chr1_3:17261624-17261643 | Msa0107250:intron | 50.0% | |
| AGCACCCTGGTCTCTTGTAT+AGG | + | chr1_3:17262035-17262054 | Msa0107250:intron | 50.0% | |
| TGACAGTTAGAGGACCTTGG+AGG | - | chr1_3:17262125-17262144 | None:intergenic | 50.0% | |
| GCTCAAGTCCCTAGTAGCAA+TGG | + | chr1_3:17262205-17262224 | Msa0107250:intron | 50.0% | |
| GCTACAAGGCCATTGCTACT+AGG | - | chr1_3:17262217-17262236 | None:intergenic | 50.0% | |
| CGGGGGGATTGATCAGAAAA+AGG | - | chr1_3:17262279-17262298 | None:intergenic | 50.0% | |
| CGCAAGCTTAGAGGCCAAAA+AGG | - | chr1_3:17262582-17262601 | None:intergenic | 50.0% | |
| GATCGCTATCGCAAGCTTAG+AGG | - | chr1_3:17262591-17262610 | None:intergenic | 50.0% | |
| TCGACCTCTTCAGTCAGACA+CGG | + | chr1_3:17262642-17262661 | Msa0107250:CDS | 50.0% | |
| TCGTCAATCGACACAGGAAG+TGG | - | chr1_3:17262861-17262880 | None:intergenic | 50.0% | |
| !! | ACTTCCTGTGTCGATTGACG+AGG | + | chr1_3:17262860-17262879 | Msa0107250:CDS | 50.0% |
| GTGGACAAGTGTAGAGAGGT+TGG | + | chr1_3:17263574-17263593 | Msa0107250:CDS | 50.0% | |
| !! | TTTGGTGCTGCATGGGATTG+AGG | + | chr1_3:17263622-17263641 | Msa0107250:CDS | 50.0% |
| ! | TGGCAGTGCCACTACCCATT+TGG | - | chr1_3:17255513-17255532 | None:intergenic | 55.0% |
| ATGCAGGTTTGGCTGCTGAG+TGG | + | chr1_3:17256311-17256330 | Msa0107250:CDS | 55.0% | |
| TACCGACCCAACGACACATG+TGG | - | chr1_3:17256512-17256531 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1_3:17256824-17256843 | None:intergenic | 55.0% | |
| GACCCGAGTAAGCTGATAGC+GGG | + | chr1_3:17257129-17257148 | Msa0107250:intron | 55.0% | |
| CGACCACTTCTTCCGCTATC+TGG | - | chr1_3:17258183-17258202 | None:intergenic | 55.0% | |
| GTATGGCACTGTAGCAGCTG+CGG | + | chr1_3:17258296-17258315 | Msa0107250:intron | 55.0% | |
| AGCATGTCCTGTAGAGGCCA+GGG | + | chr1_3:17258385-17258404 | Msa0107250:intron | 55.0% | |
| ! | ATAGCGGAGCTATAGCGCTG+TGG | - | chr1_3:17258420-17258439 | None:intergenic | 55.0% |
| ! | GCCAGTTCTAACCCCAAGTG+TGG | + | chr1_3:17259848-17259867 | Msa0107250:CDS | 55.0% |
| GCCACACTTGGGGTTAGAAC+TGG | - | chr1_3:17259852-17259871 | None:intergenic | 55.0% | |
| CGAATACGTGGCCACACTTG+GGG | - | chr1_3:17259862-17259881 | None:intergenic | 55.0% | |
| CACGAATACGTGGCCACACT+TGG | - | chr1_3:17259864-17259883 | None:intergenic | 55.0% | |
| !!! | GGCGTCATATGGCGGACTTT+TGG | + | chr1_3:17260160-17260179 | Msa0107250:intron | 55.0% |
| !!! | GGACTTTTGGCTTTCCGCCA+TGG | + | chr1_3:17260173-17260192 | Msa0107250:intron | 55.0% |
| TGATCCCGTGAAGCGACTCT+TGG | + | chr1_3:17260615-17260634 | Msa0107250:CDS | 55.0% | |
| TGCTCCAAGAGTCGCTTCAC+GGG | - | chr1_3:17260622-17260641 | None:intergenic | 55.0% | |
| TGAGGATGTGAACGTGGCTG+CGG | + | chr1_3:17261867-17261886 | Msa0107250:CDS | 55.0% | |
| AACCAGGTCTTGCTCCTCCA+AGG | + | chr1_3:17262108-17262127 | Msa0107250:intron | 55.0% | |
| GCACTCTACGATGCTCCACT+TGG | + | chr1_3:17262253-17262272 | Msa0107250:intron | 55.0% | |
| TGTGCCGTGTCTGACTGAAG+AGG | - | chr1_3:17262649-17262668 | None:intergenic | 55.0% | |
| TGCAGCATGAGAGCAATGCC+TGG | + | chr1_3:17262816-17262835 | Msa0107250:intron | 55.0% | |
| AGGTCCTCGTCAATCGACAC+AGG | - | chr1_3:17262867-17262886 | None:intergenic | 55.0% | |
| AGTCAACCGGGGATTGCGTC+TGG | + | chr1_3:17256247-17256266 | Msa0107250:CDS | 60.0% | |
| GAACAGCCAGACGCAATCCC+CGG | - | chr1_3:17256256-17256275 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1_3:17256825-17256844 | None:intergenic | 60.0% | |
| CAGCATGTCCTGTAGAGGCC+AGG | + | chr1_3:17258384-17258403 | Msa0107250:intron | 60.0% | |
| GCATGTCCTGTAGAGGCCAG+GGG | + | chr1_3:17258386-17258405 | Msa0107250:intron | 60.0% | |
| TTGGGTAGGCTAGGCCCCTA+AGG | + | chr1_3:17260420-17260439 | Msa0107250:intron | 60.0% | |
| GAGGACCACTTCGACACAGC+AGG | - | chr1_3:17261440-17261459 | None:intergenic | 60.0% | |
| GACCTTGGAGGAGCAAGACC+TGG | - | chr1_3:17262113-17262132 | None:intergenic | 60.0% | |
| ! | TGGCGGATGGCAGACCATGG+CGG | - | chr1_3:17260190-17260209 | None:intergenic | 65.0% |
| !! | CGATGGCGGATGGCAGACCA+TGG | - | chr1_3:17260193-17260212 | None:intergenic | 65.0% |
| TGTGAACGTGGCTGCGGCAG+AGG | + | chr1_3:17261873-17261892 | Msa0107250:CDS | 65.0% | |
| CTGCGGCAGAGGTCATGGTC+AGG | + | chr1_3:17261884-17261903 | Msa0107250:CDS | 65.0% | |
| CGGCAGAGGTCATGGTCAGG+TGG | + | chr1_3:17261887-17261906 | Msa0107250:CDS | 65.0% | |
| GAGCGACCCCTGGCCTCTAC+AGG | - | chr1_3:17258395-17258414 | None:intergenic | 70.0% | |
| CGCTGTGGTTGAGCGACCCC+TGG | - | chr1_3:17258405-17258424 | None:intergenic | 70.0% | |
| CGTGGCTGCGGCAGAGGTCA+TGG | + | chr1_3:17261879-17261898 | Msa0107250:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17255447 | 17263697 | 17255447 | ID=Msa0107250;Name=Msa0107250 |
| chr1_3 | mRNA | 17255447 | 17263697 | 17255447 | ID=Msa0107250-mRNA-1;Parent=Msa0107250;Name=Msa0107250-mRNA-1;_AED=0.23;_eAED=0.24;_QI=368|0.6|0.72|0.81|0.9|0.81|11|0|401 |
| chr1_3 | exon | 17255447 | 17255628 | 17255447 | ID=Msa0107250-mRNA-1:exon:6530;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17255851 | 17256374 | 17255851 | ID=Msa0107250-mRNA-1:exon:6531;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17258641 | 17258740 | 17258641 | ID=Msa0107250-mRNA-1:exon:6532;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17259096 | 17259149 | 17259096 | ID=Msa0107250-mRNA-1:exon:6533;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17259810 | 17259930 | 17259810 | ID=Msa0107250-mRNA-1:exon:6534;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17260608 | 17260690 | 17260608 | ID=Msa0107250-mRNA-1:exon:6535;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17261042 | 17261159 | 17261042 | ID=Msa0107250-mRNA-1:exon:6536;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17261866 | 17261939 | 17261866 | ID=Msa0107250-mRNA-1:exon:6537;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17262629 | 17262690 | 17262629 | ID=Msa0107250-mRNA-1:exon:6538;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17262821 | 17262917 | 17262821 | ID=Msa0107250-mRNA-1:exon:6539;Parent=Msa0107250-mRNA-1 |
| chr1_3 | exon | 17263539 | 17263697 | 17263539 | ID=Msa0107250-mRNA-1:exon:6540;Parent=Msa0107250-mRNA-1 |
| chr1_3 | five_prime_UTR | 17255447 | 17255628 | 17255447 | ID=Msa0107250-mRNA-1:five_prime_utr;Parent=Msa0107250-mRNA-1 |
| chr1_3 | five_prime_UTR | 17255851 | 17256036 | 17255851 | ID=Msa0107250-mRNA-1:five_prime_utr;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17256037 | 17256374 | 17256037 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17258641 | 17258740 | 17258641 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17259096 | 17259149 | 17259096 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17259810 | 17259930 | 17259810 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17260608 | 17260690 | 17260608 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17261042 | 17261159 | 17261042 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17261866 | 17261939 | 17261866 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17262629 | 17262690 | 17262629 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17262821 | 17262917 | 17262821 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| chr1_3 | CDS | 17263539 | 17263697 | 17263539 | ID=Msa0107250-mRNA-1:cds;Parent=Msa0107250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
