AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712980 MtrunA17_Chr8g0369431 96.532 173 6 0 1 173 1 173 1.37e-122 343
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712980 AT4G19070.2 52.841 176 69 3 1 176 1 162 2.11e-56 176
Msa0712980 AT4G19070.1 52.841 176 69 3 1 176 4 165 2.13e-56 176

Find 59 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCTTGTGGTCATCTTTC+TGG 0.048652 5_1:+4892109 Msa0712980:CDS
GTTCTAATAATGATTATAAA+AGG 0.238226 5_1:+4890998 Msa0712980:exon
GGTATTACTCTTGTTGGTTT+TGG 0.257108 5_1:+4891181 Msa0712980:CDS
TGTGGTGTTGGATGGGGTCC+TGG 0.292274 5_1:+4891100 Msa0712980:CDS
ATCTTTGCAGCTCCTTATAA+TGG 0.296519 5_1:+4891226 Msa0712980:CDS
GTTGGATGGGGTCCTGGATT+TGG 0.298350 5_1:+4891106 Msa0712980:CDS
CACAAGCCTCAGGGGATGTT+TGG 0.315024 5_1:+4892134 Msa0712980:CDS
GCGAAAACTGAAATTGAGTT+TGG 0.315076 5_1:-4890779 None:intergenic
AACCCTGTTCATCCAACTTA+TGG 0.315421 5_1:+4891046 Msa0712980:CDS
CTTTACGAGGGCTGAATAAC+TGG 0.320207 5_1:-4892324 None:intergenic
AATGTTGGTATTACTCTTGT+TGG 0.334297 5_1:+4891175 Msa0712980:CDS
GCTCCATAAGTTGGATGAAC+AGG 0.342945 5_1:-4891049 None:intergenic
AAAAGAGGCATACCATTATA+AGG 0.353748 5_1:-4891238 None:intergenic
CGTTGGTTGTGGTGTTGGAT+GGG 0.354052 5_1:+4891093 Msa0712980:CDS
TTCGGCGTTGGTTGTGGTGT+TGG 0.368268 5_1:+4891088 Msa0712980:CDS
GCGTTGGTTGTGGTGTTGGA+TGG 0.382518 5_1:+4891092 Msa0712980:CDS
CCTGAAGTTGTTGGCTATGT+TGG 0.398231 5_1:+4891130 Msa0712980:CDS
CCAACATAGCCAACAACTTC+AGG 0.400009 5_1:-4891130 None:intergenic
CTTTCTGGTCCACAAGCCTC+AGG 0.405935 5_1:+4892124 Msa0712980:CDS
ATGGGTTTCGGCGTTGGTTG+TGG 0.411499 5_1:+4891082 Msa0712980:CDS
CATGAAGAACAGCTTGCCTT+TGG 0.419512 5_1:+4892261 Msa0712980:CDS
TTCCCATTGTGATAGGATCT+AGG 0.428818 5_1:+4892611 Msa0712980:intron
GTTGGAGCTGGTTGTGGCGT+TGG 0.434987 5_1:+4891148 Msa0712980:CDS
GGATTTGGTCCTGAAGTTGT+TGG 0.437390 5_1:+4891121 Msa0712980:CDS
TATGGAATGGGTTTCGGCGT+TGG 0.445305 5_1:+4891076 Msa0712980:CDS
CCATAAAATGCTCCATAAGT+TGG 0.451487 5_1:-4891058 None:intergenic
GTTGTTGGCTATGTTGGAGC+TGG 0.461109 5_1:+4891136 Msa0712980:CDS
GTTGGTTGTGGTGTTGGATG+GGG 0.464756 5_1:+4891094 Msa0712980:CDS
GGCTATGTTGGAGCTGGTTG+TGG 0.466785 5_1:+4891142 Msa0712980:CDS
GAGAGAGAAAGAGAAAGGAT+TGG 0.476218 5_1:-4890748 None:intergenic
TGTTTAGAAGATATGAAAGA+TGG 0.483303 5_1:+4891023 Msa0712980:CDS
AAGCAGAGAGAGAAAGAGAA+AGG 0.512881 5_1:-4890753 None:intergenic
TCCCATTGTGATAGGATCTA+GGG 0.517793 5_1:+4892612 Msa0712980:intron
TCTGACTTTCAAAGAGAAGC+TGG 0.521844 5_1:+4892178 Msa0712980:CDS
GATAGGATCTAGGGAATGGT+TGG 0.528082 5_1:+4892621 Msa0712980:intron
GCTGCAAAGATGACATTAGC+AGG 0.528183 5_1:-4891214 None:intergenic
CAGTTATTCAGCCCTCGTAA+AGG 0.540196 5_1:+4892325 Msa0712980:CDS
TGTGGCGTTGGATTCAATGT+TGG 0.556593 5_1:+4891160 Msa0712980:CDS
ACAACTTCAGGACCAAATCC+AGG 0.557849 5_1:-4891118 None:intergenic
GCGGAATCAGCCTCTAGGTA+AGG 0.560956 5_1:-4892670 None:intergenic
CTAGGTAAGGCTGCCTACGA+TGG 0.566665 5_1:-4892657 None:intergenic
CAAACATCCCCTGAGGCTTG+TGG 0.576117 5_1:-4892133 None:intergenic
CAAAAGTATTTATCAATCAA+CGG 0.579321 5_1:+4892223 Msa0712980:CDS
TTTCTGGTCCACAAGCCTCA+GGG 0.581201 5_1:+4892125 Msa0712980:CDS
AAGTTGCGGAATCAGCCTCT+AGG 0.583109 5_1:-4892675 None:intergenic
TTGAAGTTAGCACGTTCTTG+TGG 0.587715 5_1:+4892097 Msa0712980:CDS
TTGTGATAGGATCTAGGGAA+TGG 0.588970 5_1:+4892617 Msa0712980:intron
CTCCATAAGTTGGATGAACA+GGG 0.608622 5_1:-4891048 None:intergenic
CCAAAATAATACCTTTACGA+GGG 0.610802 5_1:-4892336 None:intergenic
TTCTGGTCCACAAGCCTCAG+GGG 0.613524 5_1:+4892126 Msa0712980:CDS
CTTTGAAAGTCAGACACGGA+AGG 0.618621 5_1:-4892169 None:intergenic
TTCTCTTTGAAAGTCAGACA+CGG 0.624465 5_1:-4892173 None:intergenic
ACCAAAATAATACCTTTACG+AGG 0.635161 5_1:-4892337 None:intergenic
TAGGTCACAGATTCAAGTTG+CGG 0.635911 5_1:-4892689 None:intergenic
CAGGCAGAAGTAGTAACCAA+AGG 0.639806 5_1:-4892277 None:intergenic
GGGAATGGTTGGACTTACTG+TGG 0.643534 5_1:+4892632 Msa0712980:CDS
ACTTACTGTGGATCCATCGT+AGG 0.657372 5_1:+4892644 Msa0712980:CDS
TCGTAGGCAGCCTTACCTAG+AGG 0.711274 5_1:+4892660 Msa0712980:CDS
TCTAATCCAAACATCCCCTG+AGG 0.750357 5_1:-4892140 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGTAATGAAAATAAAA+TGG - chr5_1:4890842-4890861 None:intergenic 10.0%
!!! AATATGATATTTTTAAGTAA+AGG + chr5_1:4891348-4891367 Msa0712980:intron 10.0%
!! AATAAGTAATGAAAATAAAA+TGG - chr5_1:4890842-4890861 None:intergenic 10.0%
!!! AATATGATATTTTTAAGTAA+AGG + chr5_1:4891348-4891367 Msa0712980:intron 10.0%
!! TTTCATTACTTATTATCTTA+AGG + chr5_1:4890848-4890867 Msa0712980:intron 15.0%
!! GTTCTAATAATGATTATAAA+AGG + chr5_1:4890998-4891017 Msa0712980:exon 15.0%
!!! TACATTCTTAAATTATTTTC+AGG - chr5_1:4891417-4891436 None:intergenic 15.0%
!! TTTCATTACTTATTATCTTA+AGG + chr5_1:4890848-4890867 Msa0712980:intron 15.0%
!! GTTCTAATAATGATTATAAA+AGG + chr5_1:4890998-4891017 Msa0712980:exon 15.0%
!!! TACATTCTTAAATTATTTTC+AGG - chr5_1:4891417-4891436 None:intergenic 15.0%
!! AAATATAGAGATTAATGAGT+TGG + chr5_1:4891589-4891608 Msa0712980:intron 20.0%
!! TGGTTTATGATAGAATATTA+TGG + chr5_1:4891621-4891640 Msa0712980:intron 20.0%
!! AGTTCAATTTAGTATGAAAT+TGG + chr5_1:4891886-4891905 Msa0712980:intron 20.0%
!! GTTCAATTTAGTATGAAATT+GGG + chr5_1:4891887-4891906 Msa0712980:intron 20.0%
!!! CAAAAGTATTTATCAATCAA+CGG + chr5_1:4892223-4892242 Msa0712980:CDS 20.0%
!! ATTTATACAAGACAAATACT+AGG - chr5_1:4892394-4892413 None:intergenic 20.0%
!! AGATAGATAAATTGTGAAAA+AGG - chr5_1:4892435-4892454 None:intergenic 20.0%
!! AAATATAGAGATTAATGAGT+TGG + chr5_1:4891589-4891608 Msa0712980:intron 20.0%
!! TGGTTTATGATAGAATATTA+TGG + chr5_1:4891621-4891640 Msa0712980:intron 20.0%
!! AGTTCAATTTAGTATGAAAT+TGG + chr5_1:4891886-4891905 Msa0712980:intron 20.0%
!! GTTCAATTTAGTATGAAATT+GGG + chr5_1:4891887-4891906 Msa0712980:intron 20.0%
!!! CAAAAGTATTTATCAATCAA+CGG + chr5_1:4892223-4892242 Msa0712980:CDS 20.0%
!! ATTTATACAAGACAAATACT+AGG - chr5_1:4892394-4892413 None:intergenic 20.0%
!! AGATAGATAAATTGTGAAAA+AGG - chr5_1:4892435-4892454 None:intergenic 20.0%
!! ACTTATTATCTTAAGGTGTT+TGG + chr5_1:4890855-4890874 Msa0712980:intron 25.0%
! TGTTTAGAAGATATGAAAGA+TGG + chr5_1:4891023-4891042 Msa0712980:CDS 25.0%
!!! CTATTTTTTGAATCGTGAAT+CGG + chr5_1:4891305-4891324 Msa0712980:intron 25.0%
!! TTTTGTCAACTGTGTATATT+CGG - chr5_1:4891720-4891739 None:intergenic 25.0%
! ATACACAGTTGACAAAAAAA+TGG + chr5_1:4891723-4891742 Msa0712980:intron 25.0%
!!! AATGATTCTTTGGAATGAAT+TGG + chr5_1:4891767-4891786 Msa0712980:intron 25.0%
! TTGGAATTATCATTGTGAAA+CGG + chr5_1:4891786-4891805 Msa0712980:intron 25.0%
!! TCTCTAATGTGTATCTATTT+TGG - chr5_1:4891853-4891872 None:intergenic 25.0%
! ATTGATGCAAATATTATGTG+TGG + chr5_1:4891951-4891970 Msa0712980:intron 25.0%
!!! GTGAAAAATTCTCTTGTTTT+CGG + chr5_1:4892200-4892219 Msa0712980:CDS 25.0%
!! AAATGCTTGTATACTTTTAC+AGG - chr5_1:4892299-4892318 None:intergenic 25.0%
! AAAAATAGTGAATAGAGTGT+TGG - chr5_1:4892553-4892572 None:intergenic 25.0%
! AGATTAATCTTTCTAGGTTT+AGG - chr5_1:4892579-4892598 None:intergenic 25.0%
! TAAACCTAGAAAGATTAATC+TGG + chr5_1:4892578-4892597 Msa0712980:intron 25.0%
!! ACTTATTATCTTAAGGTGTT+TGG + chr5_1:4890855-4890874 Msa0712980:intron 25.0%
! TGTTTAGAAGATATGAAAGA+TGG + chr5_1:4891023-4891042 Msa0712980:CDS 25.0%
!!! CTATTTTTTGAATCGTGAAT+CGG + chr5_1:4891305-4891324 Msa0712980:intron 25.0%
!! TTTTGTCAACTGTGTATATT+CGG - chr5_1:4891720-4891739 None:intergenic 25.0%
! ATACACAGTTGACAAAAAAA+TGG + chr5_1:4891723-4891742 Msa0712980:intron 25.0%
!!! AATGATTCTTTGGAATGAAT+TGG + chr5_1:4891767-4891786 Msa0712980:intron 25.0%
! TTGGAATTATCATTGTGAAA+CGG + chr5_1:4891786-4891805 Msa0712980:intron 25.0%
!! TCTCTAATGTGTATCTATTT+TGG - chr5_1:4891853-4891872 None:intergenic 25.0%
! ATTGATGCAAATATTATGTG+TGG + chr5_1:4891951-4891970 Msa0712980:intron 25.0%
!!! GTGAAAAATTCTCTTGTTTT+CGG + chr5_1:4892200-4892219 Msa0712980:CDS 25.0%
!! AAATGCTTGTATACTTTTAC+AGG - chr5_1:4892299-4892318 None:intergenic 25.0%
! AAAAATAGTGAATAGAGTGT+TGG - chr5_1:4892553-4892572 None:intergenic 25.0%
! AGATTAATCTTTCTAGGTTT+AGG - chr5_1:4892579-4892598 None:intergenic 25.0%
! TAAACCTAGAAAGATTAATC+TGG + chr5_1:4892578-4892597 Msa0712980:intron 25.0%
! CTTACAACTGCAATGTTTTT+AGG + chr5_1:4890976-4890995 Msa0712980:intron 30.0%
!! TTATGGAGCATTTTATGGAA+TGG + chr5_1:4891063-4891082 Msa0712980:CDS 30.0%
!! TATGGAGCATTTTATGGAAT+GGG + chr5_1:4891064-4891083 Msa0712980:CDS 30.0%
AATGTTGGTATTACTCTTGT+TGG + chr5_1:4891175-4891194 Msa0712980:CDS 30.0%
! AAAAGAGGCATACCATTATA+AGG - chr5_1:4891241-4891260 None:intergenic 30.0%
!! TCTTTTTGTTGATTGTTACG+CGG + chr5_1:4891255-4891274 Msa0712980:intron 30.0%
CTCGTTACTACAAAATCAAT+AGG - chr5_1:4891491-4891510 None:intergenic 30.0%
TAGATAAGATGAAGGATAGT+CGG + chr5_1:4891513-4891532 Msa0712980:intron 30.0%
! TAGAGATTAATGAGTTGGAT+CGG + chr5_1:4891594-4891613 Msa0712980:intron 30.0%
AAAGAATCATTACGTAAACG+TGG - chr5_1:4891758-4891777 None:intergenic 30.0%
ACGTTTACGTAATGATTCTT+TGG + chr5_1:4891757-4891776 Msa0712980:intron 30.0%
TGGAATTATCATTGTGAAAC+GGG + chr5_1:4891787-4891806 Msa0712980:intron 30.0%
CAAAAGAGCTGGATTAAAAT+AGG - chr5_1:4892059-4892078 None:intergenic 30.0%
!!! CTATTTTAATCCAGCTCTTT+TGG + chr5_1:4892057-4892076 Msa0712980:intron 30.0%
CCAAAATAATACCTTTACGA+GGG - chr5_1:4892339-4892358 None:intergenic 30.0%
ACCAAAATAATACCTTTACG+AGG - chr5_1:4892340-4892359 None:intergenic 30.0%
ACAAGACAAATACTAGGTAA+TGG - chr5_1:4892388-4892407 None:intergenic 30.0%
!! GAATAGAGTGTTGGATAAAT+CGG - chr5_1:4892544-4892563 None:intergenic 30.0%
TATAAAGTTCCCATTGTGAT+AGG + chr5_1:4892604-4892623 Msa0712980:intron 30.0%
! CTTACAACTGCAATGTTTTT+AGG + chr5_1:4890976-4890995 Msa0712980:intron 30.0%
!! TTATGGAGCATTTTATGGAA+TGG + chr5_1:4891063-4891082 Msa0712980:CDS 30.0%
!! TATGGAGCATTTTATGGAAT+GGG + chr5_1:4891064-4891083 Msa0712980:CDS 30.0%
AATGTTGGTATTACTCTTGT+TGG + chr5_1:4891175-4891194 Msa0712980:CDS 30.0%
! AAAAGAGGCATACCATTATA+AGG - chr5_1:4891241-4891260 None:intergenic 30.0%
!! TCTTTTTGTTGATTGTTACG+CGG + chr5_1:4891255-4891274 Msa0712980:intron 30.0%
CTCGTTACTACAAAATCAAT+AGG - chr5_1:4891491-4891510 None:intergenic 30.0%
TAGATAAGATGAAGGATAGT+CGG + chr5_1:4891513-4891532 Msa0712980:intron 30.0%
! TAGAGATTAATGAGTTGGAT+CGG + chr5_1:4891594-4891613 Msa0712980:intron 30.0%
AAAGAATCATTACGTAAACG+TGG - chr5_1:4891758-4891777 None:intergenic 30.0%
ACGTTTACGTAATGATTCTT+TGG + chr5_1:4891757-4891776 Msa0712980:intron 30.0%
TGGAATTATCATTGTGAAAC+GGG + chr5_1:4891787-4891806 Msa0712980:intron 30.0%
CAAAAGAGCTGGATTAAAAT+AGG - chr5_1:4892059-4892078 None:intergenic 30.0%
!!! CTATTTTAATCCAGCTCTTT+TGG + chr5_1:4892057-4892076 Msa0712980:intron 30.0%
CCAAAATAATACCTTTACGA+GGG - chr5_1:4892339-4892358 None:intergenic 30.0%
ACCAAAATAATACCTTTACG+AGG - chr5_1:4892340-4892359 None:intergenic 30.0%
ACAAGACAAATACTAGGTAA+TGG - chr5_1:4892388-4892407 None:intergenic 30.0%
!! GAATAGAGTGTTGGATAAAT+CGG - chr5_1:4892544-4892563 None:intergenic 30.0%
TATAAAGTTCCCATTGTGAT+AGG + chr5_1:4892604-4892623 Msa0712980:intron 30.0%
GCGAAAACTGAAATTGAGTT+TGG - chr5_1:4890782-4890801 None:intergenic 35.0%
GGAATTGTGAAGACTTACTT+AGG - chr5_1:4890821-4890840 None:intergenic 35.0%
CCATAAAATGCTCCATAAGT+TGG - chr5_1:4891061-4891080 None:intergenic 35.0%
!! CCAACTTATGGAGCATTTTA+TGG + chr5_1:4891058-4891077 Msa0712980:CDS 35.0%
!! GCATTTTATGGAATGGGTTT+CGG + chr5_1:4891070-4891089 Msa0712980:CDS 35.0%
!!! GGTATTACTCTTGTTGGTTT+TGG + chr5_1:4891181-4891200 Msa0712980:CDS 35.0%
!!! ACTCTTGTTGGTTTTGGAAT+TGG + chr5_1:4891187-4891206 Msa0712980:CDS 35.0%
ATCTTTGCAGCTCCTTATAA+TGG + chr5_1:4891226-4891245 Msa0712980:CDS 35.0%
GCGTAACAATCAACAAAAAG+AGG - chr5_1:4891256-4891275 None:intergenic 35.0%
TATAAGAGAAACCCTGTAGA+TGG + chr5_1:4891444-4891463 Msa0712980:intron 35.0%
AACGAGAGTAGATAAGATGA+AGG + chr5_1:4891505-4891524 Msa0712980:intron 35.0%
! TAATGAGTTGGATCGGAATA+TGG + chr5_1:4891601-4891620 Msa0712980:intron 35.0%
AAATCCTTATCCCACTAAGT+GGG - chr5_1:4891671-4891690 None:intergenic 35.0%
AAAATCCTTATCCCACTAAG+TGG - chr5_1:4891672-4891691 None:intergenic 35.0%
! ACTTAGTGGGATAAGGATTT+TGG + chr5_1:4891671-4891690 Msa0712980:intron 35.0%
! TTCTCTTTGAAAGTCAGACA+CGG - chr5_1:4892176-4892195 None:intergenic 35.0%
!!! CCCTCGTAAAGGTATTATTT+TGG + chr5_1:4892336-4892355 Msa0712980:intron 35.0%
GCGAAAACTGAAATTGAGTT+TGG - chr5_1:4890782-4890801 None:intergenic 35.0%
GGAATTGTGAAGACTTACTT+AGG - chr5_1:4890821-4890840 None:intergenic 35.0%
CCATAAAATGCTCCATAAGT+TGG - chr5_1:4891061-4891080 None:intergenic 35.0%
!! CCAACTTATGGAGCATTTTA+TGG + chr5_1:4891058-4891077 Msa0712980:CDS 35.0%
!! GCATTTTATGGAATGGGTTT+CGG + chr5_1:4891070-4891089 Msa0712980:CDS 35.0%
!!! GGTATTACTCTTGTTGGTTT+TGG + chr5_1:4891181-4891200 Msa0712980:CDS 35.0%
!!! ACTCTTGTTGGTTTTGGAAT+TGG + chr5_1:4891187-4891206 Msa0712980:CDS 35.0%
ATCTTTGCAGCTCCTTATAA+TGG + chr5_1:4891226-4891245 Msa0712980:CDS 35.0%
GCGTAACAATCAACAAAAAG+AGG - chr5_1:4891256-4891275 None:intergenic 35.0%
TATAAGAGAAACCCTGTAGA+TGG + chr5_1:4891444-4891463 Msa0712980:intron 35.0%
AACGAGAGTAGATAAGATGA+AGG + chr5_1:4891505-4891524 Msa0712980:intron 35.0%
! TAATGAGTTGGATCGGAATA+TGG + chr5_1:4891601-4891620 Msa0712980:intron 35.0%
AAATCCTTATCCCACTAAGT+GGG - chr5_1:4891671-4891690 None:intergenic 35.0%
AAAATCCTTATCCCACTAAG+TGG - chr5_1:4891672-4891691 None:intergenic 35.0%
! ACTTAGTGGGATAAGGATTT+TGG + chr5_1:4891671-4891690 Msa0712980:intron 35.0%
! TTCTCTTTGAAAGTCAGACA+CGG - chr5_1:4892176-4892195 None:intergenic 35.0%
!!! CCCTCGTAAAGGTATTATTT+TGG + chr5_1:4892336-4892355 Msa0712980:intron 35.0%
GAGAGAGAAAGAGAAAGGAT+TGG - chr5_1:4890751-4890770 None:intergenic 40.0%
AAGCAGAGAGAGAAAGAGAA+AGG - chr5_1:4890756-4890775 None:intergenic 40.0%
AACCCTGTTCATCCAACTTA+TGG + chr5_1:4891046-4891065 Msa0712980:CDS 40.0%
! CTCCATAAGTTGGATGAACA+GGG - chr5_1:4891051-4891070 None:intergenic 40.0%
AGAAACCCTGTAGATGGTTT+GGG + chr5_1:4891450-4891469 Msa0712980:intron 40.0%
AAGGATAGTCGGTATACTAG+AGG + chr5_1:4891524-4891543 Msa0712980:intron 40.0%
AATCCTTATCCCACTAAGTG+GGG - chr5_1:4891670-4891689 None:intergenic 40.0%
! CTTTTTGTTGCCAAAAGAGC+TGG - chr5_1:4892070-4892089 None:intergenic 40.0%
TTGAAGTTAGCACGTTCTTG+TGG + chr5_1:4892097-4892116 Msa0712980:CDS 40.0%
TCTGACTTTCAAAGAGAAGC+TGG + chr5_1:4892178-4892197 Msa0712980:CDS 40.0%
AGCGCCAGATTAATCTTTCT+AGG - chr5_1:4892585-4892604 None:intergenic 40.0%
TTCCCATTGTGATAGGATCT+AGG + chr5_1:4892611-4892630 Msa0712980:intron 40.0%
TCCCATTGTGATAGGATCTA+GGG + chr5_1:4892612-4892631 Msa0712980:intron 40.0%
TCCCTAGATCCTATCACAAT+GGG - chr5_1:4892616-4892635 None:intergenic 40.0%
TTCCCTAGATCCTATCACAA+TGG - chr5_1:4892617-4892636 None:intergenic 40.0%
TTGTGATAGGATCTAGGGAA+TGG + chr5_1:4892617-4892636 Msa0712980:intron 40.0%
GAGAGAGAAAGAGAAAGGAT+TGG - chr5_1:4890751-4890770 None:intergenic 40.0%
AAGCAGAGAGAGAAAGAGAA+AGG - chr5_1:4890756-4890775 None:intergenic 40.0%
AACCCTGTTCATCCAACTTA+TGG + chr5_1:4891046-4891065 Msa0712980:CDS 40.0%
! CTCCATAAGTTGGATGAACA+GGG - chr5_1:4891051-4891070 None:intergenic 40.0%
AGAAACCCTGTAGATGGTTT+GGG + chr5_1:4891450-4891469 Msa0712980:intron 40.0%
AAGGATAGTCGGTATACTAG+AGG + chr5_1:4891524-4891543 Msa0712980:intron 40.0%
AATCCTTATCCCACTAAGTG+GGG - chr5_1:4891670-4891689 None:intergenic 40.0%
! CTTTTTGTTGCCAAAAGAGC+TGG - chr5_1:4892070-4892089 None:intergenic 40.0%
TTGAAGTTAGCACGTTCTTG+TGG + chr5_1:4892097-4892116 Msa0712980:CDS 40.0%
TCTGACTTTCAAAGAGAAGC+TGG + chr5_1:4892178-4892197 Msa0712980:CDS 40.0%
AGCGCCAGATTAATCTTTCT+AGG - chr5_1:4892585-4892604 None:intergenic 40.0%
TTCCCATTGTGATAGGATCT+AGG + chr5_1:4892611-4892630 Msa0712980:intron 40.0%
TCCCATTGTGATAGGATCTA+GGG + chr5_1:4892612-4892631 Msa0712980:intron 40.0%
TCCCTAGATCCTATCACAAT+GGG - chr5_1:4892616-4892635 None:intergenic 40.0%
TTCCCTAGATCCTATCACAA+TGG - chr5_1:4892617-4892636 None:intergenic 40.0%
TTGTGATAGGATCTAGGGAA+TGG + chr5_1:4892617-4892636 Msa0712980:intron 40.0%
! GCTCCATAAGTTGGATGAAC+AGG - chr5_1:4891052-4891071 None:intergenic 45.0%
ACAACTTCAGGACCAAATCC+AGG - chr5_1:4891121-4891140 None:intergenic 45.0%
! GGATTTGGTCCTGAAGTTGT+TGG + chr5_1:4891121-4891140 Msa0712980:CDS 45.0%
CCAACATAGCCAACAACTTC+AGG - chr5_1:4891133-4891152 None:intergenic 45.0%
! CCTGAAGTTGTTGGCTATGT+TGG + chr5_1:4891130-4891149 Msa0712980:CDS 45.0%
! TGTGGCGTTGGATTCAATGT+TGG + chr5_1:4891160-4891179 Msa0712980:CDS 45.0%
GCTGCAAAGATGACATTAGC+AGG - chr5_1:4891217-4891236 None:intergenic 45.0%
GAGAAACCCTGTAGATGGTT+TGG + chr5_1:4891449-4891468 Msa0712980:intron 45.0%
AGATGCCCAAACCATCTACA+GGG - chr5_1:4891458-4891477 None:intergenic 45.0%
AAGATGCCCAAACCATCTAC+AGG - chr5_1:4891459-4891478 None:intergenic 45.0%
CGTTCTTGTGGTCATCTTTC+TGG + chr5_1:4892109-4892128 Msa0712980:CDS 45.0%
TCTAATCCAAACATCCCCTG+AGG - chr5_1:4892143-4892162 None:intergenic 45.0%
! CTTTGAAAGTCAGACACGGA+AGG - chr5_1:4892172-4892191 None:intergenic 45.0%
CATGAAGAACAGCTTGCCTT+TGG + chr5_1:4892261-4892280 Msa0712980:CDS 45.0%
CAGGCAGAAGTAGTAACCAA+AGG - chr5_1:4892280-4892299 None:intergenic 45.0%
CTTTACGAGGGCTGAATAAC+TGG - chr5_1:4892327-4892346 None:intergenic 45.0%
CAGTTATTCAGCCCTCGTAA+AGG + chr5_1:4892325-4892344 Msa0712980:CDS 45.0%
GATAGGATCTAGGGAATGGT+TGG + chr5_1:4892621-4892640 Msa0712980:intron 45.0%
ACTTACTGTGGATCCATCGT+AGG + chr5_1:4892644-4892663 Msa0712980:CDS 45.0%
! GCTCCATAAGTTGGATGAAC+AGG - chr5_1:4891052-4891071 None:intergenic 45.0%
ACAACTTCAGGACCAAATCC+AGG - chr5_1:4891121-4891140 None:intergenic 45.0%
! GGATTTGGTCCTGAAGTTGT+TGG + chr5_1:4891121-4891140 Msa0712980:CDS 45.0%
CCAACATAGCCAACAACTTC+AGG - chr5_1:4891133-4891152 None:intergenic 45.0%
! CCTGAAGTTGTTGGCTATGT+TGG + chr5_1:4891130-4891149 Msa0712980:CDS 45.0%
! TGTGGCGTTGGATTCAATGT+TGG + chr5_1:4891160-4891179 Msa0712980:CDS 45.0%
GCTGCAAAGATGACATTAGC+AGG - chr5_1:4891217-4891236 None:intergenic 45.0%
GAGAAACCCTGTAGATGGTT+TGG + chr5_1:4891449-4891468 Msa0712980:intron 45.0%
AGATGCCCAAACCATCTACA+GGG - chr5_1:4891458-4891477 None:intergenic 45.0%
AAGATGCCCAAACCATCTAC+AGG - chr5_1:4891459-4891478 None:intergenic 45.0%
CGTTCTTGTGGTCATCTTTC+TGG + chr5_1:4892109-4892128 Msa0712980:CDS 45.0%
TCTAATCCAAACATCCCCTG+AGG - chr5_1:4892143-4892162 None:intergenic 45.0%
! CTTTGAAAGTCAGACACGGA+AGG - chr5_1:4892172-4892191 None:intergenic 45.0%
CATGAAGAACAGCTTGCCTT+TGG + chr5_1:4892261-4892280 Msa0712980:CDS 45.0%
CAGGCAGAAGTAGTAACCAA+AGG - chr5_1:4892280-4892299 None:intergenic 45.0%
CTTTACGAGGGCTGAATAAC+TGG - chr5_1:4892327-4892346 None:intergenic 45.0%
CAGTTATTCAGCCCTCGTAA+AGG + chr5_1:4892325-4892344 Msa0712980:CDS 45.0%
GATAGGATCTAGGGAATGGT+TGG + chr5_1:4892621-4892640 Msa0712980:intron 45.0%
ACTTACTGTGGATCCATCGT+AGG + chr5_1:4892644-4892663 Msa0712980:CDS 45.0%
! TATGGAATGGGTTTCGGCGT+TGG + chr5_1:4891076-4891095 Msa0712980:CDS 50.0%
! CGTTGGTTGTGGTGTTGGAT+GGG + chr5_1:4891093-4891112 Msa0712980:CDS 50.0%
! GTTGGTTGTGGTGTTGGATG+GGG + chr5_1:4891094-4891113 Msa0712980:CDS 50.0%
! GTTGTTGGCTATGTTGGAGC+TGG + chr5_1:4891136-4891155 Msa0712980:CDS 50.0%
AGTCGGTATACTAGAGGCAG+AGG + chr5_1:4891530-4891549 Msa0712980:intron 50.0%
ACTAAGTGGGGTCGACAACA+TGG - chr5_1:4891658-4891677 None:intergenic 50.0%
ATGTTGTCGACCCCACTTAG+TGG + chr5_1:4891657-4891676 Msa0712980:intron 50.0%
TGTTGTCGACCCCACTTAGT+GGG + chr5_1:4891658-4891677 Msa0712980:intron 50.0%
! TTTCTGGTCCACAAGCCTCA+GGG + chr5_1:4892125-4892144 Msa0712980:CDS 50.0%
GGGAATGGTTGGACTTACTG+TGG + chr5_1:4892632-4892651 Msa0712980:CDS 50.0%
AAGTTGCGGAATCAGCCTCT+AGG - chr5_1:4892678-4892697 None:intergenic 50.0%
! TATGGAATGGGTTTCGGCGT+TGG + chr5_1:4891076-4891095 Msa0712980:CDS 50.0%
! CGTTGGTTGTGGTGTTGGAT+GGG + chr5_1:4891093-4891112 Msa0712980:CDS 50.0%
! GTTGGTTGTGGTGTTGGATG+GGG + chr5_1:4891094-4891113 Msa0712980:CDS 50.0%
! GTTGTTGGCTATGTTGGAGC+TGG + chr5_1:4891136-4891155 Msa0712980:CDS 50.0%
AGTCGGTATACTAGAGGCAG+AGG + chr5_1:4891530-4891549 Msa0712980:intron 50.0%
ACTAAGTGGGGTCGACAACA+TGG - chr5_1:4891658-4891677 None:intergenic 50.0%
ATGTTGTCGACCCCACTTAG+TGG + chr5_1:4891657-4891676 Msa0712980:intron 50.0%
TGTTGTCGACCCCACTTAGT+GGG + chr5_1:4891658-4891677 Msa0712980:intron 50.0%
! TTTCTGGTCCACAAGCCTCA+GGG + chr5_1:4892125-4892144 Msa0712980:CDS 50.0%
GGGAATGGTTGGACTTACTG+TGG + chr5_1:4892632-4892651 Msa0712980:CDS 50.0%
AAGTTGCGGAATCAGCCTCT+AGG - chr5_1:4892678-4892697 None:intergenic 50.0%
!! ATGGGTTTCGGCGTTGGTTG+TGG + chr5_1:4891082-4891101 Msa0712980:CDS 55.0%
!! TTCGGCGTTGGTTGTGGTGT+TGG + chr5_1:4891088-4891107 Msa0712980:CDS 55.0%
!! GCGTTGGTTGTGGTGTTGGA+TGG + chr5_1:4891092-4891111 Msa0712980:CDS 55.0%
GTTGGATGGGGTCCTGGATT+TGG + chr5_1:4891106-4891125 Msa0712980:CDS 55.0%
GGCTATGTTGGAGCTGGTTG+TGG + chr5_1:4891142-4891161 Msa0712980:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5_1:4891664-4891683 Msa0712980:intron 55.0%
! CTTTCTGGTCCACAAGCCTC+AGG + chr5_1:4892124-4892143 Msa0712980:CDS 55.0%
TTCTGGTCCACAAGCCTCAG+GGG + chr5_1:4892126-4892145 Msa0712980:CDS 55.0%
CAAACATCCCCTGAGGCTTG+TGG - chr5_1:4892136-4892155 None:intergenic 55.0%
CACAAGCCTCAGGGGATGTT+TGG + chr5_1:4892134-4892153 Msa0712980:CDS 55.0%
CTAGGTAAGGCTGCCTACGA+TGG - chr5_1:4892660-4892679 None:intergenic 55.0%
TCGTAGGCAGCCTTACCTAG+AGG + chr5_1:4892660-4892679 Msa0712980:CDS 55.0%
GCGGAATCAGCCTCTAGGTA+AGG - chr5_1:4892673-4892692 None:intergenic 55.0%
!! ATGGGTTTCGGCGTTGGTTG+TGG + chr5_1:4891082-4891101 Msa0712980:CDS 55.0%
!! TTCGGCGTTGGTTGTGGTGT+TGG + chr5_1:4891088-4891107 Msa0712980:CDS 55.0%
!! GCGTTGGTTGTGGTGTTGGA+TGG + chr5_1:4891092-4891111 Msa0712980:CDS 55.0%
GTTGGATGGGGTCCTGGATT+TGG + chr5_1:4891106-4891125 Msa0712980:CDS 55.0%
GGCTATGTTGGAGCTGGTTG+TGG + chr5_1:4891142-4891161 Msa0712980:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5_1:4891664-4891683 Msa0712980:intron 55.0%
! CTTTCTGGTCCACAAGCCTC+AGG + chr5_1:4892124-4892143 Msa0712980:CDS 55.0%
TTCTGGTCCACAAGCCTCAG+GGG + chr5_1:4892126-4892145 Msa0712980:CDS 55.0%
CAAACATCCCCTGAGGCTTG+TGG - chr5_1:4892136-4892155 None:intergenic 55.0%
CACAAGCCTCAGGGGATGTT+TGG + chr5_1:4892134-4892153 Msa0712980:CDS 55.0%
CTAGGTAAGGCTGCCTACGA+TGG - chr5_1:4892660-4892679 None:intergenic 55.0%
TCGTAGGCAGCCTTACCTAG+AGG + chr5_1:4892660-4892679 Msa0712980:CDS 55.0%
GCGGAATCAGCCTCTAGGTA+AGG - chr5_1:4892673-4892692 None:intergenic 55.0%
! TGTGGTGTTGGATGGGGTCC+TGG + chr5_1:4891100-4891119 Msa0712980:CDS 60.0%
GTTGGAGCTGGTTGTGGCGT+TGG + chr5_1:4891148-4891167 Msa0712980:CDS 60.0%
! TGTGGTGTTGGATGGGGTCC+TGG + chr5_1:4891100-4891119 Msa0712980:CDS 60.0%
GTTGGAGCTGGTTGTGGCGT+TGG + chr5_1:4891148-4891167 Msa0712980:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4890721 4892699 4890721 ID=Msa0712980;Name=Msa0712980
chr5_1 mRNA 4890721 4892699 4890721 ID=Msa0712980-mRNA-1;Parent=Msa0712980;Name=Msa0712980-mRNA-1;_AED=0.29;_eAED=0.29;_QI=111|0.66|0.75|0.75|0.66|0.5|4|0|196
chr5_1 exon 4890721 4890822 4890721 ID=Msa0712980-mRNA-1:exon:2064;Parent=Msa0712980-mRNA-1
chr5_1 exon 4890998 4891247 4890998 ID=Msa0712980-mRNA-1:exon:2065;Parent=Msa0712980-mRNA-1
chr5_1 exon 4892071 4892346 4892071 ID=Msa0712980-mRNA-1:exon:2066;Parent=Msa0712980-mRNA-1
chr5_1 exon 4892626 4892699 4892626 ID=Msa0712980-mRNA-1:exon:2067;Parent=Msa0712980-mRNA-1
chr5_1 five_prime_UTR 4890721 4890822 4890721 ID=Msa0712980-mRNA-1:five_prime_utr;Parent=Msa0712980-mRNA-1
chr5_1 five_prime_UTR 4890998 4891006 4890998 ID=Msa0712980-mRNA-1:five_prime_utr;Parent=Msa0712980-mRNA-1
chr5_1 CDS 4891007 4891247 4891007 ID=Msa0712980-mRNA-1:cds;Parent=Msa0712980-mRNA-1
chr5_1 CDS 4892071 4892346 4892071 ID=Msa0712980-mRNA-1:cds;Parent=Msa0712980-mRNA-1
chr5_1 CDS 4892626 4892699 4892626 ID=Msa0712980-mRNA-1:cds;Parent=Msa0712980-mRNA-1
Gene Sequence

>Msa0712980

ATGATTATAAAAGGATTGTTTAGAAGATATGAAAGATGGAACCCTGTTCATCCAACTTATGGAGCATTTTATGGAATGGGTTTCGGCGTTGGTTGTGGTGTTGGATGGGGTCCTGGATTTGGTCCTGAAGTTGTTGGCTATGTTGGAGCTGGTTGTGGCGTTGGATTCAATGTTGGTATTACTCTTGTTGGTTTTGGAATTGGTCTTCCTGCTAATGTCATCTTTGCAGCTCCTTATAATGCTCTTTTGGCAACAAAAAGCTCTGCATTGAAGTTAGCACGTTCTTGTGGTCATCTTTCTGGTCCACAAGCCTCAGGGGATGTTTGGATTAGAAGTGTACCTTCCGTGTCTGACTTTCAAAGAGAAGCTGGTGAAAAATTCTCTTGTTTTCGGCAAAAGTATTTATCAATCAACGGAACTGATTTCTTTGACATGAAGAACAGCTTGCCTTTGGTTACTACTTCTGCCTGTAAAAGTATACAAGCATTTCATAGCCAGTTATTCAGCCCTCGTAAAGGATCTAGGGAATGGTTGGACTTACTGTGGATCCATCGTAGGCAGCCTTACCTAGAGGCTGATTCCGCAACTTGA

Protein sequence

>Msa0712980

MIIKGLFRRYERWNPVHPTYGAFYGMGFGVGCGVGWGPGFGPEVVGYVGAGCGVGFNVGITLVGFGIGLPANVIFAAPYNALLATKSSALKLARSCGHLSGPQASGDVWIRSVPSVSDFQREAGEKFSCFRQKYLSINGTDFFDMKNSLPLVTTSACKSIQAFHSQLFSPRKGSREWLDLLWIHRRQPYLEADSAT*