Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81436.t1 | XP_003617641.1 | 42.9 | 413 | 22 | 8 | 1 | 200 | 125 | 536 | 1.30E-56 | 229.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81436.t1 | Q8S9L5 | 46.5 | 187 | 64 | 6 | 29 | 181 | 226 | 410 | 4.8e-31 | 136.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81436.t1 | G7K8P7 | 42.9 | 413 | 22 | 8 | 1 | 200 | 125 | 536 | 9.5e-57 | 229.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049297 | MS.gene81436 | 0.800254 | 1.57E-48 | -1.69E-46 |
MS.gene049351 | MS.gene81436 | 0.854154 | 1.49E-61 | -1.69E-46 |
MS.gene049758 | MS.gene81436 | 0.832041 | 1.19E-55 | -1.69E-46 |
MS.gene049910 | MS.gene81436 | 0.827303 | 1.69E-54 | -1.69E-46 |
MS.gene049993 | MS.gene81436 | 0.811212 | 7.84E-51 | -1.69E-46 |
MS.gene050076 | MS.gene81436 | 0.803931 | 2.75E-49 | -1.69E-46 |
MS.gene050099 | MS.gene81436 | 0.823806 | 1.14E-53 | -1.69E-46 |
MS.gene050231 | MS.gene81436 | 0.816538 | 5.25E-52 | -1.69E-46 |
MS.gene050301 | MS.gene81436 | 0.893369 | 6.70E-75 | -1.69E-46 |
MS.gene050397 | MS.gene81436 | 0.851024 | 1.16E-60 | -1.69E-46 |
MS.gene050426 | MS.gene81436 | -0.807001 | 6.26E-50 | -1.69E-46 |
MS.gene050464 | MS.gene81436 | 0.834283 | 3.28E-56 | -1.69E-46 |
MS.gene050529 | MS.gene81436 | 0.831757 | 1.39E-55 | -1.69E-46 |
MS.gene050558 | MS.gene81436 | 0.83989 | 1.21E-57 | -1.69E-46 |
MS.gene050560 | MS.gene81436 | 0.814299 | 1.65E-51 | -1.69E-46 |
MS.gene050642 | MS.gene81436 | 0.815869 | 7.41E-52 | -1.69E-46 |
MS.gene050650 | MS.gene81436 | 0.840859 | 6.75E-58 | -1.69E-46 |
MS.gene050670 | MS.gene81436 | 0.869014 | 4.25E-66 | -1.69E-46 |
MS.gene050783 | MS.gene81436 | 0.80695 | 6.41E-50 | -1.69E-46 |
MS.gene050812 | MS.gene81436 | 0.826906 | 2.10E-54 | -1.69E-46 |
MS.gene05101 | MS.gene81436 | 0.851013 | 1.17E-60 | -1.69E-46 |
MS.gene05105 | MS.gene81436 | 0.81795 | 2.53E-52 | -1.69E-46 |
MS.gene051387 | MS.gene81436 | 0.848191 | 7.17E-60 | -1.69E-46 |
MS.gene051471 | MS.gene81436 | 0.815778 | 7.77E-52 | -1.69E-46 |
MS.gene051525 | MS.gene81436 | 0.880627 | 4.70E-70 | -1.69E-46 |
MS.gene051582 | MS.gene81436 | 0.870626 | 1.27E-66 | -1.69E-46 |
MS.gene051663 | MS.gene81436 | 0.825 | 5.95E-54 | -1.69E-46 |
MS.gene051860 | MS.gene81436 | 0.849622 | 2.87E-60 | -1.69E-46 |
MS.gene051983 | MS.gene81436 | 0.818392 | 2.01E-52 | -1.69E-46 |
MS.gene052011 | MS.gene81436 | -0.872532 | 2.96E-67 | -1.69E-46 |
MS.gene052077 | MS.gene81436 | 0.827193 | 1.79E-54 | -1.69E-46 |
MS.gene052078 | MS.gene81436 | 0.825149 | 5.49E-54 | -1.69E-46 |
MS.gene052188 | MS.gene81436 | 0.850689 | 1.44E-60 | -1.69E-46 |
MS.gene052207 | MS.gene81436 | 0.808851 | 2.53E-50 | -1.69E-46 |
MS.gene052253 | MS.gene81436 | 0.873485 | 1.42E-67 | -1.69E-46 |
MS.gene052310 | MS.gene81436 | 0.853182 | 2.83E-61 | -1.69E-46 |
MS.gene052322 | MS.gene81436 | 0.818546 | 1.85E-52 | -1.69E-46 |
MS.gene052326 | MS.gene81436 | 0.8206 | 6.29E-53 | -1.69E-46 |
MS.gene052340 | MS.gene81436 | 0.83449 | 2.91E-56 | -1.69E-46 |
MS.gene052421 | MS.gene81436 | 0.801108 | 1.05E-48 | -1.69E-46 |
MS.gene052481 | MS.gene81436 | 0.820978 | 5.15E-53 | -1.69E-46 |
MS.gene052485 | MS.gene81436 | 0.848706 | 5.17E-60 | -1.69E-46 |
MS.gene052982 | MS.gene81436 | 0.80325 | 3.81E-49 | -1.69E-46 |
MS.gene053209 | MS.gene81436 | 0.815669 | 8.21E-52 | -1.69E-46 |
MS.gene053557 | MS.gene81436 | 0.808272 | 3.36E-50 | -1.69E-46 |
MS.gene053836 | MS.gene81436 | 0.884049 | 2.67E-71 | -1.69E-46 |
MS.gene053907 | MS.gene81436 | 0.824028 | 1.01E-53 | -1.69E-46 |
MS.gene053928 | MS.gene81436 | 0.856318 | 3.49E-62 | -1.69E-46 |
MS.gene053971 | MS.gene81436 | 0.802124 | 6.51E-49 | -1.69E-46 |
MS.gene054010 | MS.gene81436 | 0.829519 | 4.92E-55 | -1.69E-46 |
MS.gene054011 | MS.gene81436 | 0.832781 | 7.77E-56 | -1.69E-46 |
MS.gene054012 | MS.gene81436 | 0.836011 | 1.20E-56 | -1.69E-46 |
MS.gene054013 | MS.gene81436 | 0.832641 | 8.42E-56 | -1.69E-46 |
MS.gene054123 | MS.gene81436 | 0.838437 | 2.88E-57 | -1.69E-46 |
MS.gene054183 | MS.gene81436 | 0.837756 | 4.31E-57 | -1.69E-46 |
MS.gene054349 | MS.gene81436 | 0.802531 | 5.37E-49 | -1.69E-46 |
MS.gene054473 | MS.gene81436 | 0.818675 | 1.73E-52 | -1.69E-46 |
MS.gene054556 | MS.gene81436 | 0.834062 | 3.72E-56 | -1.69E-46 |
MS.gene05455 | MS.gene81436 | 0.827058 | 1.93E-54 | -1.69E-46 |
MS.gene054719 | MS.gene81436 | 0.839892 | 1.21E-57 | -1.69E-46 |
MS.gene054920 | MS.gene81436 | 0.804399 | 2.20E-49 | -1.69E-46 |
MS.gene054930 | MS.gene81436 | 0.805619 | 1.22E-49 | -1.69E-46 |
MS.gene054942 | MS.gene81436 | 0.819772 | 9.74E-53 | -1.69E-46 |
MS.gene054983 | MS.gene81436 | 0.826096 | 3.27E-54 | -1.69E-46 |
MS.gene055116 | MS.gene81436 | 0.847238 | 1.31E-59 | -1.69E-46 |
MS.gene055277 | MS.gene81436 | 0.863361 | 2.63E-64 | -1.69E-46 |
MS.gene055369 | MS.gene81436 | 0.817514 | 3.17E-52 | -1.69E-46 |
MS.gene055390 | MS.gene81436 | 0.839465 | 1.56E-57 | -1.69E-46 |
MS.gene055412 | MS.gene81436 | 0.813442 | 2.55E-51 | -1.69E-46 |
MS.gene055422 | MS.gene81436 | 0.866576 | 2.58E-65 | -1.69E-46 |
MS.gene055428 | MS.gene81436 | 0.863063 | 3.25E-64 | -1.69E-46 |
MS.gene05553 | MS.gene81436 | 0.86827 | 7.40E-66 | -1.69E-46 |
MS.gene055564 | MS.gene81436 | 0.802082 | 6.64E-49 | -1.69E-46 |
MS.gene055604 | MS.gene81436 | 0.834368 | 3.12E-56 | -1.69E-46 |
MS.gene05594 | MS.gene81436 | 0.824432 | 8.10E-54 | -1.69E-46 |
MS.gene055971 | MS.gene81436 | 0.807771 | 4.30E-50 | -1.69E-46 |
MS.gene056191 | MS.gene81436 | 0.822506 | 2.28E-53 | -1.69E-46 |
MS.gene056407 | MS.gene81436 | 0.872081 | 4.18E-67 | -1.69E-46 |
MS.gene056410 | MS.gene81436 | 0.801772 | 7.69E-49 | -1.69E-46 |
MS.gene056451 | MS.gene81436 | 0.81069 | 1.02E-50 | -1.69E-46 |
MS.gene056612 | MS.gene81436 | 0.83535 | 1.77E-56 | -1.69E-46 |
MS.gene056659 | MS.gene81436 | 0.82367 | 1.22E-53 | -1.69E-46 |
MS.gene056723 | MS.gene81436 | 0.839846 | 1.24E-57 | -1.69E-46 |
MS.gene056796 | MS.gene81436 | 0.84707 | 1.46E-59 | -1.69E-46 |
MS.gene056899 | MS.gene81436 | -0.801438 | 9.01E-49 | -1.69E-46 |
MS.gene056902 | MS.gene81436 | 0.830409 | 2.99E-55 | -1.69E-46 |
MS.gene056979 | MS.gene81436 | 0.824483 | 7.88E-54 | -1.69E-46 |
MS.gene057011 | MS.gene81436 | 0.820645 | 6.15E-53 | -1.69E-46 |
MS.gene05702 | MS.gene81436 | 0.847396 | 1.19E-59 | -1.69E-46 |
MS.gene057121 | MS.gene81436 | 0.863176 | 3.00E-64 | -1.69E-46 |
MS.gene057146 | MS.gene81436 | 0.80668 | 7.31E-50 | -1.69E-46 |
MS.gene057245 | MS.gene81436 | 0.818533 | 1.87E-52 | -1.69E-46 |
MS.gene05733 | MS.gene81436 | 0.801701 | 7.95E-49 | -1.69E-46 |
MS.gene057396 | MS.gene81436 | 0.81121 | 7.85E-51 | -1.69E-46 |
MS.gene057439 | MS.gene81436 | 0.814892 | 1.22E-51 | -1.69E-46 |
MS.gene057450 | MS.gene81436 | 0.80177 | 7.70E-49 | -1.69E-46 |
MS.gene057469 | MS.gene81436 | 0.838183 | 3.35E-57 | -1.69E-46 |
MS.gene057476 | MS.gene81436 | 0.827804 | 1.28E-54 | -1.69E-46 |
MS.gene057749 | MS.gene81436 | 0.844436 | 7.57E-59 | -1.69E-46 |
MS.gene057823 | MS.gene81436 | 0.844463 | 7.45E-59 | -1.69E-46 |
MS.gene057825 | MS.gene81436 | 0.809036 | 2.31E-50 | -1.69E-46 |
MS.gene057888 | MS.gene81436 | 0.804099 | 2.54E-49 | -1.69E-46 |
MS.gene058002 | MS.gene81436 | 0.879054 | 1.70E-69 | -1.69E-46 |
MS.gene058007 | MS.gene81436 | 0.812265 | 4.62E-51 | -1.69E-46 |
MS.gene05811 | MS.gene81436 | 0.881609 | 2.08E-70 | -1.69E-46 |
MS.gene058142 | MS.gene81436 | 0.8661 | 3.65E-65 | -1.69E-46 |
MS.gene058233 | MS.gene81436 | 0.846486 | 2.11E-59 | -1.69E-46 |
MS.gene058276 | MS.gene81436 | 0.850639 | 1.49E-60 | -1.69E-46 |
MS.gene058293 | MS.gene81436 | 0.84589 | 3.06E-59 | -1.69E-46 |
MS.gene058365 | MS.gene81436 | 0.809529 | 1.81E-50 | -1.69E-46 |
MS.gene05842 | MS.gene81436 | 0.807925 | 3.98E-50 | -1.69E-46 |
MS.gene058444 | MS.gene81436 | 0.808791 | 2.60E-50 | -1.69E-46 |
MS.gene058660 | MS.gene81436 | 0.866232 | 3.32E-65 | -1.69E-46 |
MS.gene058700 | MS.gene81436 | 0.843539 | 1.32E-58 | -1.69E-46 |
MS.gene058710 | MS.gene81436 | 0.812725 | 3.67E-51 | -1.69E-46 |
MS.gene058739 | MS.gene81436 | 0.8051 | 1.57E-49 | -1.69E-46 |
MS.gene05886 | MS.gene81436 | 0.866465 | 2.80E-65 | -1.69E-46 |
MS.gene058993 | MS.gene81436 | 0.800634 | 1.31E-48 | -1.69E-46 |
MS.gene05907 | MS.gene81436 | 0.908707 | 1.27E-81 | -1.69E-46 |
MS.gene059141 | MS.gene81436 | 0.835454 | 1.66E-56 | -1.69E-46 |
MS.gene059420 | MS.gene81436 | 0.860446 | 2.05E-63 | -1.69E-46 |
MS.gene059462 | MS.gene81436 | 0.813585 | 2.38E-51 | -1.69E-46 |
MS.gene059518 | MS.gene81436 | 0.848336 | 6.54E-60 | -1.69E-46 |
MS.gene059597 | MS.gene81436 | 0.846228 | 2.48E-59 | -1.69E-46 |
MS.gene05959 | MS.gene81436 | 0.816174 | 6.33E-52 | -1.69E-46 |
MS.gene059676 | MS.gene81436 | 0.869059 | 4.11E-66 | -1.69E-46 |
MS.gene059688 | MS.gene81436 | 0.855247 | 7.17E-62 | -1.69E-46 |
MS.gene059692 | MS.gene81436 | 0.859375 | 4.32E-63 | -1.69E-46 |
MS.gene059695 | MS.gene81436 | 0.864522 | 1.14E-64 | -1.69E-46 |
MS.gene05984 | MS.gene81436 | 0.871494 | 6.55E-67 | -1.69E-46 |
MS.gene059894 | MS.gene81436 | 0.839329 | 1.69E-57 | -1.69E-46 |
MS.gene06037 | MS.gene81436 | 0.811345 | 7.34E-51 | -1.69E-46 |
MS.gene060403 | MS.gene81436 | 0.823513 | 1.33E-53 | -1.69E-46 |
MS.gene060407 | MS.gene81436 | 0.838371 | 2.99E-57 | -1.69E-46 |
MS.gene06090 | MS.gene81436 | 0.847232 | 1.32E-59 | -1.69E-46 |
MS.gene060986 | MS.gene81436 | 0.803421 | 3.51E-49 | -1.69E-46 |
MS.gene061049 | MS.gene81436 | 0.858028 | 1.09E-62 | -1.69E-46 |
MS.gene061154 | MS.gene81436 | 0.832123 | 1.13E-55 | -1.69E-46 |
MS.gene061159 | MS.gene81436 | 0.820553 | 6.46E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 35 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTTCCTTGATTCTATAAT+TGG | 0.141614 | 5.3:+75968913 | MS.gene81436:CDS |
TTTCCTGCTTGCCATGTTTC+AGG | 0.195437 | 5.3:-75968975 | None:intergenic |
TAGCTGTTTGCTCTATCTCT+TGG | 0.323366 | 5.3:-75969487 | None:intergenic |
CTTGATTCTATAATTGGAAT+TGG | 0.335719 | 5.3:+75968919 | MS.gene81436:CDS |
AGTATTCTTGTTGGTTATGT+GGG | 0.365092 | 5.3:+75967337 | MS.gene81436:CDS |
TGGCAGTTGGTGACATATAT+AGG | 0.388142 | 5.3:+75970125 | MS.gene81436:CDS |
CAGCAGAGATTTACCAGAGC+TGG | 0.405981 | 5.3:+75969286 | MS.gene81436:CDS |
TAACCAACAAGAATACTTTC+CGG | 0.419451 | 5.3:-75967331 | None:intergenic |
AAGTATTCTTGTTGGTTATG+TGG | 0.444352 | 5.3:+75967336 | MS.gene81436:CDS |
GGTCCGGAAAGTATTCTTGT+TGG | 0.453758 | 5.3:+75967328 | MS.gene81436:CDS |
CGAGGAACGTGTAAAGGAAC+AGG | 0.479197 | 5.3:+75970472 | MS.gene81436:CDS |
ATACGACGAGGAACGTGTAA+AGG | 0.502907 | 5.3:+75970466 | MS.gene81436:CDS |
TGTTTACTTCAACAGGTACC+TGG | 0.509965 | 5.3:+75967287 | MS.gene81436:intron |
TTTCCTGAAACATGGCAAGC+AGG | 0.517167 | 5.3:+75968972 | MS.gene81436:CDS |
ATTCCTTCTGCTGAAAGTAA+AGG | 0.519175 | 5.3:+75968741 | MS.gene81436:CDS |
CTACCTTTACTTTCAGCAGA+AGG | 0.525053 | 5.3:-75968744 | None:intergenic |
TCTATAATTGGAATTGGTCG+AGG | 0.525412 | 5.3:+75968925 | MS.gene81436:CDS |
CAATTCCAATTATAGAATCA+AGG | 0.531449 | 5.3:-75968918 | None:intergenic |
GATATTTGATTCTTGATCAA+CGG | 0.532623 | 5.3:-75968712 | None:intergenic |
TATATATGTCACCAACTGCC+AGG | 0.537928 | 5.3:-75970123 | None:intergenic |
GCAATAGAATCATCCAGCTC+TGG | 0.538008 | 5.3:-75969299 | None:intergenic |
CAGGTACCTGGATTTCGTCC+TGG | 0.538561 | 5.3:+75967299 | MS.gene81436:intron |
GCATGTGGAGGTACCATCAC+TGG | 0.547973 | 5.3:+75966902 | MS.gene81436:CDS |
ATCAAACAGAACCTGGCAGT+TGG | 0.559239 | 5.3:+75970112 | MS.gene81436:CDS |
AAATTTGATCAAACAGAACC+TGG | 0.587535 | 5.3:+75970105 | MS.gene81436:CDS |
GTATTCTTGTTGGTTATGTG+GGG | 0.588330 | 5.3:+75967338 | MS.gene81436:CDS |
AAGAGATAGAGCAAACAGCT+AGG | 0.593034 | 5.3:+75969489 | MS.gene81436:CDS |
ATTATAGAATCAAGGAAACC+TGG | 0.599565 | 5.3:-75968910 | None:intergenic |
CAGTCCTCGCATACCAGTGA+TGG | 0.604531 | 5.3:-75966915 | None:intergenic |
GATGGTGAAATATTAGTACC+AGG | 0.615164 | 5.3:+75968892 | MS.gene81436:CDS |
CCTGCAGGTTAGATTGCATG+TGG | 0.627284 | 5.3:+75966887 | None:intergenic |
TGGCAAGCAGGAAAATCTCA+AGG | 0.629089 | 5.3:+75968984 | MS.gene81436:CDS |
GCAGGTTAGATTGCATGTGG+AGG | 0.673127 | 5.3:+75966890 | None:intergenic |
GGTACCATCACTGGTATGCG+AGG | 0.674391 | 5.3:+75966911 | MS.gene81436:CDS |
GTCAAAACAAGAATACGACG+AGG | 0.783491 | 5.3:+75970454 | MS.gene81436:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTATTTGTTCTTATT+TGG | + | chr5.3:75969969-75969988 | MS.gene81436:intron | 10.0% |
!! | AAAATACATATAAAAGGAAA+TGG | - | chr5.3:75968606-75968625 | None:intergenic | 15.0% |
!! | AGTCTATTTAGTAAATTATT+TGG | + | chr5.3:75970338-75970357 | MS.gene81436:intron | 15.0% |
!! | ATTAAGAAACCAATTAAAAA+TGG | - | chr5.3:75968438-75968457 | None:intergenic | 15.0% |
!!! | TTTTCTTTTCCATTTTTAAT+TGG | + | chr5.3:75968426-75968445 | MS.gene81436:intron | 15.0% |
!!! | TTTTTTTTTCTTTCTTTTTC+TGG | + | chr5.3:75969703-75969722 | MS.gene81436:intron | 15.0% |
!! | AAAGTTATTACTGAAAAATG+TGG | + | chr5.3:75967821-75967840 | MS.gene81436:intron | 20.0% |
!! | ATACTCATAAAATAGAGAAA+AGG | + | chr5.3:75968084-75968103 | MS.gene81436:intron | 20.0% |
!! | ATGATTTCTGATATCTAAAT+TGG | + | chr5.3:75967099-75967118 | MS.gene81436:intron | 20.0% |
!! | TAAAACATATGAGAGAAATA+TGG | - | chr5.3:75968542-75968561 | None:intergenic | 20.0% |
!! | TAGTAAACTTGTATATGATA+TGG | - | chr5.3:75967203-75967222 | None:intergenic | 20.0% |
!!! | ACATTTTTCAGTAATAACTT+TGG | - | chr5.3:75967822-75967841 | None:intergenic | 20.0% |
!!! | AGCATAATAGTTTTTTCTTT+TGG | + | chr5.3:75969083-75969102 | MS.gene81436:intron | 20.0% |
!!! | AGTTACTAAATTTTCTGATA+TGG | + | chr5.3:75967945-75967964 | MS.gene81436:intron | 20.0% |
!!! | ATCAGAAATCATTTAATTTC+TGG | - | chr5.3:75968230-75968249 | None:intergenic | 20.0% |
!!! | CAATTTTGTTTTATAGTTAC+TGG | + | chr5.3:75967894-75967913 | MS.gene81436:intron | 20.0% |
!!! | TTTTCTGAATGAATTTTGTT+TGG | - | chr5.3:75967045-75967064 | None:intergenic | 20.0% |
!!! | TTTTTTTCCTTTAAGATGTT+GGG | - | chr5.3:75969925-75969944 | None:intergenic | 20.0% |
!!! | TTTTTTTTCCTTTAAGATGT+TGG | - | chr5.3:75969926-75969945 | None:intergenic | 20.0% |
! | AAAACTATTATGCTGTATGT+TGG | - | chr5.3:75969077-75969096 | None:intergenic | 25.0% |
! | AAACTTGTATATGATATGGT+AGG | - | chr5.3:75967199-75967218 | None:intergenic | 25.0% |
! | AACTTGTATATGATATGGTA+GGG | - | chr5.3:75967198-75967217 | None:intergenic | 25.0% |
! | AGCATAAATCAATAATACCT+TGG | - | chr5.3:75966975-75966994 | None:intergenic | 25.0% |
! | ATAGATTCTGAACAATTGTT+TGG | - | chr5.3:75968519-75968538 | None:intergenic | 25.0% |
! | ATTTCTGATATCTAAATTGG+AGG | + | chr5.3:75967102-75967121 | MS.gene81436:intron | 25.0% |
! | CAATTCCAATTATAGAATCA+AGG | - | chr5.3:75968921-75968940 | None:intergenic | 25.0% |
! | CATCTGAAAAAGAATTTAGA+AGG | + | chr5.3:75968311-75968330 | MS.gene81436:CDS | 25.0% |
! | CTAAGTAACATTACATCATT+AGG | + | chr5.3:75969550-75969569 | MS.gene81436:intron | 25.0% |
! | CTTGATTCTATAATTGGAAT+TGG | + | chr5.3:75968919-75968938 | MS.gene81436:CDS | 25.0% |
! | GATATTTGATTCTTGATCAA+CGG | - | chr5.3:75968715-75968734 | None:intergenic | 25.0% |
! | GTAAATATGATGAATATGAC+TGG | - | chr5.3:75967584-75967603 | None:intergenic | 25.0% |
! | TCACATACATGTATAGTTTA+TGG | + | chr5.3:75969127-75969146 | MS.gene81436:intron | 25.0% |
! | TCTATACAAATAGTTAACTC+AGG | + | chr5.3:75970190-75970209 | MS.gene81436:intron | 25.0% |
! | TTAACAATGTTTACTTCAAC+AGG | + | chr5.3:75967280-75967299 | MS.gene81436:intron | 25.0% |
! | TTGTATACAGACTCAAAAAA+AGG | - | chr5.3:75968056-75968075 | None:intergenic | 25.0% |
!! | TACTAAATTTTCTGATATGG+AGG | + | chr5.3:75967948-75967967 | MS.gene81436:intron | 25.0% |
!! | TACTGAAAAATGTGGATTAT+TGG | + | chr5.3:75967829-75967848 | MS.gene81436:intron | 25.0% |
!! | TATACACTCATATCATCTTT+TGG | - | chr5.3:75970244-75970263 | None:intergenic | 25.0% |
!! | TTTGTGATAGCAAGTTATTT+TGG | + | chr5.3:75968798-75968817 | MS.gene81436:intron | 25.0% |
!!! | ATATGTTTTATTTAGTCGCA+GGG | + | chr5.3:75968552-75968571 | MS.gene81436:intron | 25.0% |
!!! | TTAGCTTTTTAGACAATGTT+GGG | + | chr5.3:75967490-75967509 | MS.gene81436:intron | 25.0% |
!!! | TTGTGATAGCAAGTTATTTT+GGG | + | chr5.3:75968799-75968818 | MS.gene81436:intron | 25.0% |
!!! | TTGTGCGTATTTAATTTTAC+AGG | + | chr5.3:75968653-75968672 | MS.gene81436:intron | 25.0% |
!!! | TTGTTTTATAGTTACTGGAA+GGG | + | chr5.3:75967899-75967918 | MS.gene81436:intron | 25.0% |
!!! | TTTGTTTTATAGTTACTGGA+AGG | + | chr5.3:75967898-75967917 | MS.gene81436:intron | 25.0% |
AAATTTGATCAAACAGAACC+TGG | + | chr5.3:75970105-75970124 | MS.gene81436:CDS | 30.0% | |
AACATCATACTATGTTATGC+AGG | + | chr5.3:75968850-75968869 | MS.gene81436:intron | 30.0% | |
AAGATATCCGAGAGAATAAT+AGG | - | chr5.3:75967977-75967996 | None:intergenic | 30.0% | |
AATAACTTTGGACAAACGAT+TGG | - | chr5.3:75967810-75967829 | None:intergenic | 30.0% | |
ATACATGTATGTGAACAAGT+TGG | - | chr5.3:75969121-75969140 | None:intergenic | 30.0% | |
ATGCTCAAGATATTCATTCA+CGG | - | chr5.3:75970066-75970085 | None:intergenic | 30.0% | |
ATTATAGAATCAAGGAAACC+TGG | - | chr5.3:75968913-75968932 | None:intergenic | 30.0% | |
ATTATTCTCTCGGATATCTT+AGG | + | chr5.3:75967977-75967996 | MS.gene81436:intron | 30.0% | |
CATATCGAAAAAATGTTGTG+AGG | - | chr5.3:75969624-75969643 | None:intergenic | 30.0% | |
CGTACTATAAAGATGTTTGT+TGG | + | chr5.3:75967617-75967636 | MS.gene81436:intron | 30.0% | |
CTTAGGTAATCAATACGTTA+CGG | + | chr5.3:75967994-75968013 | MS.gene81436:intron | 30.0% | |
CTTTATCCAATCAGAAAACT+TGG | + | chr5.3:75969896-75969915 | MS.gene81436:intron | 30.0% | |
GAATATCTTGAGCATTCATA+AGG | + | chr5.3:75970071-75970090 | MS.gene81436:intron | 30.0% | |
GGTTTCCTTGATTCTATAAT+TGG | + | chr5.3:75968913-75968932 | MS.gene81436:CDS | 30.0% | |
TAACCAACAAGAATACTTTC+CGG | - | chr5.3:75967334-75967353 | None:intergenic | 30.0% | |
TATACAGACTCAAAAAAAGG+AGG | - | chr5.3:75968053-75968072 | None:intergenic | 30.0% | |
TCAATACCTGCATTTCTAAT+AGG | - | chr5.3:75969860-75969879 | None:intergenic | 30.0% | |
TGATGCATACAAATACTTGA+AGG | + | chr5.3:75968249-75968268 | MS.gene81436:intron | 30.0% | |
TGATTGTGAGTAAAATTCTC+CGG | + | chr5.3:75969425-75969444 | MS.gene81436:intron | 30.0% | |
TGTCCATGATAGTAAAATTG+TGG | + | chr5.3:75967693-75967712 | MS.gene81436:intron | 30.0% | |
! | AAGTATTCTTGTTGGTTATG+TGG | + | chr5.3:75967336-75967355 | MS.gene81436:CDS | 30.0% |
! | AGTATTCTTGTTGGTTATGT+GGG | + | chr5.3:75967337-75967356 | MS.gene81436:CDS | 30.0% |
! | CAGCATGTTTTCTTAAAAGA+GGG | - | chr5.3:75967231-75967250 | None:intergenic | 30.0% |
! | TCATATCATCTTTTGGCAAT+GGG | - | chr5.3:75970237-75970256 | None:intergenic | 30.0% |
! | TCTCCACAATTTTACTATCA+TGG | - | chr5.3:75967699-75967718 | None:intergenic | 30.0% |
!! | AGGATTCAATTTTGATACAG+AGG | + | chr5.3:75968870-75968889 | MS.gene81436:intron | 30.0% |
!! | GCGTATTTAATTTTACAGGT+CGG | + | chr5.3:75968657-75968676 | MS.gene81436:intron | 30.0% |
!! | TGTGATAGCAAGTTATTTTG+GGG | + | chr5.3:75968800-75968819 | MS.gene81436:intron | 30.0% |
!! | TTCAATTTTGATACAGAGGA+TGG | + | chr5.3:75968874-75968893 | MS.gene81436:CDS | 30.0% |
!!! | CATATGTTTTATTTAGTCGC+AGG | + | chr5.3:75968551-75968570 | MS.gene81436:intron | 30.0% |
!!! | GTTAGCTTTTTAGACAATGT+TGG | + | chr5.3:75967489-75967508 | MS.gene81436:intron | 30.0% |
ACATCCAGGATAAGTTTATC+AGG | - | chr5.3:75969324-75969343 | None:intergenic | 35.0% | |
ACTATGACAATTGCACTTGA+GGG | - | chr5.3:75969374-75969393 | None:intergenic | 35.0% | |
AGATATTCATTCACGGACTT+TGG | - | chr5.3:75970059-75970078 | None:intergenic | 35.0% | |
ATATAGGCGTGAAAATATGC+AGG | + | chr5.3:75970141-75970160 | MS.gene81436:intron | 35.0% | |
ATTCCTTCTGCTGAAAGTAA+AGG | + | chr5.3:75968741-75968760 | MS.gene81436:CDS | 35.0% | |
ATTGCCTGATAAACTTATCC+TGG | + | chr5.3:75969317-75969336 | MS.gene81436:intron | 35.0% | |
CATACACAAACACAGATCAA+AGG | - | chr5.3:75969181-75969200 | None:intergenic | 35.0% | |
CATGTTTCAGGAAAAACAAG+GGG | - | chr5.3:75968966-75968985 | None:intergenic | 35.0% | |
CCATGTTTCAGGAAAAACAA+GGG | - | chr5.3:75968967-75968986 | None:intergenic | 35.0% | |
CGAACTTTGTAAACTCAACT+AGG | - | chr5.3:75966952-75966971 | None:intergenic | 35.0% | |
CTAACAATAAGTCTTTGACC+TGG | - | chr5.3:75969460-75969479 | None:intergenic | 35.0% | |
CTCAATCAGATTAAACTGAG+TGG | - | chr5.3:75970271-75970290 | None:intergenic | 35.0% | |
GAAACACATCATTATGCACA+AGG | - | chr5.3:75969660-75969679 | None:intergenic | 35.0% | |
GAAGCTAGAGAACAACATAT+AGG | - | chr5.3:75970384-75970403 | None:intergenic | 35.0% | |
GAGGATACCTATTATTCTCT+CGG | + | chr5.3:75967967-75967986 | MS.gene81436:intron | 35.0% | |
GATGGTGAAATATTAGTACC+AGG | + | chr5.3:75968892-75968911 | MS.gene81436:CDS | 35.0% | |
GCTTCTCTTTCATTTCTAAC+AGG | + | chr5.3:75969241-75969260 | MS.gene81436:intron | 35.0% | |
GGGAGTAAAAATGTTCACAA+AGG | + | chr5.3:75967358-75967377 | MS.gene81436:intron | 35.0% | |
TAACAAGTCCTCATGTCAAA+AGG | - | chr5.3:75967740-75967759 | None:intergenic | 35.0% | |
TACTATGACAATTGCACTTG+AGG | - | chr5.3:75969375-75969394 | None:intergenic | 35.0% | |
TATCATGGACATCGATAATG+TGG | - | chr5.3:75967684-75967703 | None:intergenic | 35.0% | |
TCTACCTTGTTCATCAAACA+AGG | - | chr5.3:75969820-75969839 | None:intergenic | 35.0% | |
TCTATAATTGGAATTGGTCG+AGG | + | chr5.3:75968925-75968944 | MS.gene81436:CDS | 35.0% | |
TCTCTTCCATGCAAAATTTG+AGG | + | chr5.3:75967142-75967161 | MS.gene81436:intron | 35.0% | |
TGCTTCCGTTAAAGTTCAAT+GGG | - | chr5.3:75969212-75969231 | None:intergenic | 35.0% | |
TTGACGTTTGAATTCAGCAA+TGG | - | chr5.3:75970439-75970458 | None:intergenic | 35.0% | |
TTGCTTCCGTTAAAGTTCAA+TGG | - | chr5.3:75969213-75969232 | None:intergenic | 35.0% | |
TTGGATTCCCAACATCTTAA+AGG | + | chr5.3:75969915-75969934 | MS.gene81436:intron | 35.0% | |
TTGTGAGGTACATTCTAATC+TGG | - | chr5.3:75969609-75969628 | None:intergenic | 35.0% | |
! | ATGAAATGCCTTTTGACATG+AGG | + | chr5.3:75967729-75967748 | MS.gene81436:intron | 35.0% |
! | CAATCCTTGTTTGATGAACA+AGG | + | chr5.3:75969813-75969832 | MS.gene81436:intron | 35.0% |
! | CAGTAACCTCAAATTTTGCA+TGG | - | chr5.3:75967151-75967170 | None:intergenic | 35.0% |
! | CTCATATCATCTTTTGGCAA+TGG | - | chr5.3:75970238-75970257 | None:intergenic | 35.0% |
! | GCAGCATGTTTTCTTAAAAG+AGG | - | chr5.3:75967232-75967251 | None:intergenic | 35.0% |
! | GTATTCTTGTTGGTTATGTG+GGG | + | chr5.3:75967338-75967357 | MS.gene81436:CDS | 35.0% |
!! | ATGCAGGTATTGATTCAAGT+AGG | + | chr5.3:75969867-75969886 | MS.gene81436:intron | 35.0% |
!! | CTCGCTTATTTTCACTTTTC+AGG | + | chr5.3:75968181-75968200 | MS.gene81436:intron | 35.0% |
AAAACTAACTGAAGAGCAGC+TGG | + | chr5.3:75970019-75970038 | MS.gene81436:intron | 40.0% | |
AACAGCGGTATGTTGTAATC+TGG | + | chr5.3:75967427-75967446 | MS.gene81436:intron | 40.0% | |
AACATCCAAGAAAGAACGCA+AGG | - | chr5.3:75967472-75967491 | None:intergenic | 40.0% | |
AAGAGATAGAGCAAACAGCT+AGG | + | chr5.3:75969489-75969508 | MS.gene81436:CDS | 40.0% | |
ACAAGTGTCAGTTAGTTGAC+TGG | - | chr5.3:75968407-75968426 | None:intergenic | 40.0% | |
ACGAGCCCATTGAACTTTAA+CGG | + | chr5.3:75969204-75969223 | MS.gene81436:intron | 40.0% | |
ACGATCGAGCTCAATATTTG+AGG | + | chr5.3:75967383-75967402 | MS.gene81436:intron | 40.0% | |
ACGCAAGGACATCAAAAATG+AGG | - | chr5.3:75967457-75967476 | None:intergenic | 40.0% | |
ATCCAGCCTATTAGAAATGC+AGG | + | chr5.3:75969851-75969870 | MS.gene81436:intron | 40.0% | |
ATCGAGCTCAATATTTGAGG+AGG | + | chr5.3:75967386-75967405 | MS.gene81436:intron | 40.0% | |
ATCTGCAGTGTAGAAGTCAT+CGG | - | chr5.3:75968142-75968161 | None:intergenic | 40.0% | |
CATGAGTGATTCCTTGATCA+TGG | + | chr5.3:75967540-75967559 | MS.gene81436:intron | 40.0% | |
CATGATCAAGGAATCACTCA+TGG | - | chr5.3:75967542-75967561 | None:intergenic | 40.0% | |
CTACCTTTACTTTCAGCAGA+AGG | - | chr5.3:75968747-75968766 | None:intergenic | 40.0% | |
CTACTGAAGACATCATCAAG+AGG | + | chr5.3:75970404-75970423 | MS.gene81436:intron | 40.0% | |
CTGAAAGTTGTTACTGACAG+AGG | + | chr5.3:75968354-75968373 | MS.gene81436:intron | 40.0% | |
CTGTTTACTAGCCATGATCA+AGG | - | chr5.3:75967554-75967573 | None:intergenic | 40.0% | |
CTTCTGCTGAAAGTAAAGGT+AGG | + | chr5.3:75968745-75968764 | MS.gene81436:intron | 40.0% | |
GAACAAGGTAGACAGCTATA+TGG | + | chr5.3:75969828-75969847 | MS.gene81436:intron | 40.0% | |
GAGGTACATTCTAATCTGGA+AGG | - | chr5.3:75969605-75969624 | None:intergenic | 40.0% | |
GCCATGTTTCAGGAAAAACA+AGG | - | chr5.3:75968968-75968987 | None:intergenic | 40.0% | |
GTCAAAACAAGAATACGACG+AGG | + | chr5.3:75970454-75970473 | MS.gene81436:intron | 40.0% | |
TACCTGCATTTCTAATAGGC+TGG | - | chr5.3:75969856-75969875 | None:intergenic | 40.0% | |
TAGCTGTTTGCTCTATCTCT+TGG | - | chr5.3:75969490-75969509 | None:intergenic | 40.0% | |
TAGGTGATGTGCTTGCAAAA+TGG | + | chr5.3:75968764-75968783 | MS.gene81436:intron | 40.0% | |
TATATATGTCACCAACTGCC+AGG | - | chr5.3:75970126-75970145 | None:intergenic | 40.0% | |
TGAGTTTACAAAGTTCGCCA+AGG | + | chr5.3:75966955-75966974 | MS.gene81436:intron | 40.0% | |
TGGACATCGATAATGTGGAA+TGG | - | chr5.3:75967679-75967698 | None:intergenic | 40.0% | |
TGGATTTCGTCCTGGAAAAA+AGG | + | chr5.3:75967307-75967326 | MS.gene81436:CDS | 40.0% | |
TGTTTACTTCAACAGGTACC+TGG | + | chr5.3:75967287-75967306 | MS.gene81436:intron | 40.0% | |
TTGTGTTAGTGCAATGTGCA+TGG | - | chr5.3:75967644-75967663 | None:intergenic | 40.0% | |
TTTGACCTGGAAATTCATGC+CGG | - | chr5.3:75969447-75969466 | None:intergenic | 40.0% | |
! | GGGAATCCAAGTTTTCTGAT+TGG | - | chr5.3:75969905-75969924 | None:intergenic | 40.0% |
!! | CTCTTGATGATGTCTTCAGT+AGG | - | chr5.3:75970406-75970425 | None:intergenic | 40.0% |
!! | TGGCAGTTGGTGACATATAT+AGG | + | chr5.3:75970125-75970144 | MS.gene81436:CDS | 40.0% |
!!! | CCCTTGTTTTTCCTGAAACA+TGG | + | chr5.3:75968964-75968983 | MS.gene81436:CDS | 40.0% |
!!! | TTTTTTCCAGGACGAAATCC+AGG | - | chr5.3:75967308-75967327 | None:intergenic | 40.0% |
AAAAGTCACCTGTTGCACTG+TGG | - | chr5.3:75969348-75969367 | None:intergenic | 45.0% | |
ACTTTCACACGCTGTAACAG+CGG | + | chr5.3:75967412-75967431 | MS.gene81436:intron | 45.0% | |
ATACGACGAGGAACGTGTAA+AGG | + | chr5.3:75970466-75970485 | MS.gene81436:CDS | 45.0% | |
ATCAAACAGAACCTGGCAGT+TGG | + | chr5.3:75970112-75970131 | MS.gene81436:CDS | 45.0% | |
ATTCTCCGGCATGAATTTCC+AGG | + | chr5.3:75969439-75969458 | MS.gene81436:intron | 45.0% | |
CGTTATAAAACGACTCGCAG+AGG | - | chr5.3:75968482-75968501 | None:intergenic | 45.0% | |
GATGTCCTTGCGTTCTTTCT+TGG | + | chr5.3:75967464-75967483 | MS.gene81436:intron | 45.0% | |
GCAATAGAATCATCCAGCTC+TGG | - | chr5.3:75969302-75969321 | None:intergenic | 45.0% | |
GCATGGAAGAGAATGTAGAG+TGG | - | chr5.3:75967134-75967153 | None:intergenic | 45.0% | |
TATGCGAGGACTGTTACGAA+GGG | + | chr5.3:75966925-75966944 | MS.gene81436:intron | 45.0% | |
TGGCAAGCAGGAAAATCTCA+AGG | + | chr5.3:75968984-75969003 | MS.gene81436:CDS | 45.0% | |
TGTTACTGACAGAGGACTAC+AGG | + | chr5.3:75968362-75968381 | MS.gene81436:intron | 45.0% | |
TTCGTCCTGGAAAAAAGGTC+CGG | + | chr5.3:75967312-75967331 | MS.gene81436:CDS | 45.0% | |
TTTCCTGAAACATGGCAAGC+AGG | + | chr5.3:75968972-75968991 | MS.gene81436:CDS | 45.0% | |
TTTCCTGCTTGCCATGTTTC+AGG | - | chr5.3:75968978-75968997 | None:intergenic | 45.0% | |
!! | GGTCCGGAAAGTATTCTTGT+TGG | + | chr5.3:75967328-75967347 | MS.gene81436:CDS | 45.0% |
!!! | ACTTTCCGGACCTTTTTTCC+AGG | - | chr5.3:75967320-75967339 | None:intergenic | 45.0% |
!! | AATTATAAAATACATATAAA+AGG | - | chr5.3:75968612-75968631 | None:intergenic | 5.0% |
CAGCAGAGATTTACCAGAGC+TGG | + | chr5.3:75969286-75969305 | MS.gene81436:CDS | 50.0% | |
GTATGCGAGGACTGTTACGA+AGG | + | chr5.3:75966924-75966943 | MS.gene81436:intron | 50.0% | |
TGGATGTACCACAGTGCAAC+AGG | + | chr5.3:75969337-75969356 | MS.gene81436:intron | 50.0% | |
TGTTGCACTGTGGTACATCC+AGG | - | chr5.3:75969338-75969357 | None:intergenic | 50.0% | |
! | GTTACTGGAAGGGCTTTTGC+AGG | + | chr5.3:75967909-75967928 | MS.gene81436:intron | 50.0% |
CAGGTACCTGGATTTCGTCC+TGG | + | chr5.3:75967299-75967318 | MS.gene81436:intron | 55.0% | |
CAGTCCTCGCATACCAGTGA+TGG | - | chr5.3:75966918-75966937 | None:intergenic | 55.0% | |
GGTACCATCACTGGTATGCG+AGG | + | chr5.3:75966911-75966930 | MS.gene81436:CDS | 55.0% | |
!! | GCATGTGGAGGTACCATCAC+TGG | + | chr5.3:75966902-75966921 | MS.gene81436:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 75966899 | 75970493 | 75966899 | ID=MS.gene81436 |
chr5.3 | mRNA | 75966899 | 75970493 | 75966899 | ID=MS.gene81436.t1;Parent=MS.gene81436 |
chr5.3 | exon | 75966899 | 75966936 | 75966899 | ID=MS.gene81436.t1.exon1;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75966899 | 75966936 | 75966899 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75967302 | 75967369 | 75967302 | ID=MS.gene81436.t1.exon2;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75967302 | 75967369 | 75967302 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75968271 | 75968345 | 75968271 | ID=MS.gene81436.t1.exon3;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75968271 | 75968345 | 75968271 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75968675 | 75968762 | 75968675 | ID=MS.gene81436.t1.exon4;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75968675 | 75968762 | 75968675 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75968872 | 75969005 | 75968872 | ID=MS.gene81436.t1.exon5;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75968872 | 75969005 | 75968872 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75969263 | 75969319 | 75969263 | ID=MS.gene81436.t1.exon6;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75969263 | 75969319 | 75969263 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75969461 | 75969516 | 75969461 | ID=MS.gene81436.t1.exon7;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75969461 | 75969516 | 75969461 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75970093 | 75970148 | 75970093 | ID=MS.gene81436.t1.exon8;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75970093 | 75970148 | 75970093 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
chr5.3 | exon | 75970465 | 75970493 | 75970465 | ID=MS.gene81436.t1.exon9;Parent=MS.gene81436.t1 |
chr5.3 | CDS | 75970465 | 75970493 | 75970465 | ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1 |
Gene Sequence |
Protein sequence |