AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81436


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 35 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCCTTGATTCTATAAT+TGG 0.141614 5.3:+75968913 MS.gene81436:CDS
TTTCCTGCTTGCCATGTTTC+AGG 0.195437 5.3:-75968975 None:intergenic
TAGCTGTTTGCTCTATCTCT+TGG 0.323366 5.3:-75969487 None:intergenic
CTTGATTCTATAATTGGAAT+TGG 0.335719 5.3:+75968919 MS.gene81436:CDS
AGTATTCTTGTTGGTTATGT+GGG 0.365092 5.3:+75967337 MS.gene81436:CDS
TGGCAGTTGGTGACATATAT+AGG 0.388142 5.3:+75970125 MS.gene81436:CDS
CAGCAGAGATTTACCAGAGC+TGG 0.405981 5.3:+75969286 MS.gene81436:CDS
TAACCAACAAGAATACTTTC+CGG 0.419451 5.3:-75967331 None:intergenic
AAGTATTCTTGTTGGTTATG+TGG 0.444352 5.3:+75967336 MS.gene81436:CDS
GGTCCGGAAAGTATTCTTGT+TGG 0.453758 5.3:+75967328 MS.gene81436:CDS
CGAGGAACGTGTAAAGGAAC+AGG 0.479197 5.3:+75970472 MS.gene81436:CDS
ATACGACGAGGAACGTGTAA+AGG 0.502907 5.3:+75970466 MS.gene81436:CDS
TGTTTACTTCAACAGGTACC+TGG 0.509965 5.3:+75967287 MS.gene81436:intron
TTTCCTGAAACATGGCAAGC+AGG 0.517167 5.3:+75968972 MS.gene81436:CDS
ATTCCTTCTGCTGAAAGTAA+AGG 0.519175 5.3:+75968741 MS.gene81436:CDS
CTACCTTTACTTTCAGCAGA+AGG 0.525053 5.3:-75968744 None:intergenic
TCTATAATTGGAATTGGTCG+AGG 0.525412 5.3:+75968925 MS.gene81436:CDS
CAATTCCAATTATAGAATCA+AGG 0.531449 5.3:-75968918 None:intergenic
GATATTTGATTCTTGATCAA+CGG 0.532623 5.3:-75968712 None:intergenic
TATATATGTCACCAACTGCC+AGG 0.537928 5.3:-75970123 None:intergenic
GCAATAGAATCATCCAGCTC+TGG 0.538008 5.3:-75969299 None:intergenic
CAGGTACCTGGATTTCGTCC+TGG 0.538561 5.3:+75967299 MS.gene81436:intron
GCATGTGGAGGTACCATCAC+TGG 0.547973 5.3:+75966902 MS.gene81436:CDS
ATCAAACAGAACCTGGCAGT+TGG 0.559239 5.3:+75970112 MS.gene81436:CDS
AAATTTGATCAAACAGAACC+TGG 0.587535 5.3:+75970105 MS.gene81436:CDS
GTATTCTTGTTGGTTATGTG+GGG 0.588330 5.3:+75967338 MS.gene81436:CDS
AAGAGATAGAGCAAACAGCT+AGG 0.593034 5.3:+75969489 MS.gene81436:CDS
ATTATAGAATCAAGGAAACC+TGG 0.599565 5.3:-75968910 None:intergenic
CAGTCCTCGCATACCAGTGA+TGG 0.604531 5.3:-75966915 None:intergenic
GATGGTGAAATATTAGTACC+AGG 0.615164 5.3:+75968892 MS.gene81436:CDS
CCTGCAGGTTAGATTGCATG+TGG 0.627284 5.3:+75966887 None:intergenic
TGGCAAGCAGGAAAATCTCA+AGG 0.629089 5.3:+75968984 MS.gene81436:CDS
GCAGGTTAGATTGCATGTGG+AGG 0.673127 5.3:+75966890 None:intergenic
GGTACCATCACTGGTATGCG+AGG 0.674391 5.3:+75966911 MS.gene81436:CDS
GTCAAAACAAGAATACGACG+AGG 0.783491 5.3:+75970454 MS.gene81436:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTTGTTCTTATT+TGG + chr5.3:75969969-75969988 MS.gene81436:intron 10.0%
!! AAAATACATATAAAAGGAAA+TGG - chr5.3:75968606-75968625 None:intergenic 15.0%
!! AGTCTATTTAGTAAATTATT+TGG + chr5.3:75970338-75970357 MS.gene81436:intron 15.0%
!! ATTAAGAAACCAATTAAAAA+TGG - chr5.3:75968438-75968457 None:intergenic 15.0%
!!! TTTTCTTTTCCATTTTTAAT+TGG + chr5.3:75968426-75968445 MS.gene81436:intron 15.0%
!!! TTTTTTTTTCTTTCTTTTTC+TGG + chr5.3:75969703-75969722 MS.gene81436:intron 15.0%
!! AAAGTTATTACTGAAAAATG+TGG + chr5.3:75967821-75967840 MS.gene81436:intron 20.0%
!! ATACTCATAAAATAGAGAAA+AGG + chr5.3:75968084-75968103 MS.gene81436:intron 20.0%
!! ATGATTTCTGATATCTAAAT+TGG + chr5.3:75967099-75967118 MS.gene81436:intron 20.0%
!! TAAAACATATGAGAGAAATA+TGG - chr5.3:75968542-75968561 None:intergenic 20.0%
!! TAGTAAACTTGTATATGATA+TGG - chr5.3:75967203-75967222 None:intergenic 20.0%
!!! ACATTTTTCAGTAATAACTT+TGG - chr5.3:75967822-75967841 None:intergenic 20.0%
!!! AGCATAATAGTTTTTTCTTT+TGG + chr5.3:75969083-75969102 MS.gene81436:intron 20.0%
!!! AGTTACTAAATTTTCTGATA+TGG + chr5.3:75967945-75967964 MS.gene81436:intron 20.0%
!!! ATCAGAAATCATTTAATTTC+TGG - chr5.3:75968230-75968249 None:intergenic 20.0%
!!! CAATTTTGTTTTATAGTTAC+TGG + chr5.3:75967894-75967913 MS.gene81436:intron 20.0%
!!! TTTTCTGAATGAATTTTGTT+TGG - chr5.3:75967045-75967064 None:intergenic 20.0%
!!! TTTTTTTCCTTTAAGATGTT+GGG - chr5.3:75969925-75969944 None:intergenic 20.0%
!!! TTTTTTTTCCTTTAAGATGT+TGG - chr5.3:75969926-75969945 None:intergenic 20.0%
! AAAACTATTATGCTGTATGT+TGG - chr5.3:75969077-75969096 None:intergenic 25.0%
! AAACTTGTATATGATATGGT+AGG - chr5.3:75967199-75967218 None:intergenic 25.0%
! AACTTGTATATGATATGGTA+GGG - chr5.3:75967198-75967217 None:intergenic 25.0%
! AGCATAAATCAATAATACCT+TGG - chr5.3:75966975-75966994 None:intergenic 25.0%
! ATAGATTCTGAACAATTGTT+TGG - chr5.3:75968519-75968538 None:intergenic 25.0%
! ATTTCTGATATCTAAATTGG+AGG + chr5.3:75967102-75967121 MS.gene81436:intron 25.0%
! CAATTCCAATTATAGAATCA+AGG - chr5.3:75968921-75968940 None:intergenic 25.0%
! CATCTGAAAAAGAATTTAGA+AGG + chr5.3:75968311-75968330 MS.gene81436:CDS 25.0%
! CTAAGTAACATTACATCATT+AGG + chr5.3:75969550-75969569 MS.gene81436:intron 25.0%
! CTTGATTCTATAATTGGAAT+TGG + chr5.3:75968919-75968938 MS.gene81436:CDS 25.0%
! GATATTTGATTCTTGATCAA+CGG - chr5.3:75968715-75968734 None:intergenic 25.0%
! GTAAATATGATGAATATGAC+TGG - chr5.3:75967584-75967603 None:intergenic 25.0%
! TCACATACATGTATAGTTTA+TGG + chr5.3:75969127-75969146 MS.gene81436:intron 25.0%
! TCTATACAAATAGTTAACTC+AGG + chr5.3:75970190-75970209 MS.gene81436:intron 25.0%
! TTAACAATGTTTACTTCAAC+AGG + chr5.3:75967280-75967299 MS.gene81436:intron 25.0%
! TTGTATACAGACTCAAAAAA+AGG - chr5.3:75968056-75968075 None:intergenic 25.0%
!! TACTAAATTTTCTGATATGG+AGG + chr5.3:75967948-75967967 MS.gene81436:intron 25.0%
!! TACTGAAAAATGTGGATTAT+TGG + chr5.3:75967829-75967848 MS.gene81436:intron 25.0%
!! TATACACTCATATCATCTTT+TGG - chr5.3:75970244-75970263 None:intergenic 25.0%
!! TTTGTGATAGCAAGTTATTT+TGG + chr5.3:75968798-75968817 MS.gene81436:intron 25.0%
!!! ATATGTTTTATTTAGTCGCA+GGG + chr5.3:75968552-75968571 MS.gene81436:intron 25.0%
!!! TTAGCTTTTTAGACAATGTT+GGG + chr5.3:75967490-75967509 MS.gene81436:intron 25.0%
!!! TTGTGATAGCAAGTTATTTT+GGG + chr5.3:75968799-75968818 MS.gene81436:intron 25.0%
!!! TTGTGCGTATTTAATTTTAC+AGG + chr5.3:75968653-75968672 MS.gene81436:intron 25.0%
!!! TTGTTTTATAGTTACTGGAA+GGG + chr5.3:75967899-75967918 MS.gene81436:intron 25.0%
!!! TTTGTTTTATAGTTACTGGA+AGG + chr5.3:75967898-75967917 MS.gene81436:intron 25.0%
AAATTTGATCAAACAGAACC+TGG + chr5.3:75970105-75970124 MS.gene81436:CDS 30.0%
AACATCATACTATGTTATGC+AGG + chr5.3:75968850-75968869 MS.gene81436:intron 30.0%
AAGATATCCGAGAGAATAAT+AGG - chr5.3:75967977-75967996 None:intergenic 30.0%
AATAACTTTGGACAAACGAT+TGG - chr5.3:75967810-75967829 None:intergenic 30.0%
ATACATGTATGTGAACAAGT+TGG - chr5.3:75969121-75969140 None:intergenic 30.0%
ATGCTCAAGATATTCATTCA+CGG - chr5.3:75970066-75970085 None:intergenic 30.0%
ATTATAGAATCAAGGAAACC+TGG - chr5.3:75968913-75968932 None:intergenic 30.0%
ATTATTCTCTCGGATATCTT+AGG + chr5.3:75967977-75967996 MS.gene81436:intron 30.0%
CATATCGAAAAAATGTTGTG+AGG - chr5.3:75969624-75969643 None:intergenic 30.0%
CGTACTATAAAGATGTTTGT+TGG + chr5.3:75967617-75967636 MS.gene81436:intron 30.0%
CTTAGGTAATCAATACGTTA+CGG + chr5.3:75967994-75968013 MS.gene81436:intron 30.0%
CTTTATCCAATCAGAAAACT+TGG + chr5.3:75969896-75969915 MS.gene81436:intron 30.0%
GAATATCTTGAGCATTCATA+AGG + chr5.3:75970071-75970090 MS.gene81436:intron 30.0%
GGTTTCCTTGATTCTATAAT+TGG + chr5.3:75968913-75968932 MS.gene81436:CDS 30.0%
TAACCAACAAGAATACTTTC+CGG - chr5.3:75967334-75967353 None:intergenic 30.0%
TATACAGACTCAAAAAAAGG+AGG - chr5.3:75968053-75968072 None:intergenic 30.0%
TCAATACCTGCATTTCTAAT+AGG - chr5.3:75969860-75969879 None:intergenic 30.0%
TGATGCATACAAATACTTGA+AGG + chr5.3:75968249-75968268 MS.gene81436:intron 30.0%
TGATTGTGAGTAAAATTCTC+CGG + chr5.3:75969425-75969444 MS.gene81436:intron 30.0%
TGTCCATGATAGTAAAATTG+TGG + chr5.3:75967693-75967712 MS.gene81436:intron 30.0%
! AAGTATTCTTGTTGGTTATG+TGG + chr5.3:75967336-75967355 MS.gene81436:CDS 30.0%
! AGTATTCTTGTTGGTTATGT+GGG + chr5.3:75967337-75967356 MS.gene81436:CDS 30.0%
! CAGCATGTTTTCTTAAAAGA+GGG - chr5.3:75967231-75967250 None:intergenic 30.0%
! TCATATCATCTTTTGGCAAT+GGG - chr5.3:75970237-75970256 None:intergenic 30.0%
! TCTCCACAATTTTACTATCA+TGG - chr5.3:75967699-75967718 None:intergenic 30.0%
!! AGGATTCAATTTTGATACAG+AGG + chr5.3:75968870-75968889 MS.gene81436:intron 30.0%
!! GCGTATTTAATTTTACAGGT+CGG + chr5.3:75968657-75968676 MS.gene81436:intron 30.0%
!! TGTGATAGCAAGTTATTTTG+GGG + chr5.3:75968800-75968819 MS.gene81436:intron 30.0%
!! TTCAATTTTGATACAGAGGA+TGG + chr5.3:75968874-75968893 MS.gene81436:CDS 30.0%
!!! CATATGTTTTATTTAGTCGC+AGG + chr5.3:75968551-75968570 MS.gene81436:intron 30.0%
!!! GTTAGCTTTTTAGACAATGT+TGG + chr5.3:75967489-75967508 MS.gene81436:intron 30.0%
ACATCCAGGATAAGTTTATC+AGG - chr5.3:75969324-75969343 None:intergenic 35.0%
ACTATGACAATTGCACTTGA+GGG - chr5.3:75969374-75969393 None:intergenic 35.0%
AGATATTCATTCACGGACTT+TGG - chr5.3:75970059-75970078 None:intergenic 35.0%
ATATAGGCGTGAAAATATGC+AGG + chr5.3:75970141-75970160 MS.gene81436:intron 35.0%
ATTCCTTCTGCTGAAAGTAA+AGG + chr5.3:75968741-75968760 MS.gene81436:CDS 35.0%
ATTGCCTGATAAACTTATCC+TGG + chr5.3:75969317-75969336 MS.gene81436:intron 35.0%
CATACACAAACACAGATCAA+AGG - chr5.3:75969181-75969200 None:intergenic 35.0%
CATGTTTCAGGAAAAACAAG+GGG - chr5.3:75968966-75968985 None:intergenic 35.0%
CCATGTTTCAGGAAAAACAA+GGG - chr5.3:75968967-75968986 None:intergenic 35.0%
CGAACTTTGTAAACTCAACT+AGG - chr5.3:75966952-75966971 None:intergenic 35.0%
CTAACAATAAGTCTTTGACC+TGG - chr5.3:75969460-75969479 None:intergenic 35.0%
CTCAATCAGATTAAACTGAG+TGG - chr5.3:75970271-75970290 None:intergenic 35.0%
GAAACACATCATTATGCACA+AGG - chr5.3:75969660-75969679 None:intergenic 35.0%
GAAGCTAGAGAACAACATAT+AGG - chr5.3:75970384-75970403 None:intergenic 35.0%
GAGGATACCTATTATTCTCT+CGG + chr5.3:75967967-75967986 MS.gene81436:intron 35.0%
GATGGTGAAATATTAGTACC+AGG + chr5.3:75968892-75968911 MS.gene81436:CDS 35.0%
GCTTCTCTTTCATTTCTAAC+AGG + chr5.3:75969241-75969260 MS.gene81436:intron 35.0%
GGGAGTAAAAATGTTCACAA+AGG + chr5.3:75967358-75967377 MS.gene81436:intron 35.0%
TAACAAGTCCTCATGTCAAA+AGG - chr5.3:75967740-75967759 None:intergenic 35.0%
TACTATGACAATTGCACTTG+AGG - chr5.3:75969375-75969394 None:intergenic 35.0%
TATCATGGACATCGATAATG+TGG - chr5.3:75967684-75967703 None:intergenic 35.0%
TCTACCTTGTTCATCAAACA+AGG - chr5.3:75969820-75969839 None:intergenic 35.0%
TCTATAATTGGAATTGGTCG+AGG + chr5.3:75968925-75968944 MS.gene81436:CDS 35.0%
TCTCTTCCATGCAAAATTTG+AGG + chr5.3:75967142-75967161 MS.gene81436:intron 35.0%
TGCTTCCGTTAAAGTTCAAT+GGG - chr5.3:75969212-75969231 None:intergenic 35.0%
TTGACGTTTGAATTCAGCAA+TGG - chr5.3:75970439-75970458 None:intergenic 35.0%
TTGCTTCCGTTAAAGTTCAA+TGG - chr5.3:75969213-75969232 None:intergenic 35.0%
TTGGATTCCCAACATCTTAA+AGG + chr5.3:75969915-75969934 MS.gene81436:intron 35.0%
TTGTGAGGTACATTCTAATC+TGG - chr5.3:75969609-75969628 None:intergenic 35.0%
! ATGAAATGCCTTTTGACATG+AGG + chr5.3:75967729-75967748 MS.gene81436:intron 35.0%
! CAATCCTTGTTTGATGAACA+AGG + chr5.3:75969813-75969832 MS.gene81436:intron 35.0%
! CAGTAACCTCAAATTTTGCA+TGG - chr5.3:75967151-75967170 None:intergenic 35.0%
! CTCATATCATCTTTTGGCAA+TGG - chr5.3:75970238-75970257 None:intergenic 35.0%
! GCAGCATGTTTTCTTAAAAG+AGG - chr5.3:75967232-75967251 None:intergenic 35.0%
! GTATTCTTGTTGGTTATGTG+GGG + chr5.3:75967338-75967357 MS.gene81436:CDS 35.0%
!! ATGCAGGTATTGATTCAAGT+AGG + chr5.3:75969867-75969886 MS.gene81436:intron 35.0%
!! CTCGCTTATTTTCACTTTTC+AGG + chr5.3:75968181-75968200 MS.gene81436:intron 35.0%
AAAACTAACTGAAGAGCAGC+TGG + chr5.3:75970019-75970038 MS.gene81436:intron 40.0%
AACAGCGGTATGTTGTAATC+TGG + chr5.3:75967427-75967446 MS.gene81436:intron 40.0%
AACATCCAAGAAAGAACGCA+AGG - chr5.3:75967472-75967491 None:intergenic 40.0%
AAGAGATAGAGCAAACAGCT+AGG + chr5.3:75969489-75969508 MS.gene81436:CDS 40.0%
ACAAGTGTCAGTTAGTTGAC+TGG - chr5.3:75968407-75968426 None:intergenic 40.0%
ACGAGCCCATTGAACTTTAA+CGG + chr5.3:75969204-75969223 MS.gene81436:intron 40.0%
ACGATCGAGCTCAATATTTG+AGG + chr5.3:75967383-75967402 MS.gene81436:intron 40.0%
ACGCAAGGACATCAAAAATG+AGG - chr5.3:75967457-75967476 None:intergenic 40.0%
ATCCAGCCTATTAGAAATGC+AGG + chr5.3:75969851-75969870 MS.gene81436:intron 40.0%
ATCGAGCTCAATATTTGAGG+AGG + chr5.3:75967386-75967405 MS.gene81436:intron 40.0%
ATCTGCAGTGTAGAAGTCAT+CGG - chr5.3:75968142-75968161 None:intergenic 40.0%
CATGAGTGATTCCTTGATCA+TGG + chr5.3:75967540-75967559 MS.gene81436:intron 40.0%
CATGATCAAGGAATCACTCA+TGG - chr5.3:75967542-75967561 None:intergenic 40.0%
CTACCTTTACTTTCAGCAGA+AGG - chr5.3:75968747-75968766 None:intergenic 40.0%
CTACTGAAGACATCATCAAG+AGG + chr5.3:75970404-75970423 MS.gene81436:intron 40.0%
CTGAAAGTTGTTACTGACAG+AGG + chr5.3:75968354-75968373 MS.gene81436:intron 40.0%
CTGTTTACTAGCCATGATCA+AGG - chr5.3:75967554-75967573 None:intergenic 40.0%
CTTCTGCTGAAAGTAAAGGT+AGG + chr5.3:75968745-75968764 MS.gene81436:intron 40.0%
GAACAAGGTAGACAGCTATA+TGG + chr5.3:75969828-75969847 MS.gene81436:intron 40.0%
GAGGTACATTCTAATCTGGA+AGG - chr5.3:75969605-75969624 None:intergenic 40.0%
GCCATGTTTCAGGAAAAACA+AGG - chr5.3:75968968-75968987 None:intergenic 40.0%
GTCAAAACAAGAATACGACG+AGG + chr5.3:75970454-75970473 MS.gene81436:intron 40.0%
TACCTGCATTTCTAATAGGC+TGG - chr5.3:75969856-75969875 None:intergenic 40.0%
TAGCTGTTTGCTCTATCTCT+TGG - chr5.3:75969490-75969509 None:intergenic 40.0%
TAGGTGATGTGCTTGCAAAA+TGG + chr5.3:75968764-75968783 MS.gene81436:intron 40.0%
TATATATGTCACCAACTGCC+AGG - chr5.3:75970126-75970145 None:intergenic 40.0%
TGAGTTTACAAAGTTCGCCA+AGG + chr5.3:75966955-75966974 MS.gene81436:intron 40.0%
TGGACATCGATAATGTGGAA+TGG - chr5.3:75967679-75967698 None:intergenic 40.0%
TGGATTTCGTCCTGGAAAAA+AGG + chr5.3:75967307-75967326 MS.gene81436:CDS 40.0%
TGTTTACTTCAACAGGTACC+TGG + chr5.3:75967287-75967306 MS.gene81436:intron 40.0%
TTGTGTTAGTGCAATGTGCA+TGG - chr5.3:75967644-75967663 None:intergenic 40.0%
TTTGACCTGGAAATTCATGC+CGG - chr5.3:75969447-75969466 None:intergenic 40.0%
! GGGAATCCAAGTTTTCTGAT+TGG - chr5.3:75969905-75969924 None:intergenic 40.0%
!! CTCTTGATGATGTCTTCAGT+AGG - chr5.3:75970406-75970425 None:intergenic 40.0%
!! TGGCAGTTGGTGACATATAT+AGG + chr5.3:75970125-75970144 MS.gene81436:CDS 40.0%
!!! CCCTTGTTTTTCCTGAAACA+TGG + chr5.3:75968964-75968983 MS.gene81436:CDS 40.0%
!!! TTTTTTCCAGGACGAAATCC+AGG - chr5.3:75967308-75967327 None:intergenic 40.0%
AAAAGTCACCTGTTGCACTG+TGG - chr5.3:75969348-75969367 None:intergenic 45.0%
ACTTTCACACGCTGTAACAG+CGG + chr5.3:75967412-75967431 MS.gene81436:intron 45.0%
ATACGACGAGGAACGTGTAA+AGG + chr5.3:75970466-75970485 MS.gene81436:CDS 45.0%
ATCAAACAGAACCTGGCAGT+TGG + chr5.3:75970112-75970131 MS.gene81436:CDS 45.0%
ATTCTCCGGCATGAATTTCC+AGG + chr5.3:75969439-75969458 MS.gene81436:intron 45.0%
CGTTATAAAACGACTCGCAG+AGG - chr5.3:75968482-75968501 None:intergenic 45.0%
GATGTCCTTGCGTTCTTTCT+TGG + chr5.3:75967464-75967483 MS.gene81436:intron 45.0%
GCAATAGAATCATCCAGCTC+TGG - chr5.3:75969302-75969321 None:intergenic 45.0%
GCATGGAAGAGAATGTAGAG+TGG - chr5.3:75967134-75967153 None:intergenic 45.0%
TATGCGAGGACTGTTACGAA+GGG + chr5.3:75966925-75966944 MS.gene81436:intron 45.0%
TGGCAAGCAGGAAAATCTCA+AGG + chr5.3:75968984-75969003 MS.gene81436:CDS 45.0%
TGTTACTGACAGAGGACTAC+AGG + chr5.3:75968362-75968381 MS.gene81436:intron 45.0%
TTCGTCCTGGAAAAAAGGTC+CGG + chr5.3:75967312-75967331 MS.gene81436:CDS 45.0%
TTTCCTGAAACATGGCAAGC+AGG + chr5.3:75968972-75968991 MS.gene81436:CDS 45.0%
TTTCCTGCTTGCCATGTTTC+AGG - chr5.3:75968978-75968997 None:intergenic 45.0%
!! GGTCCGGAAAGTATTCTTGT+TGG + chr5.3:75967328-75967347 MS.gene81436:CDS 45.0%
!!! ACTTTCCGGACCTTTTTTCC+AGG - chr5.3:75967320-75967339 None:intergenic 45.0%
!! AATTATAAAATACATATAAA+AGG - chr5.3:75968612-75968631 None:intergenic 5.0%
CAGCAGAGATTTACCAGAGC+TGG + chr5.3:75969286-75969305 MS.gene81436:CDS 50.0%
GTATGCGAGGACTGTTACGA+AGG + chr5.3:75966924-75966943 MS.gene81436:intron 50.0%
TGGATGTACCACAGTGCAAC+AGG + chr5.3:75969337-75969356 MS.gene81436:intron 50.0%
TGTTGCACTGTGGTACATCC+AGG - chr5.3:75969338-75969357 None:intergenic 50.0%
! GTTACTGGAAGGGCTTTTGC+AGG + chr5.3:75967909-75967928 MS.gene81436:intron 50.0%
CAGGTACCTGGATTTCGTCC+TGG + chr5.3:75967299-75967318 MS.gene81436:intron 55.0%
CAGTCCTCGCATACCAGTGA+TGG - chr5.3:75966918-75966937 None:intergenic 55.0%
GGTACCATCACTGGTATGCG+AGG + chr5.3:75966911-75966930 MS.gene81436:CDS 55.0%
!! GCATGTGGAGGTACCATCAC+TGG + chr5.3:75966902-75966921 MS.gene81436:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 75966899 75970493 75966899 ID=MS.gene81436
chr5.3 mRNA 75966899 75970493 75966899 ID=MS.gene81436.t1;Parent=MS.gene81436
chr5.3 exon 75966899 75966936 75966899 ID=MS.gene81436.t1.exon1;Parent=MS.gene81436.t1
chr5.3 CDS 75966899 75966936 75966899 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75967302 75967369 75967302 ID=MS.gene81436.t1.exon2;Parent=MS.gene81436.t1
chr5.3 CDS 75967302 75967369 75967302 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75968271 75968345 75968271 ID=MS.gene81436.t1.exon3;Parent=MS.gene81436.t1
chr5.3 CDS 75968271 75968345 75968271 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75968675 75968762 75968675 ID=MS.gene81436.t1.exon4;Parent=MS.gene81436.t1
chr5.3 CDS 75968675 75968762 75968675 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75968872 75969005 75968872 ID=MS.gene81436.t1.exon5;Parent=MS.gene81436.t1
chr5.3 CDS 75968872 75969005 75968872 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75969263 75969319 75969263 ID=MS.gene81436.t1.exon6;Parent=MS.gene81436.t1
chr5.3 CDS 75969263 75969319 75969263 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75969461 75969516 75969461 ID=MS.gene81436.t1.exon7;Parent=MS.gene81436.t1
chr5.3 CDS 75969461 75969516 75969461 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75970093 75970148 75970093 ID=MS.gene81436.t1.exon8;Parent=MS.gene81436.t1
chr5.3 CDS 75970093 75970148 75970093 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
chr5.3 exon 75970465 75970493 75970465 ID=MS.gene81436.t1.exon9;Parent=MS.gene81436.t1
chr5.3 CDS 75970465 75970493 75970465 ID=cds.MS.gene81436.t1;Parent=MS.gene81436.t1
Gene Sequence

>MS.gene81436

ATTGCATGTGGAGGTACCATCACTGGTATGCGAGGACTGTTACGAAGGGTCCTAGTTGAGTTTACAAAGTTCGCCAAGGTATTATTGATTTATGCTTACATTATGTTTATAGAATTATATTATATATCTTTCTCGTATTCAATCCAAACAAAATTCATTCAGAAAATTGTTTTTGTCTGCGAATAGTTAATGACTAGTTTATGATTTCTGATATCTAAATTGGAGGCTATAACCACTCTACATTCTCTTCCATGCAAAATTTGAGGTTACTGAATTTTACAATTTTAAGATTTTTACCCTACCATATCATATACAAGTTTACTATTTCACCCTCTTTTAAGAAAACATGCTGCTTATAAGTTATAGTAGTAATGAGCTAATTTAACAATGTTTACTTCAACAGGTACCTGGATTTCGTCCTGGAAAAAAGGTCCGGAAAGTATTCTTGTTGGTTATGTGGGGAGTAAAAATGTTCACAAAGGCTACGATCGAGCTCAATATTTGAGGAGGAACACTTTCACACGCTGTAACAGCGGTATGTTGTAATCTGGTTTTCCTCATTTTTGATGTCCTTGCGTTCTTTCTTGGATGTTAGCTTTTTAGACAATGTTGGGTTCACTCTGCTTATTTGCAATTATATCCATGAGTGATTCCTTGATCATGGCTAGTAAACAGCTCTCTACCAGTCATATTCATCATATTTACTGAAATCTAGTTTCGTACTATAAAGATGTTTGTTGGTCCATGCACATTGCACTAACACAAACTGATAATCAACCATTCCACATTATCGATGTCCATGATAGTAAAATTGTGGAGATATATTTTCAATGAAATGCCTTTTGACATGAGGACTTGTTACTGCTAAAAAGATTTAATAATAATGATAATTATTTATTATAATTTTTCCAATCGTTTGTCCAAAGTTATTACTGAAAAATGTGGATTATTGGATCAAGTAATATTTTGATTCTTTCACTTGAACATCTTATAATCAATTTTGTTTTATAGTTACTGGAAGGGCTTTTGCAGGATTCTATACGTATAGTTACTAAATTTTCTGATATGGAGGATACCTATTATTCTCTCGGATATCTTAGGTAATCAATACGTTACGGTTTGAAATTCATTTTCAGTGACGCTCATTTCTTCCTCCTTTTTTTGAGTCTGTATACAAAGTTATCTATACTCATAAAATAGAGAAAAGGAAGATCATAATGAAGAATGCTCACATTATCAGCCGATGACTTCTACACTGCAGATTGTATTACTATTAATTACTCTCGCTTATTTTCACTTTTCAGGTATGATGTGATTGTGATGTTGCACCAGAAATTAAATGATTTCTGATGATGCATACAAATACTTGAAGGTTGTTGTTGAGATAGACAGTGAAATAGATGCTCACATAGCATCTGAAAAAGAATTTAGAAGGCGTTACAAGTCAGCTGTGTACTGAAAGTTGTTACTGACAGAGGACTACAGGTGATTGAATTTAATTTGTACCAGTCAACTAACTGACACTTGTTTTCTTTTCCATTTTTAATTGGTTTCTTAATAAAAATGCTATTCATGTCAAACCTCTGCGAGTCGTTTTATAACGTTTTCAAGTACATACCAAACAATTGTTCAGAATCTATCCATATTTCTCTCATATGTTTTATTTAGTCGCAGGGCTCGCAGCAAACTGTTTTCGTATGAATACCATTTCCTTTTATATGTATTTTATAATTTATACATCATCTTGATAATTATTGTGCGTATTTAATTTTACAGGTCGGTGATGTTGTTGTACTTGACATCTCAGCAACGACCGTTGATCAAGAATCAAATATCAAAAATATTCCTTCTGCTGAAAGTAAAGGTAGGTGATGTGCTTGCAAAATGGTATTTAACTGATTTGTGATAGCAAGTTATTTTGGGGTGATATATCATGATCATTTTTTCATCAAACATCATACTATGTTATGCAGGATTCAATTTTGATACAGAGGATGGTGAAATATTAGTACCAGGTTTCCTTGATTCTATAATTGGAATTGGTCGAGGCGAAACAAAGTCATTCCCCTTGTTTTTCCTGAAACATGGCAAGCAGGAAAATCTCAAGGTGTTCATGCTCAGTTTACTGTAAGTTCTAATGCTGAATCAAAAGATTAATTATTTTAAAAACACGAGCCAACATACAGCATAATAGTTTTTTCTTTTGGTTTTATAAGATACCAACTTGTTCACATACATGTATAGTTTATGGATTTTTGCTTTCATATAATTTTCTTGTACCTTTGATCTGTGTTTGTGTATGCACACGAGCCCATTGAACTTTAACGGAAGCAACTAATTGAGCTTCTCTTTCATTTCTAACAGGTTGAGTGCAAAGAACTTTTTTACAGCAGAGATTTACCAGAGCTGGATGATTCTATTGCCTGATAAACTTATCCTGGATGTACCACAGTGCAACAGGTGACTTTTTCTCCCTCAAGTGCAATTGTCATAGTAAAGTGTATACTGAAGAATTATTATATTTGTTGATTGTGAGTAAAATTCTCCGGCATGAATTTCCAGGTCAAAGACTTATTGTTAGAAAGATTCCAAGAGATAGAGCAAACAGCTAGGAACAAGCAACTGATAATGCTATATTAGATTCAGATCTTCTAAGTAACATTACATCATTAGGTAACAGTATTAAATTGAAATCTGTCTTGTCCTTCCAGATTAGAATGTACCTCACAACATTTTTTCGATATGCATGCTTCTTTTACCTTGTGCATAATGATGTGTTTCTGACATGAACACGCTTGAGTATTTTTTTTTTTCTTTCTTTTTCTGGTAGCTATATATTATATAATCATTCTTCAATTCTGACTTTTTCACTTAGTATTCATATTGTCATTTCAGATGTAGAAGTTGATATACTCAATCCTTGTTTGATGAACAAGGTAGACAGCTATATGGATCCAGCCTATTAGAAATGCAGGTATTGATTCAAGTAGGAACATTCTTTATCCAATCAGAAAACTTGGATTCCCAACATCTTAAAGGAAAAAAAAAAATCTCTCTCAAGCGCACACATTTATTTTATTTGTTCTTATTTGGCGCAATTTGTGATGATGCAGACAAAATAAAACTAACTGAAGAGCAGCTGGCTACTCTATCAAGTCCAAAGTCCGTGAATGAATATCTTGAGCATTCATAAGGAAAATATTTACAAATTTGATCAAACAGAACCTGGCAGTTGGTGACATATATAGGCGTGAAAATATGCAGGTATGCTTATCTGATTAAGATATGTATTCTATACAAATAGTTAACTCAGGTCATACTGACAATAAATATTTCCCATTGCCAAAAGATGATATGAGTGTATAAGCGCCACTCAGTTTAATCTGATTGAGAAATAACATTTGTTTTACATATCACATTATTTATTATTAAACTGTCTAGTCTATTTAGTAAATTATTTGGCTTATTAGAATAATTCTTTTCCTATATGTTGTTCTCTAGCTTCCTACTGAAGACATCATCAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACAAGAATACGACGAGGAACGTGTAAAGGAACAG

Protein sequence

>MS.gene81436.t1

IACGGTITGMRGLYLDFVLEKRSGKYSCWLCGEUKCCCUDRQUNRCSHSIUKRIUKALQVSRUCCCTUHLSNDRUSRIKYQKYSFCUKURIQFUYRGWUNISTRFPUFYNWNWSRRNKVIPLVFPETWQAGKSQGUVQRTFLQQRFTRAGUFYCQRLIVRKIPRDRANSUEQENIYKFDQTEPGSWUHIUAIRRGTCKGT