AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069525


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069525.t1 MTR_2g048680 92.233 309 24 0 1 309 1 309 0.0 592
MS.gene069525.t1 MTR_2g048680 93.976 166 10 0 144 309 64 229 4.31e-115 332
MS.gene069525.t1 MTR_5g022050 44.231 208 115 1 97 304 209 415 2.43e-54 183
MS.gene069525.t1 MTR_5g023090 47.647 170 89 0 138 307 283 452 6.25e-52 177
MS.gene069525.t1 MTR_5g022050 42.282 149 85 1 97 245 219 366 2.63e-30 117
MS.gene069525.t1 MTR_5g043640 36.232 138 88 0 147 284 89 226 1.17e-21 92.0
MS.gene069525.t1 MTR_5g043640 34.454 119 75 3 178 294 87 204 5.40e-15 73.6
MS.gene069525.t1 MTR_3g491870 39.091 110 61 3 193 298 246 353 2.16e-14 73.2
MS.gene069525.t1 MTR_6g027840 29.213 178 123 3 126 302 189 364 1.44e-12 68.2
MS.gene069525.t1 MTR_2g096760 30.719 153 93 2 132 271 30 182 1.42e-11 65.1
MS.gene069525.t1 MTR_5g026800 29.139 151 104 2 139 288 4 152 2.57e-11 63.2
MS.gene069525.t1 MTR_8g056020 30.631 111 77 0 161 271 242 352 2.85e-11 63.9
MS.gene069525.t1 MTR_1g062770 35.345 116 68 1 174 282 64 179 2.96e-11 62.4
MS.gene069525.t1 MTR_1g089180 28.662 157 89 3 136 270 274 429 6.44e-11 63.2
MS.gene069525.t1 MTR_5g026550 30.469 128 83 2 181 302 29 156 9.96e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069525.t1 AT5G40160 56.884 276 109 2 40 307 38 311 8.29e-106 311
MS.gene069525.t1 AT5G40160 54.580 262 105 3 40 293 38 293 1.14e-89 270
MS.gene069525.t1 AT5G66055 45.946 185 99 1 123 307 236 419 2.80e-51 175
MS.gene069525.t1 AT5G66055 42.029 138 79 1 111 247 222 359 2.97e-28 112
MS.gene069525.t1 AT2G03430 34.783 138 90 0 147 284 82 219 1.61e-18 83.6
MS.gene069525.t1 AT2G03430 28.814 177 119 4 130 301 29 203 3.03e-12 65.9
MS.gene069525.t1 AT2G25600 40.860 93 55 0 194 286 557 649 9.45e-14 72.4
MS.gene069525.t1 AT4G27780 37.113 97 58 1 193 286 242 338 7.16e-13 68.9
MS.gene069525.t1 AT5G53470 36.082 97 59 1 193 286 227 323 2.80e-12 67.0
MS.gene069525.t1 AT2G14255 32.624 141 92 2 150 287 93 233 3.81e-12 67.0
MS.gene069525.t1 AT5G13300 37.778 90 54 1 200 287 713 802 2.74e-11 64.7
MS.gene069525.t1 AT3G04710 31.847 157 101 4 132 287 108 259 4.38e-11 63.9
MS.gene069525.t1 AT3G04710 31.847 157 101 4 132 287 332 483 5.69e-11 63.5
MS.gene069525.t1 AT3G09890 35.514 107 62 1 183 282 75 181 6.01e-11 61.6

Find 57 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAATATAACTCCTAATT+TGG 0.193363 2.3:-42463118 MS.gene069525:CDS
TTCTACCACTAACTCCAAAT+TGG 0.206075 2.3:-42464089 MS.gene069525:CDS
TGCAGTATTTCTAGTTCTTC+TGG 0.234735 2.3:+42463141 None:intergenic
ATCATTTCAGATTTATAGTA+TGG 0.249386 2.3:-42462969 MS.gene069525:CDS
CCCAGGTTCCATGTTCTTGT+TGG 0.250535 2.3:+42463936 None:intergenic
GTGGAAACCGGTTCCCAATT+TGG 0.258601 2.3:+42464075 None:intergenic
TTGGAGTTAGTGGTAGAAAA+AGG 0.292511 2.3:+42464094 None:intergenic
GCACTTCATAAGGCGGTTAT+AGG 0.299638 2.3:-42462811 MS.gene069525:CDS
GAAAACATATATGGATTGTT+TGG 0.341709 2.3:-42464149 None:intergenic
CCAGGTTCCATGTTCTTGTT+GGG 0.349630 2.3:+42463937 None:intergenic
TGATATCGATTTCGTCAATA+AGG 0.377180 2.3:-42462924 MS.gene069525:intron
AGATAGATCGATAGAAAATA+AGG 0.384701 2.3:-42462366 MS.gene069525:intron
TCACTGTCACTACGAATATC+TGG 0.387326 2.3:+42463908 None:intergenic
TCTACCACTAACTCCAAATT+GGG 0.406754 2.3:-42464088 MS.gene069525:CDS
CTTGCTAGATTAATTAAGAT+AGG 0.413079 2.3:-42461709 MS.gene069525:CDS
GGTTCCCAATTTGGAGTTAG+TGG 0.425331 2.3:+42464084 None:intergenic
TTTGAACGGCAACATGCAAT+GGG 0.445663 2.3:+42462432 None:intergenic
ATAAATTTATTAGAAAGAAC+AGG 0.449639 2.3:+42464118 None:intergenic
CCCAACAAGAACATGGAACC+TGG 0.455702 2.3:-42463937 MS.gene069525:CDS
CTTTGAACGGCAACATGCAA+TGG 0.462361 2.3:+42462431 None:intergenic
ACTAACTCCAAATTGGGAAC+CGG 0.466891 2.3:-42464082 MS.gene069525:CDS
AGGTCTCACTGCACTTCATA+AGG 0.467266 2.3:-42462821 MS.gene069525:CDS
TGGAGCCCACTGCACTCTCT+TGG 0.471247 2.3:-42462995 MS.gene069525:CDS
TTGCACCTTTCCGTAAAAGA+TGG 0.475406 2.3:+42462767 None:intergenic
CTGGATGTAAGTATATGTTA+TGG 0.480205 2.3:-42461754 MS.gene069525:CDS
TCTGTATATTCTGTGGAAAC+CGG 0.482118 2.3:+42464063 None:intergenic
AATTTATCCACACCTTATCC+TGG 0.484529 2.3:+42462734 None:intergenic
AGAGACGCAGGACGAGTATG+AGG 0.486038 2.3:-42463819 MS.gene069525:CDS
TGCATGTTGCCGTTCAAAGC+CGG 0.486087 2.3:-42462427 MS.gene069525:CDS
TATCGATCTATCTGCGCCAT+TGG 0.492748 2.3:+42462376 None:intergenic
GACGAAGAAGATAAAAGCCT+TGG 0.496557 2.3:-42463872 MS.gene069525:CDS
ACGAATATCTGGTTCTTCCC+AGG 0.501030 2.3:+42463919 None:intergenic
CATTATAGAACTCAGTTGCC+TGG 0.505053 2.3:+42461685 None:intergenic
ATCTCTATTCCGGCTTTGAA+CGG 0.506075 2.3:+42462418 None:intergenic
AAGTCCTCATGTCCAGGATA+AGG 0.522498 2.3:-42462746 MS.gene069525:intron
TAATAATCGCTCAGGAAGGT+TGG 0.528902 2.3:-42462457 MS.gene069525:intron
TTGCTTTGCACCAACTTGAA+CGG 0.535506 2.3:+42462614 None:intergenic
AGGTGCAAGTCCTCATGTCC+AGG 0.541101 2.3:-42462752 MS.gene069525:CDS
AGATTAATTAAGATAGGTCC+AGG 0.543202 2.3:-42461703 MS.gene069525:CDS
CTTCATTATGCCGTTCAAGT+TGG 0.552276 2.3:-42462624 MS.gene069525:CDS
TTGCAAACCCAACAAGAACA+TGG 0.559818 2.3:-42463944 MS.gene069525:CDS
TATGAGGAGCGTATTAAGAA+AGG 0.561332 2.3:-42463803 MS.gene069525:intron
ATGGACAAGCTTCTTGAAAG+TGG 0.562294 2.3:-42462950 MS.gene069525:CDS
ACAGGAAGAGACAGAGACGC+AGG 0.581434 2.3:-42463831 MS.gene069525:CDS
TCAGGACGGGAAAACAGCAC+TGG 0.585587 2.3:-42461773 MS.gene069525:intron
ATAAGGAGAATTGCGAAGGT+CGG 0.595160 2.3:-42464006 MS.gene069525:CDS
CTATCTTAATTAATCTAGCA+AGG 0.596792 2.3:+42461710 None:intergenic
ATAAGCCAAGAGAGTGCAGT+GGG 0.619862 2.3:+42462990 None:intergenic
GATAAGCCAAGAGAGTGCAG+TGG 0.624182 2.3:+42462989 None:intergenic
CCAACAAGAACATGGAACCT+GGG 0.641739 2.3:-42463936 MS.gene069525:CDS
CACACCTTATCCTGGACATG+AGG 0.646294 2.3:+42462742 None:intergenic
GTTGCAATCAAATCAAGCAG+AGG 0.658547 2.3:-42463977 MS.gene069525:CDS
ACTTGAACGGCATAATGAAG+CGG 0.667600 2.3:+42462627 None:intergenic
TTGTACGTCTGTATATTCTG+TGG 0.683826 2.3:+42464056 None:intergenic
TCTCACTGCACTTCATAAGG+CGG 0.692716 2.3:-42462818 MS.gene069525:CDS
ATACAATGTTGATGTCAATG+TGG 0.742113 2.3:-42462571 MS.gene069525:CDS
TTGAACGGCAACATGCAATG+GGG 0.746359 2.3:+42462433 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATATATTGAATGA+TGG - chr2.3:42462582-42462601 MS.gene069525:CDS 10.0%
!! TGTTTATATATTTATTGATA+TGG - chr2.3:42463170-42463189 MS.gene069525:intron 10.0%
!!! ATATTTTTTTATTTACTCAT+TGG + chr2.3:42462573-42462592 None:intergenic 10.0%
!! AGAAAAAAAATATTAGATGA+GGG - chr2.3:42463598-42463617 MS.gene069525:intron 15.0%
!! ATAAATTTATTAGAAAGAAC+AGG + chr2.3:42461720-42461739 None:intergenic 15.0%
!! TAGAAAAAAAATATTAGATG+AGG - chr2.3:42463597-42463616 MS.gene069525:intron 15.0%
!!! TAACAAAAGTATCAATTTAT+AGG + chr2.3:42462648-42462667 None:intergenic 15.0%
!!! TCAGTCTAAATTTTAATAAT+TGG - chr2.3:42462238-42462257 MS.gene069525:intron 15.0%
!!! TTTTGATTGTCTAATTAATT+CGG + chr2.3:42463638-42463657 None:intergenic 15.0%
!! ATAAGATATGACAAAAAAGA+AGG - chr2.3:42462421-42462440 MS.gene069525:CDS 20.0%
!! ATAATAATCATACATGAGTA+TGG - chr2.3:42462171-42462190 MS.gene069525:intron 20.0%
!! ATCATTTCAGATTTATAGTA+TGG - chr2.3:42462866-42462885 MS.gene069525:intron 20.0%
!! TAATAATCATACATGAGTAT+GGG - chr2.3:42462172-42462191 MS.gene069525:intron 20.0%
!! TATATATTTATTGATATGGC+AGG - chr2.3:42463174-42463193 MS.gene069525:intron 20.0%
!! TCAATAATTAATATGCAACA+TGG - chr2.3:42463520-42463539 MS.gene069525:intron 20.0%
!! TTGTACTTTATACTTTCAAA+TGG - chr2.3:42462510-42462529 MS.gene069525:intron 20.0%
!!! AAACCTTTTAATCTAAGTAT+AGG + chr2.3:42462328-42462347 None:intergenic 20.0%
!!! AAATTATCTTATTTACGACT+AGG + chr2.3:42462983-42463002 None:intergenic 20.0%
!!! ACTTATACATACACTTTTAT+AGG - chr2.3:42463880-42463899 MS.gene069525:CDS 20.0%
!!! GATGATATTTTTTCCAAATT+AGG + chr2.3:42462733-42462752 None:intergenic 20.0%
! AATAAGATAATTTGATCGAC+AGG - chr2.3:42462990-42463009 MS.gene069525:CDS 25.0%
! ACAGAATATAACTCCTAATT+TGG - chr2.3:42462717-42462736 MS.gene069525:intron 25.0%
! AGATAGATCGATAGAAAATA+AGG - chr2.3:42463469-42463488 MS.gene069525:intron 25.0%
! AGTCAGTTATAAACTCAAAT+TGG - chr2.3:42463970-42463989 MS.gene069525:CDS 25.0%
! ATGTCATGATATTGAAAACT+GGG - chr2.3:42462097-42462116 MS.gene069525:intron 25.0%
! CTATCTTAATTAATCTAGCA+AGG + chr2.3:42464128-42464147 None:intergenic 25.0%
! CTTGCTAGATTAATTAAGAT+AGG - chr2.3:42464126-42464145 MS.gene069525:CDS 25.0%
! TAATAGTTCAGTTAATCAGT+TGG - chr2.3:42463664-42463683 MS.gene069525:intron 25.0%
! TATGTCATGATATTGAAAAC+TGG - chr2.3:42462096-42462115 MS.gene069525:intron 25.0%
! TTTACTATTAATAATCGCTC+AGG - chr2.3:42463370-42463389 MS.gene069525:intron 25.0%
! TTTCATATTAGTTGCAAACT+AGG + chr2.3:42463818-42463837 None:intergenic 25.0%
!! AATTTGAGTTTATAACTGAC+TGG + chr2.3:42463971-42463990 None:intergenic 25.0%
!! ATTACGTCTCTCTTTTTATA+AGG - chr2.3:42461812-42461831 MS.gene069525:intron 25.0%
!! GTTTTCAATATCATGACATA+CGG + chr2.3:42462096-42462115 None:intergenic 25.0%
!! TAATAATTGGTCTGATGTTT+GGG - chr2.3:42462251-42462270 MS.gene069525:intron 25.0%
!! TTAATAATTGGTCTGATGTT+TGG - chr2.3:42462250-42462269 MS.gene069525:intron 25.0%
!!! AATGGTTTTAAGCTTTGATA+AGG - chr2.3:42462528-42462547 MS.gene069525:intron 25.0%
!!! CAAAGCAATATTTTGAAAAC+TGG + chr2.3:42462468-42462487 None:intergenic 25.0%
!!! TCATGTTACTTTTTCTCTAT+TGG - chr2.3:42462067-42462086 MS.gene069525:intron 25.0%
AAGAAGGTTTACCAATTTCA+CGG - chr2.3:42462437-42462456 MS.gene069525:CDS 30.0%
AGATTAATTAAGATAGGTCC+AGG - chr2.3:42464132-42464151 MS.gene069525:CDS 30.0%
AGCCTTGGATTTAAAAATGA+TGG - chr2.3:42461978-42461997 MS.gene069525:intron 30.0%
ATACAATGTTGATGTCAATG+TGG - chr2.3:42463264-42463283 MS.gene069525:intron 30.0%
ATTAAAAGGTTTACAGTGAC+TGG - chr2.3:42462336-42462355 MS.gene069525:intron 30.0%
CCTTGGATTTAAAAATGATG+GGG - chr2.3:42461980-42461999 MS.gene069525:intron 30.0%
CTATCAATATAAGAAACGAG+TGG + chr2.3:42462399-42462418 None:intergenic 30.0%
CTGGATGTAAGTATATGTTA+TGG - chr2.3:42464081-42464100 MS.gene069525:CDS 30.0%
GCCTTGGATTTAAAAATGAT+GGG - chr2.3:42461979-42461998 MS.gene069525:intron 30.0%
GGTCCTATACTTAGATTAAA+AGG - chr2.3:42462322-42462341 MS.gene069525:intron 30.0%
GTGAACAACATATGAACATA+AGG + chr2.3:42463127-42463146 None:intergenic 30.0%
TATTTATTGATATGGCAGGA+TGG - chr2.3:42463178-42463197 MS.gene069525:intron 30.0%
TTAATTATTGAGCTCTGTAG+TGG + chr2.3:42463511-42463530 None:intergenic 30.0%
TTGCAAACTAGGTATTATGT+GGG + chr2.3:42463807-42463826 None:intergenic 30.0%
TTTCATGTATCCAGGAAAAA+TGG - chr2.3:42462820-42462839 MS.gene069525:CDS 30.0%
TTTGCACATTTCTTCTTTGT+TGG - chr2.3:42462484-42462503 MS.gene069525:intron 30.0%
! AGAGAGACGTAATTTTTGTT+TGG + chr2.3:42461805-42461824 None:intergenic 30.0%
! ATTTAAAAATGATGGGGAAC+AGG - chr2.3:42461986-42462005 MS.gene069525:intron 30.0%
! CTGTTATAAGCCATCTTTTA+CGG - chr2.3:42463058-42463077 MS.gene069525:intron 30.0%
! TCATTGATTGGTTATGTTTC+AGG - chr2.3:42464044-42464063 MS.gene069525:CDS 30.0%
! TGATACTTTTGTTAATGCAG+AGG - chr2.3:42462654-42462673 MS.gene069525:intron 30.0%
! TTTATAACTGACTGGTTCAA+AGG + chr2.3:42463963-42463982 None:intergenic 30.0%
! TTTTATAAGGAGAATTGCGA+AGG - chr2.3:42461825-42461844 MS.gene069525:intron 30.0%
! TTTTCGCTATATCTCTATTC+CGG + chr2.3:42463430-42463449 None:intergenic 30.0%
!! GCAATATTTTGAAAACTGGA+TGG + chr2.3:42462464-42462483 None:intergenic 30.0%
!! TGATATCGATTTCGTCAATA+AGG - chr2.3:42462911-42462930 MS.gene069525:intron 30.0%
!!! CAGTTTTACTTGCTGTATAT+GGG - chr2.3:42463344-42463363 MS.gene069525:intron 30.0%
!!! GAGTTATTCTTTTTTGCTTG+TGG - chr2.3:42464014-42464033 MS.gene069525:CDS 30.0%
!!! TCAGTTTTACTTGCTGTATA+TGG - chr2.3:42463343-42463362 MS.gene069525:intron 30.0%
AAAAATATTAGATGAGGGCC+AGG - chr2.3:42463603-42463622 MS.gene069525:intron 35.0%
AATTTATCCACACCTTATCC+TGG + chr2.3:42463104-42463123 None:intergenic 35.0%
ACCTAGAACTTGTATCAGAT+TGG - chr2.3:42462142-42462161 MS.gene069525:intron 35.0%
AGATAATTTGATCGACAGGA+AGG - chr2.3:42462994-42463013 MS.gene069525:CDS 35.0%
CAAATGCAGATAAGAACAGA+AGG + chr2.3:42462791-42462810 None:intergenic 35.0%
CTATTAATAATCGCTCAGGA+AGG - chr2.3:42463374-42463393 MS.gene069525:intron 35.0%
GGATTACAAAGCTACAAATG+TGG - chr2.3:42462272-42462291 MS.gene069525:intron 35.0%
GTTGCAAACTAGGTATTATG+TGG + chr2.3:42463808-42463827 None:intergenic 35.0%
TCCAATCTGATACAAGTTCT+AGG + chr2.3:42462146-42462165 None:intergenic 35.0%
TCTAATTAATTCGGCCCATT+GGG + chr2.3:42463629-42463648 None:intergenic 35.0%
TCTACCACTAACTCCAAATT+GGG - chr2.3:42461747-42461766 MS.gene069525:CDS 35.0%
TCTGTATATTCTGTGGAAAC+CGG + chr2.3:42461775-42461794 None:intergenic 35.0%
TGCAAACTAGGTATTATGTG+GGG + chr2.3:42463806-42463825 None:intergenic 35.0%
TGTGGTAGAACTTCATTGAT+TGG - chr2.3:42464032-42464051 MS.gene069525:CDS 35.0%
TTCTACCACTAACTCCAAAT+TGG - chr2.3:42461746-42461765 MS.gene069525:CDS 35.0%
TTGGAGTTAGTGGTAGAAAA+AGG + chr2.3:42461744-42461763 None:intergenic 35.0%
TTGTACGTCTGTATATTCTG+TGG + chr2.3:42461782-42461801 None:intergenic 35.0%
! AAGCTACAAATGTGGCTTTT+TGG - chr2.3:42462280-42462299 MS.gene069525:intron 35.0%
! ATAAGCCATCTTTTACGGAA+AGG - chr2.3:42463063-42463082 MS.gene069525:intron 35.0%
! GCGAAAATTTTGTTAGCCAA+TGG - chr2.3:42463443-42463462 MS.gene069525:intron 35.0%
! TATGAGGAGCGTATTAAGAA+AGG - chr2.3:42462032-42462051 MS.gene069525:intron 35.0%
! TCAGTACAGAACAGTTTTTC+AGG - chr2.3:42463698-42463717 MS.gene069525:intron 35.0%
! TGATTGGTTATGTTTCAGGA+CGG - chr2.3:42464048-42464067 MS.gene069525:CDS 35.0%
!! CCCCATCATTTTTAAATCCA+AGG + chr2.3:42461983-42462002 None:intergenic 35.0%
!! TGCAGTATTTCTAGTTCTTC+TGG + chr2.3:42462697-42462716 None:intergenic 35.0%
!!! GCTCTTATTTTCATGTATCC+AGG - chr2.3:42462812-42462831 MS.gene069525:CDS 35.0%
!!! TACAGAACAGTTTTTCAGGT+AGG - chr2.3:42463702-42463721 MS.gene069525:intron 35.0%
AAAAGGTTTACAGTGACTGG+AGG - chr2.3:42462339-42462358 MS.gene069525:intron 40.0%
AAAGGTTTACAGTGACTGGA+GGG - chr2.3:42462340-42462359 MS.gene069525:intron 40.0%
ACTAACTCCAAATTGGGAAC+CGG - chr2.3:42461753-42461772 MS.gene069525:CDS 40.0%
ACTTGAACGGCATAATGAAG+CGG + chr2.3:42463211-42463230 None:intergenic 40.0%
AGATAAGAACAGAAGGCTCT+AGG + chr2.3:42462784-42462803 None:intergenic 40.0%
ATAAGGAGAATTGCGAAGGT+CGG - chr2.3:42461829-42461848 MS.gene069525:intron 40.0%
ATGGACAAGCTTCTTGAAAG+TGG - chr2.3:42462885-42462904 MS.gene069525:intron 40.0%
CATGATATTGAAAACTGGGC+TGG - chr2.3:42462101-42462120 MS.gene069525:intron 40.0%
CTTCATTATGCCGTTCAAGT+TGG - chr2.3:42463211-42463230 MS.gene069525:intron 40.0%
GACGAAGAAGATAAAAGCCT+TGG - chr2.3:42461963-42461982 MS.gene069525:intron 40.0%
GGTTTGCATGCTAGTGAATA+GGG - chr2.3:42463991-42464010 MS.gene069525:CDS 40.0%
GTCTAATTAATTCGGCCCAT+TGG + chr2.3:42463630-42463649 None:intergenic 40.0%
GTTGCAATCAAATCAAGCAG+AGG - chr2.3:42461858-42461877 MS.gene069525:intron 40.0%
GTTTGCATGCTAGTGAATAG+GGG - chr2.3:42463992-42464011 MS.gene069525:CDS 40.0%
TAAGAAACGAGTGGCTAACA+AGG + chr2.3:42462390-42462409 None:intergenic 40.0%
TAATAATCGCTCAGGAAGGT+TGG - chr2.3:42463378-42463397 MS.gene069525:intron 40.0%
TCACTGTCACTACGAATATC+TGG + chr2.3:42461930-42461949 None:intergenic 40.0%
TTGCAAACCCAACAAGAACA+TGG - chr2.3:42461891-42461910 MS.gene069525:intron 40.0%
TTGCACCTTTCCGTAAAAGA+TGG + chr2.3:42463071-42463090 None:intergenic 40.0%
TTGCTTTGCACCAACTTGAA+CGG + chr2.3:42463224-42463243 None:intergenic 40.0%
TTTGAACGGCAACATGCAAT+GGG + chr2.3:42463406-42463425 None:intergenic 40.0%
! GATTGGTTATGTTTCAGGAC+GGG - chr2.3:42464049-42464068 MS.gene069525:CDS 40.0%
! GGCTAACTAAAAGCTTTAGC+AGG - chr2.3:42462301-42462320 MS.gene069525:intron 40.0%
! TGGTTTGCATGCTAGTGAAT+AGG - chr2.3:42463990-42464009 MS.gene069525:CDS 40.0%
!! AAGCTGTTTTGAGCTCGTTT+CGG - chr2.3:42463776-42463795 MS.gene069525:intron 40.0%
!! ATCTCTATTCCGGCTTTGAA+CGG + chr2.3:42463420-42463439 None:intergenic 40.0%
!!! GTTTTTCAGGTAGGTATCAG+TGG - chr2.3:42463711-42463730 MS.gene069525:intron 40.0%
AACTGGATGGACCGTGAAAT+TGG + chr2.3:42462451-42462470 None:intergenic 45.0%
AAGTCCTCATGTCCAGGATA+AGG - chr2.3:42463089-42463108 MS.gene069525:intron 45.0%
AGGTCTCACTGCACTTCATA+AGG - chr2.3:42463014-42463033 MS.gene069525:intron 45.0%
CCAACAAGAACATGGAACCT+GGG - chr2.3:42461899-42461918 MS.gene069525:intron 45.0%
CCAGGTTCCATGTTCTTGTT+GGG + chr2.3:42461901-42461920 None:intergenic 45.0%
CTTTGAACGGCAACATGCAA+TGG + chr2.3:42463407-42463426 None:intergenic 45.0%
GCACTTCATAAGGCGGTTAT+AGG - chr2.3:42463024-42463043 MS.gene069525:intron 45.0%
TATCGATCTATCTGCGCCAT+TGG + chr2.3:42463462-42463481 None:intergenic 45.0%
TCTCACTGCACTTCATAAGG+CGG - chr2.3:42463017-42463036 MS.gene069525:intron 45.0%
TTGAACGGCAACATGCAATG+GGG + chr2.3:42463405-42463424 None:intergenic 45.0%
! ATAAGCCAAGAGAGTGCAGT+GGG + chr2.3:42462848-42462867 None:intergenic 45.0%
! GACTGGTTCAAAGGCATGTA+GGG + chr2.3:42463954-42463973 None:intergenic 45.0%
! GGTTCCCAATTTGGAGTTAG+TGG + chr2.3:42461754-42461773 None:intergenic 45.0%
! TGACTGGTTCAAAGGCATGT+AGG + chr2.3:42463955-42463974 None:intergenic 45.0%
!! ACGAATATCTGGTTCTTCCC+AGG + chr2.3:42461919-42461938 None:intergenic 45.0%
CACACCTTATCCTGGACATG+AGG + chr2.3:42463096-42463115 None:intergenic 50.0%
CCCAACAAGAACATGGAACC+TGG - chr2.3:42461898-42461917 MS.gene069525:intron 50.0%
CCCAGGTTCCATGTTCTTGT+TGG + chr2.3:42461902-42461921 None:intergenic 50.0%
CTCATGTCCAGGATAAGGTG+TGG - chr2.3:42463094-42463113 MS.gene069525:intron 50.0%
TGCATGTTGCCGTTCAAAGC+CGG - chr2.3:42463408-42463427 MS.gene069525:intron 50.0%
! GATAAGCCAAGAGAGTGCAG+TGG + chr2.3:42462849-42462868 None:intergenic 50.0%
! GTGGAAACCGGTTCCCAATT+TGG + chr2.3:42461763-42461782 None:intergenic 50.0%
! TGGGCTGGACATTTCTGTGT+TGG - chr2.3:42462116-42462135 MS.gene069525:intron 50.0%
ACAGGAAGAGACAGAGACGC+AGG - chr2.3:42462004-42462023 MS.gene069525:intron 55.0%
AGAGACGCAGGACGAGTATG+AGG - chr2.3:42462016-42462035 MS.gene069525:intron 55.0%
AGGTGCAAGTCCTCATGTCC+AGG - chr2.3:42463083-42463102 MS.gene069525:intron 55.0%
TCAGGACGGGAAAACAGCAC+TGG - chr2.3:42464062-42464081 MS.gene069525:CDS 55.0%
TTAATTCGGCCCATTGGGCC+TGG + chr2.3:42463624-42463643 None:intergenic 55.0%
!! GCAGTGGGCTCCATTTTTCC+TGG + chr2.3:42462833-42462852 None:intergenic 55.0%
AGATGAGGGCCAGGCCCAAT+GGG - chr2.3:42463612-42463631 MS.gene069525:intron 60.0%
TAGATGAGGGCCAGGCCCAA+TGG - chr2.3:42463611-42463630 MS.gene069525:intron 60.0%
TGGAGCCCACTGCACTCTCT+TGG - chr2.3:42462840-42462859 MS.gene069525:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 42461696 42464161 42461696 ID=MS.gene069525
chr2.3 mRNA 42461696 42464161 42461696 ID=MS.gene069525.t1;Parent=MS.gene069525
chr2.3 exon 42463804 42464161 42463804 ID=MS.gene069525.t1.exon1;Parent=MS.gene069525.t1
chr2.3 CDS 42463804 42464161 42463804 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
chr2.3 exon 42463104 42463183 42463104 ID=MS.gene069525.t1.exon2;Parent=MS.gene069525.t1
chr2.3 CDS 42463104 42463183 42463104 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
chr2.3 exon 42462925 42463023 42462925 ID=MS.gene069525.t1.exon3;Parent=MS.gene069525.t1
chr2.3 CDS 42462925 42463023 42462925 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
chr2.3 exon 42462747 42462845 42462747 ID=MS.gene069525.t1.exon4;Parent=MS.gene069525.t1
chr2.3 CDS 42462747 42462845 42462747 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
chr2.3 exon 42462563 42462661 42462563 ID=MS.gene069525.t1.exon5;Parent=MS.gene069525.t1
chr2.3 CDS 42462563 42462661 42462563 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
chr2.3 exon 42462367 42462465 42462367 ID=MS.gene069525.t1.exon6;Parent=MS.gene069525.t1
chr2.3 CDS 42462367 42462465 42462367 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
chr2.3 exon 42461696 42461791 42461696 ID=MS.gene069525.t1.exon7;Parent=MS.gene069525.t1
chr2.3 CDS 42461696 42461791 42461696 ID=cds.MS.gene069525.t1;Parent=MS.gene069525.t1
Gene Sequence

>MS.gene069525

ATGGATTGTTTGGCTACATCACCTGTTCTTTCTAATAAATTTATTCCTTTTTCTACCACTAACTCCAAATTGGGAACCGGTTTCCACAGAATATACAGACGTACAACCAAACAAAAATTACGTCTCTCTTTTTATAAGGAGAATTGCGAAGGTCGGAGTAATGTTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGCAAACCCAACAAGAACATGGAACCTGGGAAGAACCAGATATTCGTAGTGACAGTGACGATGAGTATGCTGACGAAGAAGATAAAAGCCTTGGATTTAAAAATGATGGGGAACAGGAAGAGACAGAGACGCAGGACGAGTATGAGGAGCGTATTAAGAAAGGTACTTTTGTTTTTCATGTTACTTTTTCTCTATTGGAGTCCGTATGTCATGATATTGAAAACTGGGCTGGACATTTCTGTGTTGGTTAACCTAGAACTTGTATCAGATTGGAAAAAAATAATAATCATACATGAGTATGGGATAGCTATAATCATGATCATTGATCAGTTTACTAAAATATGTTTCAGTCTAAATTTTAATAATTGGTCTGATGTTTGGGATTACAAAGCTACAAATGTGGCTTTTTGGCTAACTAAAAGCTTTAGCAGGTCCTATACTTAGATTAAAAGGTTTACAGTGACTGGAGGGAGTAACTTCTATATATTTTTCTAACCTTGTTAGCCACTCGTTTCTTATATTGATAGTAATAAGATATGACAAAAAAGAAGGTTTACCAATTTCACGGTCCATCCAGTTTTCAAAATATTGCTTTGCACATTTCTTCTTTGTTGGTGTTTGTACTTTATACTTTCAAATGGTTTTAAGCTTTGATAAGGAACTAATTGTTGAATATCTCCAATGAGTAAATAAAAAAATATATTGAATGATGGTTGAGAAATAGATTTTAGAATGTCTTCTAATATTGTACAACCTATAAATTGATACTTTTGTTAATGCAGAGGTTGATCGACTTTTAAAACCAGAAGAACTAGAAATACTGCAACAGAATATAACTCCTAATTTGGAAAAAATATCATCTGTAAGTCTGTAACTCAGCATTGTCTCTCCTAGAGCCTTCTGTTCTTATCTGCATTTGAGCTCTTATTTTCATGTATCCAGGAAAAATGGAGCCCACTGCACTCTCTTGGCTTATCATTTCAGATTTATAGTATGGACAAGCTTCTTGAAAGTGGTCATGATATCGATTTCGTCAATAAGGTGCGTTTGTTTGCGTTATATGTATGTCAATTTTTACATAATATTTGCCTAGTCGTAAATAAGATAATTTGATCGACAGGAAGGTCTCACTGCACTTCATAAGGCGGTTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCCAGGATAAGGTGTGGATAAATTCCTTATGTTCATATGTTGTTCACTGCGTTCTGCAAGTGTGATTATGTGTTTATATATTTATTGATATGGCAGGATGGAGCTACTCCGCTTCATTATGCCGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGATGTCAATGTGGCAGATAATGTGAGCATTTTTATAAACACAAGCATTTTCTAACTGTAAATAAGTTCTTCAGTTTTACTTGCTGTATATGGGTTATTTACTATTAATAATCGCTCAGGAAGGTTGGACCCCATTGCATGTTGCCGTTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTAGCCAATGGCGCAGATAGATCGATAGAAAATAAGGTATTTATTTGTACATTCCACTACAGAGCTCAATAATTAATATGCAACATGGTGAACATGTATTAATTTATGATCATTTTATTTATTCTCGTGTTAGACTTCTTATTAGAAAAAAAATATTAGATGAGGGCCAGGCCCAATGGGCCGAATTAATTAGACAATCAAAATTGAATTAATAGTTCAGTTAATCAGTTGGATAAATAGTAGTCAGTACAGAACAGTTTTTCAGGTAGGTATCAGTGGTTATTGTTCAAGAGTTATGACTAGAGCTTATGATATGTTCATAAGCTGTTTTGAGCTCGTTTCGGTAAGCCCCACATAATACCTAGTTTGCAACTAATATGAAAACAGTTTAATCACATTTGCTTTTGATGATATAAAGAGCTTATACTTATACATACACTTTTATAGGATAAACACTTAATTAGAGAGTGCTTAATTAAGATGTTTTTCAAACATACCCTACATGCCTTTGAACCAGTCAGTTATAAACTCAAATTGGTTTGCATGCTAGTGAATAGGGGAGTTATTCTTTTTTGCTTGTGGTAGAACTTCATTGATTGGTTATGTTTCAGGACGGGAAAACAGCACTGGATGTAAGTATATGTTATGGAAAAGACTTCATGTCTTATGACCTTGCTAGATTAATTAAGATAGGTCCAGGCAACTGA

Protein sequence

>MS.gene069525.t1

MDCLATSPVLSNKFIPFSTTNSKLGTGFHRIYRRTTKQKLRLSFYKENCEGRSNVAIKSSRGVSSLQTQQEHGTWEEPDIRSDSDDEYADEEDKSLGFKNDGEQEETETQDEYEERIKKEVDRLLKPEELEILQQNITPNLEKISSEKWSPLHSLGLSFQIYSMDKLLESGHDIDFVNKEGLTALHKAVIGKKEAVISHLLRKGASPHVQDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSIENKDGKTALDVSICYGKDFMSYDLARLIKIGPGN