Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09297.t1 | XP_003629679.1 | 98.3 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 4.20E-150 | 541.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09297.t1 | Q9BZV1 | 45.9 | 61 | 33 | 0 | 311 | 371 | 166 | 226 | 1.4e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09297.t1 | G7LHW1 | 98.3 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 3.0e-150 | 541.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene09297 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene049166 | MS.gene09297 | 0.827126 | 1.86E-54 | -1.69E-46 |
| MS.gene04918 | MS.gene09297 | 0.828591 | 8.26E-55 | -1.69E-46 |
| MS.gene04919 | MS.gene09297 | 0.80149 | 8.78E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene09297 | 0.824278 | 8.80E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene09297 | 0.842191 | 3.01E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene09297 | 0.828499 | 8.69E-55 | -1.69E-46 |
| MS.gene049411 | MS.gene09297 | 0.82764 | 1.40E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene09297 | 0.816171 | 6.35E-52 | -1.69E-46 |
| MS.gene049674 | MS.gene09297 | 0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene09297 | 0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene09297 | 0.871908 | 4.77E-67 | -1.69E-46 |
| MS.gene050085 | MS.gene09297 | 0.897051 | 2.05E-76 | -1.69E-46 |
| MS.gene050114 | MS.gene09297 | 0.808502 | 3.00E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene09297 | 0.801641 | 8.18E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene09297 | 0.834763 | 2.48E-56 | -1.69E-46 |
| MS.gene050384 | MS.gene09297 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene050386 | MS.gene09297 | 0.81575 | 7.88E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene09297 | 0.809139 | 2.19E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene09297 | 0.82066 | 6.10E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene09297 | 0.846497 | 2.09E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene09297 | 0.848513 | 5.84E-60 | -1.69E-46 |
| MS.gene050689 | MS.gene09297 | 0.825821 | 3.80E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene09297 | 0.855474 | 6.16E-62 | -1.69E-46 |
| MS.gene050838 | MS.gene09297 | 0.878039 | 3.88E-69 | -1.69E-46 |
| MS.gene050945 | MS.gene09297 | 0.848174 | 7.25E-60 | -1.69E-46 |
| MS.gene050955 | MS.gene09297 | 0.823721 | 1.19E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene09297 | 0.898426 | 5.37E-77 | -1.69E-46 |
| MS.gene051043 | MS.gene09297 | 0.819619 | 1.06E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene09297 | 0.821245 | 4.47E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene09297 | 0.887177 | 1.79E-72 | -1.69E-46 |
| MS.gene051343 | MS.gene09297 | 0.884824 | 1.38E-71 | -1.69E-46 |
| MS.gene05134 | MS.gene09297 | 0.808061 | 3.73E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene09297 | 0.835284 | 1.83E-56 | -1.69E-46 |
| MS.gene051642 | MS.gene09297 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene09297 | 0.825205 | 5.32E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene09297 | 0.808791 | 2.60E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene09297 | 0.815776 | 7.77E-52 | -1.69E-46 |
| MS.gene051856 | MS.gene09297 | 0.801749 | 7.77E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene09297 | 0.850739 | 1.40E-60 | -1.69E-46 |
| MS.gene051902 | MS.gene09297 | 0.823977 | 1.04E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene09297 | 0.813824 | 2.10E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene09297 | 0.861159 | 1.25E-63 | -1.69E-46 |
| MS.gene052072 | MS.gene09297 | 0.854688 | 1.04E-61 | -1.69E-46 |
| MS.gene052242 | MS.gene09297 | -0.837727 | 4.38E-57 | -1.69E-46 |
| MS.gene052296 | MS.gene09297 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene09297 | 0.835931 | 1.26E-56 | -1.69E-46 |
| MS.gene052335 | MS.gene09297 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene09297 | 0.843764 | 1.15E-58 | -1.69E-46 |
| MS.gene052434 | MS.gene09297 | 0.842723 | 2.17E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene09297 | 0.82339 | 1.42E-53 | -1.69E-46 |
| MS.gene052932 | MS.gene09297 | 0.804538 | 2.06E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene09297 | 0.837626 | 4.65E-57 | -1.69E-46 |
| MS.gene053058 | MS.gene09297 | 0.874733 | 5.36E-68 | -1.69E-46 |
| MS.gene053109 | MS.gene09297 | 0.806153 | 9.45E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene09297 | 0.834107 | 3.63E-56 | -1.69E-46 |
| MS.gene053167 | MS.gene09297 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene09297 | 0.836744 | 7.82E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene09297 | 0.807032 | 6.16E-50 | -1.69E-46 |
| MS.gene053786 | MS.gene09297 | 0.80805 | 3.75E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene09297 | 0.819774 | 9.74E-53 | -1.69E-46 |
| MS.gene053952 | MS.gene09297 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene09297 | 0.845506 | 3.89E-59 | -1.69E-46 |
| MS.gene054403 | MS.gene09297 | 0.858009 | 1.11E-62 | -1.69E-46 |
| MS.gene054413 | MS.gene09297 | 0.816763 | 4.68E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene09297 | 0.817898 | 2.60E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene09297 | 0.806612 | 7.56E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene09297 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene055314 | MS.gene09297 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene09297 | 0.842569 | 2.39E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene09297 | 0.84175 | 3.93E-58 | -1.69E-46 |
| MS.gene055979 | MS.gene09297 | 0.805392 | 1.36E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene09297 | 0.804932 | 1.70E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene09297 | 0.845448 | 4.04E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene09297 | 0.868758 | 5.15E-66 | -1.69E-46 |
| MS.gene056403 | MS.gene09297 | 0.804722 | 1.88E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene09297 | 0.816676 | 4.89E-52 | -1.69E-46 |
| MS.gene056605 | MS.gene09297 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene09297 | 0.812939 | 3.29E-51 | -1.69E-46 |
| MS.gene056752 | MS.gene09297 | 0.803567 | 3.28E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene09297 | 0.834729 | 2.53E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene09297 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene09297 | 0.842375 | 2.69E-58 | -1.69E-46 |
| MS.gene057094 | MS.gene09297 | 0.831787 | 1.37E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene09297 | 0.840626 | 7.76E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene09297 | 0.806346 | 8.60E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene09297 | 0.81312 | 3.01E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene09297 | 0.801267 | 9.76E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene09297 | 0.85699 | 2.21E-62 | -1.69E-46 |
| MS.gene057890 | MS.gene09297 | -0.84433 | 8.08E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene09297 | 0.835873 | 1.30E-56 | -1.69E-46 |
| MS.gene058054 | MS.gene09297 | 0.853025 | 3.14E-61 | -1.69E-46 |
| MS.gene058055 | MS.gene09297 | 0.815779 | 7.76E-52 | -1.69E-46 |
| MS.gene058074 | MS.gene09297 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene09297 | 0.817422 | 3.33E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene09297 | 0.809764 | 1.61E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene09297 | 0.849053 | 4.14E-60 | -1.69E-46 |
| MS.gene058292 | MS.gene09297 | 0.835623 | 1.51E-56 | -1.69E-46 |
| MS.gene058330 | MS.gene09297 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene09297 | 0.804827 | 1.79E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene09297 | 0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene09297 | 0.811367 | 7.25E-51 | -1.69E-46 |
| MS.gene058646 | MS.gene09297 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene09297 | 0.80255 | 5.32E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene09297 | 0.838815 | 2.30E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene09297 | 0.911397 | 6.37E-83 | -1.69E-46 |
| MS.gene059170 | MS.gene09297 | 0.821003 | 5.09E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene09297 | 0.823559 | 1.30E-53 | -1.69E-46 |
| MS.gene059227 | MS.gene09297 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene09297 | 0.812938 | 3.29E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene09297 | 0.8069 | 6.57E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene09297 | -0.808802 | 2.59E-50 | -1.69E-46 |
| MS.gene059901 | MS.gene09297 | -0.830184 | 3.39E-55 | -1.69E-46 |
| MS.gene06010 | MS.gene09297 | 0.84824 | 6.95E-60 | -1.69E-46 |
| MS.gene06011 | MS.gene09297 | 0.856004 | 4.31E-62 | -1.69E-46 |
| MS.gene060296 | MS.gene09297 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene09297 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene09297 | 0.855796 | 4.96E-62 | -1.69E-46 |
| MS.gene060933 | MS.gene09297 | 0.821278 | 4.40E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene09297 | 0.824395 | 8.26E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene09297 | 0.836375 | 9.71E-57 | -1.69E-46 |
| MS.gene061006 | MS.gene09297 | 0.836251 | 1.04E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene09297 | 0.874421 | 6.84E-68 | -1.69E-46 |
| MS.gene061160 | MS.gene09297 | 0.808161 | 3.55E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09297.t1 | MTR_8g085380 | 98.284 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 0.0 | 805 |
| MS.gene09297.t1 | MTR_8g013030 | 58.170 | 306 | 125 | 2 | 104 | 408 | 1 | 304 | 6.22e-118 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09297.t1 | AT1G04850 | 76.755 | 413 | 91 | 3 | 1 | 408 | 1 | 413 | 0.0 | 561 |
| MS.gene09297.t1 | AT1G04850 | 75.633 | 316 | 74 | 2 | 96 | 408 | 9 | 324 | 2.35e-140 | 403 |
| MS.gene09297.t1 | AT5G48690 | 52.997 | 317 | 141 | 6 | 98 | 408 | 2 | 316 | 8.53e-87 | 267 |
| MS.gene09297.t1 | AT5G48690 | 53.171 | 205 | 90 | 4 | 209 | 408 | 63 | 266 | 1.39e-59 | 195 |
| MS.gene09297.t1 | AT5G48690 | 53.670 | 218 | 94 | 5 | 98 | 310 | 2 | 217 | 7.07e-48 | 163 |
Find 96 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATGGCATTTGTTTCTTC+TGG | 0.107206 | 4.1:+14210609 | None:intergenic |
| TTAGGAGCCTCTAAACTTAT+TGG | 0.215263 | 4.1:+14212394 | None:intergenic |
| GTTCAGATCCAGCTGAATTT+AGG | 0.250912 | 4.1:+14205265 | None:intergenic |
| TTCAGTGGATTCAGAGAAAT+TGG | 0.259726 | 4.1:+14212661 | None:intergenic |
| CTCCCTCATCTGCTCGGTTT+TGG | 0.272816 | 4.1:+14207890 | None:intergenic |
| CTACATAAGTTAGAAGAGTT+TGG | 0.276140 | 4.1:+14206061 | None:intergenic |
| TGGGATTCTGAATTCCCTTT+AGG | 0.291163 | 4.1:+14212376 | None:intergenic |
| TTTCAACAGCCCGTGCAATA+AGG | 0.291576 | 4.1:-14211557 | MS.gene09297:CDS |
| TGCAGAGTTTCCTGCCAATT+AGG | 0.314647 | 4.1:-14207920 | MS.gene09297:intron |
| GAATGGCATTTGTTTCTTCT+GGG | 0.341561 | 4.1:+14210610 | None:intergenic |
| CTCTACAACAGCTGCAGGCT+TGG | 0.356379 | 4.1:+14208024 | None:intergenic |
| CATTTGTTTCTTCTGGGGTA+AGG | 0.356425 | 4.1:+14210616 | None:intergenic |
| AGCAAAGCCAATAAGTTTAG+AGG | 0.359150 | 4.1:-14212401 | MS.gene09297:CDS |
| AGCTGTTGTAGAGGAGAAAA+AGG | 0.364152 | 4.1:-14208014 | MS.gene09297:intron |
| ATCACTAGTTCCACCCTCTT+GGG | 0.372205 | 4.1:+14212357 | None:intergenic |
| CAAACTCTTCTAACTTATGT+AGG | 0.372345 | 4.1:-14206060 | MS.gene09297:CDS |
| ACTTATTGGCTTTGCTGCTT+CGG | 0.374866 | 4.1:+14212408 | None:intergenic |
| GATCACTAGTTCCACCCTCT+TGG | 0.376605 | 4.1:+14212356 | None:intergenic |
| TTGAATTCCTTGAAATTTGC+GGG | 0.388129 | 4.1:-14205350 | MS.gene09297:CDS |
| TCTCAAACCCGCAAATTTCA+AGG | 0.390275 | 4.1:+14205343 | None:intergenic |
| TTCAGTGTGTCCAGTTCTCT+TGG | 0.403511 | 4.1:+14212447 | None:intergenic |
| TTCAACAGCCCGTGCAATAA+GGG | 0.403545 | 4.1:-14211556 | MS.gene09297:CDS |
| TTGGCTGTTGAAGGCTCCTC+TGG | 0.404673 | 4.1:+14208043 | None:intergenic |
| ATTTGTTTCTTCTGGGGTAA+GGG | 0.408133 | 4.1:+14210617 | None:intergenic |
| ATACCTTAGTTCCTTTAGAA+TGG | 0.408926 | 4.1:+14210593 | None:intergenic |
| GCCTCGAGGCTGCTGTAACT+TGG | 0.413530 | 4.1:-14210909 | MS.gene09297:CDS |
| TTTGCAGGTTGTTAGCTTTG+AGG | 0.421356 | 4.1:-14208320 | MS.gene09297:intron |
| TTCTCCTCTACAACAGCTGC+AGG | 0.432013 | 4.1:+14208019 | None:intergenic |
| GCTTGAGGAACTTGAATCAA+TGG | 0.436658 | 4.1:-14211583 | MS.gene09297:CDS |
| GATTTACACACCAAGAGAAC+TGG | 0.446924 | 4.1:-14212457 | MS.gene09297:CDS |
| CTTGAGGAACTTGAATCAAT+GGG | 0.458924 | 4.1:-14211582 | MS.gene09297:CDS |
| GCTGCAGGCTTGGCTGTTGA+AGG | 0.461571 | 4.1:+14208034 | None:intergenic |
| AGAAGAAGAAGAGAAGAGAA+TGG | 0.464524 | 4.1:-14209958 | MS.gene09297:CDS |
| ATTGAATTCCTTGAAATTTG+CGG | 0.466357 | 4.1:-14205351 | MS.gene09297:CDS |
| TGGTGGCAGGCCTAATTGGC+AGG | 0.466592 | 4.1:+14207910 | None:intergenic |
| TTGCGGTACTCTCTTGAAAT+CGG | 0.467068 | 4.1:-14212723 | MS.gene09297:CDS |
| GTTTCTTCTGGGGTAAGGGA+GGG | 0.467929 | 4.1:+14210621 | None:intergenic |
| AGAGAGAATCAAGCAAAAGT+TGG | 0.474657 | 4.1:-14208265 | MS.gene09297:CDS |
| TAAGTTTAGAGGCTCCTAAA+GGG | 0.480337 | 4.1:-14212390 | MS.gene09297:CDS |
| TGTTTCTTCTGGGGTAAGGG+AGG | 0.481794 | 4.1:+14210620 | None:intergenic |
| AAGAAGACAACGAGAGAAAA+CGG | 0.494209 | 4.1:-14208417 | MS.gene09297:intron |
| AAACTCTTCTAACTTATGTA+GGG | 0.500453 | 4.1:-14206059 | MS.gene09297:CDS |
| ATGCCATTCTAAAGGAACTA+AGG | 0.501820 | 4.1:-14210596 | MS.gene09297:intron |
| ACGAATCACCGGAATATGGC+AGG | 0.506192 | 4.1:-14212767 | None:intergenic |
| GCGGAAAGAAGACGAAAACT+TGG | 0.508359 | 4.1:-14208073 | MS.gene09297:CDS |
| TTTGAGGAAAGCAGAGAAAG+AGG | 0.508582 | 4.1:-14208304 | MS.gene09297:CDS |
| AATGGAGAGAGAAAGAGAAA+AGG | 0.510480 | 4.1:-14209940 | MS.gene09297:intron |
| GGAGAGAATTCGAGTCGGTA+AGG | 0.511409 | 4.1:-14208464 | MS.gene09297:CDS |
| AGAAACAAATGCCATTCTAA+AGG | 0.511452 | 4.1:-14210604 | MS.gene09297:CDS |
| ATAAGTTTAGAGGCTCCTAA+AGG | 0.517070 | 4.1:-14212391 | MS.gene09297:CDS |
| AGCTATAATCTTAAGGGAGA+AGG | 0.520095 | 4.1:-14209994 | MS.gene09297:intron |
| GAAAGAGTTGGTGCTTTGAA+AGG | 0.523288 | 4.1:-14205378 | MS.gene09297:CDS |
| AAGGGCATTTCATCTATGTC+AGG | 0.523907 | 4.1:+14210865 | None:intergenic |
| CAAGCCTGCAGCTGTTGTAG+AGG | 0.527882 | 4.1:-14208023 | MS.gene09297:CDS |
| ATTGCAGTCCTAAATTCAGC+TGG | 0.528514 | 4.1:-14205273 | MS.gene09297:CDS |
| TTGGAATGCTCTCTTCACTC+TGG | 0.530560 | 4.1:+14206080 | None:intergenic |
| CCACCAAAACCGAGCAGATG+AGG | 0.536858 | 4.1:-14207893 | MS.gene09297:CDS |
| AAGAAGACGAAAACTTGGAT+TGG | 0.539216 | 4.1:-14208068 | MS.gene09297:CDS |
| GAGCAGACGAGGTTGAGAAC+GGG | 0.547682 | 4.1:+14212638 | None:intergenic |
| AATGGCATTTGTTTCTTCTG+GGG | 0.548701 | 4.1:+14210611 | None:intergenic |
| AATGAAGTGCCCTTATTGCA+CGG | 0.554419 | 4.1:+14211547 | None:intergenic |
| ATGAAGTGCCCTTATTGCAC+GGG | 0.556855 | 4.1:+14211548 | None:intergenic |
| TGCGGGTTTGAGAAGATCGA+TGG | 0.557070 | 4.1:-14205333 | MS.gene09297:CDS |
| TCGCTCCAGTGCGGTGATTG+CGG | 0.565094 | 4.1:-14212740 | MS.gene09297:CDS |
| GCAATATCAACCTTCTCCCT+AGG | 0.569294 | 4.1:+14205291 | None:intergenic |
| GAAAAGCTGCGTTACTAAGA+CGG | 0.574213 | 4.1:+14205995 | None:intergenic |
| CAGAGAAAGAGGAAGAGCGA+AGG | 0.574752 | 4.1:-14208293 | MS.gene09297:CDS |
| TGACATAGATGAAATGCCCT+TGG | 0.574903 | 4.1:-14210863 | MS.gene09297:intron |
| CAAGCACTCCCTCATCTGCT+CGG | 0.577094 | 4.1:+14207884 | None:intergenic |
| CTATGTCAGGCGTATTCTCG+TGG | 0.577322 | 4.1:+14210878 | None:intergenic |
| GAGGTTGAGAACGGGTTCAG+TGG | 0.580165 | 4.1:+14212646 | None:intergenic |
| GGAACTAGTGATCAGAATGA+AGG | 0.581651 | 4.1:-14212346 | MS.gene09297:intron |
| CACCAAAACCGAGCAGATGA+GGG | 0.583334 | 4.1:-14207892 | MS.gene09297:CDS |
| AGAGTTGGTGCTTTGAAAGG+AGG | 0.583659 | 4.1:-14205375 | MS.gene09297:CDS |
| GGAGCAGACGAGGTTGAGAA+CGG | 0.583672 | 4.1:+14212637 | None:intergenic |
| GAGTACCGCAATCACCGCAC+TGG | 0.585883 | 4.1:+14212735 | None:intergenic |
| AGAGAAAGAGGAAGAGCGAA+GGG | 0.587718 | 4.1:-14208292 | MS.gene09297:CDS |
| AGGAGTTGCTTGAAGCAAAG+AGG | 0.588418 | 4.1:-14208444 | MS.gene09297:CDS |
| TCGGCAAGGTTTGGAGCAAG+TGG | 0.589086 | 4.1:+14212616 | None:intergenic |
| GCAAAAGTTGGAAGAAGACA+AGG | 0.592876 | 4.1:-14208253 | MS.gene09297:intron |
| TGGAGCAAGTGGAGCAGACG+AGG | 0.599392 | 4.1:+14212627 | None:intergenic |
| GAATCACCGGAATATGGCAG+GGG | 0.604375 | 4.1:-14212765 | None:intergenic |
| CGAATCACCGGAATATGGCA+GGG | 0.607477 | 4.1:-14212766 | None:intergenic |
| AAAACTTGGATTGGCTCCAG+AGG | 0.621215 | 4.1:-14208059 | MS.gene09297:CDS |
| TTCAGAGAAATTGGAGTGTG+AGG | 0.636378 | 4.1:+14212670 | None:intergenic |
| TGTGTTTAACAGGAAAGAGT+TGG | 0.642404 | 4.1:-14205390 | MS.gene09297:intron |
| AATTCAGAATCCCAAGAGGG+TGG | 0.646932 | 4.1:-14212367 | MS.gene09297:CDS |
| GGGAATTCAGAATCCCAAGA+GGG | 0.649229 | 4.1:-14212370 | MS.gene09297:CDS |
| AGAAGCTTTAGCTTTACTGA+CGG | 0.652551 | 4.1:+14210647 | None:intergenic |
| TTCTCTCAAGCAGAACCACA+AGG | 0.666147 | 4.1:-14207859 | MS.gene09297:intron |
| TATAGGTAACACTAGCCTCG+AGG | 0.680236 | 4.1:-14210923 | MS.gene09297:intron |
| TCCAAGTTACAGCAGCCTCG+AGG | 0.700049 | 4.1:+14210908 | None:intergenic |
| GCAGGGGTTTCGCTCCAGTG+CGG | 0.706219 | 4.1:-14212749 | MS.gene09297:CDS |
| ATTCAGGAGAGAATTCGAGT+CGG | 0.712094 | 4.1:-14208469 | MS.gene09297:intron |
| AGGGAATTCAGAATCCCAAG+AGG | 0.725266 | 4.1:-14212371 | MS.gene09297:CDS |
| GGGTTTGAGAAGATCGATGG+CGG | 0.728380 | 4.1:-14205330 | MS.gene09297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14205224 | 14212774 | 14205224 | ID=MS.gene09297 |
| chr4.1 | mRNA | 14205224 | 14212774 | 14205224 | ID=MS.gene09297.t1;Parent=MS.gene09297 |
| chr4.1 | exon | 14212607 | 14212774 | 14212607 | ID=MS.gene09297.t1.exon1;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14212607 | 14212774 | 14212607 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14212347 | 14212485 | 14212347 | ID=MS.gene09297.t1.exon2;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14212347 | 14212485 | 14212347 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14211541 | 14211636 | 14211541 | ID=MS.gene09297.t1.exon3;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14211541 | 14211636 | 14211541 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14210864 | 14210940 | 14210864 | ID=MS.gene09297.t1.exon4;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14210864 | 14210940 | 14210864 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14210597 | 14210676 | 14210597 | ID=MS.gene09297.t1.exon5;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14210597 | 14210676 | 14210597 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14209941 | 14210001 | 14209941 | ID=MS.gene09297.t1.exon6;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14209941 | 14210001 | 14209941 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14208418 | 14208485 | 14208418 | ID=MS.gene09297.t1.exon7;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14208418 | 14208485 | 14208418 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14208254 | 14208335 | 14208254 | ID=MS.gene09297.t1.exon8;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14208254 | 14208335 | 14208254 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14208015 | 14208095 | 14208015 | ID=MS.gene09297.t1.exon9;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14208015 | 14208095 | 14208015 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14207860 | 14207937 | 14207860 | ID=MS.gene09297.t1.exon10;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14207860 | 14207937 | 14207860 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14205993 | 14206112 | 14205993 | ID=MS.gene09297.t1.exon11;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14205993 | 14206112 | 14205993 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| chr4.1 | exon | 14205224 | 14205400 | 14205224 | ID=MS.gene09297.t1.exon12;Parent=MS.gene09297.t1 |
| chr4.1 | CDS | 14205224 | 14205400 | 14205224 | ID=cds.MS.gene09297.t1;Parent=MS.gene09297.t1 |
| Gene Sequence |
| Protein sequence |
