Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21677.t1 | XP_003610971.1 | 98.7 | 755 | 8 | 2 | 7 | 760 | 1 | 754 | 0.00E+00 | 1229.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21677.t1 | O22437 | 93.2 | 762 | 36 | 6 | 7 | 760 | 1 | 754 | 0.0e+00 | 1151.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21677.t1 | G7K9A4 | 98.7 | 755 | 8 | 2 | 7 | 760 | 1 | 754 | 0.0e+00 | 1229.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049173 | MS.gene21677 | 0.82222 | 2.66E-53 | -1.69E-46 |
MS.gene049217 | MS.gene21677 | 0.823413 | 1.40E-53 | -1.69E-46 |
MS.gene049222 | MS.gene21677 | 0.811443 | 6.98E-51 | -1.69E-46 |
MS.gene049285 | MS.gene21677 | 0.827835 | 1.26E-54 | -1.69E-46 |
MS.gene049427 | MS.gene21677 | 0.86169 | 8.59E-64 | -1.69E-46 |
MS.gene049491 | MS.gene21677 | 0.822691 | 2.07E-53 | -1.69E-46 |
MS.gene049609 | MS.gene21677 | 0.80123 | 9.93E-49 | -1.69E-46 |
MS.gene049614 | MS.gene21677 | 0.825251 | 5.19E-54 | -1.69E-46 |
MS.gene049805 | MS.gene21677 | 0.817212 | 3.71E-52 | -1.69E-46 |
MS.gene049828 | MS.gene21677 | 0.81572 | 8.00E-52 | -1.69E-46 |
MS.gene049907 | MS.gene21677 | 0.839307 | 1.71E-57 | -1.69E-46 |
MS.gene050076 | MS.gene21677 | 0.82823 | 1.01E-54 | -1.69E-46 |
MS.gene050163 | MS.gene21677 | 0.836956 | 6.91E-57 | -1.69E-46 |
MS.gene050165 | MS.gene21677 | 0.807017 | 6.21E-50 | -1.69E-46 |
MS.gene050301 | MS.gene21677 | 0.800836 | 1.20E-48 | -1.69E-46 |
MS.gene050333 | MS.gene21677 | 0.814529 | 1.47E-51 | -1.69E-46 |
MS.gene050432 | MS.gene21677 | 0.819014 | 1.45E-52 | -1.69E-46 |
MS.gene050520 | MS.gene21677 | 0.811274 | 7.60E-51 | -1.69E-46 |
MS.gene050593 | MS.gene21677 | 0.807919 | 3.99E-50 | -1.69E-46 |
MS.gene050747 | MS.gene21677 | 0.810762 | 9.81E-51 | -1.69E-46 |
MS.gene050767 | MS.gene21677 | 0.856004 | 4.31E-62 | -1.69E-46 |
MS.gene050770 | MS.gene21677 | 0.855878 | 4.69E-62 | -1.69E-46 |
MS.gene050772 | MS.gene21677 | 0.822532 | 2.25E-53 | -1.69E-46 |
MS.gene050783 | MS.gene21677 | 0.835195 | 1.93E-56 | -1.69E-46 |
MS.gene050950 | MS.gene21677 | 0.807712 | 4.42E-50 | -1.69E-46 |
MS.gene05100 | MS.gene21677 | 0.826044 | 3.37E-54 | -1.69E-46 |
MS.gene05101 | MS.gene21677 | 0.833943 | 3.99E-56 | -1.69E-46 |
MS.gene05105 | MS.gene21677 | 0.803826 | 2.90E-49 | -1.69E-46 |
MS.gene051255 | MS.gene21677 | 0.802474 | 5.52E-49 | -1.69E-46 |
MS.gene051387 | MS.gene21677 | 0.853582 | 2.17E-61 | -1.69E-46 |
MS.gene051551 | MS.gene21677 | 0.801327 | 9.49E-49 | -1.69E-46 |
MS.gene051692 | MS.gene21677 | 0.829117 | 6.16E-55 | -1.69E-46 |
MS.gene051810 | MS.gene21677 | 0.804324 | 2.28E-49 | -1.69E-46 |
MS.gene052271 | MS.gene21677 | 0.864552 | 1.12E-64 | -1.69E-46 |
MS.gene052310 | MS.gene21677 | 0.806121 | 9.59E-50 | -1.69E-46 |
MS.gene052326 | MS.gene21677 | 0.82701 | 1.98E-54 | -1.69E-46 |
MS.gene052379 | MS.gene21677 | 0.831043 | 2.09E-55 | -1.69E-46 |
MS.gene052421 | MS.gene21677 | 0.817676 | 2.91E-52 | -1.69E-46 |
MS.gene052484 | MS.gene21677 | 0.815861 | 7.44E-52 | -1.69E-46 |
MS.gene052615 | MS.gene21677 | 0.821753 | 3.42E-53 | -1.69E-46 |
MS.gene052670 | MS.gene21677 | 0.802292 | 6.01E-49 | -1.69E-46 |
MS.gene053103 | MS.gene21677 | 0.826851 | 2.16E-54 | -1.69E-46 |
MS.gene053104 | MS.gene21677 | 0.833954 | 3.96E-56 | -1.69E-46 |
MS.gene053207 | MS.gene21677 | 0.821924 | 3.12E-53 | -1.69E-46 |
MS.gene053213 | MS.gene21677 | 0.846771 | 1.76E-59 | -1.69E-46 |
MS.gene053286 | MS.gene21677 | 0.843186 | 1.64E-58 | -1.69E-46 |
MS.gene053322 | MS.gene21677 | 0.870372 | 1.53E-66 | -1.69E-46 |
MS.gene053574 | MS.gene21677 | 0.808361 | 3.22E-50 | -1.69E-46 |
MS.gene053632 | MS.gene21677 | 0.813037 | 3.13E-51 | -1.69E-46 |
MS.gene053813 | MS.gene21677 | 0.831748 | 1.40E-55 | -1.69E-46 |
MS.gene054123 | MS.gene21677 | 0.802229 | 6.20E-49 | -1.69E-46 |
MS.gene054376 | MS.gene21677 | 0.852981 | 3.23E-61 | -1.69E-46 |
MS.gene05455 | MS.gene21677 | 0.800457 | 1.43E-48 | -1.69E-46 |
MS.gene054595 | MS.gene21677 | 0.80257 | 5.27E-49 | -1.69E-46 |
MS.gene054600 | MS.gene21677 | 0.8279 | 1.21E-54 | -1.69E-46 |
MS.gene054642 | MS.gene21677 | 0.826394 | 2.78E-54 | -1.69E-46 |
MS.gene054802 | MS.gene21677 | 0.826575 | 2.52E-54 | -1.69E-46 |
MS.gene054803 | MS.gene21677 | 0.82983 | 4.13E-55 | -1.69E-46 |
MS.gene054804 | MS.gene21677 | 0.828861 | 7.10E-55 | -1.69E-46 |
MS.gene05505 | MS.gene21677 | 0.812362 | 4.40E-51 | -1.69E-46 |
MS.gene055212 | MS.gene21677 | 0.810235 | 1.27E-50 | -1.69E-46 |
MS.gene055362 | MS.gene21677 | 0.801525 | 8.64E-49 | -1.69E-46 |
MS.gene055397 | MS.gene21677 | 0.830512 | 2.82E-55 | -1.69E-46 |
MS.gene055412 | MS.gene21677 | 0.851414 | 9.01E-61 | -1.69E-46 |
MS.gene055499 | MS.gene21677 | 0.848334 | 6.55E-60 | -1.69E-46 |
MS.gene055502 | MS.gene21677 | 0.803549 | 3.31E-49 | -1.69E-46 |
MS.gene055633 | MS.gene21677 | 0.834764 | 2.48E-56 | -1.69E-46 |
MS.gene055636 | MS.gene21677 | 0.849778 | 2.60E-60 | -1.69E-46 |
MS.gene055638 | MS.gene21677 | 0.815238 | 1.02E-51 | -1.69E-46 |
MS.gene055647 | MS.gene21677 | 0.909388 | 6.02E-82 | -1.69E-46 |
MS.gene055722 | MS.gene21677 | 0.835968 | 1.23E-56 | -1.69E-46 |
MS.gene05592 | MS.gene21677 | 0.804306 | 2.30E-49 | -1.69E-46 |
MS.gene055941 | MS.gene21677 | 0.824287 | 8.76E-54 | -1.69E-46 |
MS.gene056083 | MS.gene21677 | 0.80608 | 9.79E-50 | -1.69E-46 |
MS.gene056374 | MS.gene21677 | 0.838626 | 2.57E-57 | -1.69E-46 |
MS.gene056410 | MS.gene21677 | 0.815942 | 7.14E-52 | -1.69E-46 |
MS.gene056452 | MS.gene21677 | 0.809728 | 1.64E-50 | -1.69E-46 |
MS.gene056549 | MS.gene21677 | 0.80071 | 1.27E-48 | -1.69E-46 |
MS.gene056609 | MS.gene21677 | 0.812478 | 4.15E-51 | -1.69E-46 |
MS.gene056657 | MS.gene21677 | 0.828825 | 7.25E-55 | -1.69E-46 |
MS.gene056897 | MS.gene21677 | 0.804987 | 1.66E-49 | -1.69E-46 |
MS.gene056942 | MS.gene21677 | 0.822138 | 2.78E-53 | -1.69E-46 |
MS.gene057011 | MS.gene21677 | 0.854981 | 8.57E-62 | -1.69E-46 |
MS.gene057123 | MS.gene21677 | 0.807072 | 6.04E-50 | -1.69E-46 |
MS.gene057129 | MS.gene21677 | 0.832763 | 7.85E-56 | -1.69E-46 |
MS.gene057146 | MS.gene21677 | 0.831353 | 1.75E-55 | -1.69E-46 |
MS.gene057295 | MS.gene21677 | 0.805049 | 1.61E-49 | -1.69E-46 |
MS.gene057331 | MS.gene21677 | 0.816667 | 4.91E-52 | -1.69E-46 |
MS.gene057416 | MS.gene21677 | 0.852781 | 3.68E-61 | -1.69E-46 |
MS.gene058019 | MS.gene21677 | 0.879832 | 9.03E-70 | -1.69E-46 |
MS.gene058293 | MS.gene21677 | 0.841347 | 5.02E-58 | -1.69E-46 |
MS.gene058419 | MS.gene21677 | 0.808015 | 3.81E-50 | -1.69E-46 |
MS.gene058660 | MS.gene21677 | 0.846025 | 2.81E-59 | -1.69E-46 |
MS.gene058903 | MS.gene21677 | 0.803454 | 3.46E-49 | -1.69E-46 |
MS.gene059029 | MS.gene21677 | 0.803089 | 4.12E-49 | -1.69E-46 |
MS.gene059367 | MS.gene21677 | 0.800444 | 1.44E-48 | -1.69E-46 |
MS.gene059455 | MS.gene21677 | 0.822691 | 2.07E-53 | -1.69E-46 |
MS.gene059536 | MS.gene21677 | 0.862415 | 5.15E-64 | -1.69E-46 |
MS.gene059597 | MS.gene21677 | 0.831294 | 1.81E-55 | -1.69E-46 |
MS.gene059676 | MS.gene21677 | 0.843681 | 1.21E-58 | -1.69E-46 |
MS.gene059688 | MS.gene21677 | 0.822198 | 2.69E-53 | -1.69E-46 |
MS.gene059692 | MS.gene21677 | 0.825515 | 4.50E-54 | -1.69E-46 |
MS.gene059695 | MS.gene21677 | 0.82802 | 1.13E-54 | -1.69E-46 |
MS.gene059711 | MS.gene21677 | 0.84516 | 4.83E-59 | -1.69E-46 |
MS.gene059718 | MS.gene21677 | 0.823828 | 1.12E-53 | -1.69E-46 |
MS.gene059858 | MS.gene21677 | 0.816348 | 5.79E-52 | -1.69E-46 |
MS.gene059960 | MS.gene21677 | 0.857429 | 1.64E-62 | -1.69E-46 |
MS.gene060193 | MS.gene21677 | 0.808342 | 3.25E-50 | -1.69E-46 |
MS.gene060356 | MS.gene21677 | 0.866979 | 1.92E-65 | -1.69E-46 |
MS.gene060804 | MS.gene21677 | 0.846928 | 1.60E-59 | -1.69E-46 |
MS.gene060818 | MS.gene21677 | 0.805385 | 1.37E-49 | -1.69E-46 |
MS.gene060837 | MS.gene21677 | 0.821709 | 3.50E-53 | -1.69E-46 |
MS.gene061041 | MS.gene21677 | 0.813362 | 2.66E-51 | -1.69E-46 |
MS.gene061134 | MS.gene21677 | 0.801053 | 1.08E-48 | -1.69E-46 |
MS.gene061150 | MS.gene21677 | 0.816532 | 5.27E-52 | -1.69E-46 |
MS.gene061171 | MS.gene21677 | 0.817796 | 2.74E-52 | -1.69E-46 |
MS.gene061200 | MS.gene21677 | 0.891451 | 3.92E-74 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21677.t1 | MTR_5g009070 | 98.675 | 755 | 8 | 2 | 7 | 760 | 1 | 754 | 0.0 | 1510 |
MS.gene21677.t1 | MTR_5g009070 | 98.113 | 636 | 10 | 2 | 7 | 641 | 1 | 635 | 0.0 | 1272 |
MS.gene21677.t1 | MTR_4g087895 | 38.585 | 311 | 189 | 1 | 79 | 389 | 81 | 389 | 1.27e-60 | 211 |
MS.gene21677.t1 | MTR_2g015390 | 37.651 | 332 | 205 | 1 | 58 | 389 | 62 | 391 | 2.50e-56 | 199 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21677.t1 | AT1G08520 | 86.842 | 684 | 89 | 1 | 77 | 760 | 78 | 760 | 0.0 | 1131 |
MS.gene21677.t1 | AT5G45930 | 38.040 | 347 | 209 | 3 | 42 | 385 | 40 | 383 | 6.75e-61 | 211 |
MS.gene21677.t1 | AT4G18480 | 36.438 | 365 | 223 | 3 | 26 | 389 | 37 | 393 | 2.28e-60 | 210 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGTTCTTCATTGGATTCT+TGG | 0.130094 | 5.2:+2793212 | None:intergenic |
TTCCCTCTTGCTGCTGTTAT+TGG | 0.145624 | 5.2:-2801132 | MS.gene21677:CDS |
AATTCTTGTGATGTAGGTTT+AGG | 0.198528 | 5.2:+2786050 | None:intergenic |
TGGAATTGCAACAGAATTTC+AGG | 0.217491 | 5.2:-2798936 | MS.gene21677:CDS |
TTCTTCATTCTGTTCTTCAT+TGG | 0.223207 | 5.2:+2793204 | None:intergenic |
CTGAAAATGTCTAGGCTGTT+AGG | 0.234330 | 5.2:-2786199 | MS.gene21677:intron |
CTCCTTCAGTCAATACATTA+AGG | 0.244704 | 5.2:+2799482 | None:intergenic |
TGTTGATGAAATTAATCTTT+TGG | 0.288162 | 5.2:-2799527 | MS.gene21677:CDS |
GATAAGGTGCAGCAGCTCTA+AGG | 0.296257 | 5.2:+2792356 | None:intergenic |
AGAACCCTCGTCAGGGTTAT+AGG | 0.296595 | 5.2:+2799396 | None:intergenic |
CTGTGGCGAAGTATTTAAAA+TGG | 0.300420 | 5.2:-2798909 | MS.gene21677:CDS |
AACCAGTGACCTTACTCTTC+TGG | 0.303250 | 5.2:+2800403 | None:intergenic |
ATGAAAATAGAGATTGGAAT+TGG | 0.317638 | 5.2:+2801313 | None:intergenic |
CTTCGCGCTCAATCTGAAAA+TGG | 0.319522 | 5.2:-2801222 | MS.gene21677:CDS |
CACGGCGCCTCTGTGCTTGT+TGG | 0.321269 | 5.2:+2792784 | None:intergenic |
ATTCTTGTGATGTAGGTTTA+GGG | 0.322239 | 5.2:+2786051 | None:intergenic |
AAGCTCGATGCTAGTACTTA+TGG | 0.326021 | 5.2:-2801165 | MS.gene21677:CDS |
TCAGTAGCGGCAGCAGCTTC+AGG | 0.330307 | 5.2:+2786077 | None:intergenic |
GAAGCATTGGCTTGATATAT+CGG | 0.333120 | 5.2:+2792715 | None:intergenic |
GAGCCAACATATCTTTAAAA+AGG | 0.334260 | 5.2:-2786109 | MS.gene21677:CDS |
TGTCAAATCTCCCTTTGTTC+AGG | 0.336864 | 5.2:-2799797 | MS.gene21677:intron |
TGCTAAGTGCTTAGCTGCTC+TGG | 0.349242 | 5.2:-2794307 | MS.gene21677:CDS |
TCAACTGCTAATCTCTTTAC+AGG | 0.364991 | 5.2:+2792385 | None:intergenic |
GAACCTTCTACTACTTCAAT+AGG | 0.368958 | 5.2:+2800451 | None:intergenic |
AGTAAATATTGTTGAAAGAG+AGG | 0.376476 | 5.2:-2799461 | MS.gene21677:CDS |
AGGTGCAGCACTTAAGCTTC+TGG | 0.376539 | 5.2:-2791161 | MS.gene21677:CDS |
ACGGCGCCTCTGTGCTTGTT+GGG | 0.379485 | 5.2:+2792785 | None:intergenic |
TTTATGCTTCAGATTCCTCT+TGG | 0.379940 | 5.2:-2799661 | MS.gene21677:intron |
GAAAACAAGTTTGTCTCAAC+AGG | 0.387463 | 5.2:-2785525 | MS.gene21677:CDS |
CCGCCTATTGAAGTAGTAGA+AGG | 0.388769 | 5.2:-2800454 | MS.gene21677:CDS |
AAAGAGAGGGAATCAGCTTT+AGG | 0.389062 | 5.2:-2799447 | MS.gene21677:CDS |
ATTGGAGGGATTGCTATATC+AGG | 0.389470 | 5.2:-2800529 | MS.gene21677:CDS |
ACTCGACATGTTTGATGAAA+TGG | 0.393357 | 5.2:+2801270 | None:intergenic |
CAGAGGCGCCGTGGGAAGGC+TGG | 0.396114 | 5.2:-2792774 | MS.gene21677:CDS |
TATCTCAAGGATGTTACTAT+TGG | 0.405395 | 5.2:-2797942 | MS.gene21677:CDS |
AGCTTCGGAACGCTGCGTTT+TGG | 0.406847 | 5.2:+2801243 | None:intergenic |
TCAGATTGAGCGCGAAGCTT+CGG | 0.408481 | 5.2:+2801228 | None:intergenic |
AGCAATCAGAAGGGGCCTGC+AGG | 0.411285 | 5.2:+2799420 | None:intergenic |
TTATTATTTGCCAAATGCTT+CGG | 0.411507 | 5.2:-2785381 | MS.gene21677:CDS |
GCATCAAAGATAAATTCTTC+AGG | 0.419594 | 5.2:+2792846 | None:intergenic |
TGTGGAGGCGGTGGAGGCGG+AGG | 0.426484 | 5.2:+2793238 | None:intergenic |
TGGGCACGAGGGATCTGAAT+TGG | 0.428468 | 5.2:+2800423 | None:intergenic |
ACCTACATCACAAGAATTGA+AGG | 0.430273 | 5.2:-2786045 | MS.gene21677:intron |
ACCAGTGACCTTACTCTTCT+GGG | 0.432028 | 5.2:+2800404 | None:intergenic |
ATAGCAATCCCTCCAATCCT+AGG | 0.437606 | 5.2:+2800535 | None:intergenic |
GGAGGCGGTGGAGGCGGAGG+CGG | 0.438692 | 5.2:+2793241 | None:intergenic |
ACAACAGCATCCGAAGCATT+TGG | 0.441288 | 5.2:+2785371 | None:intergenic |
AGGAACTGCTAAAACGATAA+TGG | 0.441397 | 5.2:-2800500 | MS.gene21677:CDS |
TGAAAATGTCTAGGCTGTTA+GGG | 0.448599 | 5.2:-2786198 | MS.gene21677:intron |
GAAAGGCTTCCGTGTGGTGG+AGG | 0.449203 | 5.2:-2786602 | MS.gene21677:CDS |
CAAAGAGGAAGAAGAAGAAG+AGG | 0.450450 | 5.2:-2793179 | MS.gene21677:CDS |
AGGAGTACCTTTGGAAGCAT+TGG | 0.456193 | 5.2:+2792702 | None:intergenic |
GTCACAGAGGACAGACTCAT+TGG | 0.461495 | 5.2:-2799637 | MS.gene21677:CDS |
AAGTTATACAAGCAGGGATC+AGG | 0.461637 | 5.2:-2791134 | MS.gene21677:intron |
TGCTCTGGAGGGACGTGAAA+AGG | 0.461890 | 5.2:-2794292 | MS.gene21677:CDS |
CTCCTTAATGTATTGACTGA+AGG | 0.462232 | 5.2:-2799484 | MS.gene21677:CDS |
TTATGAAATGCAGATCATCT+TGG | 0.465025 | 5.2:-2797973 | MS.gene21677:intron |
GTGGAAGCATGGCATTGAAC+AGG | 0.466542 | 5.2:-2791198 | MS.gene21677:CDS |
GCTGGGAAGATATATAAATC+AGG | 0.467269 | 5.2:-2785573 | MS.gene21677:CDS |
GTTCAATGCCATGCTTCCAC+TGG | 0.469040 | 5.2:+2791201 | None:intergenic |
GAATTTATCTTTGATGCTGA+AGG | 0.474323 | 5.2:-2792840 | MS.gene21677:CDS |
ATGCAAACAACATACGGAAT+GGG | 0.475833 | 5.2:-2801375 | MS.gene21677:CDS |
GCAATCAGAAGGGGCCTGCA+GGG | 0.479613 | 5.2:+2799421 | None:intergenic |
GCCATTGCAATCGATCTAGA+AGG | 0.482231 | 5.2:+2786638 | None:intergenic |
ACCTTCAATTCTTGTGATGT+AGG | 0.482578 | 5.2:+2786044 | None:intergenic |
GCAGAGAAAAGTGGCGATGT+TGG | 0.482876 | 5.2:-2786164 | MS.gene21677:CDS |
GGAGGGTCACCCCTTGCCCA+TGG | 0.485712 | 5.2:-2786584 | MS.gene21677:CDS |
TTGCCCTTCCAGCCTTCCCA+CGG | 0.486145 | 5.2:+2792766 | None:intergenic |
AAGAGAATGGCACGTAAAGC+AGG | 0.487735 | 5.2:-2792262 | MS.gene21677:CDS |
TCACGAACAGAACCCTCGTC+AGG | 0.489907 | 5.2:+2799388 | None:intergenic |
CATGCAAACAACATACGGAA+TGG | 0.490887 | 5.2:-2801376 | MS.gene21677:CDS |
GCTACTGACCCTAGGATTGG+AGG | 0.491446 | 5.2:-2800544 | MS.gene21677:CDS |
TCAGCTTTAGGCACCCCTGC+AGG | 0.492155 | 5.2:-2799435 | MS.gene21677:CDS |
GGAGTTGAAGATTAGTGTGA+GGG | 0.494526 | 5.2:+2801334 | None:intergenic |
AACAGGATGCAGAATGCAAA+AGG | 0.496428 | 5.2:-2791181 | MS.gene21677:CDS |
GCGCCGTGGGAAGGCTGGAA+GGG | 0.499835 | 5.2:-2792769 | MS.gene21677:CDS |
GGCTTTACGAGGTGGTGTCC+AGG | 0.504444 | 5.2:-2797889 | MS.gene21677:intron |
GGCGCCGTGGGAAGGCTGGA+AGG | 0.507433 | 5.2:-2792770 | MS.gene21677:CDS |
AGAATCATATTCCACACGTT+GGG | 0.507650 | 5.2:+2799843 | None:intergenic |
ATGAAATTCTTGAGGTGGCT+GGG | 0.509186 | 5.2:-2785590 | MS.gene21677:CDS |
TGAGCTTCAGCAAGTAGGCC+TGG | 0.509356 | 5.2:+2799565 | None:intergenic |
CTGAATAGTACCTGAACAAA+GGG | 0.509664 | 5.2:+2799787 | None:intergenic |
TCTCCTCCTCCTCAGAAGTA+AGG | 0.510330 | 5.2:+2801190 | None:intergenic |
GTAAATATTGTTGAAAGAGA+GGG | 0.512847 | 5.2:-2799460 | MS.gene21677:CDS |
CAAAGAACAATTAAAATACC+TGG | 0.514578 | 5.2:-2797919 | MS.gene21677:CDS |
TACTTGGGGCTACTGACCCT+AGG | 0.515179 | 5.2:-2800552 | MS.gene21677:CDS |
AATGTCTAGGCTGTTAGGGT+TGG | 0.518126 | 5.2:-2786194 | MS.gene21677:intron |
TGACATGAGGGCAAAGAGAA+TGG | 0.518308 | 5.2:-2792275 | MS.gene21677:CDS |
AGAGGAAGAAGAAGAAGAGG+AGG | 0.518585 | 5.2:-2793176 | MS.gene21677:intron |
TGGCAGAAAGTTATACAAGC+AGG | 0.519429 | 5.2:-2791141 | MS.gene21677:CDS |
ATAAGGTGCAGCAGCTCTAA+GGG | 0.521352 | 5.2:+2792357 | None:intergenic |
CGAGGGATCTGAATTGGCTA+TGG | 0.524852 | 5.2:+2800429 | None:intergenic |
CTCGTAAAGCCTCAAGAACC+AGG | 0.525256 | 5.2:+2797901 | None:intergenic |
GATTATCAGAAACAATTGAC+CGG | 0.525928 | 5.2:+2793284 | None:intergenic |
ATTATTGTAGGTGATATTTG+TGG | 0.528658 | 5.2:-2791230 | MS.gene21677:intron |
AACAAGCACAGAGGCGCCGT+GGG | 0.528819 | 5.2:-2792782 | MS.gene21677:CDS |
AGCACAGAGGCGCCGTGGGA+AGG | 0.530519 | 5.2:-2792778 | MS.gene21677:CDS |
GATGAAATTCTTGAGGTGGC+TGG | 0.531208 | 5.2:-2785591 | MS.gene21677:CDS |
TTCGGATGCTGTTGTCTCGA+TGG | 0.532713 | 5.2:-2785363 | MS.gene21677:CDS |
ATTAAAATACCTGGTTCTTG+AGG | 0.532815 | 5.2:-2797910 | MS.gene21677:CDS |
GGCACGTAAAGCAGGAGCAT+TGG | 0.535611 | 5.2:-2792254 | MS.gene21677:intron |
CTTGAAAGGCTTCCGTGTGG+TGG | 0.535913 | 5.2:-2786605 | MS.gene21677:CDS |
CACCTTATCAAAAGTTGCGA+AGG | 0.536565 | 5.2:-2792342 | MS.gene21677:CDS |
CTTCAGCAAGTAGGCCTGGT+TGG | 0.538289 | 5.2:+2799569 | None:intergenic |
TGAAATGGCAAAGAGAGAAA+CGG | 0.542028 | 5.2:+2801285 | None:intergenic |
CGTGGTAAGACCATGGGCAA+GGG | 0.542333 | 5.2:+2786574 | None:intergenic |
AATGAAGGATGAAATTCTTG+AGG | 0.542686 | 5.2:-2785598 | MS.gene21677:intron |
GAAAACCGTGTTGCAGCTGT+TGG | 0.544146 | 5.2:-2798956 | MS.gene21677:CDS |
ACAGAATGAAGAAGACAAAG+AGG | 0.546778 | 5.2:-2793194 | MS.gene21677:CDS |
TCAATCTGAAAATGGTGCTA+TGG | 0.546998 | 5.2:-2801214 | MS.gene21677:CDS |
GGTCCTTACTTCTGAGGAGG+AGG | 0.549852 | 5.2:-2801193 | MS.gene21677:CDS |
CATTGGATCAGTTGATGTTG+AGG | 0.551202 | 5.2:-2799620 | MS.gene21677:CDS |
AATTTATCTTTGATGCTGAA+GGG | 0.551889 | 5.2:-2792839 | MS.gene21677:CDS |
GGATGACAAGGATGAAGAGA+AGG | 0.558689 | 5.2:-2792889 | MS.gene21677:CDS |
ACCTTACTCTTCTGGGCACG+AGG | 0.558993 | 5.2:+2800411 | None:intergenic |
AAAGGCTTCCGTGTGGTGGA+GGG | 0.562835 | 5.2:-2786601 | MS.gene21677:CDS |
TGCTATGGTCCTTACTTCTG+AGG | 0.563672 | 5.2:-2801199 | MS.gene21677:CDS |
GGGGCTACTGACCCTAGGAT+TGG | 0.568553 | 5.2:-2800547 | MS.gene21677:CDS |
ATTTATCTTTGATGCTGAAG+GGG | 0.570562 | 5.2:-2792838 | MS.gene21677:CDS |
GGTTATAGGTAGCAATCAGA+AGG | 0.570961 | 5.2:+2799410 | None:intergenic |
TAAGTGCTTAGCTGCTCTGG+AGG | 0.572301 | 5.2:-2794304 | MS.gene21677:CDS |
GTTCTTGAGGCTTTACGAGG+TGG | 0.573276 | 5.2:-2797897 | MS.gene21677:CDS |
CTGTTGTCTCGATGGCAACA+AGG | 0.573710 | 5.2:-2785355 | MS.gene21677:CDS |
CCGTGGTAAGACCATGGGCA+AGG | 0.574710 | 5.2:+2786573 | None:intergenic |
CAATCAGAAGGGGCCTGCAG+GGG | 0.574993 | 5.2:+2799422 | None:intergenic |
TTCTTGTGATGTAGGTTTAG+GGG | 0.576948 | 5.2:+2786052 | None:intergenic |
CTGGTTCTTGAGGCTTTACG+AGG | 0.578391 | 5.2:-2797900 | MS.gene21677:CDS |
TGGCTAGGAAACGTCTTGAA+AGG | 0.581024 | 5.2:-2786619 | MS.gene21677:CDS |
CAACAAGCACAGAGGCGCCG+TGG | 0.582485 | 5.2:-2792783 | MS.gene21677:CDS |
TGGAGTTGAAGATTAGTGTG+AGG | 0.583015 | 5.2:+2801333 | None:intergenic |
GTTGAGGAGTCTGTGAAGAC+TGG | 0.586435 | 5.2:-2799604 | MS.gene21677:CDS |
GGCACGACTGTTTACCAACC+AGG | 0.589699 | 5.2:-2799583 | MS.gene21677:CDS |
GGATTAAATGCAGAGAAAAG+TGG | 0.591384 | 5.2:-2786173 | MS.gene21677:CDS |
CTACTGACCCTAGGATTGGA+GGG | 0.596769 | 5.2:-2800543 | MS.gene21677:CDS |
ATCGCATTGCAATTAACTTG+AGG | 0.596901 | 5.2:-2799354 | MS.gene21677:intron |
TCTTTCTGAACAGGATGACA+AGG | 0.597752 | 5.2:-2792901 | MS.gene21677:intron |
CTGTCCTCTGTGACTCCAAG+AGG | 0.597863 | 5.2:+2799646 | None:intergenic |
TCTGAATAGTACCTGAACAA+AGG | 0.600732 | 5.2:+2799786 | None:intergenic |
GGCAGAAAGTTATACAAGCA+GGG | 0.600782 | 5.2:-2791140 | MS.gene21677:CDS |
ATTATCAGAAACAATTGACC+GGG | 0.600869 | 5.2:+2793285 | None:intergenic |
CTAGATCGATTGCAATGGCT+AGG | 0.601938 | 5.2:-2786634 | MS.gene21677:CDS |
GAGATTGCTAGAGTTGCTCA+AGG | 0.602162 | 5.2:-2785492 | MS.gene21677:intron |
TGCATACCGTGGTAAGACCA+TGG | 0.605407 | 5.2:+2786567 | None:intergenic |
TAGAATTGGTCATTCTCCCC+CGG | 0.606496 | 5.2:-2793303 | MS.gene21677:CDS |
ATATTTGTGGTTGATGCCAG+TGG | 0.606523 | 5.2:-2791217 | MS.gene21677:CDS |
TTTATCTTTGATGCTGAAGG+GGG | 0.606605 | 5.2:-2792837 | MS.gene21677:CDS |
CTCTATGAGCTTCAGCAAGT+AGG | 0.607534 | 5.2:+2799560 | None:intergenic |
GTATCAATAATTCCTTTCCG+TGG | 0.607702 | 5.2:-2786686 | MS.gene21677:CDS |
CTACTTGCTGAAGCTCATAG+AGG | 0.607951 | 5.2:-2799559 | MS.gene21677:CDS |
GAACTTCAGCTGAATCTCCA+CGG | 0.608553 | 5.2:+2786669 | None:intergenic |
AGATGATCTTGCCCAACGTG+TGG | 0.610183 | 5.2:-2799854 | MS.gene21677:CDS |
ATGATTGTTGCAATCACTGA+TGG | 0.614936 | 5.2:-2786134 | MS.gene21677:CDS |
CAGAATCATATTCCACACGT+TGG | 0.618091 | 5.2:+2799842 | None:intergenic |
ACCTTATCAAAAGTTGCGAA+GGG | 0.620961 | 5.2:-2792341 | MS.gene21677:CDS |
TGGCCAATAACAGCAGCAAG+AGG | 0.621831 | 5.2:+2801129 | None:intergenic |
TATCAAGCCAATGCTTCCAA+AGG | 0.621959 | 5.2:-2792709 | MS.gene21677:intron |
TCAGCTGAATCTCCACGGAA+AGG | 0.621995 | 5.2:+2786674 | None:intergenic |
GCATACCGTGGTAAGACCAT+GGG | 0.622210 | 5.2:+2786568 | None:intergenic |
AAGTGCTTAGCTGCTCTGGA+GGG | 0.622335 | 5.2:-2794303 | MS.gene21677:CDS |
CAATTCCAACAGCTGCAACA+CGG | 0.623294 | 5.2:+2798951 | None:intergenic |
GAGTTGAAGATTAGTGTGAG+GGG | 0.625085 | 5.2:+2801335 | None:intergenic |
TATGGTCCTTACTTCTGAGG+AGG | 0.625421 | 5.2:-2801196 | MS.gene21677:CDS |
GGTTGATGCCAGTGGAAGCA+TGG | 0.625498 | 5.2:-2791209 | MS.gene21677:CDS |
GTTATAGGTAGCAATCAGAA+GGG | 0.625655 | 5.2:+2799411 | None:intergenic |
TAGCAATCCCTCCAATCCTA+GGG | 0.627946 | 5.2:+2800536 | None:intergenic |
TGTTGTCTCGATGGCAACAA+GGG | 0.629826 | 5.2:-2785354 | MS.gene21677:CDS |
GTGGTAAGACCATGGGCAAG+GGG | 0.630171 | 5.2:+2786575 | None:intergenic |
CACGAACAGAACCCTCGTCA+GGG | 0.631145 | 5.2:+2799389 | None:intergenic |
CGTGTGGAATATGATTCTGA+TGG | 0.632318 | 5.2:-2799838 | MS.gene21677:CDS |
ACCTTCTAGATCGATTGCAA+TGG | 0.641122 | 5.2:-2786639 | MS.gene21677:CDS |
GGCCAATAACAGCAGCAAGA+GGG | 0.644982 | 5.2:+2801130 | None:intergenic |
CTTGGCTAGAGAGTATCTCA+AGG | 0.645683 | 5.2:-2797955 | MS.gene21677:CDS |
AGGGGTGACCCTCCACCACA+CGG | 0.649940 | 5.2:+2786593 | None:intergenic |
TACAGACAATGCAAAGACAC+AGG | 0.654379 | 5.2:-2798876 | MS.gene21677:intron |
AGGTTTAGGGGCATCAGTAG+CGG | 0.659828 | 5.2:+2786064 | None:intergenic |
TGCTACCTATAACCCTGACG+AGG | 0.663872 | 5.2:-2799401 | MS.gene21677:CDS |
AGTATTTAAAATGGTTGACG+AGG | 0.664326 | 5.2:-2798900 | MS.gene21677:CDS |
GAAGGATGAAATTCTTGAGG+TGG | 0.669416 | 5.2:-2785595 | MS.gene21677:intron |
CCTTACTCTTCTGGGCACGA+GGG | 0.673244 | 5.2:+2800412 | None:intergenic |
TGTCTCAACAGGTTTCGCGA+AGG | 0.673285 | 5.2:-2785514 | MS.gene21677:CDS |
GAGGGATTGCTATATCAGGA+AGG | 0.673630 | 5.2:-2800525 | MS.gene21677:CDS |
CCTTGCCCATGGTCTTACCA+CGG | 0.679671 | 5.2:-2786573 | MS.gene21677:intron |
ATTGCAATCGATCTAGAAGG+TGG | 0.681426 | 5.2:+2786641 | None:intergenic |
CCTTCTACTACTTCAATAGG+CGG | 0.685944 | 5.2:+2800454 | None:intergenic |
ATTGCTATATCAGGAAGGCG+AGG | 0.686132 | 5.2:-2800520 | MS.gene21677:CDS |
TTATAGGTAGCAATCAGAAG+GGG | 0.696472 | 5.2:+2799412 | None:intergenic |
TTATCAGAAACAATTGACCG+GGG | 0.706559 | 5.2:+2793286 | None:intergenic |
TCTTTGCCCAACAAGCACAG+AGG | 0.710858 | 5.2:-2792791 | MS.gene21677:CDS |
GCTAAAACGATAATGGCACG+TGG | 0.711240 | 5.2:-2800493 | MS.gene21677:CDS |
GCTACCTATAACCCTGACGA+GGG | 0.713287 | 5.2:-2799400 | MS.gene21677:CDS |
ACAGAATTTCAGGATAACTG+TGG | 0.720569 | 5.2:-2798926 | MS.gene21677:CDS |
CGTCTTGAAAGGCTTCCGTG+TGG | 0.726411 | 5.2:-2786608 | MS.gene21677:CDS |
GGGACGTGAAAAGGTTTACG+CGG | 0.726630 | 5.2:-2794283 | MS.gene21677:CDS |
GATTCCTCTTGGAGTCACAG+AGG | 0.727534 | 5.2:-2799650 | MS.gene21677:CDS |
TATCAGAAACAATTGACCGG+GGG | 0.731885 | 5.2:+2793287 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 2785325 | 2801397 | 2785325 | ID=MS.gene21677 |
chr5.2 | mRNA | 2785325 | 2801397 | 2785325 | ID=MS.gene21677.t1;Parent=MS.gene21677 |
chr5.2 | exon | 2801128 | 2801397 | 2801128 | ID=MS.gene21677.t1.exon1;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2801128 | 2801397 | 2801128 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2800418 | 2800596 | 2800418 | ID=MS.gene21677.t1.exon2;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2800418 | 2800596 | 2800418 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2799798 | 2799882 | 2799798 | ID=MS.gene21677.t1.exon3;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2799798 | 2799882 | 2799798 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2799355 | 2799671 | 2799355 | ID=MS.gene21677.t1.exon4;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2799355 | 2799671 | 2799355 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2798877 | 2799000 | 2798877 | ID=MS.gene21677.t1.exon5;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2798877 | 2799000 | 2798877 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2797890 | 2797982 | 2797890 | ID=MS.gene21677.t1.exon6;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2797890 | 2797982 | 2797890 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2794266 | 2794361 | 2794266 | ID=MS.gene21677.t1.exon7;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2794266 | 2794361 | 2794266 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2793177 | 2793326 | 2793177 | ID=MS.gene21677.t1.exon8;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2793177 | 2793326 | 2793177 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2792710 | 2792910 | 2792710 | ID=MS.gene21677.t1.exon9;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2792710 | 2792910 | 2792710 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2792255 | 2792410 | 2792255 | ID=MS.gene21677.t1.exon10;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2792255 | 2792410 | 2792255 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2791135 | 2791242 | 2791135 | ID=MS.gene21677.t1.exon11;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2791135 | 2791242 | 2791135 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2786574 | 2786708 | 2786574 | ID=MS.gene21677.t1.exon12;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2786574 | 2786708 | 2786574 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2786046 | 2786207 | 2786046 | ID=MS.gene21677.t1.exon13;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2786046 | 2786207 | 2786046 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2785493 | 2785613 | 2785493 | ID=MS.gene21677.t1.exon14;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2785493 | 2785613 | 2785493 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
chr5.2 | exon | 2785325 | 2785410 | 2785325 | ID=MS.gene21677.t1.exon15;Parent=MS.gene21677.t1 |
chr5.2 | CDS | 2785325 | 2785410 | 2785325 | ID=cds.MS.gene21677.t1;Parent=MS.gene21677.t1 |
Gene Sequence |
Protein sequence |