AlfalfaGEDB | MS.gene30901

M. sativa cultivar XinJiangDaYe / MS.gene30901

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12854.10 PF13041.9 PF13812.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30901.t1	XP_013468247.1	92.2	720	55	1	1	720	1	719	0.00E+00	1276.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30901.t1	Q9SF38	64.8	702	208	5	46	715	81	775	8.8e-253	874.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30901.t1	A0A072VJQ9	92.2	720	55	1	1	720	1	719	0.0e+00	1276.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene30901	0.845532	3.83E-59	-1.69E-46
MS.gene049171	MS.gene30901	0.864482	1.18E-64	-1.69E-46
MS.gene049217	MS.gene30901	0.803917	2.77E-49	-1.69E-46
MS.gene049222	MS.gene30901	0.827954	1.18E-54	-1.69E-46
MS.gene049257	MS.gene30901	0.846944	1.58E-59	-1.69E-46
MS.gene049285	MS.gene30901	0.815276	1.00E-51	-1.69E-46
MS.gene049427	MS.gene30901	0.806362	8.53E-50	-1.69E-46
MS.gene049609	MS.gene30901	0.821907	3.15E-53	-1.69E-46
MS.gene049633	MS.gene30901	0.854836	9.44E-62	-1.69E-46
MS.gene049805	MS.gene30901	0.81044	1.15E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30901.t1	MTR_1g066900	96.944	720	21	1	1	720	1	719	0.0	1447
MS.gene30901.t1	MTR_4g081540	24.891	691	446	17	69	702	111	785	3.56e-45	173
MS.gene30901.t1	MTR_5g045620	24.361	665	405	18	57	702	73	658	6.16e-41	159
MS.gene30901.t1	MTR_5g044930	24.206	661	403	17	61	702	81	662	7.14e-41	159
MS.gene30901.t1	MTR_2g049740	25.048	519	308	10	68	582	110	551	3.64e-37	149
MS.gene30901.t1	MTR_2g049740	29.528	254	175	2	349	602	217	466	2.29e-26	115
MS.gene30901.t1	MTR_2g049740	21.580	519	337	9	199	683	364	846	1.02e-22	104
MS.gene30901.t1	MTR_2g049740	21.107	488	315	9	117	569	401	853	2.64e-19	93.2
MS.gene30901.t1	MTR_2g049740	23.197	319	214	4	352	664	150	443	2.67e-18	90.1
MS.gene30901.t1	MTR_2g049740	22.837	289	198	8	184	468	591	858	2.10e-12	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30901.t1	AT3G09650	66.176	748	211	9	1	715	37	775	0.0	997
MS.gene30901.t1	AT1G03100	23.706	734	468	16	38	702	82	792	2.58e-51	191
MS.gene30901.t1	AT1G69290	25.220	682	421	18	36	702	49	656	9.49e-43	165
MS.gene30901.t1	AT1G05670	25.815	399	270	9	224	602	233	625	4.76e-38	152
MS.gene30901.t1	AT1G05670	23.477	558	359	15	137	637	194	740	2.02e-31	131
MS.gene30901.t1	AT1G05670	25.902	305	206	4	352	656	275	559	1.03e-28	123
MS.gene30901.t1	AT1G05670	26.623	308	206	7	357	664	245	532	2.58e-23	105
MS.gene30901.t1	AT1G05670	25.815	399	270	9	224	602	233	625	4.76e-38	152
MS.gene30901.t1	AT1G05670	23.477	558	359	15	137	637	194	740	2.02e-31	131
MS.gene30901.t1	AT1G05670	25.902	305	206	4	352	656	275	559	1.03e-28	123

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Find 209 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGTTAGAGTTAGAGT+TGG	0.523414	1.2:+50317620	None:intergenic
AACATAAGAATATTGTGAAT+TGG	0.387027	1.2:+50316753	None:intergenic
AACCTACAATATTCTCCTCA+AGG	0.560602	1.2:-50316392	MS.gene30901:CDS
AACGTAAAACCGAAGAAGCT+TGG	0.488246	1.2:-50317512	MS.gene30901:CDS
AACTGCTGAGAAAATTGTTC+AGG	0.417262	1.2:-50316821	MS.gene30901:CDS
AAGAAAGCTGAGAGAGTAGA+CGG	0.590919	1.2:+50317442	None:intergenic
AAGACCCTTTGAGCCAGCTT+TGG	0.433267	1.2:+50316136	None:intergenic
AAGAGACGGATAGCCTCAGC+TGG	0.566424	1.2:+50317174	None:intergenic
AAGCATATACACCTAACACT+AGG	0.630921	1.2:-50316633	MS.gene30901:CDS
AAGCATGGATTTGACAACGG+AGG	0.705697	1.2:+50317275	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGGAGAGATCTTTGT+AGG	-	chr1.2:50316445-50316464	MS.gene30901:CDS	30.0%
AATGAAAGGTTATATGAAGG+CGG	-	chr1.2:50316638-50316657	MS.gene30901:CDS	30.0%
ATATTATACGACACAACATC+AGG	+	chr1.2:50316942-50316961	None:intergenic	30.0%
ATTCTTATTATGGAAGTGAG+TGG	-	chr1.2:50317657-50317676	MS.gene30901:CDS	30.0%
CTTAATGCTTGTGCTAATTT+GGG	-	chr1.2:50316171-50316190	MS.gene30901:CDS	30.0%
GAAGGTAATTCAAAAGATGA+AGG	-	chr1.2:50317220-50317239	MS.gene30901:CDS	30.0%
GGTTTGCCTAATTCTTATTA+TGG	-	chr1.2:50317647-50317666	MS.gene30901:CDS	30.0%
TACTAGTAAACATGCTTCAA+AGG	-	chr1.2:50317565-50317584	MS.gene30901:CDS	30.0%
TTAATGAGATGAGGGAAAAA+GGG	-	chr1.2:50317015-50317034	MS.gene30901:CDS	30.0%
TTTAATGAGATGAGGGAAAA+AGG	-	chr1.2:50317014-50317033	MS.gene30901:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	50315547	50317709	50315547	ID=MS.gene30901
chr1.2	mRNA	50315547	50317709	50315547	ID=MS.gene30901.t1;Parent=MS.gene30901
chr1.2	exon	50315547	50317709	50315547	ID=MS.gene30901.t1.exon1;Parent=MS.gene30901.t1
chr1.2	CDS	50315547	50317709	50315547	ID=cds.MS.gene30901.t1;Parent=MS.gene30901.t1

Gene Sequence

>MS.gene30901

ATGAACATTACTCTACTACAACCTCCATCATCATTCAACTTCACCAAAACCAACAACATCAAAAACACCAACTCTAACTCTAACTCCTTTGTCTTAAACTACACAAACACAACATCAATAACACCAACCTCAAAATCAGAACCACGCGACCAAAAGCTTCTAACACTTTTACAACAACGTAAAACCGAAGAAGCTTGGATTGTATACACTCACTCCCCTCACCTCCCTAACCCCACTTGCCTCAGCCGTCTACTCTCTCAGCTTTCTTACAACAACACTCCCTCTTCCCTCACGCGCGCTCAGTCCATCCTCACGCGCCTCCGTAATGAATCCCAGCTCCACCGTCTCGACTCCAATTCCCTCGGCCTCCTCGCCGTTGCCGCCGCTAAAGCTGGTCACACTATCTACGCTTCCTCCGTTGTCAAATCCATGCTTCGTTCCGGCTACCTTCCTCATGTCAAAGCTTGGAGTGCTGTAGTAAGCCGTCTCGCCTCCGACGATGATGCTTCCGGTCCAGCTGAGGCTATCCGTCTCTTCCATGCTGTCACGCGCCGGCTTAGGAAGCTCCCTGACCTTGAAATGGCGGCGGAGTCGCGGCCGGATACTGTGGCGTTCAATGCTGTGCTTAATGCTTGTGCTAATTTGGGTGATGGTAAGATGTTTTTACAAGTGTTTGATGAAATGCCGGGGTTTGGTGTTGTGCCTGATTCTTTGAGTTATAATATTGTTATGAAGCTTTGTTGTGGAAATGGTAGAAAAGATTTGCTTGTGTTTGTGTTAGAGAGGATTCTTGAGTTGAATATACCTTTGTGTATGACTACTTTGCATTCACTTGTTGCTGCTTATGTTGATTTTAATGATTTGGAAACTGCTGAGAAAATTGTTCAGGCTATGAGGGAAAAAAGGAGAGATCTTTGTAGGATACTTAGAGAGTCCAATTCACAATATTCTTATGTTGATGATGATGTTGATTCTGTTTTTCATAAGTTGCTTCCAAATTTGTTGATGGGTAAGAGTGACAATGGCAATGGGAATGATTTACCTTTGTTGCCAAAAGCATATACACCTAACACTAGGATTTACACAACTCTAATGAAAGGTTATATGAAGGCGGGGCGAGTTGCGGATACTGTAAGGATGCTCGAGGCAATGCGTTGTCAGGAGGATAGTGGCAGTCACCCTGACCATGTTTCCTATACCACGGTGGTTTCGGCACTTGTGAAGGCCGGTTTCATGGACCGGGCACGTCAAGTTCTTGCTGAAATGACAAGAATCGGTGTGCCTGCGAATCGGATAACCTACAATATTCTCCTCAAGGGTTACTGTAAACAGCTGCAGATGGACAAGGCAAGGGAGTTGCTTGAGGAGATGGCTGAGGATATTGGGATTGAGCCTGATGTTGTGTCGTATAATATACTTATTGATGGTTGTATATTAGTTGATGACAGTGCTGGTGCTCTTTCTTTCTTTAATGAGATGAGGGAAAAAGGGATAGCTCCTACAAAAATTAGTTACACTACTTTGATGAAAGCTTTTGCATTGTCTGGTCAACCAAAGCTGGCTCAAAGGGTCTTCGATGAAATGGTGAACGATGCTCGAGTGAGGGTGGATTTAATTGCTTGGAATATGTTGGTTGAAGGATATGGTAGGTTAGGGTTGGTTGAAGAGGTAAAGAAGGTAATTCAAAAGATGAAGGAAAATGGATTTTACCCTAATGTGAGCACCTATGGAAGTTTTGCCAATGCAATTTCATTGGCAAGAAAACCAGGTGAAGCACTTATACTTTGGAATGAAGTGAAGGAAAGGTGTGAGTTGGCAAAGGAAGGAGGGAAAACTGATTCTTCTGTTCCACCTTTGAAACCTGATGAAGGGCTTTTGGACACACTTGCTGATATATGTGTGAGGGCTGCTTTCTTTAGAAAGGCCTTGGAAATTGTGGCTTGCATGGAAGAAAATGGGATACCTCCAAATAAGACCAAGTATACTAGAATATATGTGGAAATGCATTCAAGAATGTTTACTAGTAAACATGCTTCAAAGGCTAGACAAGACAGAAGAGTGGAGAGGAAAAGAGCAGCCGAGGCTTTTAAGTTTTGGTTGGGTTTGCCTAATTCTTATTATGGAAGTGAGTGGAGGTTAGAACCTCTTGATGGATATGAGTGA

Protein sequence

>MS.gene30901.t1

MNITLLQPPSSFNFTKTNNIKNTNSNSNSFVLNYTNTTSITPTSKSEPRDQKLLTLLQQRKTEEAWIVYTHSPHLPNPTCLSRLLSQLSYNNTPSSLTRAQSILTRLRNESQLHRLDSNSLGLLAVAAAKAGHTIYASSVVKSMLRSGYLPHVKAWSAVVSRLASDDDASGPAEAIRLFHAVTRRLRKLPDLEMAAESRPDTVAFNAVLNACANLGDGKMFLQVFDEMPGFGVVPDSLSYNIVMKLCCGNGRKDLLVFVLERILELNIPLCMTTLHSLVAAYVDFNDLETAEKIVQAMREKRRDLCRILRESNSQYSYVDDDVDSVFHKLLPNLLMGKSDNGNGNDLPLLPKAYTPNTRIYTTLMKGYMKAGRVADTVRMLEAMRCQEDSGSHPDHVSYTTVVSALVKAGFMDRARQVLAEMTRIGVPANRITYNILLKGYCKQLQMDKARELLEEMAEDIGIEPDVVSYNILIDGCILVDDSAGALSFFNEMREKGIAPTKISYTTLMKAFALSGQPKLAQRVFDEMVNDARVRVDLIAWNMLVEGYGRLGLVEEVKKVIQKMKENGFYPNVSTYGSFANAISLARKPGEALILWNEVKERCELAKEGGKTDSSVPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKYTRIYVEMHSRMFTSKHASKARQDRRVERKRAAEAFKFWLGLPNSYYGSEWRLEPLDGYE