Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54414.t1 | XP_003621051.1 | 99.4 | 158 | 1 | 0 | 1 | 158 | 83 | 240 | 2.50E-87 | 331.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54414.t1 | Q9LYR5 | 86.1 | 158 | 22 | 0 | 1 | 158 | 99 | 256 | 1.4e-78 | 293.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54414.t1 | G7KXR3 | 99.4 | 158 | 1 | 0 | 1 | 158 | 83 | 240 | 1.8e-87 | 331.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene54414 | 0.802381 | 5.76E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene54414 | 0.865361 | 6.24E-65 | -1.69E-46 |
| MS.gene049173 | MS.gene54414 | 0.847571 | 1.06E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene54414 | 0.827365 | 1.63E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene54414 | 0.838326 | 3.07E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene54414 | 0.838442 | 2.87E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene54414 | 0.824856 | 6.43E-54 | -1.69E-46 |
| MS.gene04939 | MS.gene54414 | 0.829084 | 6.27E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene54414 | 0.832042 | 1.18E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene54414 | 0.839753 | 1.31E-57 | -1.69E-46 |
| MS.gene049805 | MS.gene54414 | 0.828266 | 9.89E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene54414 | 0.84199 | 3.40E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene54414 | 0.837969 | 3.80E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene54414 | 0.817582 | 3.06E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene54414 | 0.840954 | 6.37E-58 | -1.69E-46 |
| MS.gene050444 | MS.gene54414 | 0.832088 | 1.15E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene54414 | 0.839787 | 1.29E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene54414 | 0.836304 | 1.01E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene54414 | 0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene54414 | 0.816801 | 4.58E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene54414 | 0.824681 | 7.08E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene54414 | 0.810193 | 1.30E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene54414 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene54414 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene54414 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene54414 | 0.809238 | 2.09E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene54414 | 0.819864 | 9.28E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene54414 | 0.806444 | 8.20E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene54414 | 0.811187 | 7.94E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene54414 | 0.811865 | 5.65E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene54414 | 0.857925 | 1.17E-62 | -1.69E-46 |
| MS.gene052486 | MS.gene54414 | 0.807117 | 5.91E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene54414 | 0.810973 | 8.83E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene54414 | 0.847146 | 1.39E-59 | -1.69E-46 |
| MS.gene052505 | MS.gene54414 | 0.800296 | 1.54E-48 | -1.69E-46 |
| MS.gene052615 | MS.gene54414 | 0.818618 | 1.78E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene54414 | 0.847305 | 1.26E-59 | -1.69E-46 |
| MS.gene052825 | MS.gene54414 | 0.837079 | 6.42E-57 | -1.69E-46 |
| MS.gene052966 | MS.gene54414 | 0.822853 | 1.90E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene54414 | 0.82513 | 5.54E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene54414 | 0.811557 | 6.60E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene54414 | 0.806766 | 7.01E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene54414 | 0.817884 | 2.62E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene54414 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene54414 | 0.828141 | 1.06E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene54414 | 0.83065 | 2.61E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene54414 | 0.810808 | 9.59E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene54414 | 0.81213 | 4.95E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene54414 | 0.812348 | 4.44E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene54414 | 0.850444 | 1.69E-60 | -1.69E-46 |
| MS.gene054927 | MS.gene54414 | 0.807766 | 4.31E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene54414 | 0.823499 | 1.34E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene54414 | 0.817995 | 2.47E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene54414 | 0.834418 | 3.03E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene54414 | 0.862851 | 3.78E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene54414 | 0.820543 | 6.49E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene54414 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene54414 | 0.820375 | 7.09E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene54414 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene54414 | 0.815528 | 8.83E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene54414 | 0.842196 | 3.00E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene54414 | 0.838818 | 2.29E-57 | -1.69E-46 |
| MS.gene056083 | MS.gene54414 | 0.808321 | 3.28E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene54414 | 0.836407 | 9.53E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene54414 | 0.80366 | 3.13E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene54414 | 0.820179 | 7.86E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene54414 | 0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene056692 | MS.gene54414 | 0.838471 | 2.82E-57 | -1.69E-46 |
| MS.gene057048 | MS.gene54414 | 0.815582 | 8.59E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene54414 | 0.81093 | 9.02E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene54414 | 0.842132 | 3.12E-58 | -1.69E-46 |
| MS.gene057831 | MS.gene54414 | 0.824722 | 6.92E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene54414 | 0.829514 | 4.93E-55 | -1.69E-46 |
| MS.gene057857 | MS.gene54414 | 0.811832 | 5.75E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene54414 | 0.817332 | 3.48E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene54414 | 0.822649 | 2.12E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene54414 | 0.84954 | 3.03E-60 | -1.69E-46 |
| MS.gene058444 | MS.gene54414 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene54414 | 0.833646 | 4.73E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene54414 | 0.809748 | 1.62E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene54414 | 0.870377 | 1.53E-66 | -1.69E-46 |
| MS.gene059022 | MS.gene54414 | 0.835668 | 1.47E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene54414 | 0.845762 | 3.32E-59 | -1.69E-46 |
| MS.gene05912 | MS.gene54414 | 0.815936 | 7.16E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene54414 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene54414 | 0.828665 | 7.92E-55 | -1.69E-46 |
| MS.gene059455 | MS.gene54414 | 0.835814 | 1.35E-56 | -1.69E-46 |
| MS.gene059667 | MS.gene54414 | 0.804346 | 2.26E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene54414 | 0.843648 | 1.23E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene54414 | 0.83824 | 3.24E-57 | -1.69E-46 |
| MS.gene059756 | MS.gene54414 | 0.826046 | 3.36E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene54414 | 0.832353 | 9.92E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene54414 | 0.819023 | 1.44E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene54414 | 0.808844 | 2.54E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene54414 | 0.825044 | 5.81E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene54414 | 0.863192 | 2.97E-64 | -1.69E-46 |
| MS.gene06077 | MS.gene54414 | 0.824642 | 7.23E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene54414 | 0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene54414 | 0.813287 | 2.76E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene54414 | 0.841903 | 3.58E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCTCCTTTCTTTGGTTT+TGG | 0.098567 | 7.4:+92962780 | None:intergenic |
| ACTACTGTCTCTCCTTTCTT+TGG | 0.230123 | 7.4:+92962774 | None:intergenic |
| GATTCGGTTTCTACGTAGTC+TGG | 0.296521 | 7.4:+92962921 | None:intergenic |
| ACCGAGAATGTTGTAGGTCT+TGG | 0.306682 | 7.4:+92961036 | None:intergenic |
| CTGTTGCAGGCATGTCTCTC+GGG | 0.313157 | 7.4:-92961582 | MS.gene54414:CDS |
| GGCTACACCATAGGTTATTA+TGG | 0.314573 | 7.4:-92962443 | MS.gene54414:CDS |
| CAAGTTCCATTCAGGTAGAT+TGG | 0.341541 | 7.4:-92962469 | MS.gene54414:intron |
| CGAATCTGGACTCCAGTATA+AGG | 0.349702 | 7.4:-92962904 | MS.gene54414:intron |
| GCGCTTAGAGGGAAGGATTA+TGG | 0.359617 | 7.4:-92962963 | None:intergenic |
| CCTGAGAGTGATTATAATAA+AGG | 0.373753 | 7.4:-92961063 | MS.gene54414:CDS |
| CTCTCAGGATATCCAAGTTC+TGG | 0.374321 | 7.4:+92961078 | None:intergenic |
| GCTGTTGCAGGCATGTCTCT+CGG | 0.418797 | 7.4:-92961583 | MS.gene54414:CDS |
| CAGGACTTGCGACCCGGAAA+TGG | 0.420506 | 7.4:-92962804 | MS.gene54414:CDS |
| CGTGCTGCATCACCTTATAC+TGG | 0.421611 | 7.4:+92962892 | None:intergenic |
| AAGTTCCATTCAGGTAGATT+GGG | 0.421771 | 7.4:-92962468 | MS.gene54414:intron |
| CCGAGAATGTTGTAGGTCTT+GGG | 0.424007 | 7.4:+92961037 | None:intergenic |
| GACTACGTAGAAACCGAATC+TGG | 0.424093 | 7.4:-92962918 | MS.gene54414:CDS |
| ACTCTTACCGAGAATGTTGT+AGG | 0.441297 | 7.4:+92961030 | None:intergenic |
| CTTATACTGGAGTCCAGATT+CGG | 0.447520 | 7.4:+92962905 | None:intergenic |
| CCCAAGACCTACAACATTCT+CGG | 0.450933 | 7.4:-92961037 | MS.gene54414:intron |
| AAATATGCAGGGTGATGATA+AGG | 0.476575 | 7.4:-92962290 | MS.gene54414:intron |
| TTTACAGGGCCAACGAGCCT+TGG | 0.477434 | 7.4:-92960942 | MS.gene54414:intron |
| CCTTTATTATAATCACTCTC+AGG | 0.484019 | 7.4:+92961063 | None:intergenic |
| AACAAAAGGCGGTTCCTTCG+AGG | 0.510702 | 7.4:-92962396 | MS.gene54414:intron |
| ATAATTGTACCACCAGAACT+TGG | 0.512580 | 7.4:-92961090 | MS.gene54414:CDS |
| TGTTGCAGGCATGTCTCTCG+GGG | 0.531908 | 7.4:-92961581 | MS.gene54414:CDS |
| GCAACAGCCTCTTCAAAAGC+AGG | 0.542551 | 7.4:+92961598 | None:intergenic |
| GAAGCCCGGAATAAAACAAA+AGG | 0.543558 | 7.4:-92962410 | MS.gene54414:CDS |
| TATGCGACCATAATAACCTA+TGG | 0.545221 | 7.4:+92962436 | None:intergenic |
| AAATTGCAGGACTTGCGACC+CGG | 0.549601 | 7.4:-92962810 | MS.gene54414:intron |
| GAGTCTTGTCTATCAACCCT+TGG | 0.550697 | 7.4:+92960903 | None:intergenic |
| ATGGTCGCATATTTGAAGCC+CGG | 0.550903 | 7.4:-92962424 | MS.gene54414:CDS |
| AATGGCCCAAAACCAAAGAA+AGG | 0.553989 | 7.4:-92962786 | MS.gene54414:CDS |
| GATTGGGATGGCTACACCAT+AGG | 0.554754 | 7.4:-92962452 | MS.gene54414:CDS |
| ATTCGGTTTCTACGTAGTCT+GGG | 0.563402 | 7.4:+92962922 | None:intergenic |
| GTTCCTTAGCACAAAATCCA+AGG | 0.568528 | 7.4:+92960925 | None:intergenic |
| AGTGCCTGCGCTTAGAGGGA+AGG | 0.581188 | 7.4:-92962970 | None:intergenic |
| TCCATTCAGGTAGATTGGGA+TGG | 0.591083 | 7.4:-92962464 | MS.gene54414:intron |
| GCACAAAATCCAAGGCTCGT+TGG | 0.605057 | 7.4:+92960933 | None:intergenic |
| GAGAGTGATTATAATAAAGG+TGG | 0.627466 | 7.4:-92961060 | MS.gene54414:CDS |
| TCAGGATATCCAAGTTCTGG+TGG | 0.630805 | 7.4:+92961081 | None:intergenic |
| CAAAACATTCAATACCTCGA+AGG | 0.640541 | 7.4:+92962382 | None:intergenic |
| GCCCGGAATAAAACAAAAGG+CGG | 0.648713 | 7.4:-92962407 | MS.gene54414:CDS |
| AAAGAAAGGAGAGACAGTAG+TGG | 0.691301 | 7.4:-92962772 | MS.gene54414:intron |
| GTTGCAGGCATGTCTCTCGG+GGG | 0.694566 | 7.4:-92961580 | MS.gene54414:CDS |
| ATTCAAAGTAGGATCGCACG+AGG | 0.729797 | 7.4:-92962257 | MS.gene54414:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCCTTAAAAAATTTAATA+TGG | - | chr7.4:92962607-92962626 | MS.gene54414:intron | 10.0% |
| !! | AAATTATAAGTGATATAACA+TGG | - | chr7.4:92961909-92961928 | MS.gene54414:intron | 15.0% |
| !! | ATTTGAAAAACAACAAAATA+AGG | + | chr7.4:92961511-92961530 | None:intergenic | 15.0% |
| !! | CAGTATAATAAAATAAATTC+AGG | + | chr7.4:92962406-92962425 | None:intergenic | 15.0% |
| !!! | CAACCATATTAAATTTTTTA+AGG | + | chr7.4:92962613-92962632 | None:intergenic | 15.0% |
| !!! | GTTAATTTATTTTATCTAGA+GGG | - | chr7.4:92961789-92961808 | MS.gene54414:intron | 15.0% |
| !!! | TGTTAATTTATTTTATCTAG+AGG | - | chr7.4:92961788-92961807 | MS.gene54414:intron | 15.0% |
| !! | ATAAATTCTTACTCTTGATT+TGG | - | chr7.4:92962434-92962453 | MS.gene54414:CDS | 20.0% |
| !! | TAAATTCTTACTCTTGATTT+GGG | - | chr7.4:92962435-92962454 | MS.gene54414:CDS | 20.0% |
| !! | TAGTAGTATTAATAAATTGC+AGG | - | chr7.4:92960994-92961013 | MS.gene54414:intron | 20.0% |
| !! | TTATAATTTCGTTATAGAAC+AGG | + | chr7.4:92961898-92961917 | None:intergenic | 20.0% |
| !! | TTTAATATGGTTGAAAAGTA+AGG | - | chr7.4:92962620-92962639 | MS.gene54414:intron | 20.0% |
| !!! | AATTTTAATTACGGAAATTC+AGG | + | chr7.4:92962477-92962496 | None:intergenic | 20.0% |
| !!! | ATACTGATTCTAAATCAAAT+TGG | - | chr7.4:92961156-92961175 | MS.gene54414:intron | 20.0% |
| !!! | ATTTTAATTACGGAAATTCA+GGG | + | chr7.4:92962476-92962495 | None:intergenic | 20.0% |
| !!! | CTATTGATTTTATAGTCAAT+TGG | - | chr7.4:92961089-92961108 | MS.gene54414:CDS | 20.0% |
| ! | AAAGATCCTATTGAAATTGA+AGG | + | chr7.4:92961620-92961639 | None:intergenic | 25.0% |
| ! | AATTAAAATTGTCAATCGCT+GGG | - | chr7.4:92962487-92962506 | MS.gene54414:intron | 25.0% |
| ! | AATTTGAGTGCTTAATATGT+TGG | + | chr7.4:92962123-92962142 | None:intergenic | 25.0% |
| ! | AGAAACTGTAATTCAGTAAA+TGG | + | chr7.4:92962345-92962364 | None:intergenic | 25.0% |
| ! | AGAGTAAGAATTTATAGAAG+TGG | + | chr7.4:92962429-92962448 | None:intergenic | 25.0% |
| ! | ATAGTTCCTTCAATTTCAAT+AGG | - | chr7.4:92961611-92961630 | MS.gene54414:intron | 25.0% |
| ! | ATATAAAACTGAACCACAAA+GGG | + | chr7.4:92961819-92961838 | None:intergenic | 25.0% |
| ! | ATATTAATCATTACATGACG+AGG | + | chr7.4:92961593-92961612 | None:intergenic | 25.0% |
| ! | ATCAATTCAAACTTTGGATT+TGG | - | chr7.4:92962365-92962384 | MS.gene54414:intron | 25.0% |
| ! | ATGTACTATAAAGAGATTGA+TGG | - | chr7.4:92962662-92962681 | MS.gene54414:intron | 25.0% |
| ! | GTTTCTATCAATTCAAACTT+TGG | - | chr7.4:92962359-92962378 | MS.gene54414:intron | 25.0% |
| ! | TAATTAAAATTGTCAATCGC+TGG | - | chr7.4:92962486-92962505 | MS.gene54414:intron | 25.0% |
| ! | TATATAAAACTGAACCACAA+AGG | + | chr7.4:92961820-92961839 | None:intergenic | 25.0% |
| ! | TCAATTCAAACTTTGGATTT+GGG | - | chr7.4:92962366-92962385 | MS.gene54414:intron | 25.0% |
| ! | TGAAGATTATTCCAAATTGA+AGG | - | chr7.4:92962958-92962977 | MS.gene54414:CDS | 25.0% |
| !! | AAATTCTTACTCTTGATTTG+GGG | - | chr7.4:92962436-92962455 | MS.gene54414:CDS | 25.0% |
| !! | CAATGTGAATATGTTTTACA+GGG | - | chr7.4:92962861-92962880 | MS.gene54414:intron | 25.0% |
| !! | TTCAATAGGATCTTTTCTAT+AGG | - | chr7.4:92961625-92961644 | MS.gene54414:intron | 25.0% |
| !!! | GACTTTTTCAAATTCAAAGT+AGG | - | chr7.4:92961549-92961568 | MS.gene54414:intron | 25.0% |
| !!! | GCGATTGACAATTTTAATTA+CGG | + | chr7.4:92962486-92962505 | None:intergenic | 25.0% |
| !!! | TCTTTGAAATGAGTTTTGAT+GGG | - | chr7.4:92961237-92961256 | MS.gene54414:intron | 25.0% |
| !!! | TGTTGTTTTTCAAATATGCA+GGG | - | chr7.4:92961516-92961535 | MS.gene54414:intron | 25.0% |
| !!! | TTCTTTGAAATGAGTTTTGA+TGG | - | chr7.4:92961236-92961255 | MS.gene54414:intron | 25.0% |
| !!! | TTGTTGTTTTTCAAATATGC+AGG | - | chr7.4:92961515-92961534 | MS.gene54414:intron | 25.0% |
| AAGTAAGGCAAATGTATGTT+TGG | - | chr7.4:92962635-92962654 | MS.gene54414:intron | 30.0% | |
| AAGTAATGTTGAATGCAGTA+GGG | - | chr7.4:92961717-92961736 | MS.gene54414:intron | 30.0% | |
| AATTCAGTAAATGGCATGAA+AGG | + | chr7.4:92962336-92962355 | None:intergenic | 30.0% | |
| AGAGCGCAAAAGAAAAATTT+AGG | + | chr7.4:92961190-92961209 | None:intergenic | 30.0% | |
| AGTAAGGCAAATGTATGTTT+GGG | - | chr7.4:92962636-92962655 | MS.gene54414:intron | 30.0% | |
| ATGTTCAGAAATAATTCCCT+AGG | + | chr7.4:92961283-92961302 | None:intergenic | 30.0% | |
| ATTTGACAACTTTACTCCTA+GGG | - | chr7.4:92961264-92961283 | MS.gene54414:intron | 30.0% | |
| CCTGAGAGTGATTATAATAA+AGG | - | chr7.4:92962754-92962773 | MS.gene54414:intron | 30.0% | |
| CCTTTATTATAATCACTCTC+AGG | + | chr7.4:92962757-92962776 | None:intergenic | 30.0% | |
| GAGAGTGATTATAATAAAGG+TGG | - | chr7.4:92962757-92962776 | MS.gene54414:intron | 30.0% | |
| ! | GCAATGTGAATATGTTTTAC+AGG | - | chr7.4:92962860-92962879 | MS.gene54414:intron | 30.0% |
| ! | TTTTCTATAGGTCTTGATGT+CGG | - | chr7.4:92961637-92961656 | MS.gene54414:intron | 30.0% |
| !!! | CAAATTATGCCCTTATTTTC+TGG | - | chr7.4:92962137-92962156 | MS.gene54414:intron | 30.0% |
| !!! | TAACATGGTTTTTTTGAGTG+AGG | - | chr7.4:92961924-92961943 | MS.gene54414:intron | 30.0% |
| AAATATGCAGGGTGATGATA+AGG | - | chr7.4:92961527-92961546 | MS.gene54414:intron | 35.0% | |
| AAGTCCTACTTGGTTATACT+AGG | - | chr7.4:92961752-92961771 | MS.gene54414:intron | 35.0% | |
| AAGTTCCATTCAGGTAGATT+GGG | - | chr7.4:92961349-92961368 | MS.gene54414:intron | 35.0% | |
| ACTATGTTTATCAGTGATGC+AGG | - | chr7.4:92962704-92962723 | MS.gene54414:intron | 35.0% | |
| AGTTTAGTCCTAATCCCAAA+GGG | + | chr7.4:92961968-92961987 | None:intergenic | 35.0% | |
| ATAATTGTACCACCAGAACT+TGG | - | chr7.4:92962727-92962746 | MS.gene54414:intron | 35.0% | |
| ATATAGCTAACTTCACCTAG+CGG | + | chr7.4:92962567-92962586 | None:intergenic | 35.0% | |
| ATCTACATAGCAGACATTCT+AGG | - | chr7.4:92961213-92961232 | MS.gene54414:intron | 35.0% | |
| ATGCAGACTCCAGAAAATAA+GGG | + | chr7.4:92962149-92962168 | None:intergenic | 35.0% | |
| CAAAACATTCAATACCTCGA+AGG | + | chr7.4:92961438-92961457 | None:intergenic | 35.0% | |
| CAAGTAATGTTGAATGCAGT+AGG | - | chr7.4:92961716-92961735 | MS.gene54414:intron | 35.0% | |
| CTACTGCATTCAACATTACT+TGG | + | chr7.4:92961718-92961737 | None:intergenic | 35.0% | |
| GAATAAGGATAAGTCCTACT+TGG | - | chr7.4:92961742-92961761 | MS.gene54414:intron | 35.0% | |
| GAATCCTAGTATAACCAAGT+AGG | + | chr7.4:92961759-92961778 | None:intergenic | 35.0% | |
| GATTTGACAACTTTACTCCT+AGG | - | chr7.4:92961263-92961282 | MS.gene54414:intron | 35.0% | |
| TATGCGACCATAATAACCTA+TGG | + | chr7.4:92961384-92961403 | None:intergenic | 35.0% | |
| ! | ATTTTGTGCTAAGGAACCAA+GGG | - | chr7.4:92962898-92962917 | MS.gene54414:intron | 35.0% |
| ! | TATTAAGCATGTGCTACTGT+TGG | - | chr7.4:92961843-92961862 | MS.gene54414:intron | 35.0% |
| ! | TTCATGTGCTTTGAATGTTC+AGG | - | chr7.4:92962191-92962210 | MS.gene54414:intron | 35.0% |
| !!! | AACCGCCTTTTGTTTTATTC+CGG | + | chr7.4:92961415-92961434 | None:intergenic | 35.0% |
| !!! | TCTCTCCTTTCTTTGGTTTT+GGG | + | chr7.4:92961039-92961058 | None:intergenic | 35.0% |
| AAAGAAAGGAGAGACAGTAG+TGG | - | chr7.4:92961045-92961064 | MS.gene54414:CDS | 40.0% | |
| AACTTCACCTAGCGGAAAAA+GGG | + | chr7.4:92962559-92962578 | None:intergenic | 40.0% | |
| AATGGCCCAAAACCAAAGAA+AGG | - | chr7.4:92961031-92961050 | MS.gene54414:intron | 40.0% | |
| ACTACTGTCTCTCCTTTCTT+TGG | + | chr7.4:92961046-92961065 | None:intergenic | 40.0% | |
| ACTCTTACCGAGAATGTTGT+AGG | + | chr7.4:92962790-92962809 | None:intergenic | 40.0% | |
| ATTCGGTTTCTACGTAGTCT+GGG | + | chr7.4:92960898-92960917 | None:intergenic | 40.0% | |
| CAAGTTCCATTCAGGTAGAT+TGG | - | chr7.4:92961348-92961367 | MS.gene54414:intron | 40.0% | |
| CTATCTAGACATTGTCGAAG+TGG | - | chr7.4:92961471-92961490 | MS.gene54414:intron | 40.0% | |
| CTTATACTGGAGTCCAGATT+CGG | + | chr7.4:92960915-92960934 | None:intergenic | 40.0% | |
| GAAGCCCGGAATAAAACAAA+AGG | - | chr7.4:92961407-92961426 | MS.gene54414:intron | 40.0% | |
| GAATGCAGTAGGGTTGAATA+AGG | - | chr7.4:92961727-92961746 | MS.gene54414:intron | 40.0% | |
| GAGTTTAGTCCTAATCCCAA+AGG | + | chr7.4:92961969-92961988 | None:intergenic | 40.0% | |
| GATGCAGACTCCAGAAAATA+AGG | + | chr7.4:92962150-92962169 | None:intergenic | 40.0% | |
| GCTAGGTGAAGTTAGCTATA+TGG | - | chr7.4:92962566-92962585 | MS.gene54414:intron | 40.0% | |
| GGCTACACCATAGGTTATTA+TGG | - | chr7.4:92961374-92961393 | MS.gene54414:intron | 40.0% | |
| GTAAATGGCATGAAAGGACT+TGG | + | chr7.4:92962330-92962349 | None:intergenic | 40.0% | |
| GTTCCTTAGCACAAAATCCA+AGG | + | chr7.4:92962895-92962914 | None:intergenic | 40.0% | |
| TAACTTCACCTAGCGGAAAA+AGG | + | chr7.4:92962560-92962579 | None:intergenic | 40.0% | |
| TCGACATCCTTCGTTAGTAT+TGG | - | chr7.4:92961866-92961885 | MS.gene54414:intron | 40.0% | |
| ! | AAGAGCTTCAAGTTCCATTC+AGG | - | chr7.4:92961340-92961359 | MS.gene54414:intron | 40.0% |
| ! | GATTTTGTGCTAAGGAACCA+AGG | - | chr7.4:92962897-92962916 | MS.gene54414:intron | 40.0% |
| ! | TATGAAACCCTTTTTCCGCT+AGG | - | chr7.4:92962549-92962568 | MS.gene54414:intron | 40.0% |
| !! | AGTTGATGAACACTAGTGAC+AGG | + | chr7.4:92962818-92962837 | None:intergenic | 40.0% |
| !! | CATCCTTCGTTAGTATTGGT+TGG | - | chr7.4:92961870-92961889 | MS.gene54414:intron | 40.0% |
| !! | GGTAATACCTGCTTTTGAAG+AGG | - | chr7.4:92962212-92962231 | MS.gene54414:intron | 40.0% |
| !! | GTCTCTCCTTTCTTTGGTTT+TGG | + | chr7.4:92961040-92961059 | None:intergenic | 40.0% |
| !!! | ACCGCCTTTTGTTTTATTCC+GGG | + | chr7.4:92961414-92961433 | None:intergenic | 40.0% |
| AAACCCACGATAACACCTTG+TGG | + | chr7.4:92962024-92962043 | None:intergenic | 45.0% | |
| ACCGAGAATGTTGTAGGTCT+TGG | + | chr7.4:92962784-92962803 | None:intergenic | 45.0% | |
| ACGATAACACCTTGTGGCAA+GGG | + | chr7.4:92962018-92962037 | None:intergenic | 45.0% | |
| ATTCAAAGTAGGATCGCACG+AGG | - | chr7.4:92961560-92961579 | MS.gene54414:intron | 45.0% | |
| CCCAAGACCTACAACATTCT+CGG | - | chr7.4:92962780-92962799 | MS.gene54414:CDS | 45.0% | |
| CCGAGAATGTTGTAGGTCTT+GGG | + | chr7.4:92962783-92962802 | None:intergenic | 45.0% | |
| CGAATCTGGACTCCAGTATA+AGG | - | chr7.4:92960913-92960932 | MS.gene54414:CDS | 45.0% | |
| CTCTCAGGATATCCAAGTTC+TGG | + | chr7.4:92962742-92962761 | None:intergenic | 45.0% | |
| GACTACGTAGAAACCGAATC+TGG | - | chr7.4:92960899-92960918 | MS.gene54414:CDS | 45.0% | |
| GAGCCAACCAATACTAACGA+AGG | + | chr7.4:92961876-92961895 | None:intergenic | 45.0% | |
| GCCCGGAATAAAACAAAAGG+CGG | - | chr7.4:92961410-92961429 | MS.gene54414:intron | 45.0% | |
| TCCATTCAGGTAGATTGGGA+TGG | - | chr7.4:92961353-92961372 | MS.gene54414:intron | 45.0% | |
| TCTAGAGGGAAAACCCTTTG+TGG | - | chr7.4:92961803-92961822 | MS.gene54414:intron | 45.0% | |
| ! | ATGGTCGCATATTTGAAGCC+CGG | - | chr7.4:92961393-92961412 | MS.gene54414:intron | 45.0% |
| ! | GAGCCTTGGATTTTGTGCTA+AGG | - | chr7.4:92962889-92962908 | MS.gene54414:intron | 45.0% |
| ! | GAGTCTTGTCTATCAACCCT+TGG | + | chr7.4:92962917-92962936 | None:intergenic | 45.0% |
| ! | GATTCGGTTTCTACGTAGTC+TGG | + | chr7.4:92960899-92960918 | None:intergenic | 45.0% |
| ! | TCAGGATATCCAAGTTCTGG+TGG | + | chr7.4:92962739-92962758 | None:intergenic | 45.0% |
| ! | TTGCCACAAGGTGTTATCGT+GGG | - | chr7.4:92962018-92962037 | MS.gene54414:intron | 45.0% |
| !!! | CTTTGGTTTTGGGCCATTTC+CGG | + | chr7.4:92961029-92961048 | None:intergenic | 45.0% |
| !!! | TTTGGTTTTGGGCCATTTCC+GGG | + | chr7.4:92961028-92961047 | None:intergenic | 45.0% |
| AAATTGCAGGACTTGCGACC+CGG | - | chr7.4:92961007-92961026 | MS.gene54414:intron | 50.0% | |
| AACAAAAGGCGGTTCCTTCG+AGG | - | chr7.4:92961421-92961440 | MS.gene54414:intron | 50.0% | |
| ACTTGGACGTAACACAGCTC+AGG | + | chr7.4:92962313-92962332 | None:intergenic | 50.0% | |
| CACGATAACACCTTGTGGCA+AGG | + | chr7.4:92962019-92962038 | None:intergenic | 50.0% | |
| CGTGCTGCATCACCTTATAC+TGG | + | chr7.4:92960928-92960947 | None:intergenic | 50.0% | |
| GAAGAGTCTGAACGCCCTTT+GGG | - | chr7.4:92961951-92961970 | MS.gene54414:intron | 50.0% | |
| GATTGGGATGGCTACACCAT+AGG | - | chr7.4:92961365-92961384 | MS.gene54414:intron | 50.0% | |
| GCAACAGCCTCTTCAAAAGC+AGG | + | chr7.4:92962222-92962241 | None:intergenic | 50.0% | |
| GCACAAAATCCAAGGCTCGT+TGG | + | chr7.4:92962887-92962906 | None:intergenic | 50.0% | |
| GCCATCCCAATCTACCTGAA+TGG | + | chr7.4:92961357-92961376 | None:intergenic | 50.0% | |
| TCGACTTTACCCTTGCCACA+AGG | - | chr7.4:92962006-92962025 | MS.gene54414:intron | 50.0% | |
| TGAAGAGTCTGAACGCCCTT+TGG | - | chr7.4:92961950-92961969 | MS.gene54414:intron | 50.0% | |
| ! | CTTGCCACAAGGTGTTATCG+TGG | - | chr7.4:92962017-92962036 | MS.gene54414:intron | 50.0% |
| !! | GCTTTTGAAGAGGCTGTTGC+AGG | - | chr7.4:92962222-92962241 | MS.gene54414:intron | 50.0% |
| !! | TCTGAACGCCCTTTGGGATT+AGG | - | chr7.4:92961957-92961976 | MS.gene54414:intron | 50.0% |
| CTGTTGCAGGCATGTCTCTC+GGG | - | chr7.4:92962235-92962254 | MS.gene54414:intron | 55.0% | |
| GCTGTTGCAGGCATGTCTCT+CGG | - | chr7.4:92962234-92962253 | MS.gene54414:intron | 55.0% | |
| TGTTGCAGGCATGTCTCTCG+GGG | - | chr7.4:92962236-92962255 | MS.gene54414:intron | 55.0% | |
| TTTACAGGGCCAACGAGCCT+TGG | - | chr7.4:92962875-92962894 | MS.gene54414:intron | 55.0% | |
| CAGGACTTGCGACCCGGAAA+TGG | - | chr7.4:92961013-92961032 | MS.gene54414:intron | 60.0% | |
| GTTGCAGGCATGTCTCTCGG+GGG | - | chr7.4:92962237-92962256 | MS.gene54414:intron | 60.0% | |
| !! | TGTCTCTCGGGGGCATTCGA+AGG | - | chr7.4:92962247-92962266 | MS.gene54414:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 92960862 | 92962977 | 92960862 | ID=MS.gene54414 |
| chr7.4 | mRNA | 92960862 | 92962977 | 92960862 | ID=MS.gene54414.t1;Parent=MS.gene54414 |
| chr7.4 | exon | 92962905 | 92962977 | 92962905 | ID=MS.gene54414.t1.exon1;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92962905 | 92962977 | 92962905 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| chr7.4 | exon | 92962773 | 92962823 | 92962773 | ID=MS.gene54414.t1.exon2;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92962773 | 92962823 | 92962773 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| chr7.4 | exon | 92962397 | 92962477 | 92962397 | ID=MS.gene54414.t1.exon3;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92962397 | 92962477 | 92962397 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| chr7.4 | exon | 92962258 | 92962302 | 92962258 | ID=MS.gene54414.t1.exon4;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92962258 | 92962302 | 92962258 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| chr7.4 | exon | 92961571 | 92961626 | 92961571 | ID=MS.gene54414.t1.exon5;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92961571 | 92961626 | 92961571 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| chr7.4 | exon | 92961038 | 92961113 | 92961038 | ID=MS.gene54414.t1.exon6;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92961038 | 92961113 | 92961038 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| chr7.4 | exon | 92960862 | 92960957 | 92960862 | ID=MS.gene54414.t1.exon7;Parent=MS.gene54414.t1 |
| chr7.4 | CDS | 92960862 | 92960957 | 92960862 | ID=cds.MS.gene54414.t1;Parent=MS.gene54414.t1 |
| Gene Sequence |
| Protein sequence |
