Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60238.t1 | XP_003588686.2 | 96.3 | 163 | 5 | 1 | 1 | 162 | 1 | 163 | 4.10E-85 | 323.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60238.t1 | Q9LU21 | 43.6 | 156 | 73 | 4 | 20 | 161 | 30 | 184 | 7.5e-27 | 121.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60238.t1 | G7I6B2 | 96.3 | 163 | 5 | 1 | 1 | 162 | 1 | 163 | 3.0e-85 | 323.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049351 | MS.gene60238 | 0.827867 | 1.23E-54 | -1.69E-46 |
MS.gene049356 | MS.gene60238 | 0.833249 | 5.94E-56 | -1.69E-46 |
MS.gene049369 | MS.gene60238 | 0.856761 | 2.58E-62 | -1.69E-46 |
MS.gene049427 | MS.gene60238 | 0.835752 | 1.40E-56 | -1.69E-46 |
MS.gene049609 | MS.gene60238 | 0.806781 | 6.96E-50 | -1.69E-46 |
MS.gene049661 | MS.gene60238 | 0.801727 | 7.86E-49 | -1.69E-46 |
MS.gene049758 | MS.gene60238 | 0.808417 | 3.13E-50 | -1.69E-46 |
MS.gene049805 | MS.gene60238 | 0.805213 | 1.49E-49 | -1.69E-46 |
MS.gene050301 | MS.gene60238 | 0.812674 | 3.76E-51 | -1.69E-46 |
MS.gene050397 | MS.gene60238 | 0.827961 | 1.17E-54 | -1.69E-46 |
MS.gene050432 | MS.gene60238 | 0.855344 | 6.72E-62 | -1.69E-46 |
MS.gene050593 | MS.gene60238 | 0.824033 | 1.01E-53 | -1.69E-46 |
MS.gene050670 | MS.gene60238 | 0.827885 | 1.22E-54 | -1.69E-46 |
MS.gene050767 | MS.gene60238 | 0.811954 | 5.41E-51 | -1.69E-46 |
MS.gene050770 | MS.gene60238 | 0.817188 | 3.75E-52 | -1.69E-46 |
MS.gene050772 | MS.gene60238 | 0.811057 | 8.47E-51 | -1.69E-46 |
MS.gene05101 | MS.gene60238 | 0.815721 | 8.00E-52 | -1.69E-46 |
MS.gene05105 | MS.gene60238 | 0.828644 | 8.02E-55 | -1.69E-46 |
MS.gene051228 | MS.gene60238 | 0.840243 | 9.78E-58 | -1.69E-46 |
MS.gene051255 | MS.gene60238 | 0.813295 | 2.75E-51 | -1.69E-46 |
MS.gene051360 | MS.gene60238 | 0.812908 | 3.35E-51 | -1.69E-46 |
MS.gene051387 | MS.gene60238 | 0.814972 | 1.17E-51 | -1.69E-46 |
MS.gene051617 | MS.gene60238 | 0.813617 | 2.34E-51 | -1.69E-46 |
MS.gene051666 | MS.gene60238 | 0.844704 | 6.41E-59 | -1.69E-46 |
MS.gene051692 | MS.gene60238 | 0.851338 | 9.47E-61 | -1.69E-46 |
MS.gene051734 | MS.gene60238 | 0.801068 | 1.07E-48 | -1.69E-46 |
MS.gene051858 | MS.gene60238 | 0.810576 | 1.08E-50 | -1.69E-46 |
MS.gene052078 | MS.gene60238 | 0.824568 | 7.52E-54 | -1.69E-46 |
MS.gene052188 | MS.gene60238 | 0.835021 | 2.14E-56 | -1.69E-46 |
MS.gene052310 | MS.gene60238 | 0.824454 | 8.00E-54 | -1.69E-46 |
MS.gene052322 | MS.gene60238 | 0.847671 | 9.98E-60 | -1.69E-46 |
MS.gene052340 | MS.gene60238 | 0.817542 | 3.12E-52 | -1.69E-46 |
MS.gene052379 | MS.gene60238 | 0.823549 | 1.30E-53 | -1.69E-46 |
MS.gene052481 | MS.gene60238 | 0.82544 | 4.68E-54 | -1.69E-46 |
MS.gene052484 | MS.gene60238 | 0.860669 | 1.76E-63 | -1.69E-46 |
MS.gene052485 | MS.gene60238 | 0.846011 | 2.84E-59 | -1.69E-46 |
MS.gene052508 | MS.gene60238 | 0.852028 | 6.04E-61 | -1.69E-46 |
MS.gene052510 | MS.gene60238 | 0.838424 | 2.90E-57 | -1.69E-46 |
MS.gene052777 | MS.gene60238 | -0.808426 | 3.11E-50 | -1.69E-46 |
MS.gene052870 | MS.gene60238 | 0.824462 | 7.97E-54 | -1.69E-46 |
MS.gene052872 | MS.gene60238 | 0.815958 | 7.08E-52 | -1.69E-46 |
MS.gene053103 | MS.gene60238 | 0.807523 | 4.85E-50 | -1.69E-46 |
MS.gene053104 | MS.gene60238 | 0.83925 | 1.77E-57 | -1.69E-46 |
MS.gene053107 | MS.gene60238 | 0.833922 | 4.04E-56 | -1.69E-46 |
MS.gene053207 | MS.gene60238 | 0.821156 | 4.69E-53 | -1.69E-46 |
MS.gene053209 | MS.gene60238 | 0.848962 | 4.39E-60 | -1.69E-46 |
MS.gene053322 | MS.gene60238 | 0.813089 | 3.05E-51 | -1.69E-46 |
MS.gene053384 | MS.gene60238 | 0.823516 | 1.33E-53 | -1.69E-46 |
MS.gene053449 | MS.gene60238 | 0.863723 | 2.03E-64 | -1.69E-46 |
MS.gene053813 | MS.gene60238 | 0.813338 | 2.69E-51 | -1.69E-46 |
MS.gene053916 | MS.gene60238 | 0.804922 | 1.71E-49 | -1.69E-46 |
MS.gene054123 | MS.gene60238 | 0.824158 | 9.39E-54 | -1.69E-46 |
MS.gene054376 | MS.gene60238 | 0.817734 | 2.83E-52 | -1.69E-46 |
MS.gene054600 | MS.gene60238 | 0.805607 | 1.23E-49 | -1.69E-46 |
MS.gene054642 | MS.gene60238 | 0.803514 | 3.36E-49 | -1.69E-46 |
MS.gene054804 | MS.gene60238 | 0.800984 | 1.11E-48 | -1.69E-46 |
MS.gene054955 | MS.gene60238 | 0.821319 | 4.30E-53 | -1.69E-46 |
MS.gene05505 | MS.gene60238 | 0.823295 | 1.50E-53 | -1.69E-46 |
MS.gene055116 | MS.gene60238 | 0.815395 | 9.45E-52 | -1.69E-46 |
MS.gene055206 | MS.gene60238 | 0.826901 | 2.10E-54 | -1.69E-46 |
MS.gene055224 | MS.gene60238 | 0.803248 | 3.82E-49 | -1.69E-46 |
MS.gene055277 | MS.gene60238 | 0.844291 | 8.28E-59 | -1.69E-46 |
MS.gene055390 | MS.gene60238 | 0.814155 | 1.78E-51 | -1.69E-46 |
MS.gene055397 | MS.gene60238 | 0.814273 | 1.68E-51 | -1.69E-46 |
MS.gene055499 | MS.gene60238 | 0.805683 | 1.19E-49 | -1.69E-46 |
MS.gene055577 | MS.gene60238 | 0.808 | 3.84E-50 | -1.69E-46 |
MS.gene055722 | MS.gene60238 | 0.828313 | 9.64E-55 | -1.69E-46 |
MS.gene05592 | MS.gene60238 | 0.872801 | 2.40E-67 | -1.69E-46 |
MS.gene055941 | MS.gene60238 | 0.820344 | 7.21E-53 | -1.69E-46 |
MS.gene056374 | MS.gene60238 | 0.805473 | 1.31E-49 | -1.69E-46 |
MS.gene056407 | MS.gene60238 | 0.817505 | 3.19E-52 | -1.69E-46 |
MS.gene056410 | MS.gene60238 | 0.855108 | 7.87E-62 | -1.69E-46 |
MS.gene056511 | MS.gene60238 | 0.815543 | 8.76E-52 | -1.69E-46 |
MS.gene056609 | MS.gene60238 | 0.851966 | 6.29E-61 | -1.69E-46 |
MS.gene05664 | MS.gene60238 | 0.820988 | 5.13E-53 | -1.69E-46 |
MS.gene05666 | MS.gene60238 | 0.821757 | 3.41E-53 | -1.69E-46 |
MS.gene056796 | MS.gene60238 | 0.857922 | 1.17E-62 | -1.69E-46 |
MS.gene056897 | MS.gene60238 | 0.854046 | 1.60E-61 | -1.69E-46 |
MS.gene056947 | MS.gene60238 | 0.801374 | 9.28E-49 | -1.69E-46 |
MS.gene057011 | MS.gene60238 | 0.802355 | 5.84E-49 | -1.69E-46 |
MS.gene057124 | MS.gene60238 | 0.841225 | 5.41E-58 | -1.69E-46 |
MS.gene057129 | MS.gene60238 | 0.831688 | 1.45E-55 | -1.69E-46 |
MS.gene057295 | MS.gene60238 | 0.814251 | 1.69E-51 | -1.69E-46 |
MS.gene057331 | MS.gene60238 | 0.852159 | 5.54E-61 | -1.69E-46 |
MS.gene05735 | MS.gene60238 | 0.829274 | 5.64E-55 | -1.69E-46 |
MS.gene057416 | MS.gene60238 | 0.812601 | 3.91E-51 | -1.69E-46 |
MS.gene057448 | MS.gene60238 | 0.812887 | 3.38E-51 | -1.69E-46 |
MS.gene057449 | MS.gene60238 | 0.81519 | 1.05E-51 | -1.69E-46 |
MS.gene057450 | MS.gene60238 | 0.818661 | 1.74E-52 | -1.69E-46 |
MS.gene057537 | MS.gene60238 | 0.805454 | 1.32E-49 | -1.69E-46 |
MS.gene057926 | MS.gene60238 | 0.868683 | 5.44E-66 | -1.69E-46 |
MS.gene057927 | MS.gene60238 | 0.830366 | 3.06E-55 | -1.69E-46 |
MS.gene058002 | MS.gene60238 | 0.805937 | 1.05E-49 | -1.69E-46 |
MS.gene058006 | MS.gene60238 | 0.869818 | 2.33E-66 | -1.69E-46 |
MS.gene058019 | MS.gene60238 | 0.801569 | 8.47E-49 | -1.69E-46 |
MS.gene05806 | MS.gene60238 | 0.808372 | 3.20E-50 | -1.69E-46 |
MS.gene058082 | MS.gene60238 | 0.844705 | 6.41E-59 | -1.69E-46 |
MS.gene05811 | MS.gene60238 | 0.827372 | 1.62E-54 | -1.69E-46 |
MS.gene058293 | MS.gene60238 | 0.826108 | 3.25E-54 | -1.69E-46 |
MS.gene058323 | MS.gene60238 | 0.830206 | 3.35E-55 | -1.69E-46 |
MS.gene058365 | MS.gene60238 | 0.84292 | 1.93E-58 | -1.69E-46 |
MS.gene05842 | MS.gene60238 | 0.810479 | 1.13E-50 | -1.69E-46 |
MS.gene058660 | MS.gene60238 | 0.835039 | 2.12E-56 | -1.69E-46 |
MS.gene058787 | MS.gene60238 | 0.832593 | 8.65E-56 | -1.69E-46 |
MS.gene058928 | MS.gene60238 | 0.806851 | 6.73E-50 | -1.69E-46 |
MS.gene058948 | MS.gene60238 | 0.813426 | 2.58E-51 | -1.69E-46 |
MS.gene058993 | MS.gene60238 | 0.811939 | 5.45E-51 | -1.69E-46 |
MS.gene05907 | MS.gene60238 | 0.828549 | 8.45E-55 | -1.69E-46 |
MS.gene05934 | MS.gene60238 | 0.818818 | 1.61E-52 | -1.69E-46 |
MS.gene059366 | MS.gene60238 | 0.80625 | 9.01E-50 | -1.69E-46 |
MS.gene059536 | MS.gene60238 | 0.81934 | 1.22E-52 | -1.69E-46 |
MS.gene05959 | MS.gene60238 | 0.820854 | 5.50E-53 | -1.69E-46 |
MS.gene059674 | MS.gene60238 | 0.802538 | 5.35E-49 | -1.69E-46 |
MS.gene059676 | MS.gene60238 | 0.847251 | 1.30E-59 | -1.69E-46 |
MS.gene059688 | MS.gene60238 | 0.838122 | 3.47E-57 | -1.69E-46 |
MS.gene059692 | MS.gene60238 | 0.840913 | 6.53E-58 | -1.69E-46 |
MS.gene059695 | MS.gene60238 | 0.842248 | 2.90E-58 | -1.69E-46 |
MS.gene059708 | MS.gene60238 | 0.838332 | 3.06E-57 | -1.69E-46 |
MS.gene059711 | MS.gene60238 | 0.803856 | 2.85E-49 | -1.69E-46 |
MS.gene059807 | MS.gene60238 | 0.805763 | 1.14E-49 | -1.69E-46 |
MS.gene05986 | MS.gene60238 | 0.806671 | 7.35E-50 | -1.69E-46 |
MS.gene059902 | MS.gene60238 | 0.801984 | 6.96E-49 | -1.69E-46 |
MS.gene059960 | MS.gene60238 | 0.828716 | 7.70E-55 | -1.69E-46 |
MS.gene060193 | MS.gene60238 | 0.859358 | 4.37E-63 | -1.69E-46 |
MS.gene06037 | MS.gene60238 | 0.81392 | 2.00E-51 | -1.69E-46 |
MS.gene060403 | MS.gene60238 | 0.846567 | 2.00E-59 | -1.69E-46 |
MS.gene060569 | MS.gene60238 | 0.808391 | 3.17E-50 | -1.69E-46 |
MS.gene060804 | MS.gene60238 | 0.873178 | 1.80E-67 | -1.69E-46 |
MS.gene060818 | MS.gene60238 | 0.852212 | 5.35E-61 | -1.69E-46 |
MS.gene060835 | MS.gene60238 | 0.806222 | 9.13E-50 | -1.69E-46 |
MS.gene060837 | MS.gene60238 | 0.855927 | 4.54E-62 | -1.69E-46 |
MS.gene06092 | MS.gene60238 | 0.811553 | 6.61E-51 | -1.69E-46 |
MS.gene060986 | MS.gene60238 | 0.806517 | 7.92E-50 | -1.69E-46 |
MS.gene061041 | MS.gene60238 | 0.837111 | 6.30E-57 | -1.69E-46 |
MS.gene061051 | MS.gene60238 | -0.852633 | 4.06E-61 | -1.69E-46 |
MS.gene061154 | MS.gene60238 | 0.821611 | 3.68E-53 | -1.69E-46 |
MS.gene061200 | MS.gene60238 | 0.834055 | 3.74E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60238.t1 | MTR_1g011510 | 96.319 | 163 | 5 | 1 | 1 | 162 | 1 | 163 | 2.21e-113 | 318 |
MS.gene60238.t1 | MTR_2g101380 | 43.030 | 165 | 84 | 4 | 6 | 161 | 11 | 174 | 2.46e-37 | 127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60238.t1 | AT4G32590 | 84.167 | 120 | 19 | 0 | 43 | 162 | 54 | 173 | 1.02e-62 | 191 |
MS.gene60238.t1 | AT4G32590 | 82.569 | 109 | 19 | 0 | 43 | 151 | 54 | 162 | 1.18e-53 | 168 |
MS.gene60238.t1 | AT4G32590 | 78.409 | 88 | 19 | 0 | 43 | 130 | 54 | 141 | 6.70e-37 | 125 |
MS.gene60238.t1 | AT3G16250 | 43.590 | 156 | 73 | 4 | 20 | 161 | 30 | 184 | 3.85e-35 | 122 |
MS.gene60238.t1 | AT4G32590 | 80.597 | 67 | 13 | 0 | 43 | 109 | 54 | 120 | 2.38e-24 | 92.0 |
MS.gene60238.t1 | AT4G32590 | 75.510 | 49 | 12 | 0 | 43 | 91 | 54 | 102 | 4.47e-21 | 83.2 |
Find 56 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGCCAACCTCCAAGATTC+AGG | 0.247976 | 1.2:+9589173 | None:intergenic |
GACCCATCACCCTCTGGTTT+TGG | 0.288686 | 1.2:+9590820 | None:intergenic |
GAAAATAAATGGTTGGATTC+CGG | 0.304867 | 1.2:+9591006 | None:intergenic |
ATGAACTCCAGCTCTATTTC+CGG | 0.309865 | 1.2:+9590924 | None:intergenic |
TCCGGAGGAGAAGGAGATTC+AGG | 0.327786 | 1.2:+9590942 | None:intergenic |
TCGCCGCCGGGGAAAATAAA+TGG | 0.351768 | 1.2:+9590995 | None:intergenic |
AATGGTTGGATTCCGGTTAC+CGG | 0.353946 | 1.2:+9591013 | None:intergenic |
AGAGGGTGATGGGTCGTTTC+CGG | 0.362222 | 1.2:-9590812 | MS.gene60238:CDS |
GTAAACAGAAACCTGAATCT+TGG | 0.374507 | 1.2:-9589184 | MS.gene60238:intron |
TTACCGGCGGTGAGTGGAAC+TGG | 0.390189 | 1.2:+9591029 | None:intergenic |
AAATAGAGCTGGAGTTCATT+GGG | 0.393000 | 1.2:-9590920 | MS.gene60238:CDS |
GAAATAGAGCTGGAGTTCAT+TGG | 0.409789 | 1.2:-9590921 | MS.gene60238:CDS |
TTGGCTTGTCAAACTATTGT+TGG | 0.412378 | 1.2:-9589158 | MS.gene60238:CDS |
TTCCACTCACCGCCGGTAAC+CGG | 0.413919 | 1.2:-9591025 | MS.gene60238:CDS |
AAGTTGATGAACTGCGGCGG+AGG | 0.442332 | 1.2:-9589946 | MS.gene60238:CDS |
GTTCTGTTGCAGATCATTGA+AGG | 0.445150 | 1.2:-9589676 | MS.gene60238:intron |
TGGCTTGTCAAACTATTGTT+GGG | 0.446620 | 1.2:-9589157 | MS.gene60238:CDS |
AACTGAGTTCGGTCGCCGCC+GGG | 0.457166 | 1.2:+9590983 | None:intergenic |
GCCTGAATCTCCTTCTCCTC+CGG | 0.472889 | 1.2:-9590943 | MS.gene60238:CDS |
GCCACGAAACAAACTGAGTT+CGG | 0.475849 | 1.2:+9590972 | None:intergenic |
TTGATGAACTGCGGCGGAGG+GGG | 0.486976 | 1.2:-9589943 | MS.gene60238:CDS |
TGATATTACTTCTTCCATTG+AGG | 0.490864 | 1.2:+9588262 | None:intergenic |
ACCGAACTCAGTTTGTTTCG+TGG | 0.500054 | 1.2:-9590973 | MS.gene60238:CDS |
AGCTCTATTTCCGGAGGAGA+AGG | 0.500109 | 1.2:+9590933 | None:intergenic |
AGTTGATGAACTGCGGCGGA+GGG | 0.500666 | 1.2:-9589945 | MS.gene60238:CDS |
TTCTCCTCCGGAAATAGAGC+TGG | 0.505143 | 1.2:-9590931 | MS.gene60238:CDS |
AAACTGAGTTCGGTCGCCGC+CGG | 0.506246 | 1.2:+9590982 | None:intergenic |
ATTGCTTTCACTTTATCCAC+CGG | 0.506855 | 1.2:+9590793 | None:intergenic |
CAGCCAAAACCAGAGGGTGA+TGG | 0.518767 | 1.2:-9590823 | MS.gene60238:CDS |
GAAACCTGAATCTTGGAGGT+TGG | 0.519969 | 1.2:-9589177 | MS.gene60238:CDS |
TTCCGGTTACCGGCGGTGAG+TGG | 0.524356 | 1.2:+9591023 | None:intergenic |
TGAACTAAAATATCTTAAGA+AGG | 0.529764 | 1.2:-9589623 | MS.gene60238:intron |
TTGTTCAAAGGATTCCTCAA+TGG | 0.532551 | 1.2:-9588276 | MS.gene60238:CDS |
GTTGCAGATCATTGAAGGAA+AGG | 0.538608 | 1.2:-9589671 | MS.gene60238:intron |
AACAGAAACCTGAATCTTGG+AGG | 0.539774 | 1.2:-9589181 | MS.gene60238:intron |
AGCCAAAACCAGAGGGTGAT+GGG | 0.553792 | 1.2:-9590822 | MS.gene60238:CDS |
GGAAACGACCCATCACCCTC+TGG | 0.569559 | 1.2:+9590814 | None:intergenic |
CGCCGGGGAAAATAAATGGT+TGG | 0.580484 | 1.2:+9590999 | None:intergenic |
TAAGCGGAGAGAAGCTGATG+AGG | 0.586456 | 1.2:-9590771 | MS.gene60238:CDS |
GTTGGGAACAAAGAAAACTC+TGG | 0.588901 | 1.2:-9589140 | MS.gene60238:CDS |
GGGTGATGGGTCGTTTCCGG+TGG | 0.591158 | 1.2:-9590809 | MS.gene60238:CDS |
GTTGATGAACTGCGGCGGAG+GGG | 0.596821 | 1.2:-9589944 | MS.gene60238:CDS |
ACTGAGTTCGGTCGCCGCCG+GGG | 0.605244 | 1.2:+9590984 | None:intergenic |
ACACCAGTTCCACTCACCGC+CGG | 0.614691 | 1.2:-9591032 | MS.gene60238:CDS |
TTGATTGCAGCCAAAACCAG+AGG | 0.640341 | 1.2:-9590830 | MS.gene60238:intron |
TGATTGCAGCCAAAACCAGA+GGG | 0.640990 | 1.2:-9590829 | MS.gene60238:intron |
AACTCCAGCTCTATTTCCGG+AGG | 0.644295 | 1.2:+9590927 | None:intergenic |
GAACAAAGAAAACTCTGGCA+AGG | 0.650067 | 1.2:-9589135 | MS.gene60238:intron |
CTGCGGAACTTGCATAGTCG+AGG | 0.652849 | 1.2:-9589917 | MS.gene60238:intron |
GGTTGGATTCCGGTTACCGG+CGG | 0.656174 | 1.2:+9591016 | None:intergenic |
GCTGATGAGGAGCATCATGT+CGG | 0.664064 | 1.2:-9590758 | MS.gene60238:CDS |
GGAAAGTTGATGAACTGCGG+CGG | 0.675156 | 1.2:-9589949 | MS.gene60238:CDS |
GATAAAGTGAAAGCAATAAG+CGG | 0.697309 | 1.2:-9590787 | MS.gene60238:CDS |
CAGGGAAAGTTGATGAACTG+CGG | 0.704168 | 1.2:-9589952 | MS.gene60238:CDS |
AATAGAGCTGGAGTTCATTG+GGG | 0.704244 | 1.2:-9590919 | MS.gene60238:intron |
TGGTATGATACATACATACG+TGG | 0.709659 | 1.2:+9590714 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTTCTTCTATAAAAAAA+AGG | - | chr1.2:9588921-9588940 | MS.gene60238:intron | 10.0% |
!! | ATTAATTAATTTCAAAATCT+AGG | + | chr1.2:9590100-9590119 | None:intergenic | 10.0% |
!! | TATAAAATATATTCATTTCT+TGG | + | chr1.2:9589560-9589579 | None:intergenic | 10.0% |
!! | TATAATAATAACAATAAGAA+TGG | + | chr1.2:9589475-9589494 | None:intergenic | 10.0% |
!!! | AACAATTTTCAATATATATA+TGG | - | chr1.2:9590673-9590692 | MS.gene60238:intron | 10.0% |
!!! | TAAATTTTTAGATTAATCAT+CGG | - | chr1.2:9589159-9589178 | MS.gene60238:CDS | 10.0% |
!! | AAAATGAACATTTCATATTA+TGG | - | chr1.2:9589220-9589239 | MS.gene60238:intron | 15.0% |
!! | AAACTTCTTATATCATATAT+AGG | + | chr1.2:9589914-9589933 | None:intergenic | 15.0% |
!!! | TCATTTTTTAACCAAATTAT+TGG | + | chr1.2:9589207-9589226 | None:intergenic | 15.0% |
!!! | TTCATTTATATTTTCTATGA+TGG | - | chr1.2:9591013-9591032 | MS.gene60238:CDS | 15.0% |
!!! | TTTTACTATGACTATTATTA+AGG | + | chr1.2:9588864-9588883 | None:intergenic | 15.0% |
!! | AAACAGACTTAATTCATATA+AGG | + | chr1.2:9590803-9590822 | None:intergenic | 20.0% |
!! | ATATTATGGCAATATATATC+AGG | - | chr1.2:9589234-9589253 | MS.gene60238:intron | 20.0% |
!! | ATTATAGTGTAATAATCATC+AGG | - | chr1.2:9589489-9589508 | MS.gene60238:intron | 20.0% |
!! | CTTCAATTATCATATCATAA+GGG | + | chr1.2:9590832-9590851 | None:intergenic | 20.0% |
!! | GAAATTATAATACTTCTCAT+TGG | + | chr1.2:9589842-9589861 | None:intergenic | 20.0% |
!! | TGAACTAAAATATCTTAAGA+AGG | - | chr1.2:9589700-9589719 | MS.gene60238:intron | 20.0% |
!! | TTCAATTAATAACAATGAGT+TGG | + | chr1.2:9588902-9588921 | None:intergenic | 20.0% |
!! | TTTAAATATGAACGTTACAT+TGG | - | chr1.2:9589032-9589051 | MS.gene60238:intron | 20.0% |
!!! | ATTTTAACACATTGTTTTCA+AGG | - | chr1.2:9589808-9589827 | MS.gene60238:intron | 20.0% |
!!! | TTTTCTATCTTCTACAAAAA+CGG | + | chr1.2:9589272-9589291 | None:intergenic | 20.0% |
! | AAAATTTGAACTGTTACAAC+AGG | - | chr1.2:9589352-9589371 | MS.gene60238:intron | 25.0% |
! | AAATTTGAACTGTTACAACA+GGG | - | chr1.2:9589353-9589372 | MS.gene60238:intron | 25.0% |
! | AATATATATCAGGAACCAAA+AGG | - | chr1.2:9589244-9589263 | MS.gene60238:intron | 25.0% |
! | ATATATATCAGGAACCAAAA+GGG | - | chr1.2:9589245-9589264 | MS.gene60238:intron | 25.0% |
! | ATGATATGATAATTGAAGCA+TGG | - | chr1.2:9590834-9590853 | MS.gene60238:intron | 25.0% |
! | GATACTTCTTACCAATAATT+TGG | - | chr1.2:9589193-9589212 | MS.gene60238:intron | 25.0% |
! | GCTTCAATTATCATATCATA+AGG | + | chr1.2:9590833-9590852 | None:intergenic | 25.0% |
! | GGAATATTCTTCAATTTGTA+TGG | - | chr1.2:9590911-9590930 | MS.gene60238:intron | 25.0% |
! | TAAAATGCTTAGCACATTAT+TGG | - | chr1.2:9589780-9589799 | MS.gene60238:intron | 25.0% |
! | TAAATCATGATCATGGTATA+TGG | + | chr1.2:9590338-9590357 | None:intergenic | 25.0% |
! | TTGAAAGTTGTTTGAAAGTA+TGG | - | chr1.2:9589863-9589882 | MS.gene60238:intron | 25.0% |
!! | AAAGAGAAAAAGTACATGTA+TGG | + | chr1.2:9588654-9588673 | None:intergenic | 25.0% |
!! | CAACTAAGAACAAATTTTGA+GGG | - | chr1.2:9590457-9590476 | MS.gene60238:intron | 25.0% |
!! | GTTTTTGTAGAAGATAGAAA+AGG | - | chr1.2:9589271-9589290 | MS.gene60238:intron | 25.0% |
!! | TATTTTCTATGATGGCTTTT+AGG | - | chr1.2:9591021-9591040 | MS.gene60238:CDS | 25.0% |
!! | TCAACTAAGAACAAATTTTG+AGG | - | chr1.2:9590456-9590475 | MS.gene60238:intron | 25.0% |
!! | TCAAGTAATGTGAGAAATTT+TGG | + | chr1.2:9590377-9590396 | None:intergenic | 25.0% |
!!! | TATTAACTGATTTGAGCTAA+AGG | + | chr1.2:9590026-9590045 | None:intergenic | 25.0% |
AAAGTACATGTATGGTTGAT+TGG | + | chr1.2:9588646-9588665 | None:intergenic | 30.0% | |
AAGAATGGATCATGCTAATA+TGG | + | chr1.2:9589460-9589479 | None:intergenic | 30.0% | |
ACAAACTTAGTTAAGTGTAC+CGG | + | chr1.2:9590628-9590647 | None:intergenic | 30.0% | |
ACAAGAGTAAATCATGATCA+TGG | + | chr1.2:9590345-9590364 | None:intergenic | 30.0% | |
AGAACATTGAAGCTAGAATA+AGG | - | chr1.2:9590539-9590558 | MS.gene60238:intron | 30.0% | |
AGTAAAGAGCTCATTAAAGA+TGG | - | chr1.2:9589131-9589150 | MS.gene60238:intron | 30.0% | |
ATATGTTATTCTAACTGACC+AGG | + | chr1.2:9589528-9589547 | None:intergenic | 30.0% | |
CACTAAATTTCGTTTGCATT+AGG | + | chr1.2:9590886-9590905 | None:intergenic | 30.0% | |
GAAAATAAATGGTTGGATTC+CGG | + | chr1.2:9588320-9588339 | None:intergenic | 30.0% | |
GAACTCAGATATCTTAATCA+AGG | - | chr1.2:9589068-9589087 | MS.gene60238:intron | 30.0% | |
GATAAAGTGAAAGCAATAAG+CGG | - | chr1.2:9588536-9588555 | MS.gene60238:intron | 30.0% | |
TGCATTAGGTAAAAAAGACA+AGG | + | chr1.2:9590872-9590891 | None:intergenic | 30.0% | |
! | TATCTGAGTTCAGTTTTACT+CGG | + | chr1.2:9589059-9589078 | None:intergenic | 30.0% |
!! | ATAATACTTCTCATTGGCTT+AGG | + | chr1.2:9589836-9589855 | None:intergenic | 30.0% |
!! | CACAAGTACAATAGTTCTAA+TGG | - | chr1.2:9590989-9591008 | MS.gene60238:CDS | 30.0% |
!! | TTATGAAGCTTGATGATGTA+TGG | + | chr1.2:9590716-9590735 | None:intergenic | 30.0% |
AAAGTGGTGTCTTAGATTTG+AGG | - | chr1.2:9590514-9590533 | MS.gene60238:intron | 35.0% | |
AAATAGAGCTGGAGTTCATT+GGG | - | chr1.2:9588403-9588422 | MS.gene60238:intron | 35.0% | |
AGGTTAAACGAGCTAAAGAA+CGG | + | chr1.2:9590006-9590025 | None:intergenic | 35.0% | |
ATCACCCTCACACTATAAAA+GGG | + | chr1.2:9590072-9590091 | None:intergenic | 35.0% | |
ATTGCTTTCACTTTATCCAC+CGG | + | chr1.2:9588533-9588552 | None:intergenic | 35.0% | |
CAAACGAAATTTAGTGACTG+GGG | - | chr1.2:9590890-9590909 | MS.gene60238:intron | 35.0% | |
CATGTTTAGTGTGGAAAATG+TGG | - | chr1.2:9590280-9590299 | MS.gene60238:intron | 35.0% | |
CTCACATTACTTGAGAATTG+AGG | - | chr1.2:9590383-9590402 | MS.gene60238:intron | 35.0% | |
GCAAACGAAATTTAGTGACT+GGG | - | chr1.2:9590889-9590908 | MS.gene60238:intron | 35.0% | |
GCTATATCTCATGTTTAGTG+TGG | - | chr1.2:9590271-9590290 | MS.gene60238:intron | 35.0% | |
GGATCATGCTAATATGGTAA+TGG | + | chr1.2:9589454-9589473 | None:intergenic | 35.0% | |
GGCTTACACAATACTCAATA+CGG | - | chr1.2:9590478-9590497 | MS.gene60238:intron | 35.0% | |
GTAAACAGAAACCTGAATCT+TGG | - | chr1.2:9590139-9590158 | MS.gene60238:intron | 35.0% | |
GTGGATGAGAAAATGTGATT+GGG | - | chr1.2:9589108-9589127 | MS.gene60238:intron | 35.0% | |
GTTGATTGGAATTAAGCATG+TGG | + | chr1.2:9588632-9588651 | None:intergenic | 35.0% | |
TATCACCCTCACACTATAAA+AGG | + | chr1.2:9590073-9590092 | None:intergenic | 35.0% | |
TCTCAATGAGTAATGAGTTG+AGG | + | chr1.2:9590430-9590449 | None:intergenic | 35.0% | |
TGCAAACGAAATTTAGTGAC+TGG | - | chr1.2:9590888-9590907 | MS.gene60238:intron | 35.0% | |
TGGTATGATACATACATACG+TGG | + | chr1.2:9588612-9588631 | None:intergenic | 35.0% | |
TTGTTCAAAGGATTCCTCAA+TGG | - | chr1.2:9591047-9591066 | MS.gene60238:CDS | 35.0% | |
! | AATGTCCCTTTTATAGTGTG+AGG | - | chr1.2:9590064-9590083 | MS.gene60238:intron | 35.0% |
! | ATGTCCCTTTTATAGTGTGA+GGG | - | chr1.2:9590065-9590084 | MS.gene60238:intron | 35.0% |
! | TGGCTTGTCAAACTATTGTT+GGG | - | chr1.2:9590166-9590185 | MS.gene60238:intron | 35.0% |
!! | ATCCAACCATTTATTTTCCC+CGG | - | chr1.2:9588322-9588341 | MS.gene60238:intron | 35.0% |
!! | TCTAAGACACCACTTTTCAA+AGG | + | chr1.2:9590510-9590529 | None:intergenic | 35.0% |
!! | TTGGCTTGTCAAACTATTGT+TGG | - | chr1.2:9590165-9590184 | MS.gene60238:intron | 35.0% |
!!! | GCTTTTAGGTTGTTGTTCAA+AGG | - | chr1.2:9591035-9591054 | MS.gene60238:CDS | 35.0% |
AACAGAAACCTGAATCTTGG+AGG | - | chr1.2:9590142-9590161 | MS.gene60238:intron | 40.0% | |
AATAGAGCTGGAGTTCATTG+GGG | - | chr1.2:9588404-9588423 | MS.gene60238:intron | 40.0% | |
ATGAACTCCAGCTCTATTTC+CGG | + | chr1.2:9588402-9588421 | None:intergenic | 40.0% | |
CGTGGATGAGAAAATGTGAT+TGG | - | chr1.2:9589107-9589126 | MS.gene60238:intron | 40.0% | |
CTTAAGAGATTAATCGCGAG+TGG | + | chr1.2:9588747-9588766 | None:intergenic | 40.0% | |
GAAATAGAGCTGGAGTTCAT+TGG | - | chr1.2:9588402-9588421 | MS.gene60238:intron | 40.0% | |
GAACAAAGAAAACTCTGGCA+AGG | - | chr1.2:9590188-9590207 | MS.gene60238:intron | 40.0% | |
GTTCTGTTGCAGATCATTGA+AGG | - | chr1.2:9589647-9589666 | MS.gene60238:CDS | 40.0% | |
GTTGCAGATCATTGAAGGAA+AGG | - | chr1.2:9589652-9589671 | MS.gene60238:CDS | 40.0% | |
GTTGGGAACAAAGAAAACTC+TGG | - | chr1.2:9590183-9590202 | MS.gene60238:intron | 40.0% | |
TCAGGATGAATATGTTCTCC+TGG | - | chr1.2:9589507-9589526 | MS.gene60238:intron | 40.0% | |
! | CGGACAATACCTTTGAAAAG+TGG | - | chr1.2:9590498-9590517 | MS.gene60238:intron | 40.0% |
! | TAACTAAGTTTGTTCCCGTG+CGG | - | chr1.2:9590635-9590654 | MS.gene60238:intron | 40.0% |
! | TCTACAAAAACGGACCCTTT+TGG | + | chr1.2:9589262-9589281 | None:intergenic | 40.0% |
! | TTTTAGCCCCATAGCCTAAA+GGG | - | chr1.2:9590592-9590611 | MS.gene60238:intron | 40.0% |
AATGGTTGGATTCCGGTTAC+CGG | + | chr1.2:9588313-9588332 | None:intergenic | 45.0% | |
AGTAGTCCCCTTTAGGCTAT+GGG | + | chr1.2:9590602-9590621 | None:intergenic | 45.0% | |
AGTGTGGAAAATGTGGTGCT+AGG | - | chr1.2:9590287-9590306 | MS.gene60238:intron | 45.0% | |
CTTTAGGCTATGGGGCTAAA+AGG | + | chr1.2:9590593-9590612 | None:intergenic | 45.0% | |
GAAACCTGAATCTTGGAGGT+TGG | - | chr1.2:9590146-9590165 | MS.gene60238:intron | 45.0% | |
GCCACGAAACAAACTGAGTT+CGG | + | chr1.2:9588354-9588373 | None:intergenic | 45.0% | |
GGTCTCATATTAGAGTCTCG+TGG | - | chr1.2:9589089-9589108 | MS.gene60238:intron | 45.0% | |
TGATTGCAGCCAAAACCAGA+GGG | - | chr1.2:9588494-9588513 | MS.gene60238:intron | 45.0% | |
TTGATTGCAGCCAAAACCAG+AGG | - | chr1.2:9588493-9588512 | MS.gene60238:intron | 45.0% | |
TTTAGCCCCATAGCCTAAAG+GGG | - | chr1.2:9590593-9590612 | MS.gene60238:intron | 45.0% | |
! | ACCGAACTCAGTTTGTTTCG+TGG | - | chr1.2:9588350-9588369 | MS.gene60238:intron | 45.0% |
! | CTTTTAGCCCCATAGCCTAA+AGG | - | chr1.2:9590591-9590610 | MS.gene60238:intron | 45.0% |
! | GAGTAATGAGTTGAGGAGAG+TGG | + | chr1.2:9590423-9590442 | None:intergenic | 45.0% |
!! | CAACCATTTATTTTCCCCGG+CGG | - | chr1.2:9588325-9588344 | MS.gene60238:intron | 45.0% |
!! | CAGGGAAAGTTGATGAACTG+CGG | - | chr1.2:9589371-9589390 | MS.gene60238:intron | 45.0% |
!!! | AATTATTTCTTAAATAAATT+CGG | - | chr1.2:9588712-9588731 | MS.gene60238:intron | 5.0% |
AACTCCAGCTCTATTTCCGG+AGG | + | chr1.2:9588399-9588418 | None:intergenic | 50.0% | |
AGCCAAAACCAGAGGGTGAT+GGG | - | chr1.2:9588501-9588520 | MS.gene60238:intron | 50.0% | |
AGCTCTATTTCCGGAGGAGA+AGG | + | chr1.2:9588393-9588412 | None:intergenic | 50.0% | |
AGGACATACGCCAAATGCGA+TGG | - | chr1.2:9590559-9590578 | MS.gene60238:intron | 50.0% | |
CAAGCCAACCTCCAAGATTC+AGG | + | chr1.2:9590153-9590172 | None:intergenic | 50.0% | |
CAGTAGTCCCCTTTAGGCTA+TGG | + | chr1.2:9590603-9590622 | None:intergenic | 50.0% | |
CCTAAAGGGGACTACTGTTC+CGG | - | chr1.2:9590606-9590625 | MS.gene60238:intron | 50.0% | |
CGCCAAATGCGATGGTTGAT+AGG | - | chr1.2:9590567-9590586 | MS.gene60238:intron | 50.0% | |
CGCCGGGGAAAATAAATGGT+TGG | + | chr1.2:9588327-9588346 | None:intergenic | 50.0% | |
GGCCTATCAACCATCGCATT+TGG | + | chr1.2:9590572-9590591 | None:intergenic | 50.0% | |
GTAGTCCCCTTTAGGCTATG+GGG | + | chr1.2:9590601-9590620 | None:intergenic | 50.0% | |
TAAGCGGAGAGAAGCTGATG+AGG | - | chr1.2:9588552-9588571 | MS.gene60238:intron | 50.0% | |
TTCTCCTCCGGAAATAGAGC+TGG | - | chr1.2:9588392-9588411 | MS.gene60238:intron | 50.0% | |
!! | GCTGATGAGGAGCATCATGT+CGG | - | chr1.2:9588565-9588584 | MS.gene60238:intron | 50.0% |
!! | GGAAAGTTGATGAACTGCGG+CGG | - | chr1.2:9589374-9589393 | MS.gene60238:intron | 50.0% |
CAGCCAAAACCAGAGGGTGA+TGG | - | chr1.2:9588500-9588519 | MS.gene60238:intron | 55.0% | |
CCGGAACAGTAGTCCCCTTT+AGG | + | chr1.2:9590609-9590628 | None:intergenic | 55.0% | |
CTGCGGAACTTGCATAGTCG+AGG | - | chr1.2:9589406-9589425 | MS.gene60238:intron | 55.0% | |
GCCTGAATCTCCTTCTCCTC+CGG | - | chr1.2:9588380-9588399 | MS.gene60238:intron | 55.0% | |
TAGAACTCAAGCCTGCCGCA+CGG | + | chr1.2:9590653-9590672 | None:intergenic | 55.0% | |
TCCGGAGGAGAAGGAGATTC+AGG | + | chr1.2:9588384-9588403 | None:intergenic | 55.0% | |
TCGCCGCCGGGGAAAATAAA+TGG | + | chr1.2:9588331-9588350 | None:intergenic | 55.0% | |
! | TAAGTTTGTTCCCGTGCGGC+AGG | - | chr1.2:9590639-9590658 | MS.gene60238:intron | 55.0% |
!! | AAGTTGATGAACTGCGGCGG+AGG | - | chr1.2:9589377-9589396 | MS.gene60238:intron | 55.0% |
!! | AGAGGGTGATGGGTCGTTTC+CGG | - | chr1.2:9588511-9588530 | MS.gene60238:intron | 55.0% |
!! | AGTTGATGAACTGCGGCGGA+GGG | - | chr1.2:9589378-9589397 | MS.gene60238:intron | 55.0% |
!! | GACCCATCACCCTCTGGTTT+TGG | + | chr1.2:9588506-9588525 | None:intergenic | 55.0% |
AAACTGAGTTCGGTCGCCGC+CGG | + | chr1.2:9588344-9588363 | None:intergenic | 60.0% | |
ACACCAGTTCCACTCACCGC+CGG | - | chr1.2:9588291-9588310 | MS.gene60238:intron | 60.0% | |
AGAACTCAAGCCTGCCGCAC+GGG | + | chr1.2:9590652-9590671 | None:intergenic | 60.0% | |
GGAAACGACCCATCACCCTC+TGG | + | chr1.2:9588512-9588531 | None:intergenic | 60.0% | |
GGTTGGATTCCGGTTACCGG+CGG | + | chr1.2:9588310-9588329 | None:intergenic | 60.0% | |
TTACCGGCGGTGAGTGGAAC+TGG | + | chr1.2:9588297-9588316 | None:intergenic | 60.0% | |
TTCCACTCACCGCCGGTAAC+CGG | - | chr1.2:9588298-9588317 | MS.gene60238:intron | 60.0% | |
TTGATGAACTGCGGCGGAGG+GGG | - | chr1.2:9589380-9589399 | MS.gene60238:intron | 60.0% | |
! | GTTGATGAACTGCGGCGGAG+GGG | - | chr1.2:9589379-9589398 | MS.gene60238:intron | 60.0% |
AACTGAGTTCGGTCGCCGCC+GGG | + | chr1.2:9588343-9588362 | None:intergenic | 65.0% | |
TTCCGGTTACCGGCGGTGAG+TGG | + | chr1.2:9588303-9588322 | None:intergenic | 65.0% | |
!! | GGGTGATGGGTCGTTTCCGG+TGG | - | chr1.2:9588514-9588533 | MS.gene60238:intron | 65.0% |
ACTGAGTTCGGTCGCCGCCG+GGG | + | chr1.2:9588342-9588361 | None:intergenic | 70.0% | |
TGCGGCGGAGGGGGTAGCTG+CGG | - | chr1.2:9589389-9589408 | MS.gene60238:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 9588267 | 9591078 | 9588267 | ID=MS.gene60238 |
chr1.2 | mRNA | 9588267 | 9591078 | 9588267 | ID=MS.gene60238.t1;Parent=MS.gene60238 |
chr1.2 | exon | 9590920 | 9591078 | 9590920 | ID=MS.gene60238.t1.exon1;Parent=MS.gene60238.t1 |
chr1.2 | CDS | 9590920 | 9591078 | 9590920 | ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1 |
chr1.2 | exon | 9590729 | 9590842 | 9590729 | ID=MS.gene60238.t1.exon2;Parent=MS.gene60238.t1 |
chr1.2 | CDS | 9590729 | 9590842 | 9590729 | ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1 |
chr1.2 | exon | 9589918 | 9589971 | 9589918 | ID=MS.gene60238.t1.exon3;Parent=MS.gene60238.t1 |
chr1.2 | CDS | 9589918 | 9589971 | 9589918 | ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1 |
chr1.2 | exon | 9589624 | 9589686 | 9589624 | ID=MS.gene60238.t1.exon4;Parent=MS.gene60238.t1 |
chr1.2 | CDS | 9589624 | 9589686 | 9589624 | ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1 |
chr1.2 | exon | 9589136 | 9589198 | 9589136 | ID=MS.gene60238.t1.exon5;Parent=MS.gene60238.t1 |
chr1.2 | CDS | 9589136 | 9589198 | 9589136 | ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1 |
chr1.2 | exon | 9588267 | 9588302 | 9588267 | ID=MS.gene60238.t1.exon6;Parent=MS.gene60238.t1 |
chr1.2 | CDS | 9588267 | 9588302 | 9588267 | ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1 |
Gene Sequence |
Protein sequence |