AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60238


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60238.t1 MTR_1g011510 96.319 163 5 1 1 162 1 163 2.21e-113 318
MS.gene60238.t1 MTR_2g101380 43.030 165 84 4 6 161 11 174 2.46e-37 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60238.t1 AT4G32590 84.167 120 19 0 43 162 54 173 1.02e-62 191
MS.gene60238.t1 AT4G32590 82.569 109 19 0 43 151 54 162 1.18e-53 168
MS.gene60238.t1 AT4G32590 78.409 88 19 0 43 130 54 141 6.70e-37 125
MS.gene60238.t1 AT3G16250 43.590 156 73 4 20 161 30 184 3.85e-35 122
MS.gene60238.t1 AT4G32590 80.597 67 13 0 43 109 54 120 2.38e-24 92.0
MS.gene60238.t1 AT4G32590 75.510 49 12 0 43 91 54 102 4.47e-21 83.2

Find 56 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCCAACCTCCAAGATTC+AGG 0.247976 1.2:+9589173 None:intergenic
GACCCATCACCCTCTGGTTT+TGG 0.288686 1.2:+9590820 None:intergenic
GAAAATAAATGGTTGGATTC+CGG 0.304867 1.2:+9591006 None:intergenic
ATGAACTCCAGCTCTATTTC+CGG 0.309865 1.2:+9590924 None:intergenic
TCCGGAGGAGAAGGAGATTC+AGG 0.327786 1.2:+9590942 None:intergenic
TCGCCGCCGGGGAAAATAAA+TGG 0.351768 1.2:+9590995 None:intergenic
AATGGTTGGATTCCGGTTAC+CGG 0.353946 1.2:+9591013 None:intergenic
AGAGGGTGATGGGTCGTTTC+CGG 0.362222 1.2:-9590812 MS.gene60238:CDS
GTAAACAGAAACCTGAATCT+TGG 0.374507 1.2:-9589184 MS.gene60238:intron
TTACCGGCGGTGAGTGGAAC+TGG 0.390189 1.2:+9591029 None:intergenic
AAATAGAGCTGGAGTTCATT+GGG 0.393000 1.2:-9590920 MS.gene60238:CDS
GAAATAGAGCTGGAGTTCAT+TGG 0.409789 1.2:-9590921 MS.gene60238:CDS
TTGGCTTGTCAAACTATTGT+TGG 0.412378 1.2:-9589158 MS.gene60238:CDS
TTCCACTCACCGCCGGTAAC+CGG 0.413919 1.2:-9591025 MS.gene60238:CDS
AAGTTGATGAACTGCGGCGG+AGG 0.442332 1.2:-9589946 MS.gene60238:CDS
GTTCTGTTGCAGATCATTGA+AGG 0.445150 1.2:-9589676 MS.gene60238:intron
TGGCTTGTCAAACTATTGTT+GGG 0.446620 1.2:-9589157 MS.gene60238:CDS
AACTGAGTTCGGTCGCCGCC+GGG 0.457166 1.2:+9590983 None:intergenic
GCCTGAATCTCCTTCTCCTC+CGG 0.472889 1.2:-9590943 MS.gene60238:CDS
GCCACGAAACAAACTGAGTT+CGG 0.475849 1.2:+9590972 None:intergenic
TTGATGAACTGCGGCGGAGG+GGG 0.486976 1.2:-9589943 MS.gene60238:CDS
TGATATTACTTCTTCCATTG+AGG 0.490864 1.2:+9588262 None:intergenic
ACCGAACTCAGTTTGTTTCG+TGG 0.500054 1.2:-9590973 MS.gene60238:CDS
AGCTCTATTTCCGGAGGAGA+AGG 0.500109 1.2:+9590933 None:intergenic
AGTTGATGAACTGCGGCGGA+GGG 0.500666 1.2:-9589945 MS.gene60238:CDS
TTCTCCTCCGGAAATAGAGC+TGG 0.505143 1.2:-9590931 MS.gene60238:CDS
AAACTGAGTTCGGTCGCCGC+CGG 0.506246 1.2:+9590982 None:intergenic
ATTGCTTTCACTTTATCCAC+CGG 0.506855 1.2:+9590793 None:intergenic
CAGCCAAAACCAGAGGGTGA+TGG 0.518767 1.2:-9590823 MS.gene60238:CDS
GAAACCTGAATCTTGGAGGT+TGG 0.519969 1.2:-9589177 MS.gene60238:CDS
TTCCGGTTACCGGCGGTGAG+TGG 0.524356 1.2:+9591023 None:intergenic
TGAACTAAAATATCTTAAGA+AGG 0.529764 1.2:-9589623 MS.gene60238:intron
TTGTTCAAAGGATTCCTCAA+TGG 0.532551 1.2:-9588276 MS.gene60238:CDS
GTTGCAGATCATTGAAGGAA+AGG 0.538608 1.2:-9589671 MS.gene60238:intron
AACAGAAACCTGAATCTTGG+AGG 0.539774 1.2:-9589181 MS.gene60238:intron
AGCCAAAACCAGAGGGTGAT+GGG 0.553792 1.2:-9590822 MS.gene60238:CDS
GGAAACGACCCATCACCCTC+TGG 0.569559 1.2:+9590814 None:intergenic
CGCCGGGGAAAATAAATGGT+TGG 0.580484 1.2:+9590999 None:intergenic
TAAGCGGAGAGAAGCTGATG+AGG 0.586456 1.2:-9590771 MS.gene60238:CDS
GTTGGGAACAAAGAAAACTC+TGG 0.588901 1.2:-9589140 MS.gene60238:CDS
GGGTGATGGGTCGTTTCCGG+TGG 0.591158 1.2:-9590809 MS.gene60238:CDS
GTTGATGAACTGCGGCGGAG+GGG 0.596821 1.2:-9589944 MS.gene60238:CDS
ACTGAGTTCGGTCGCCGCCG+GGG 0.605244 1.2:+9590984 None:intergenic
ACACCAGTTCCACTCACCGC+CGG 0.614691 1.2:-9591032 MS.gene60238:CDS
TTGATTGCAGCCAAAACCAG+AGG 0.640341 1.2:-9590830 MS.gene60238:intron
TGATTGCAGCCAAAACCAGA+GGG 0.640990 1.2:-9590829 MS.gene60238:intron
AACTCCAGCTCTATTTCCGG+AGG 0.644295 1.2:+9590927 None:intergenic
GAACAAAGAAAACTCTGGCA+AGG 0.650067 1.2:-9589135 MS.gene60238:intron
CTGCGGAACTTGCATAGTCG+AGG 0.652849 1.2:-9589917 MS.gene60238:intron
GGTTGGATTCCGGTTACCGG+CGG 0.656174 1.2:+9591016 None:intergenic
GCTGATGAGGAGCATCATGT+CGG 0.664064 1.2:-9590758 MS.gene60238:CDS
GGAAAGTTGATGAACTGCGG+CGG 0.675156 1.2:-9589949 MS.gene60238:CDS
GATAAAGTGAAAGCAATAAG+CGG 0.697309 1.2:-9590787 MS.gene60238:CDS
CAGGGAAAGTTGATGAACTG+CGG 0.704168 1.2:-9589952 MS.gene60238:CDS
AATAGAGCTGGAGTTCATTG+GGG 0.704244 1.2:-9590919 MS.gene60238:intron
TGGTATGATACATACATACG+TGG 0.709659 1.2:+9590714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTCTTCTATAAAAAAA+AGG - chr1.2:9588921-9588940 MS.gene60238:intron 10.0%
!! ATTAATTAATTTCAAAATCT+AGG + chr1.2:9590100-9590119 None:intergenic 10.0%
!! TATAAAATATATTCATTTCT+TGG + chr1.2:9589560-9589579 None:intergenic 10.0%
!! TATAATAATAACAATAAGAA+TGG + chr1.2:9589475-9589494 None:intergenic 10.0%
!!! AACAATTTTCAATATATATA+TGG - chr1.2:9590673-9590692 MS.gene60238:intron 10.0%
!!! TAAATTTTTAGATTAATCAT+CGG - chr1.2:9589159-9589178 MS.gene60238:CDS 10.0%
!! AAAATGAACATTTCATATTA+TGG - chr1.2:9589220-9589239 MS.gene60238:intron 15.0%
!! AAACTTCTTATATCATATAT+AGG + chr1.2:9589914-9589933 None:intergenic 15.0%
!!! TCATTTTTTAACCAAATTAT+TGG + chr1.2:9589207-9589226 None:intergenic 15.0%
!!! TTCATTTATATTTTCTATGA+TGG - chr1.2:9591013-9591032 MS.gene60238:CDS 15.0%
!!! TTTTACTATGACTATTATTA+AGG + chr1.2:9588864-9588883 None:intergenic 15.0%
!! AAACAGACTTAATTCATATA+AGG + chr1.2:9590803-9590822 None:intergenic 20.0%
!! ATATTATGGCAATATATATC+AGG - chr1.2:9589234-9589253 MS.gene60238:intron 20.0%
!! ATTATAGTGTAATAATCATC+AGG - chr1.2:9589489-9589508 MS.gene60238:intron 20.0%
!! CTTCAATTATCATATCATAA+GGG + chr1.2:9590832-9590851 None:intergenic 20.0%
!! GAAATTATAATACTTCTCAT+TGG + chr1.2:9589842-9589861 None:intergenic 20.0%
!! TGAACTAAAATATCTTAAGA+AGG - chr1.2:9589700-9589719 MS.gene60238:intron 20.0%
!! TTCAATTAATAACAATGAGT+TGG + chr1.2:9588902-9588921 None:intergenic 20.0%
!! TTTAAATATGAACGTTACAT+TGG - chr1.2:9589032-9589051 MS.gene60238:intron 20.0%
!!! ATTTTAACACATTGTTTTCA+AGG - chr1.2:9589808-9589827 MS.gene60238:intron 20.0%
!!! TTTTCTATCTTCTACAAAAA+CGG + chr1.2:9589272-9589291 None:intergenic 20.0%
! AAAATTTGAACTGTTACAAC+AGG - chr1.2:9589352-9589371 MS.gene60238:intron 25.0%
! AAATTTGAACTGTTACAACA+GGG - chr1.2:9589353-9589372 MS.gene60238:intron 25.0%
! AATATATATCAGGAACCAAA+AGG - chr1.2:9589244-9589263 MS.gene60238:intron 25.0%
! ATATATATCAGGAACCAAAA+GGG - chr1.2:9589245-9589264 MS.gene60238:intron 25.0%
! ATGATATGATAATTGAAGCA+TGG - chr1.2:9590834-9590853 MS.gene60238:intron 25.0%
! GATACTTCTTACCAATAATT+TGG - chr1.2:9589193-9589212 MS.gene60238:intron 25.0%
! GCTTCAATTATCATATCATA+AGG + chr1.2:9590833-9590852 None:intergenic 25.0%
! GGAATATTCTTCAATTTGTA+TGG - chr1.2:9590911-9590930 MS.gene60238:intron 25.0%
! TAAAATGCTTAGCACATTAT+TGG - chr1.2:9589780-9589799 MS.gene60238:intron 25.0%
! TAAATCATGATCATGGTATA+TGG + chr1.2:9590338-9590357 None:intergenic 25.0%
! TTGAAAGTTGTTTGAAAGTA+TGG - chr1.2:9589863-9589882 MS.gene60238:intron 25.0%
!! AAAGAGAAAAAGTACATGTA+TGG + chr1.2:9588654-9588673 None:intergenic 25.0%
!! CAACTAAGAACAAATTTTGA+GGG - chr1.2:9590457-9590476 MS.gene60238:intron 25.0%
!! GTTTTTGTAGAAGATAGAAA+AGG - chr1.2:9589271-9589290 MS.gene60238:intron 25.0%
!! TATTTTCTATGATGGCTTTT+AGG - chr1.2:9591021-9591040 MS.gene60238:CDS 25.0%
!! TCAACTAAGAACAAATTTTG+AGG - chr1.2:9590456-9590475 MS.gene60238:intron 25.0%
!! TCAAGTAATGTGAGAAATTT+TGG + chr1.2:9590377-9590396 None:intergenic 25.0%
!!! TATTAACTGATTTGAGCTAA+AGG + chr1.2:9590026-9590045 None:intergenic 25.0%
AAAGTACATGTATGGTTGAT+TGG + chr1.2:9588646-9588665 None:intergenic 30.0%
AAGAATGGATCATGCTAATA+TGG + chr1.2:9589460-9589479 None:intergenic 30.0%
ACAAACTTAGTTAAGTGTAC+CGG + chr1.2:9590628-9590647 None:intergenic 30.0%
ACAAGAGTAAATCATGATCA+TGG + chr1.2:9590345-9590364 None:intergenic 30.0%
AGAACATTGAAGCTAGAATA+AGG - chr1.2:9590539-9590558 MS.gene60238:intron 30.0%
AGTAAAGAGCTCATTAAAGA+TGG - chr1.2:9589131-9589150 MS.gene60238:intron 30.0%
ATATGTTATTCTAACTGACC+AGG + chr1.2:9589528-9589547 None:intergenic 30.0%
CACTAAATTTCGTTTGCATT+AGG + chr1.2:9590886-9590905 None:intergenic 30.0%
GAAAATAAATGGTTGGATTC+CGG + chr1.2:9588320-9588339 None:intergenic 30.0%
GAACTCAGATATCTTAATCA+AGG - chr1.2:9589068-9589087 MS.gene60238:intron 30.0%
GATAAAGTGAAAGCAATAAG+CGG - chr1.2:9588536-9588555 MS.gene60238:intron 30.0%
TGCATTAGGTAAAAAAGACA+AGG + chr1.2:9590872-9590891 None:intergenic 30.0%
! TATCTGAGTTCAGTTTTACT+CGG + chr1.2:9589059-9589078 None:intergenic 30.0%
!! ATAATACTTCTCATTGGCTT+AGG + chr1.2:9589836-9589855 None:intergenic 30.0%
!! CACAAGTACAATAGTTCTAA+TGG - chr1.2:9590989-9591008 MS.gene60238:CDS 30.0%
!! TTATGAAGCTTGATGATGTA+TGG + chr1.2:9590716-9590735 None:intergenic 30.0%
AAAGTGGTGTCTTAGATTTG+AGG - chr1.2:9590514-9590533 MS.gene60238:intron 35.0%
AAATAGAGCTGGAGTTCATT+GGG - chr1.2:9588403-9588422 MS.gene60238:intron 35.0%
AGGTTAAACGAGCTAAAGAA+CGG + chr1.2:9590006-9590025 None:intergenic 35.0%
ATCACCCTCACACTATAAAA+GGG + chr1.2:9590072-9590091 None:intergenic 35.0%
ATTGCTTTCACTTTATCCAC+CGG + chr1.2:9588533-9588552 None:intergenic 35.0%
CAAACGAAATTTAGTGACTG+GGG - chr1.2:9590890-9590909 MS.gene60238:intron 35.0%
CATGTTTAGTGTGGAAAATG+TGG - chr1.2:9590280-9590299 MS.gene60238:intron 35.0%
CTCACATTACTTGAGAATTG+AGG - chr1.2:9590383-9590402 MS.gene60238:intron 35.0%
GCAAACGAAATTTAGTGACT+GGG - chr1.2:9590889-9590908 MS.gene60238:intron 35.0%
GCTATATCTCATGTTTAGTG+TGG - chr1.2:9590271-9590290 MS.gene60238:intron 35.0%
GGATCATGCTAATATGGTAA+TGG + chr1.2:9589454-9589473 None:intergenic 35.0%
GGCTTACACAATACTCAATA+CGG - chr1.2:9590478-9590497 MS.gene60238:intron 35.0%
GTAAACAGAAACCTGAATCT+TGG - chr1.2:9590139-9590158 MS.gene60238:intron 35.0%
GTGGATGAGAAAATGTGATT+GGG - chr1.2:9589108-9589127 MS.gene60238:intron 35.0%
GTTGATTGGAATTAAGCATG+TGG + chr1.2:9588632-9588651 None:intergenic 35.0%
TATCACCCTCACACTATAAA+AGG + chr1.2:9590073-9590092 None:intergenic 35.0%
TCTCAATGAGTAATGAGTTG+AGG + chr1.2:9590430-9590449 None:intergenic 35.0%
TGCAAACGAAATTTAGTGAC+TGG - chr1.2:9590888-9590907 MS.gene60238:intron 35.0%
TGGTATGATACATACATACG+TGG + chr1.2:9588612-9588631 None:intergenic 35.0%
TTGTTCAAAGGATTCCTCAA+TGG - chr1.2:9591047-9591066 MS.gene60238:CDS 35.0%
! AATGTCCCTTTTATAGTGTG+AGG - chr1.2:9590064-9590083 MS.gene60238:intron 35.0%
! ATGTCCCTTTTATAGTGTGA+GGG - chr1.2:9590065-9590084 MS.gene60238:intron 35.0%
! TGGCTTGTCAAACTATTGTT+GGG - chr1.2:9590166-9590185 MS.gene60238:intron 35.0%
!! ATCCAACCATTTATTTTCCC+CGG - chr1.2:9588322-9588341 MS.gene60238:intron 35.0%
!! TCTAAGACACCACTTTTCAA+AGG + chr1.2:9590510-9590529 None:intergenic 35.0%
!! TTGGCTTGTCAAACTATTGT+TGG - chr1.2:9590165-9590184 MS.gene60238:intron 35.0%
!!! GCTTTTAGGTTGTTGTTCAA+AGG - chr1.2:9591035-9591054 MS.gene60238:CDS 35.0%
AACAGAAACCTGAATCTTGG+AGG - chr1.2:9590142-9590161 MS.gene60238:intron 40.0%
AATAGAGCTGGAGTTCATTG+GGG - chr1.2:9588404-9588423 MS.gene60238:intron 40.0%
ATGAACTCCAGCTCTATTTC+CGG + chr1.2:9588402-9588421 None:intergenic 40.0%
CGTGGATGAGAAAATGTGAT+TGG - chr1.2:9589107-9589126 MS.gene60238:intron 40.0%
CTTAAGAGATTAATCGCGAG+TGG + chr1.2:9588747-9588766 None:intergenic 40.0%
GAAATAGAGCTGGAGTTCAT+TGG - chr1.2:9588402-9588421 MS.gene60238:intron 40.0%
GAACAAAGAAAACTCTGGCA+AGG - chr1.2:9590188-9590207 MS.gene60238:intron 40.0%
GTTCTGTTGCAGATCATTGA+AGG - chr1.2:9589647-9589666 MS.gene60238:CDS 40.0%
GTTGCAGATCATTGAAGGAA+AGG - chr1.2:9589652-9589671 MS.gene60238:CDS 40.0%
GTTGGGAACAAAGAAAACTC+TGG - chr1.2:9590183-9590202 MS.gene60238:intron 40.0%
TCAGGATGAATATGTTCTCC+TGG - chr1.2:9589507-9589526 MS.gene60238:intron 40.0%
! CGGACAATACCTTTGAAAAG+TGG - chr1.2:9590498-9590517 MS.gene60238:intron 40.0%
! TAACTAAGTTTGTTCCCGTG+CGG - chr1.2:9590635-9590654 MS.gene60238:intron 40.0%
! TCTACAAAAACGGACCCTTT+TGG + chr1.2:9589262-9589281 None:intergenic 40.0%
! TTTTAGCCCCATAGCCTAAA+GGG - chr1.2:9590592-9590611 MS.gene60238:intron 40.0%
AATGGTTGGATTCCGGTTAC+CGG + chr1.2:9588313-9588332 None:intergenic 45.0%
AGTAGTCCCCTTTAGGCTAT+GGG + chr1.2:9590602-9590621 None:intergenic 45.0%
AGTGTGGAAAATGTGGTGCT+AGG - chr1.2:9590287-9590306 MS.gene60238:intron 45.0%
CTTTAGGCTATGGGGCTAAA+AGG + chr1.2:9590593-9590612 None:intergenic 45.0%
GAAACCTGAATCTTGGAGGT+TGG - chr1.2:9590146-9590165 MS.gene60238:intron 45.0%
GCCACGAAACAAACTGAGTT+CGG + chr1.2:9588354-9588373 None:intergenic 45.0%
GGTCTCATATTAGAGTCTCG+TGG - chr1.2:9589089-9589108 MS.gene60238:intron 45.0%
TGATTGCAGCCAAAACCAGA+GGG - chr1.2:9588494-9588513 MS.gene60238:intron 45.0%
TTGATTGCAGCCAAAACCAG+AGG - chr1.2:9588493-9588512 MS.gene60238:intron 45.0%
TTTAGCCCCATAGCCTAAAG+GGG - chr1.2:9590593-9590612 MS.gene60238:intron 45.0%
! ACCGAACTCAGTTTGTTTCG+TGG - chr1.2:9588350-9588369 MS.gene60238:intron 45.0%
! CTTTTAGCCCCATAGCCTAA+AGG - chr1.2:9590591-9590610 MS.gene60238:intron 45.0%
! GAGTAATGAGTTGAGGAGAG+TGG + chr1.2:9590423-9590442 None:intergenic 45.0%
!! CAACCATTTATTTTCCCCGG+CGG - chr1.2:9588325-9588344 MS.gene60238:intron 45.0%
!! CAGGGAAAGTTGATGAACTG+CGG - chr1.2:9589371-9589390 MS.gene60238:intron 45.0%
!!! AATTATTTCTTAAATAAATT+CGG - chr1.2:9588712-9588731 MS.gene60238:intron 5.0%
AACTCCAGCTCTATTTCCGG+AGG + chr1.2:9588399-9588418 None:intergenic 50.0%
AGCCAAAACCAGAGGGTGAT+GGG - chr1.2:9588501-9588520 MS.gene60238:intron 50.0%
AGCTCTATTTCCGGAGGAGA+AGG + chr1.2:9588393-9588412 None:intergenic 50.0%
AGGACATACGCCAAATGCGA+TGG - chr1.2:9590559-9590578 MS.gene60238:intron 50.0%
CAAGCCAACCTCCAAGATTC+AGG + chr1.2:9590153-9590172 None:intergenic 50.0%
CAGTAGTCCCCTTTAGGCTA+TGG + chr1.2:9590603-9590622 None:intergenic 50.0%
CCTAAAGGGGACTACTGTTC+CGG - chr1.2:9590606-9590625 MS.gene60238:intron 50.0%
CGCCAAATGCGATGGTTGAT+AGG - chr1.2:9590567-9590586 MS.gene60238:intron 50.0%
CGCCGGGGAAAATAAATGGT+TGG + chr1.2:9588327-9588346 None:intergenic 50.0%
GGCCTATCAACCATCGCATT+TGG + chr1.2:9590572-9590591 None:intergenic 50.0%
GTAGTCCCCTTTAGGCTATG+GGG + chr1.2:9590601-9590620 None:intergenic 50.0%
TAAGCGGAGAGAAGCTGATG+AGG - chr1.2:9588552-9588571 MS.gene60238:intron 50.0%
TTCTCCTCCGGAAATAGAGC+TGG - chr1.2:9588392-9588411 MS.gene60238:intron 50.0%
!! GCTGATGAGGAGCATCATGT+CGG - chr1.2:9588565-9588584 MS.gene60238:intron 50.0%
!! GGAAAGTTGATGAACTGCGG+CGG - chr1.2:9589374-9589393 MS.gene60238:intron 50.0%
CAGCCAAAACCAGAGGGTGA+TGG - chr1.2:9588500-9588519 MS.gene60238:intron 55.0%
CCGGAACAGTAGTCCCCTTT+AGG + chr1.2:9590609-9590628 None:intergenic 55.0%
CTGCGGAACTTGCATAGTCG+AGG - chr1.2:9589406-9589425 MS.gene60238:intron 55.0%
GCCTGAATCTCCTTCTCCTC+CGG - chr1.2:9588380-9588399 MS.gene60238:intron 55.0%
TAGAACTCAAGCCTGCCGCA+CGG + chr1.2:9590653-9590672 None:intergenic 55.0%
TCCGGAGGAGAAGGAGATTC+AGG + chr1.2:9588384-9588403 None:intergenic 55.0%
TCGCCGCCGGGGAAAATAAA+TGG + chr1.2:9588331-9588350 None:intergenic 55.0%
! TAAGTTTGTTCCCGTGCGGC+AGG - chr1.2:9590639-9590658 MS.gene60238:intron 55.0%
!! AAGTTGATGAACTGCGGCGG+AGG - chr1.2:9589377-9589396 MS.gene60238:intron 55.0%
!! AGAGGGTGATGGGTCGTTTC+CGG - chr1.2:9588511-9588530 MS.gene60238:intron 55.0%
!! AGTTGATGAACTGCGGCGGA+GGG - chr1.2:9589378-9589397 MS.gene60238:intron 55.0%
!! GACCCATCACCCTCTGGTTT+TGG + chr1.2:9588506-9588525 None:intergenic 55.0%
AAACTGAGTTCGGTCGCCGC+CGG + chr1.2:9588344-9588363 None:intergenic 60.0%
ACACCAGTTCCACTCACCGC+CGG - chr1.2:9588291-9588310 MS.gene60238:intron 60.0%
AGAACTCAAGCCTGCCGCAC+GGG + chr1.2:9590652-9590671 None:intergenic 60.0%
GGAAACGACCCATCACCCTC+TGG + chr1.2:9588512-9588531 None:intergenic 60.0%
GGTTGGATTCCGGTTACCGG+CGG + chr1.2:9588310-9588329 None:intergenic 60.0%
TTACCGGCGGTGAGTGGAAC+TGG + chr1.2:9588297-9588316 None:intergenic 60.0%
TTCCACTCACCGCCGGTAAC+CGG - chr1.2:9588298-9588317 MS.gene60238:intron 60.0%
TTGATGAACTGCGGCGGAGG+GGG - chr1.2:9589380-9589399 MS.gene60238:intron 60.0%
! GTTGATGAACTGCGGCGGAG+GGG - chr1.2:9589379-9589398 MS.gene60238:intron 60.0%
AACTGAGTTCGGTCGCCGCC+GGG + chr1.2:9588343-9588362 None:intergenic 65.0%
TTCCGGTTACCGGCGGTGAG+TGG + chr1.2:9588303-9588322 None:intergenic 65.0%
!! GGGTGATGGGTCGTTTCCGG+TGG - chr1.2:9588514-9588533 MS.gene60238:intron 65.0%
ACTGAGTTCGGTCGCCGCCG+GGG + chr1.2:9588342-9588361 None:intergenic 70.0%
TGCGGCGGAGGGGGTAGCTG+CGG - chr1.2:9589389-9589408 MS.gene60238:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 9588267 9591078 9588267 ID=MS.gene60238
chr1.2 mRNA 9588267 9591078 9588267 ID=MS.gene60238.t1;Parent=MS.gene60238
chr1.2 exon 9590920 9591078 9590920 ID=MS.gene60238.t1.exon1;Parent=MS.gene60238.t1
chr1.2 CDS 9590920 9591078 9590920 ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1
chr1.2 exon 9590729 9590842 9590729 ID=MS.gene60238.t1.exon2;Parent=MS.gene60238.t1
chr1.2 CDS 9590729 9590842 9590729 ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1
chr1.2 exon 9589918 9589971 9589918 ID=MS.gene60238.t1.exon3;Parent=MS.gene60238.t1
chr1.2 CDS 9589918 9589971 9589918 ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1
chr1.2 exon 9589624 9589686 9589624 ID=MS.gene60238.t1.exon4;Parent=MS.gene60238.t1
chr1.2 CDS 9589624 9589686 9589624 ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1
chr1.2 exon 9589136 9589198 9589136 ID=MS.gene60238.t1.exon5;Parent=MS.gene60238.t1
chr1.2 CDS 9589136 9589198 9589136 ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1
chr1.2 exon 9588267 9588302 9588267 ID=MS.gene60238.t1.exon6;Parent=MS.gene60238.t1
chr1.2 CDS 9588267 9588302 9588267 ID=cds.MS.gene60238.t1;Parent=MS.gene60238.t1
Gene Sequence

>MS.gene60238

ATGGCTTCTATGAACAATATATTCACACCAGTTCCACTCACCGCCGGTAACCGGAATCCAACCATTTATTTTCCCCGGCGGCGACCGAACTCAGTTTGTTTCGTGGCAAATTCGCCTGAATCTCCTTCTCCTCCGGAAATAGAGCTGGAGTTCATTGGGGTATCATTTCAATCATCATTTACATATTATTATTACAATTGTAGTTGAAATGAAAATGCGATGAAATTTGATTGCAGCCAAAACCAGAGGGTGATGGGTCGTTTCCGGTGGATAAAGTGAAAGCAATAAGCGGAGAGAAGCTGATGAGGAGCATCATGTCGGATAACAAGATTGAGCTTTATGCCACGTATGTATGTATCATACCACATGCTTAATTCCAATCAACCATACATGTACTTTTTCTCTTTTTATTTTATTCTTCTTTTTGTTTTTCATAAAAACTGAAAATTATTTCTTAAATAAATTCGGATAACTTTGCCACTCGCGATTAATCTCTTAAGTTATGAACAAATATTTATGATTAACTTGCAGAAAAAATTAGTGTTTGATATTGTTCTAATTCTAATGATATTGTTCTTTTTGTGCTAAACAAGTCCTTAATAATAGTCATAGTAAAAAATATTATGAATTTTCCAACTCATTGTTATTAATTGAATATTTCTTCTATAAAAAAAAGGTTAATATATATATAAATTTTTGTGTGTGTATAAAGAATTTTCTTTGTATATATAAAATTTATTGATTTATTTTAGAGAAAATTTATATTTTAAATATGAACGTTACATTGGTCCGAGTAAAACTGAACTCAGATATCTTAATCAAGGTCTCATATTAGAGTCTCGTGGATGAGAAAATGTGATTGGGAGTAAAGAGCTCATTAAAGATGGTCAGCTAAATTTTTAGATTAATCATCGGCAAAGTAAATCGATACTTCTTACCAATAATTTGGTTAAAAAATGAACATTTCATATTATGGCAATATATATCAGGAACCAAAAGGGTCCGTTTTTGTAGAAGATAGAAAAGGAACAAGTACAGCTAGCTAAAAAGAAGAATAAATTGTATATTGTTATAGCTTTTACAATAAAATTTGAACTGTTACAACAGGGAAAGTTGATGAACTGCGGCGGAGGGGGTAGCTGCGGAACTTGCATAGTCGAGGTATGAATTTTTTTCTTCTCATACCATTACCATATTAGCATGATCCATTCTTATTGTTATTATTATAGTGTAATAATCATCAGGATGAATATGTTCTCCTGGTCAGTTAGAATAACATATGTTACATATCCAAGAAATGAATATATTTTATATAGTAGTTTTTTGTTTACTACAAAGTAATACTTATTATATCTCTAATTGCTGCTGAACTTATAAATTGTTCTGTTGCAGATCATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAATACTGAACTAAAATATCTTAAGAAGGCATGTTCTCTGTCTCTCTCTTTGTACACACAATATTTGAGAAATGATATATGATTCGTAAAATGCTTAGCACATTATTGGAATCAATTTTAACACATTGTTTTCAAGGTTCCTAAGCCAATGAGAAGTATTATAATTTCTTTGAAAGTTGTTTGAAAGTATGGACTTCGAATTGAACTCATTTGCAAACCTATATATGATATAAGAAGTTTTCTTATTGTCAAATATTAATATATTATTGTTATATTAGTATTTCTACTCTTTCATCATTTTTTGCATCACCGTTCTTTAGCTCGTTTAACCTTTAGCTCAAATCAGTTAATATCAACATTTGCTTATCAAAATGTCCCTTTTATAGTGTGAGGGTGATATGATCCTAGATTTTGAAATTAATTAATCTTTTGAGCTTCTGCATTTGTAAACAGAAACCTGAATCTTGGAGGTTGGCTTGTCAAACTATTGTTGGGAACAAAGAAAACTCTGGCAAGGTATCTTTCAAAATAATTGTTCTTTCTACACTACTAGATAAATTTTGAAATACAAAATTATGCTATATCTCATGTTTAGTGTGGAAAATGTGGTGCTAGGAGTGATAGTTACATAAAAGTGCAGACCATATACCATGATCATGATTTACTCTTGTCACAGTACACCAAAATTTCTCACATTACTTGAGAATTGAGGATAGTTTATATAAACCACTCTCCTCAACTCATTACTCATTGAGATGTTTTTCAACTAAGAACAAATTTTGAGGGCTTACACAATACTCAATACGGACAATACCTTTGAAAAGTGGTGTCTTAGATTTGAGGTCAGAACATTGAAGCTAGAATAAGGACATACGCCAAATGCGATGGTTGATAGGCCTTTTAGCCCCATAGCCTAAAGGGGACTACTGTTCCGGTACACTTAACTAAGTTTGTTCCCGTGCGGCAGGCTTGAGTTCTAAACAATTTTCAATATATATATGGTTTCATAATCATTTGTGCCATACATCATCAAGCTTCATAATATACTAACTATATGCTGTCAAGTTGATTACAATTTACTGTAAGAAACAGTAACATATCTCTATCCTTATATGAATTAAGTCTGTTTACTTGACCCTTATGATATGATAATTGAAGCATGGAGAAAGTAAAATCCTTGTCTTTTTTACCTAATGCAAACGAAATTTAGTGACTGGGGAATATTCTTCAATTTGTATGGTTATTTACAAAAGAATAAACTAATGATTTATTCTAAAATGATCAAGACTGTTTTTCACAAGTACAATAGTTCTAATGGATTCATTTATATTTTCTATGATGGCTTTTAGGTTGTTGTTCAAAGGATTCCTCAATGGAAGAAGTAA

Protein sequence

>MS.gene60238.t1

MASMNNIFTPVPLTAGNRNPTIYFPRRRPNSVCFVANSPESPSPPEIELEFIGPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKDLLNERTNTELKYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQWKK