Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61435.t1 | XP_003620496.1 | 96.9 | 131 | 4 | 0 | 1 | 131 | 234 | 364 | 6.20E-69 | 270 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61435.t1 | Q54UF8 | 29.6 | 125 | 72 | 3 | 11 | 121 | 238 | 360 | 1.7e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61435.t1 | G7KNG0 | 96.9 | 131 | 4 | 0 | 1 | 131 | 234 | 364 | 4.4e-69 | 270.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene61435 | 0.812371 | 4.39E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene61435 | 0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene61435 | 0.804158 | 2.47E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene61435 | 0.835014 | 2.15E-56 | -1.69E-46 |
| MS.gene049230 | MS.gene61435 | 0.808755 | 2.65E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene61435 | 0.823703 | 1.20E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene61435 | 0.823093 | 1.67E-53 | -1.69E-46 |
| MS.gene049669 | MS.gene61435 | 0.805252 | 1.46E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene61435 | 0.824642 | 7.23E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene61435 | 0.832319 | 1.01E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene61435 | 0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene61435 | 0.847984 | 8.18E-60 | -1.69E-46 |
| MS.gene050605 | MS.gene61435 | 0.854881 | 9.16E-62 | -1.69E-46 |
| MS.gene050623 | MS.gene61435 | -0.837539 | 4.90E-57 | -1.69E-46 |
| MS.gene050680 | MS.gene61435 | 0.843898 | 1.06E-58 | -1.69E-46 |
| MS.gene050719 | MS.gene61435 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene61435 | 0.812552 | 4.00E-51 | -1.69E-46 |
| MS.gene050724 | MS.gene61435 | 0.807347 | 5.28E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene61435 | 0.826456 | 2.69E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene61435 | 0.837297 | 5.65E-57 | -1.69E-46 |
| MS.gene050987 | MS.gene61435 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene61435 | 0.811231 | 7.76E-51 | -1.69E-46 |
| MS.gene051349 | MS.gene61435 | 0.800902 | 1.16E-48 | -1.69E-46 |
| MS.gene051368 | MS.gene61435 | 0.808849 | 2.53E-50 | -1.69E-46 |
| MS.gene051370 | MS.gene61435 | 0.811448 | 6.97E-51 | -1.69E-46 |
| MS.gene051452 | MS.gene61435 | 0.837199 | 5.98E-57 | -1.69E-46 |
| MS.gene051535 | MS.gene61435 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene61435 | 0.836653 | 8.25E-57 | -1.69E-46 |
| MS.gene052012 | MS.gene61435 | 0.821063 | 4.93E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene61435 | 0.802038 | 6.78E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene61435 | 0.910773 | 1.29E-82 | -1.69E-46 |
| MS.gene05288 | MS.gene61435 | 0.805642 | 1.21E-49 | -1.69E-46 |
| MS.gene05289 | MS.gene61435 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene61435 | 0.811904 | 5.54E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene61435 | 0.820066 | 8.35E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene61435 | 0.838734 | 2.41E-57 | -1.69E-46 |
| MS.gene053216 | MS.gene61435 | 0.81087 | 9.30E-51 | -1.69E-46 |
| MS.gene053494 | MS.gene61435 | 0.823062 | 1.70E-53 | -1.69E-46 |
| MS.gene053584 | MS.gene61435 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene61435 | 0.825568 | 4.37E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene61435 | 0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene61435 | 0.809868 | 1.53E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene61435 | 0.828723 | 7.67E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene61435 | 0.820903 | 5.36E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene61435 | 0.839183 | 1.84E-57 | -1.69E-46 |
| MS.gene054658 | MS.gene61435 | 0.812987 | 3.22E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene61435 | 0.834356 | 3.14E-56 | -1.69E-46 |
| MS.gene05510 | MS.gene61435 | 0.897251 | 1.69E-76 | -1.69E-46 |
| MS.gene05517 | MS.gene61435 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene055222 | MS.gene61435 | 0.810616 | 1.05E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene61435 | 0.800467 | 1.42E-48 | -1.69E-46 |
| MS.gene055623 | MS.gene61435 | 0.853052 | 3.08E-61 | -1.69E-46 |
| MS.gene055701 | MS.gene61435 | 0.881937 | 1.58E-70 | -1.69E-46 |
| MS.gene055818 | MS.gene61435 | 0.80227 | 6.07E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene61435 | 0.814615 | 1.41E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene61435 | 0.841671 | 4.12E-58 | -1.69E-46 |
| MS.gene056760 | MS.gene61435 | 0.802088 | 6.62E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene61435 | 0.814808 | 1.28E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene61435 | 0.83914 | 1.89E-57 | -1.69E-46 |
| MS.gene057140 | MS.gene61435 | 0.814098 | 1.83E-51 | -1.69E-46 |
| MS.gene057194 | MS.gene61435 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene057394 | MS.gene61435 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene057395 | MS.gene61435 | 0.802347 | 5.86E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene61435 | 0.823265 | 1.52E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene61435 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene61435 | 0.811548 | 6.63E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene61435 | 0.811776 | 5.91E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene61435 | 0.843229 | 1.59E-58 | -1.69E-46 |
| MS.gene058399 | MS.gene61435 | 0.831371 | 1.73E-55 | -1.69E-46 |
| MS.gene058435 | MS.gene61435 | 0.823109 | 1.65E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene61435 | 0.822569 | 2.21E-53 | -1.69E-46 |
| MS.gene058595 | MS.gene61435 | 0.851487 | 8.60E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene61435 | 0.821197 | 4.59E-53 | -1.69E-46 |
| MS.gene059128 | MS.gene61435 | 0.82695 | 2.05E-54 | -1.69E-46 |
| MS.gene059161 | MS.gene61435 | 0.825575 | 4.35E-54 | -1.69E-46 |
| MS.gene059249 | MS.gene61435 | 0.821756 | 3.41E-53 | -1.69E-46 |
| MS.gene059317 | MS.gene61435 | 0.812036 | 5.19E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene61435 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene05979 | MS.gene61435 | 0.823017 | 1.74E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene61435 | 0.804232 | 2.38E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene61435 | 0.834939 | 2.24E-56 | -1.69E-46 |
| MS.gene060297 | MS.gene61435 | 0.803763 | 2.98E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene61435 | 0.819606 | 1.06E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene61435 | 0.845433 | 4.07E-59 | -1.69E-46 |
| MS.gene060572 | MS.gene61435 | 0.80129 | 9.66E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene61435 | 0.838993 | 2.07E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene61435 | 0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene060802 | MS.gene61435 | 0.843002 | 1.83E-58 | -1.69E-46 |
| MS.gene060803 | MS.gene61435 | 0.826947 | 2.05E-54 | -1.69E-46 |
| MS.gene060942 | MS.gene61435 | 0.804309 | 2.30E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene61435 | 0.851659 | 7.68E-61 | -1.69E-46 |
| MS.gene061002 | MS.gene61435 | 0.809774 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61435.t1 | MTR_6g086060 | 96.947 | 131 | 4 | 0 | 1 | 131 | 234 | 364 | 8.87e-91 | 269 |
| MS.gene61435.t1 | MTR_8g103740 | 80.916 | 131 | 24 | 1 | 1 | 131 | 45 | 174 | 3.47e-77 | 228 |
| MS.gene61435.t1 | MTR_8g103740 | 80.916 | 131 | 24 | 1 | 1 | 131 | 136 | 265 | 5.54e-76 | 228 |
| MS.gene61435.t1 | MTR_8g103740 | 80.916 | 131 | 24 | 1 | 1 | 131 | 230 | 359 | 3.43e-74 | 227 |
| MS.gene61435.t1 | MTR_1g046480 | 54.331 | 127 | 57 | 1 | 5 | 131 | 252 | 377 | 8.22e-43 | 146 |
| MS.gene61435.t1 | MTR_2g022060 | 27.007 | 137 | 81 | 1 | 4 | 121 | 228 | 364 | 7.71e-14 | 67.4 |
| MS.gene61435.t1 | MTR_7g057720 | 32.836 | 134 | 74 | 4 | 4 | 121 | 232 | 365 | 9.10e-14 | 67.4 |
| MS.gene61435.t1 | MTR_7g057720 | 32.836 | 134 | 74 | 4 | 4 | 121 | 249 | 382 | 1.13e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61435.t1 | AT3G24460 | 69.403 | 134 | 38 | 1 | 1 | 131 | 236 | 369 | 3.16e-65 | 204 |
| MS.gene61435.t1 | AT3G24460 | 69.403 | 134 | 38 | 1 | 1 | 131 | 236 | 369 | 3.16e-65 | 204 |
| MS.gene61435.t1 | AT4G13345 | 69.466 | 131 | 39 | 1 | 1 | 131 | 229 | 358 | 7.84e-65 | 202 |
| MS.gene61435.t1 | AT4G13345 | 69.466 | 131 | 39 | 1 | 1 | 131 | 229 | 358 | 1.01e-64 | 202 |
| MS.gene61435.t1 | AT4G13345 | 67.939 | 131 | 41 | 1 | 1 | 131 | 229 | 358 | 1.20e-63 | 199 |
| MS.gene61435.t1 | AT4G13345 | 67.939 | 131 | 41 | 1 | 1 | 131 | 229 | 358 | 1.20e-63 | 199 |
| MS.gene61435.t1 | AT4G13345 | 69.291 | 127 | 38 | 1 | 1 | 127 | 229 | 354 | 1.94e-63 | 197 |
| MS.gene61435.t1 | AT2G33205 | 57.576 | 132 | 53 | 3 | 1 | 131 | 246 | 375 | 5.18e-45 | 152 |
| MS.gene61435.t1 | AT2G33205 | 55.639 | 133 | 56 | 3 | 1 | 131 | 136 | 267 | 7.26e-45 | 149 |
| MS.gene61435.t1 | AT2G33205 | 55.639 | 133 | 56 | 3 | 1 | 131 | 151 | 282 | 7.49e-45 | 149 |
| MS.gene61435.t1 | AT2G33205 | 55.639 | 133 | 56 | 3 | 1 | 131 | 246 | 377 | 7.05e-44 | 148 |
| MS.gene61435.t1 | AT2G33205 | 55.639 | 133 | 56 | 3 | 1 | 131 | 246 | 377 | 1.13e-43 | 148 |
| MS.gene61435.t1 | AT2G33205 | 55.639 | 133 | 56 | 3 | 1 | 131 | 246 | 377 | 1.13e-43 | 148 |
| MS.gene61435.t1 | AT2G33205 | 57.937 | 126 | 50 | 3 | 1 | 124 | 246 | 370 | 1.48e-43 | 147 |
| MS.gene61435.t1 | AT2G33205 | 55.422 | 83 | 35 | 2 | 1 | 82 | 246 | 327 | 1.94e-21 | 88.2 |
| MS.gene61435.t1 | AT2G33205 | 55.422 | 83 | 35 | 2 | 1 | 82 | 246 | 327 | 1.94e-21 | 88.2 |
| MS.gene61435.t1 | AT4G13345 | 64.912 | 57 | 20 | 0 | 1 | 57 | 229 | 285 | 2.22e-21 | 87.4 |
| MS.gene61435.t1 | AT4G13345 | 64.912 | 57 | 20 | 0 | 1 | 57 | 229 | 285 | 2.22e-21 | 87.4 |
| MS.gene61435.t1 | AT3G06170 | 30.216 | 139 | 71 | 3 | 4 | 120 | 229 | 363 | 7.04e-13 | 64.7 |
| MS.gene61435.t1 | AT1G16180 | 30.216 | 139 | 73 | 3 | 4 | 121 | 232 | 367 | 1.58e-12 | 63.9 |
| MS.gene61435.t1 | AT1G16180 | 30.216 | 139 | 73 | 3 | 4 | 121 | 232 | 367 | 1.58e-12 | 63.9 |
Find 22 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGATTCTAAATGCTTTC+AGG | 0.153702 | 6.3:-79521035 | MS.gene61435:intron |
| TGTTGGCAGAGCTTTGTTAT+TGG | 0.269454 | 6.3:-79521094 | MS.gene61435:intron |
| CTGATGCATTGATCTCCTTC+TGG | 0.269494 | 6.3:+79521846 | None:intergenic |
| TATATGTTGTCTTCCTTTGT+TGG | 0.308105 | 6.3:-79522547 | MS.gene61435:CDS |
| GATGATGTTCCATATGGATA+TGG | 0.339974 | 6.3:-79520895 | MS.gene61435:CDS |
| TACTTTGCAATGCTATTGAT+TGG | 0.370812 | 6.3:-79520838 | MS.gene61435:CDS |
| TGTCTTGCCTTCCATACAAT+TGG | 0.400690 | 6.3:+79519889 | None:intergenic |
| GGAACATCATCTTCTTCTGC+TGG | 0.439187 | 6.3:+79520907 | None:intergenic |
| ACATATAGCCCCATCAATCC+TGG | 0.458090 | 6.3:+79522563 | None:intergenic |
| GAAGAAGATGATGTTCCATA+TGG | 0.466677 | 6.3:-79520901 | MS.gene61435:CDS |
| TGCTGATAGCTCCAATTGTA+TGG | 0.471218 | 6.3:-79519900 | MS.gene61435:CDS |
| GATCAATGCATCAGAACATC+AGG | 0.477126 | 6.3:-79521837 | MS.gene61435:CDS |
| TTGCAATGCTATTGATTGGA+TGG | 0.487844 | 6.3:-79520834 | MS.gene61435:CDS |
| CATTAATTTGCAGCTAAGGA+AGG | 0.506153 | 6.3:-79520938 | MS.gene61435:intron |
| TTTGTTGGTGTGCAATCAGA+AGG | 0.521888 | 6.3:-79522532 | MS.gene61435:intron |
| ATTAATTTGCAGCTAAGGAA+GGG | 0.543167 | 6.3:-79520937 | MS.gene61435:intron |
| TTCTGATTGCACACCAACAA+AGG | 0.551050 | 6.3:+79522534 | None:intergenic |
| GATAGCTCCAATTGTATGGA+AGG | 0.571406 | 6.3:-79519896 | MS.gene61435:CDS |
| TTGTGTCAATAGGTAAATGG+TGG | 0.592494 | 6.3:-79522596 | MS.gene61435:intron |
| TGCAAAGTACATAGCTCCTG+TGG | 0.637719 | 6.3:+79520852 | None:intergenic |
| GCACTGTAACCAAAACAGAC+TGG | 0.637874 | 6.3:-79521815 | MS.gene61435:CDS |
| TGTGCATGCAGTGAACCAGA+AGG | 0.646240 | 6.3:-79521861 | MS.gene61435:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAAATGCAAAAAA+AGG | + | chr6.3:79520118-79520137 | None:intergenic | 10.0% |
| !! | ATATTCAATAGAAATAAAAA+GGG | + | chr6.3:79520718-79520737 | None:intergenic | 10.0% |
| !! | TATATTCAATAGAAATAAAA+AGG | + | chr6.3:79520719-79520738 | None:intergenic | 10.0% |
| !!! | GTATGAATTTTTTAATTTAT+TGG | + | chr6.3:79521150-79521169 | None:intergenic | 10.0% |
| !!! | AAAATTGGTTTTGATTAAAT+TGG | - | chr6.3:79520194-79520213 | MS.gene61435:intron | 15.0% |
| !!! | ATTTTTATCGATTTATGTTA+GGG | - | chr6.3:79520261-79520280 | MS.gene61435:intron | 15.0% |
| !!! | CTTAAATAAAACATACTTTT+GGG | + | chr6.3:79519906-79519925 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTTTTCCTTTTTT+CGG | - | chr6.3:79522271-79522290 | MS.gene61435:intron | 15.0% |
| !!! | TCTTAAATAAAACATACTTT+TGG | + | chr6.3:79519907-79519926 | None:intergenic | 15.0% |
| !!! | TTATGTTTGTTTATGTATTT+TGG | - | chr6.3:79520904-79520923 | MS.gene61435:CDS | 15.0% |
| !!! | TTCATTTTTTAAACTACTAT+TGG | - | chr6.3:79522587-79522606 | MS.gene61435:CDS | 15.0% |
| !!! | TTTTCATATTAAAAATGTCT+CGG | - | chr6.3:79520534-79520553 | MS.gene61435:intron | 15.0% |
| !! | ACTTTCGAAAATCAAATTTA+AGG | + | chr6.3:79520403-79520422 | None:intergenic | 20.0% |
| !! | TCATTGGAAACATATTTATT+GGG | + | chr6.3:79521954-79521973 | None:intergenic | 20.0% |
| !! | TTCATTGGAAACATATTTAT+TGG | + | chr6.3:79521955-79521974 | None:intergenic | 20.0% |
| !! | TTTCATATTAAAAATGTCTC+GGG | - | chr6.3:79520535-79520554 | MS.gene61435:intron | 20.0% |
| !!! | AAGAACAGCTATAAATTTTT+TGG | - | chr6.3:79522157-79522176 | MS.gene61435:intron | 20.0% |
| !!! | ACATATTTTTCTAACTAGTT+TGG | - | chr6.3:79520944-79520963 | MS.gene61435:intron | 20.0% |
| !!! | CTTTTTTTTTTTGTGTCAAT+AGG | - | chr6.3:79520010-79520029 | MS.gene61435:intron | 20.0% |
| !!! | GATTTTTATCGATTTATGTT+AGG | - | chr6.3:79520260-79520279 | MS.gene61435:intron | 20.0% |
| !!! | TTCTTATCATTTTTACAGTA+TGG | - | chr6.3:79522692-79522711 | MS.gene61435:intron | 20.0% |
| !!! | TTTTAGTAGAATTGACTTTA+GGG | - | chr6.3:79520314-79520333 | MS.gene61435:intron | 20.0% |
| ! | AAATTCATACAAACCAATTG+TGG | - | chr6.3:79521160-79521179 | MS.gene61435:intron | 25.0% |
| ! | AGAACAATAGATCTTATGAA+AGG | + | chr6.3:79522652-79522671 | None:intergenic | 25.0% |
| ! | ATTATTATGATGTCACAAGA+TGG | + | chr6.3:79521016-79521035 | None:intergenic | 25.0% |
| ! | CAAAAGACAAAAAGAAAACA+TGG | + | chr6.3:79521397-79521416 | None:intergenic | 25.0% |
| ! | CAAAGAAAAGAAAAACAAGT+GGG | - | chr6.3:79521889-79521908 | MS.gene61435:intron | 25.0% |
| ! | CATCACAAGTTAGAAATATT+AGG | - | chr6.3:79520291-79520310 | MS.gene61435:intron | 25.0% |
| ! | GAAAATTTCCCTAGAAAAAA+AGG | + | chr6.3:79519983-79520002 | None:intergenic | 25.0% |
| ! | TAATCTATTTAGCCTATGTT+AGG | - | chr6.3:79522338-79522357 | MS.gene61435:intron | 25.0% |
| ! | TATCTTACAGAAAATCATGA+TGG | + | chr6.3:79522396-79522415 | None:intergenic | 25.0% |
| ! | TCAAAGAAAAGAAAAACAAG+TGG | - | chr6.3:79521888-79521907 | MS.gene61435:intron | 25.0% |
| ! | TCACATGAAAATCATATGAT+GGG | + | chr6.3:79519959-79519978 | None:intergenic | 25.0% |
| ! | TCATTTACTATGTGATAAGA+TGG | - | chr6.3:79521315-79521334 | MS.gene61435:intron | 25.0% |
| ! | TTCACATGAAAATCATATGA+TGG | + | chr6.3:79519960-79519979 | None:intergenic | 25.0% |
| !! | TTTTTGTGTCAATAGGTAAA+TGG | - | chr6.3:79520017-79520036 | MS.gene61435:intron | 25.0% |
| !!! | ATATCATTAATTTGCAGCTA+AGG | - | chr6.3:79521674-79521693 | MS.gene61435:intron | 25.0% |
| !!! | GTTTTAGTAGAATTGACTTT+AGG | - | chr6.3:79520313-79520332 | MS.gene61435:intron | 25.0% |
| AAAGATTCTAAGCATGTGTT+TGG | + | chr6.3:79520589-79520608 | None:intergenic | 30.0% | |
| ACATAAGCTTAAAGTGTGTT+TGG | - | chr6.3:79520439-79520458 | MS.gene61435:intron | 30.0% | |
| ATATGTTCTCAAGTAACAAG+AGG | + | chr6.3:79520930-79520949 | None:intergenic | 30.0% | |
| ATATGTTTCCAATGAAGCTT+AGG | - | chr6.3:79521959-79521978 | MS.gene61435:intron | 30.0% | |
| ATCATATTGCTTCCGAAAAA+AGG | + | chr6.3:79522286-79522305 | None:intergenic | 30.0% | |
| CAGAATAGTAAATGAATGGT+TGG | - | chr6.3:79522232-79522251 | MS.gene61435:intron | 30.0% | |
| CATAGATTCTAAATGCTTTC+AGG | - | chr6.3:79521581-79521600 | MS.gene61435:intron | 30.0% | |
| CATCATTCAATGAGAAAGTA+TGG | - | chr6.3:79521811-79521830 | MS.gene61435:CDS | 30.0% | |
| TACTTTGCAATGCTATTGAT+TGG | - | chr6.3:79521778-79521797 | MS.gene61435:intron | 30.0% | |
| TATATGTTGTCTTCCTTTGT+TGG | - | chr6.3:79520069-79520088 | MS.gene61435:intron | 30.0% | |
| TGGAAAAAACCATATCCATA+TGG | + | chr6.3:79521733-79521752 | None:intergenic | 30.0% | |
| TTAAGCAATGTTGTCAAAAC+TGG | + | chr6.3:79521294-79521313 | None:intergenic | 30.0% | |
| TTCCATCTTGTTCATGTTAT+GGG | - | chr6.3:79521834-79521853 | MS.gene61435:CDS | 30.0% | |
| TTGTTCTAATGCACATCTAA+TGG | - | chr6.3:79522665-79522684 | MS.gene61435:intron | 30.0% | |
| TTTAGCATGTATTTAGTGTG+CGG | - | chr6.3:79520166-79520185 | MS.gene61435:intron | 30.0% | |
| ! | AAATCATATGATGGGAGAAA+AGG | + | chr6.3:79519951-79519970 | None:intergenic | 30.0% |
| ! | CTTAGAATCTTTTCTCCAAA+AGG | - | chr6.3:79520597-79520616 | MS.gene61435:intron | 30.0% |
| ! | GTTATTGCAACATTTTCAAC+AGG | - | chr6.3:79521558-79521577 | MS.gene61435:intron | 30.0% |
| !! | ATTAATTTGCAGCTAAGGAA+GGG | - | chr6.3:79521679-79521698 | MS.gene61435:intron | 30.0% |
| !! | ATTTTAAGTCCAGGATTGAT+GGG | - | chr6.3:79520044-79520063 | MS.gene61435:intron | 30.0% |
| !!! | CATGTGAACCTTTTTTTCTA+GGG | - | chr6.3:79519972-79519991 | MS.gene61435:intron | 30.0% |
| !!! | TCATGTGAACCTTTTTTTCT+AGG | - | chr6.3:79519971-79519990 | MS.gene61435:intron | 30.0% |
| AAACCAATTGTGGTTCAACT+TGG | - | chr6.3:79521170-79521189 | MS.gene61435:intron | 35.0% | |
| AACACTACTGTCTTGAATGT+TGG | - | chr6.3:79521481-79521500 | MS.gene61435:intron | 35.0% | |
| AACTTAACCAGAGAAGAAAC+CGG | - | chr6.3:79521063-79521082 | MS.gene61435:CDS | 35.0% | |
| ACAAAACTGTGAATCAACTG+TGG | - | chr6.3:79521207-79521226 | MS.gene61435:intron | 35.0% | |
| AGAATACACCTAAGCTTCAT+TGG | + | chr6.3:79521970-79521989 | None:intergenic | 35.0% | |
| ATTATGATGTCACAAGATGG+TGG | + | chr6.3:79521013-79521032 | None:intergenic | 35.0% | |
| ATTTGATGTCCACTACATGT+CGG | - | chr6.3:79522521-79522540 | MS.gene61435:intron | 35.0% | |
| CAAAAATTTGATTGCGAACG+TGG | - | chr6.3:79520561-79520580 | MS.gene61435:intron | 35.0% | |
| CATGGTTCAATTCGTCTAAT+CGG | - | chr6.3:79521100-79521119 | MS.gene61435:intron | 35.0% | |
| CATGTTATGGGCATCATATT+TGG | - | chr6.3:79521846-79521865 | MS.gene61435:CDS | 35.0% | |
| GAAGAAGATGATGTTCCATA+TGG | - | chr6.3:79521715-79521734 | MS.gene61435:intron | 35.0% | |
| GATGATGTTCCATATGGATA+TGG | - | chr6.3:79521721-79521740 | MS.gene61435:intron | 35.0% | |
| GGGTCAGAATAGTAAATGAA+TGG | - | chr6.3:79522228-79522247 | MS.gene61435:intron | 35.0% | |
| GTTCCATCTTGTTCATGTTA+TGG | - | chr6.3:79521833-79521852 | MS.gene61435:CDS | 35.0% | |
| TAGTGTGCGGTGATAAAAAT+TGG | - | chr6.3:79520179-79520198 | MS.gene61435:intron | 35.0% | |
| TATAAGACATGATTGCATGC+AGG | + | chr6.3:79520653-79520672 | None:intergenic | 35.0% | |
| TCGATTCAACTGGTTGAATT+AGG | + | chr6.3:79521261-79521280 | None:intergenic | 35.0% | |
| TCGTCTAATCGGTTAAACTA+GGG | - | chr6.3:79521111-79521130 | MS.gene61435:intron | 35.0% | |
| TGAAGCTTAGGTGTATTCTT+TGG | - | chr6.3:79521971-79521990 | MS.gene61435:intron | 35.0% | |
| TGACATGTGACAATAACTGT+TGG | - | chr6.3:79521505-79521524 | MS.gene61435:intron | 35.0% | |
| TGGAAATATTGTTCTGCAGA+TGG | - | chr6.3:79522177-79522196 | MS.gene61435:intron | 35.0% | |
| TTAGCCTATGTTAGGTATCA+CGG | - | chr6.3:79522346-79522365 | MS.gene61435:intron | 35.0% | |
| TTCGTCTAATCGGTTAAACT+AGG | - | chr6.3:79521110-79521129 | MS.gene61435:intron | 35.0% | |
| TTGTAGCTTCTACGAAATCA+CGG | - | chr6.3:79522420-79522439 | MS.gene61435:intron | 35.0% | |
| TTGTGTCAATAGGTAAATGG+TGG | - | chr6.3:79520020-79520039 | MS.gene61435:intron | 35.0% | |
| ! | ATTGCATCCATAGTTCCTTT+TGG | + | chr6.3:79520615-79520634 | None:intergenic | 35.0% |
| ! | CTTTTCTCCAAAAGGAACTA+TGG | - | chr6.3:79520605-79520624 | MS.gene61435:intron | 35.0% |
| ! | TTGCAATGCTATTGATTGGA+TGG | - | chr6.3:79521782-79521801 | MS.gene61435:intron | 35.0% |
| !! | AATCAACTAGTCTTCTAGGT+TGG | + | chr6.3:79521238-79521257 | None:intergenic | 35.0% |
| !! | AGTAGAATTGACTTTAGGGT+TGG | - | chr6.3:79520318-79520337 | MS.gene61435:intron | 35.0% |
| !! | CATTAATTTGCAGCTAAGGA+AGG | - | chr6.3:79521678-79521697 | MS.gene61435:intron | 35.0% |
| !! | CATTTTAAGTCCAGGATTGA+TGG | - | chr6.3:79520043-79520062 | MS.gene61435:intron | 35.0% |
| !! | TAGGAATCAACTAGTCTTCT+AGG | + | chr6.3:79521242-79521261 | None:intergenic | 35.0% |
| !! | TTTTAAGTCCAGGATTGATG+GGG | - | chr6.3:79520045-79520064 | MS.gene61435:intron | 35.0% |
| !!! | TTCCATTTTGTTTTTGCCAC+AGG | - | chr6.3:79521748-79521767 | MS.gene61435:intron | 35.0% |
| ATTCAACCAGTTGAATCGAC+CGG | - | chr6.3:79521262-79521281 | MS.gene61435:intron | 40.0% | |
| CGATTAGACGAATTGAACCA+TGG | + | chr6.3:79521102-79521121 | None:intergenic | 40.0% | |
| CTCCTGTGGCAAAAACAAAA+TGG | + | chr6.3:79521753-79521772 | None:intergenic | 40.0% | |
| GATACCAAACACACACTTAG+TGG | - | chr6.3:79522476-79522495 | MS.gene61435:intron | 40.0% | |
| GATAGCTCCAATTGTATGGA+AGG | - | chr6.3:79522720-79522739 | MS.gene61435:intron | 40.0% | |
| GATCAATGCATCAGAACATC+AGG | - | chr6.3:79520779-79520798 | MS.gene61435:intron | 40.0% | |
| TGCCCATAACATGAACAAGA+TGG | + | chr6.3:79521839-79521858 | None:intergenic | 40.0% | |
| TGCTGATAGCTCCAATTGTA+TGG | - | chr6.3:79522716-79522735 | MS.gene61435:intron | 40.0% | |
| TGTCTTGCCTTCCATACAAT+TGG | + | chr6.3:79522730-79522749 | None:intergenic | 40.0% | |
| TTCTGATTGCACACCAACAA+AGG | + | chr6.3:79520085-79520104 | None:intergenic | 40.0% | |
| TTTGTTGGTGTGCAATCAGA+AGG | - | chr6.3:79520084-79520103 | MS.gene61435:intron | 40.0% | |
| ! | GAACCAAGTTGAACCACAAT+TGG | + | chr6.3:79521176-79521195 | None:intergenic | 40.0% |
| ! | GATGTTTTGCCAGTCTGTTT+TGG | + | chr6.3:79520813-79520832 | None:intergenic | 40.0% |
| !! | AATGGTGGCATTTTAAGTCC+AGG | - | chr6.3:79520035-79520054 | MS.gene61435:intron | 40.0% |
| !! | TGTTGGCAGAGCTTTGTTAT+TGG | - | chr6.3:79521522-79521541 | MS.gene61435:intron | 40.0% |
| ACATATAGCCCCATCAATCC+TGG | + | chr6.3:79520056-79520075 | None:intergenic | 45.0% | |
| CCTATGTTAGGTATCACGGT+GGG | - | chr6.3:79522350-79522369 | MS.gene61435:intron | 45.0% | |
| GCACTGTAACCAAAACAGAC+TGG | - | chr6.3:79520801-79520820 | MS.gene61435:intron | 45.0% | |
| GGAACATCATCTTCTTCTGC+TGG | + | chr6.3:79521712-79521731 | None:intergenic | 45.0% | |
| GTGTGTGTTTGGTATCACAG+TGG | + | chr6.3:79522472-79522491 | None:intergenic | 45.0% | |
| GTTGCCACTAAGTGTGTGTT+TGG | + | chr6.3:79522483-79522502 | None:intergenic | 45.0% | |
| TACTATTCTGACCCAAGCAC+TGG | + | chr6.3:79522222-79522241 | None:intergenic | 45.0% | |
| TGCAAAGTACATAGCTCCTG+TGG | + | chr6.3:79521767-79521786 | None:intergenic | 45.0% | |
| TGCAGATGGTCACTTGATGT+GGG | - | chr6.3:79522191-79522210 | MS.gene61435:intron | 45.0% | |
| TTGTCAAAACTGGACCGAAC+CGG | + | chr6.3:79521284-79521303 | None:intergenic | 45.0% | |
| ! | CTGATGCATTGATCTCCTTC+TGG | + | chr6.3:79520773-79520792 | None:intergenic | 45.0% |
| ACCAGTTGAATCGACCGGTT+CGG | - | chr6.3:79521267-79521286 | MS.gene61435:intron | 50.0% | |
| CCCACCGTGATACCTAACAT+AGG | + | chr6.3:79522353-79522372 | None:intergenic | 50.0% | |
| CTGCAGATGGTCACTTGATG+TGG | - | chr6.3:79522190-79522209 | MS.gene61435:intron | 50.0% | |
| GCCTATGTTAGGTATCACGG+TGG | - | chr6.3:79522349-79522368 | MS.gene61435:intron | 50.0% | |
| TGTGCATGCAGTGAACCAGA+AGG | - | chr6.3:79520755-79520774 | MS.gene61435:intron | 50.0% | |
| !! | AGTCTCACCGGTTTCTTCTC+TGG | + | chr6.3:79521073-79521092 | None:intergenic | 50.0% |
| CCATGGCTCAGAAGTCTCAC+CGG | + | chr6.3:79521085-79521104 | None:intergenic | 55.0% | |
| CGTCTCACACCGACATGTAG+TGG | + | chr6.3:79522533-79522552 | None:intergenic | 55.0% | |
| GATGGTCACTTGATGTGGGC+TGG | - | chr6.3:79522195-79522214 | MS.gene61435:intron | 55.0% | |
| ! | ACCGAACCGGTCGATTCAAC+TGG | + | chr6.3:79521271-79521290 | None:intergenic | 55.0% |
| CCGGTGAGACTTCTGAGCCA+TGG | - | chr6.3:79521082-79521101 | MS.gene61435:CDS | 60.0% | |
| !! | ATGTGGGCTGGACCAGTGCT+TGG | - | chr6.3:79522207-79522226 | MS.gene61435:intron | 60.0% |
| !! | TGTGGGCTGGACCAGTGCTT+GGG | - | chr6.3:79522208-79522227 | MS.gene61435:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 79519883 | 79522755 | 79519883 | ID=MS.gene61435 |
| chr6.3 | mRNA | 79519883 | 79522755 | 79519883 | ID=MS.gene61435.t1;Parent=MS.gene61435 |
| chr6.3 | exon | 79522729 | 79522755 | 79522729 | ID=MS.gene61435.t1.exon1;Parent=MS.gene61435.t1 |
| chr6.3 | CDS | 79522729 | 79522755 | 79522729 | ID=cds.MS.gene61435.t1;Parent=MS.gene61435.t1 |
| chr6.3 | exon | 79522533 | 79522606 | 79522533 | ID=MS.gene61435.t1.exon2;Parent=MS.gene61435.t1 |
| chr6.3 | CDS | 79522533 | 79522606 | 79522533 | ID=cds.MS.gene61435.t1;Parent=MS.gene61435.t1 |
| chr6.3 | exon | 79521803 | 79521872 | 79521803 | ID=MS.gene61435.t1.exon3;Parent=MS.gene61435.t1 |
| chr6.3 | CDS | 79521803 | 79521872 | 79521803 | ID=cds.MS.gene61435.t1;Parent=MS.gene61435.t1 |
| chr6.3 | exon | 79521036 | 79521107 | 79521036 | ID=MS.gene61435.t1.exon4;Parent=MS.gene61435.t1 |
| chr6.3 | CDS | 79521036 | 79521107 | 79521036 | ID=cds.MS.gene61435.t1;Parent=MS.gene61435.t1 |
| chr6.3 | exon | 79520811 | 79520947 | 79520811 | ID=MS.gene61435.t1.exon5;Parent=MS.gene61435.t1 |
| chr6.3 | CDS | 79520811 | 79520947 | 79520811 | ID=cds.MS.gene61435.t1;Parent=MS.gene61435.t1 |
| chr6.3 | exon | 79519883 | 79519928 | 79519883 | ID=MS.gene61435.t1.exon6;Parent=MS.gene61435.t1 |
| chr6.3 | CDS | 79519883 | 79519928 | 79519883 | ID=cds.MS.gene61435.t1;Parent=MS.gene61435.t1 |
| Gene Sequence |
| Protein sequence |
