Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66702.t1 | XP_003606096.1 | 98.4 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 2.00E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66702.t1 | Q96KR6 | 31.4 | 102 | 66 | 1 | 85 | 182 | 80 | 181 | 5.3e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66702.t1 | G7JH97 | 98.4 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.5e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene66702 | 0.811621 | 6.39E-51 | -1.69E-46 |
| MS.gene049170 | MS.gene66702 | 0.824753 | 6.80E-54 | -1.69E-46 |
| MS.gene049284 | MS.gene66702 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene049488 | MS.gene66702 | 0.837183 | 6.04E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene66702 | 0.812323 | 4.49E-51 | -1.69E-46 |
| MS.gene049993 | MS.gene66702 | 0.841666 | 4.14E-58 | -1.69E-46 |
| MS.gene050060 | MS.gene66702 | 0.831169 | 1.94E-55 | -1.69E-46 |
| MS.gene050133 | MS.gene66702 | -0.833937 | 4.00E-56 | -1.69E-46 |
| MS.gene050315 | MS.gene66702 | 0.836657 | 8.23E-57 | -1.69E-46 |
| MS.gene050397 | MS.gene66702 | 0.815758 | 7.85E-52 | -1.69E-46 |
| MS.gene050400 | MS.gene66702 | 0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene66702 | 0.805249 | 1.46E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene66702 | 0.843885 | 1.06E-58 | -1.69E-46 |
| MS.gene050426 | MS.gene66702 | -0.904252 | 1.49E-79 | -1.69E-46 |
| MS.gene050464 | MS.gene66702 | 0.842644 | 2.28E-58 | -1.69E-46 |
| MS.gene050529 | MS.gene66702 | 0.846917 | 1.61E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene66702 | 0.864912 | 8.64E-65 | -1.69E-46 |
| MS.gene050812 | MS.gene66702 | 0.820141 | 8.02E-53 | -1.69E-46 |
| MS.gene05081 | MS.gene66702 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene66702 | 0.811503 | 6.78E-51 | -1.69E-46 |
| MS.gene051158 | MS.gene66702 | -0.810033 | 1.41E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene66702 | 0.819511 | 1.12E-52 | -1.69E-46 |
| MS.gene051208 | MS.gene66702 | 0.838793 | 2.33E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene66702 | 0.890607 | 8.46E-74 | -1.69E-46 |
| MS.gene051552 | MS.gene66702 | -0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene66702 | 0.880942 | 3.62E-70 | -1.69E-46 |
| MS.gene051588 | MS.gene66702 | 0.819666 | 1.03E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene66702 | 0.828537 | 8.51E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene66702 | -0.88603 | 4.87E-72 | -1.69E-46 |
| MS.gene052077 | MS.gene66702 | 0.853544 | 2.23E-61 | -1.69E-46 |
| MS.gene052128 | MS.gene66702 | -0.830762 | 2.45E-55 | -1.69E-46 |
| MS.gene052134 | MS.gene66702 | 0.892095 | 2.18E-74 | -1.69E-46 |
| MS.gene052135 | MS.gene66702 | 0.890771 | 7.29E-74 | -1.69E-46 |
| MS.gene052136 | MS.gene66702 | 0.83079 | 2.41E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene66702 | 0.824118 | 9.60E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene66702 | 0.87154 | 6.32E-67 | -1.69E-46 |
| MS.gene052310 | MS.gene66702 | 0.824529 | 7.68E-54 | -1.69E-46 |
| MS.gene052322 | MS.gene66702 | 0.820506 | 6.62E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene66702 | 0.859486 | 4.00E-63 | -1.69E-46 |
| MS.gene052414 | MS.gene66702 | 0.833114 | 6.42E-56 | -1.69E-46 |
| MS.gene052469 | MS.gene66702 | 0.83442 | 3.03E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene66702 | 0.866241 | 3.29E-65 | -1.69E-46 |
| MS.gene052485 | MS.gene66702 | 0.810056 | 1.39E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene66702 | 0.827734 | 1.33E-54 | -1.69E-46 |
| MS.gene052505 | MS.gene66702 | 0.842063 | 3.25E-58 | -1.69E-46 |
| MS.gene052589 | MS.gene66702 | 0.840262 | 9.66E-58 | -1.69E-46 |
| MS.gene052590 | MS.gene66702 | 0.826424 | 2.73E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene66702 | 0.854712 | 1.03E-61 | -1.69E-46 |
| MS.gene053103 | MS.gene66702 | 0.80891 | 2.46E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene66702 | 0.911063 | 9.28E-83 | -1.69E-46 |
| MS.gene053557 | MS.gene66702 | 0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene053579 | MS.gene66702 | 0.802395 | 5.73E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene66702 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene66702 | 0.805209 | 1.49E-49 | -1.69E-46 |
| MS.gene053971 | MS.gene66702 | 0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene054102 | MS.gene66702 | 0.895324 | 1.07E-75 | -1.69E-46 |
| MS.gene054107 | MS.gene66702 | 0.830304 | 3.17E-55 | -1.69E-46 |
| MS.gene054110 | MS.gene66702 | 0.861088 | 1.31E-63 | -1.69E-46 |
| MS.gene05412 | MS.gene66702 | 0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene05413 | MS.gene66702 | 0.864738 | 9.80E-65 | -1.69E-46 |
| MS.gene054183 | MS.gene66702 | 0.859403 | 4.24E-63 | -1.69E-46 |
| MS.gene054349 | MS.gene66702 | 0.826229 | 3.04E-54 | -1.69E-46 |
| MS.gene054719 | MS.gene66702 | 0.861372 | 1.07E-63 | -1.69E-46 |
| MS.gene054742 | MS.gene66702 | -0.811419 | 7.07E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene66702 | -0.804823 | 1.80E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene66702 | 0.829449 | 5.11E-55 | -1.69E-46 |
| MS.gene054920 | MS.gene66702 | 0.805391 | 1.37E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene66702 | 0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene66702 | 0.856187 | 3.81E-62 | -1.69E-46 |
| MS.gene055369 | MS.gene66702 | 0.837908 | 3.94E-57 | -1.69E-46 |
| MS.gene055370 | MS.gene66702 | 0.87319 | 1.78E-67 | -1.69E-46 |
| MS.gene055539 | MS.gene66702 | 0.848557 | 5.68E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene66702 | 0.902884 | 6.14E-79 | -1.69E-46 |
| MS.gene05556 | MS.gene66702 | 0.835937 | 1.25E-56 | -1.69E-46 |
| MS.gene055601 | MS.gene66702 | -0.819596 | 1.07E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene66702 | 0.812974 | 3.24E-51 | -1.69E-46 |
| MS.gene056233 | MS.gene66702 | 0.812806 | 3.52E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene66702 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene056351 | MS.gene66702 | 0.815931 | 7.18E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene66702 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene056451 | MS.gene66702 | 0.822016 | 2.97E-53 | -1.69E-46 |
| MS.gene056497 | MS.gene66702 | 0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene056514 | MS.gene66702 | 0.855307 | 6.89E-62 | -1.69E-46 |
| MS.gene056633 | MS.gene66702 | 0.878517 | 2.63E-69 | -1.69E-46 |
| MS.gene056659 | MS.gene66702 | 0.839075 | 1.97E-57 | -1.69E-46 |
| MS.gene056664 | MS.gene66702 | 0.808324 | 3.27E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene66702 | 0.856108 | 4.02E-62 | -1.69E-46 |
| MS.gene056782 | MS.gene66702 | 0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene66702 | 0.801724 | 7.87E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene66702 | -0.855178 | 7.51E-62 | -1.69E-46 |
| MS.gene056979 | MS.gene66702 | 0.823121 | 1.64E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene66702 | 0.850933 | 1.23E-60 | -1.69E-46 |
| MS.gene057048 | MS.gene66702 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene66702 | 0.865909 | 4.19E-65 | -1.69E-46 |
| MS.gene057196 | MS.gene66702 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene057310 | MS.gene66702 | 0.832007 | 1.21E-55 | -1.69E-46 |
| MS.gene057396 | MS.gene66702 | 0.844532 | 7.13E-59 | -1.69E-46 |
| MS.gene057476 | MS.gene66702 | 0.803 | 4.30E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene66702 | 0.843523 | 1.33E-58 | -1.69E-46 |
| MS.gene057823 | MS.gene66702 | 0.839637 | 1.41E-57 | -1.69E-46 |
| MS.gene057825 | MS.gene66702 | 0.847352 | 1.22E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene66702 | 0.818261 | 2.15E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene66702 | 0.819673 | 1.03E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene66702 | 0.851489 | 8.59E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene66702 | 0.861935 | 7.23E-64 | -1.69E-46 |
| MS.gene058276 | MS.gene66702 | 0.863336 | 2.68E-64 | -1.69E-46 |
| MS.gene058376 | MS.gene66702 | 0.841845 | 3.71E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene66702 | 0.864561 | 1.11E-64 | -1.69E-46 |
| MS.gene058700 | MS.gene66702 | 0.827844 | 1.25E-54 | -1.69E-46 |
| MS.gene058710 | MS.gene66702 | 0.811981 | 5.33E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene66702 | 0.877034 | 8.69E-69 | -1.69E-46 |
| MS.gene05886 | MS.gene66702 | 0.826687 | 2.37E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene66702 | 0.81571 | 8.04E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene66702 | 0.862306 | 5.57E-64 | -1.69E-46 |
| MS.gene059082 | MS.gene66702 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene66702 | 0.852638 | 4.05E-61 | -1.69E-46 |
| MS.gene059247 | MS.gene66702 | 0.841583 | 4.35E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene66702 | 0.831647 | 1.48E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene66702 | 0.88346 | 4.40E-71 | -1.69E-46 |
| MS.gene059462 | MS.gene66702 | 0.814335 | 1.62E-51 | -1.69E-46 |
| MS.gene059512 | MS.gene66702 | 0.838324 | 3.08E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene66702 | 0.832741 | 7.95E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene66702 | 0.826391 | 2.78E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene66702 | 0.828342 | 9.48E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene66702 | 0.816099 | 6.59E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene66702 | 0.824281 | 8.79E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene66702 | -0.81757 | 3.08E-52 | -1.69E-46 |
| MS.gene060247 | MS.gene66702 | 0.823341 | 1.46E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene66702 | 0.851453 | 8.79E-61 | -1.69E-46 |
| MS.gene060407 | MS.gene66702 | 0.835916 | 1.27E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene66702 | 0.854994 | 8.49E-62 | -1.69E-46 |
| MS.gene061114 | MS.gene66702 | -0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene66702 | 0.842682 | 2.23E-58 | -1.69E-46 |
| MS.gene061159 | MS.gene66702 | 0.867866 | 9.98E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66702.t1 | MTR_4g052010 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.19e-134 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66702.t1 | AT2G27290 | 62.827 | 191 | 51 | 4 | 6 | 181 | 5 | 190 | 1.01e-62 | 193 |
Find 36 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCTTGGTTACTTCTTC+AGG | 0.280999 | 4.3:-47862546 | None:intergenic |
| ACAAAGCTGCATCTCCAATT+AGG | 0.288679 | 4.3:+47863874 | MS.gene66702:CDS |
| AAGGAGTTGCTGGCAAAATA+TGG | 0.314060 | 4.3:+47863591 | MS.gene66702:CDS |
| AGCTTCAAGACCATACTTCT+TGG | 0.339383 | 4.3:-47862559 | None:intergenic |
| ATGGTCTTGAAGCTGGTCTT+TGG | 0.345812 | 4.3:+47862568 | MS.gene66702:CDS |
| ACTGTGGGTGGAAACCTAAT+TGG | 0.379765 | 4.3:-47863888 | None:intergenic |
| TGATCAAGCCAAGGAGTTGC+TGG | 0.407305 | 4.3:+47863581 | MS.gene66702:CDS |
| CAATCCAACCAGCTACGATT+GGG | 0.413841 | 4.3:-47863920 | None:intergenic |
| AAAAGTCGGTACCTTTGCTT+TGG | 0.429669 | 4.3:+47863839 | MS.gene66702:CDS |
| GAAGAAGTAACCAAGAAGTA+TGG | 0.441811 | 4.3:+47862549 | MS.gene66702:CDS |
| ATTAGATTTACGTGACTGAA+TGG | 0.446882 | 4.3:-47862451 | None:intergenic |
| CCAATCCAACCAGCTACGAT+TGG | 0.459512 | 4.3:-47863921 | None:intergenic |
| TTCAGGTGAAGATTGCTTTG+AGG | 0.462272 | 4.3:-47862529 | None:intergenic |
| TGTTATGTATTAATCAATGC+TGG | 0.464473 | 4.3:+47863666 | MS.gene66702:CDS |
| CCAATCGTAGCTGGTTGGAT+TGG | 0.470086 | 4.3:+47863921 | MS.gene66702:CDS |
| AAGAAGTATGGTCTTGAAGC+TGG | 0.499317 | 4.3:+47862561 | MS.gene66702:CDS |
| TGTTCAAACTTTGCTTCAGA+AGG | 0.506472 | 4.3:+47863695 | MS.gene66702:CDS |
| GCTCTTACCCCAATCGTAGC+TGG | 0.519207 | 4.3:+47863912 | MS.gene66702:CDS |
| GGGGAACAACAGAAATCAAA+AGG | 0.520589 | 4.3:+47863558 | MS.gene66702:CDS |
| TTACCCCAATCGTAGCTGGT+TGG | 0.540207 | 4.3:+47863916 | MS.gene66702:CDS |
| TTTCAGTTCAAAGGAAGAAG+GGG | 0.549822 | 4.3:+47863539 | MS.gene66702:CDS |
| AGAGATCAATGACAGAGTAA+TGG | 0.561630 | 4.3:-47863634 | None:intergenic |
| TCTTGAAGCTGGTCTTTGGA+AGG | 0.564484 | 4.3:+47862572 | MS.gene66702:CDS |
| AAAGAAGCACAAGAAGGTGA+TGG | 0.588002 | 4.3:-47862387 | None:intergenic |
| CTCAGAAAAGAAGCACAAGA+AGG | 0.593610 | 4.3:-47862393 | None:intergenic |
| ATCAAAAGGTGATCAAGCCA+AGG | 0.614436 | 4.3:+47863572 | MS.gene66702:CDS |
| GGGGTAAGAGCTACTGTGGG+TGG | 0.621082 | 4.3:-47863900 | None:intergenic |
| GATCAATGACAGAGTAATGG+AGG | 0.626103 | 4.3:-47863631 | None:intergenic |
| CAATGACAGAGTAATGGAGG+TGG | 0.627479 | 4.3:-47863628 | None:intergenic |
| GGAATCACTACTGATGCTAC+CGG | 0.632753 | 4.3:+47863813 | MS.gene66702:CDS |
| TGCAGCATATGCCAAAGCAA+AGG | 0.641846 | 4.3:-47863850 | None:intergenic |
| GATTGGGGTAAGAGCTACTG+TGG | 0.646696 | 4.3:-47863904 | None:intergenic |
| AATCCAACCAGCTACGATTG+GGG | 0.648062 | 4.3:-47863919 | None:intergenic |
| GAGTTGCTGGCAAAATATGG+AGG | 0.682334 | 4.3:+47863594 | MS.gene66702:CDS |
| ATTGGGGTAAGAGCTACTGT+GGG | 0.725389 | 4.3:-47863903 | None:intergenic |
| AGCTGTTAAAGAGAAAACTG+AGG | 0.740712 | 4.3:+47862494 | MS.gene66702:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAAGGAAAAAAAAA+AGG | - | chr4.3:47862735-47862754 | None:intergenic | 15.0% |
| !! | AAATAAATAAGAGAAAGAAA+TGG | - | chr4.3:47862601-47862620 | None:intergenic | 15.0% |
| !! | AATAAATAAGAGAAAGAAAT+GGG | - | chr4.3:47862600-47862619 | None:intergenic | 15.0% |
| !! | ATTATACTTAAATCTACATT+GGG | - | chr4.3:47863739-47863758 | None:intergenic | 15.0% |
| !!! | ATTTAAAGCAATAAAAATGA+AGG | - | chr4.3:47862747-47862766 | None:intergenic | 15.0% |
| !!! | GTTCTAAAAAGTATATATAA+AGG | + | chr4.3:47862800-47862819 | MS.gene66702:intron | 15.0% |
| !!! | TTTCTTTCTCTTATTTATTT+TGG | + | chr4.3:47862601-47862620 | MS.gene66702:intron | 15.0% |
| !! | CATTATACTTAAATCTACAT+TGG | - | chr4.3:47863740-47863759 | None:intergenic | 20.0% |
| !! | TATAAAGGATATTCAAAGAT+AGG | + | chr4.3:47862815-47862834 | MS.gene66702:intron | 20.0% |
| !! | TCTGTGTAAAATGAAAATTA+TGG | + | chr4.3:47863504-47863523 | MS.gene66702:intron | 20.0% |
| !! | TTCAAACTTCTACTTTAAAT+TGG | - | chr4.3:47863199-47863218 | None:intergenic | 20.0% |
| !! | TTGGTTTAATTATGATTATG+TGG | + | chr4.3:47862620-47862639 | MS.gene66702:intron | 20.0% |
| !!! | GAAATATAAGTTGAGTTTTA+AGG | + | chr4.3:47863281-47863300 | MS.gene66702:intron | 20.0% |
| !!! | TTGTTTACGAGTTTTATTTT+AGG | + | chr4.3:47863016-47863035 | MS.gene66702:intron | 20.0% |
| ! | AAAAGATGAATTTCTCACTT+AGG | - | chr4.3:47862672-47862691 | None:intergenic | 25.0% |
| ! | ACTAATGATTGAAAATCGTT+TGG | - | chr4.3:47863427-47863446 | None:intergenic | 25.0% |
| ! | TGTTATGTATTAATCAATGC+TGG | + | chr4.3:47863666-47863685 | MS.gene66702:CDS | 25.0% |
| !! | AAGTGAGAAATTCATCTTTT+TGG | + | chr4.3:47862672-47862691 | MS.gene66702:intron | 25.0% |
| !! | AGTGAGAAATTCATCTTTTT+GGG | + | chr4.3:47862673-47862692 | MS.gene66702:intron | 25.0% |
| !! | GACATGGATTTTATACTTAT+GGG | + | chr4.3:47863378-47863397 | MS.gene66702:intron | 25.0% |
| !! | TGACATGGATTTTATACTTA+TGG | + | chr4.3:47863377-47863396 | MS.gene66702:intron | 25.0% |
| !!! | TAGGTTTTATTTCCATTTCT+TGG | + | chr4.3:47863035-47863054 | MS.gene66702:intron | 25.0% |
| ATTAGATTTACGTGACTGAA+TGG | - | chr4.3:47862454-47862473 | None:intergenic | 30.0% | |
| TATCTCAGCAGTAAAATTGT+CGG | - | chr4.3:47863225-47863244 | None:intergenic | 30.0% | |
| TTTCTTGTCATGTAGAACTT+GGG | + | chr4.3:47862930-47862949 | MS.gene66702:intron | 30.0% | |
| ! | ATTTTATTGCCGAAATTTGC+AGG | + | chr4.3:47862838-47862857 | MS.gene66702:intron | 30.0% |
| ! | ATTTTCAGTTCAAAGGAAGA+AGG | + | chr4.3:47863537-47863556 | MS.gene66702:CDS | 30.0% |
| ! | TGTATCTTTCCCTGATTTTA+GGG | + | chr4.3:47863068-47863087 | MS.gene66702:intron | 30.0% |
| ! | TTTGCAGATTTTCAGTTCAA+AGG | + | chr4.3:47863530-47863549 | MS.gene66702:intron | 30.0% |
| ! | TTTTATTGCCGAAATTTGCA+GGG | + | chr4.3:47862839-47862858 | MS.gene66702:intron | 30.0% |
| ! | TTTTCAGTTCAAAGGAAGAA+GGG | + | chr4.3:47863538-47863557 | MS.gene66702:CDS | 30.0% |
| ! | TTTTCTTGTCATGTAGAACT+TGG | + | chr4.3:47862929-47862948 | MS.gene66702:intron | 30.0% |
| AGAGATCAATGACAGAGTAA+TGG | - | chr4.3:47863637-47863656 | None:intergenic | 35.0% | |
| AGCTGTTAAAGAGAAAACTG+AGG | + | chr4.3:47862494-47862513 | MS.gene66702:CDS | 35.0% | |
| CAGAATCGATATGCAAACAT+TGG | - | chr4.3:47863163-47863182 | None:intergenic | 35.0% | |
| CAGTACAGAACATTTCTTGA+AGG | - | chr4.3:47863125-47863144 | None:intergenic | 35.0% | |
| CAGTATGCTAAACCAAGAAA+TGG | - | chr4.3:47863050-47863069 | None:intergenic | 35.0% | |
| CATTAAAACGATAACCCAAC+TGG | - | chr4.3:47863343-47863362 | None:intergenic | 35.0% | |
| CATTATGTCTGTATATCTGC+AGG | + | chr4.3:47863788-47863807 | MS.gene66702:intron | 35.0% | |
| GAAGAAGTAACCAAGAAGTA+TGG | + | chr4.3:47862549-47862568 | MS.gene66702:CDS | 35.0% | |
| TACTTCTTGGTTACTTCTTC+AGG | - | chr4.3:47862549-47862568 | None:intergenic | 35.0% | |
| TGTTCAAACTTTGCTTCAGA+AGG | + | chr4.3:47863695-47863714 | MS.gene66702:CDS | 35.0% | |
| TTTACACAGAATGAAAAGCG+CGG | - | chr4.3:47863494-47863513 | None:intergenic | 35.0% | |
| TTTCAGTTCAAAGGAAGAAG+GGG | + | chr4.3:47863539-47863558 | MS.gene66702:CDS | 35.0% | |
| TTTCCTTTCCCTGCAAATTT+CGG | - | chr4.3:47862850-47862869 | None:intergenic | 35.0% | |
| ! | ATTTTGCTCCCCTAAAATCA+GGG | - | chr4.3:47863080-47863099 | None:intergenic | 35.0% |
| ! | CAGTTGGGTTATCGTTTTAA+TGG | + | chr4.3:47863341-47863360 | MS.gene66702:intron | 35.0% |
| ! | CTGTATCTTTCCCTGATTTT+AGG | + | chr4.3:47863067-47863086 | MS.gene66702:intron | 35.0% |
| ! | GTATCTTTCCCTGATTTTAG+GGG | + | chr4.3:47863069-47863088 | MS.gene66702:intron | 35.0% |
| ! | TATTTTGCTCCCCTAAAATC+AGG | - | chr4.3:47863081-47863100 | None:intergenic | 35.0% |
| AAAAGTCGGTACCTTTGCTT+TGG | + | chr4.3:47863839-47863858 | MS.gene66702:CDS | 40.0% | |
| AAGGAGTTGCTGGCAAAATA+TGG | + | chr4.3:47863591-47863610 | MS.gene66702:CDS | 40.0% | |
| ACAAAGCTGCATCTCCAATT+AGG | + | chr4.3:47863874-47863893 | MS.gene66702:CDS | 40.0% | |
| AGCTTCAAGACCATACTTCT+TGG | - | chr4.3:47862562-47862581 | None:intergenic | 40.0% | |
| ATCAAAAGGTGATCAAGCCA+AGG | + | chr4.3:47863572-47863591 | MS.gene66702:CDS | 40.0% | |
| ATGTCTGTATATCTGCAGGT+AGG | + | chr4.3:47863792-47863811 | MS.gene66702:intron | 40.0% | |
| GATCAATGACAGAGTAATGG+AGG | - | chr4.3:47863634-47863653 | None:intergenic | 40.0% | |
| GGAGAGGATGAATAATGACA+TGG | + | chr4.3:47863362-47863381 | MS.gene66702:intron | 40.0% | |
| GGGAGCAAAATATGTGTTGT+GGG | + | chr4.3:47863089-47863108 | MS.gene66702:intron | 40.0% | |
| GGGGAACAACAGAAATCAAA+AGG | + | chr4.3:47863558-47863577 | MS.gene66702:CDS | 40.0% | |
| GGTTGAGTCGACAAAAATCA+AGG | - | chr4.3:47863322-47863341 | None:intergenic | 40.0% | |
| TTCAGGTGAAGATTGCTTTG+AGG | - | chr4.3:47862532-47862551 | None:intergenic | 40.0% | |
| ! | AAAGAAGCACAAGAAGGTGA+TGG | - | chr4.3:47862390-47862409 | None:intergenic | 40.0% |
| ! | AAGAAGTATGGTCTTGAAGC+TGG | + | chr4.3:47862561-47862580 | MS.gene66702:CDS | 40.0% |
| ! | ATATTTTGCCAGCAACTCCT+TGG | - | chr4.3:47863592-47863611 | None:intergenic | 40.0% |
| ! | CTCAGAAAAGAAGCACAAGA+AGG | - | chr4.3:47862396-47862415 | None:intergenic | 40.0% |
| ! | GAAGTGTCTCGTATAGTCTA+CGG | - | chr4.3:47863453-47863472 | None:intergenic | 40.0% |
| !! | GGGTTATCGTTTTAATGGAG+AGG | + | chr4.3:47863346-47863365 | MS.gene66702:intron | 40.0% |
| !! | TTATGGGAGTGTCATCATGT+CGG | + | chr4.3:47863394-47863413 | MS.gene66702:intron | 40.0% |
| !!! | AAAGGTACCGACTTTTTCAC+CGG | - | chr4.3:47863835-47863854 | None:intergenic | 40.0% |
| !!! | TTTTGTCGACTCAACCAGTT+GGG | + | chr4.3:47863326-47863345 | MS.gene66702:intron | 40.0% |
| !!! | TTTTTGTCGACTCAACCAGT+TGG | + | chr4.3:47863325-47863344 | MS.gene66702:intron | 40.0% |
| AATCCAACCAGCTACGATTG+GGG | - | chr4.3:47863922-47863941 | None:intergenic | 45.0% | |
| ACTGTGGGTGGAAACCTAAT+TGG | - | chr4.3:47863891-47863910 | None:intergenic | 45.0% | |
| ATTGGGGTAAGAGCTACTGT+GGG | - | chr4.3:47863906-47863925 | None:intergenic | 45.0% | |
| CAATCCAACCAGCTACGATT+GGG | - | chr4.3:47863923-47863942 | None:intergenic | 45.0% | |
| GAGTTGCTGGCAAAATATGG+AGG | + | chr4.3:47863594-47863613 | MS.gene66702:CDS | 45.0% | |
| GATGCTACCGGTGAAAAAGT+CGG | + | chr4.3:47863825-47863844 | MS.gene66702:CDS | 45.0% | |
| GGAATCACTACTGATGCTAC+CGG | + | chr4.3:47863813-47863832 | MS.gene66702:CDS | 45.0% | |
| GGGGAGCAAAATATGTGTTG+TGG | + | chr4.3:47863088-47863107 | MS.gene66702:intron | 45.0% | |
| TGCAGCATATGCCAAAGCAA+AGG | - | chr4.3:47863853-47863872 | None:intergenic | 45.0% | |
| TTGCCGAAATTTGCAGGGAA+AGG | + | chr4.3:47862844-47862863 | MS.gene66702:intron | 45.0% | |
| ! | AAAAGCGCGGCTTTGACTTT+AGG | - | chr4.3:47863481-47863500 | None:intergenic | 45.0% |
| ! | AAAGCGCGGCTTTGACTTTA+GGG | - | chr4.3:47863480-47863499 | None:intergenic | 45.0% |
| ! | CAATGACAGAGTAATGGAGG+TGG | - | chr4.3:47863631-47863650 | None:intergenic | 45.0% |
| !! | ATGGTCTTGAAGCTGGTCTT+TGG | + | chr4.3:47862568-47862587 | MS.gene66702:CDS | 45.0% |
| !! | TCTTGAAGCTGGTCTTTGGA+AGG | + | chr4.3:47862572-47862591 | MS.gene66702:CDS | 45.0% |
| CCAATCCAACCAGCTACGAT+TGG | - | chr4.3:47863924-47863943 | None:intergenic | 50.0% | |
| CCAATCGTAGCTGGTTGGAT+TGG | + | chr4.3:47863921-47863940 | MS.gene66702:CDS | 50.0% | |
| GATTGGGGTAAGAGCTACTG+TGG | - | chr4.3:47863907-47863926 | None:intergenic | 50.0% | |
| TGATCAAGCCAAGGAGTTGC+TGG | + | chr4.3:47863581-47863600 | MS.gene66702:CDS | 50.0% | |
| TTACCCCAATCGTAGCTGGT+TGG | + | chr4.3:47863916-47863935 | MS.gene66702:CDS | 50.0% | |
| !! | GCGGCTTTGACTTTAGGGTT+AGG | - | chr4.3:47863475-47863494 | None:intergenic | 50.0% |
| GCTCTTACCCCAATCGTAGC+TGG | + | chr4.3:47863912-47863931 | MS.gene66702:CDS | 55.0% | |
| GGGGTAAGAGCTACTGTGGG+TGG | - | chr4.3:47863903-47863922 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 47862366 | 47863968 | 47862366 | ID=MS.gene66702 |
| chr4.3 | mRNA | 47862366 | 47863968 | 47862366 | ID=MS.gene66702.t1;Parent=MS.gene66702 |
| chr4.3 | exon | 47862366 | 47862593 | 47862366 | ID=MS.gene66702.t1.exon1;Parent=MS.gene66702.t1 |
| chr4.3 | CDS | 47862366 | 47862593 | 47862366 | ID=cds.MS.gene66702.t1;Parent=MS.gene66702.t1 |
| chr4.3 | exon | 47863537 | 47863716 | 47863537 | ID=MS.gene66702.t1.exon2;Parent=MS.gene66702.t1 |
| chr4.3 | CDS | 47863537 | 47863716 | 47863537 | ID=cds.MS.gene66702.t1;Parent=MS.gene66702.t1 |
| chr4.3 | exon | 47863810 | 47863968 | 47863810 | ID=MS.gene66702.t1.exon3;Parent=MS.gene66702.t1 |
| chr4.3 | CDS | 47863810 | 47863968 | 47863810 | ID=cds.MS.gene66702.t1;Parent=MS.gene66702.t1 |
| Gene Sequence |
| Protein sequence |
