Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98853.t1 | XP_013453016.1 | 72.6 | 175 | 44 | 1 | 1 | 175 | 1 | 171 | 6.90E-62 | 246.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98853.t1 | A0A072UB75 | 72.6 | 175 | 44 | 1 | 1 | 175 | 1 | 171 | 5.0e-62 | 246.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene98853 | 0.815322 | 9.81E-52 | -1.69E-46 |
| MS.gene049171 | MS.gene98853 | 0.834714 | 2.56E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene98853 | 0.835053 | 2.10E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene98853 | 0.832238 | 1.06E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene98853 | 0.859036 | 5.46E-63 | -1.69E-46 |
| MS.gene049633 | MS.gene98853 | 0.816963 | 4.22E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene98853 | 0.801322 | 9.51E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene98853 | 0.80131 | 9.57E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene98853 | 0.830477 | 2.87E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene98853 | 0.827629 | 1.41E-54 | -1.69E-46 |
| MS.gene050538 | MS.gene98853 | 0.83328 | 5.84E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene98853 | 0.870757 | 1.15E-66 | -1.69E-46 |
| MS.gene050593 | MS.gene98853 | 0.826742 | 2.30E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene98853 | 0.821432 | 4.05E-53 | -1.69E-46 |
| MS.gene050647 | MS.gene98853 | -0.808578 | 2.89E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene98853 | 0.82315 | 1.62E-53 | -1.69E-46 |
| MS.gene050690 | MS.gene98853 | 0.803606 | 3.22E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene98853 | 0.838132 | 3.45E-57 | -1.69E-46 |
| MS.gene050747 | MS.gene98853 | 0.850884 | 1.27E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene98853 | 0.818887 | 1.55E-52 | -1.69E-46 |
| MS.gene050781 | MS.gene98853 | 0.814433 | 1.54E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene98853 | 0.835676 | 1.46E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene98853 | 0.805852 | 1.09E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene98853 | 0.807099 | 5.96E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene98853 | 0.851988 | 6.20E-61 | -1.69E-46 |
| MS.gene050986 | MS.gene98853 | 0.820515 | 6.59E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene98853 | 0.806198 | 9.24E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene98853 | 0.807634 | 4.59E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene98853 | 0.818082 | 2.36E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene98853 | 0.844159 | 8.98E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene98853 | 0.867179 | 1.66E-65 | -1.69E-46 |
| MS.gene052211 | MS.gene98853 | -0.815349 | 9.68E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene98853 | -0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene98853 | 0.812578 | 3.95E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene98853 | 0.817498 | 3.20E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene98853 | 0.814655 | 1.38E-51 | -1.69E-46 |
| MS.gene052494 | MS.gene98853 | -0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene052501 | MS.gene98853 | 0.857846 | 1.24E-62 | -1.69E-46 |
| MS.gene052503 | MS.gene98853 | 0.867325 | 1.49E-65 | -1.69E-46 |
| MS.gene052505 | MS.gene98853 | 0.866752 | 2.27E-65 | -1.69E-46 |
| MS.gene052606 | MS.gene98853 | -0.82468 | 7.08E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene98853 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene98853 | 0.872086 | 4.16E-67 | -1.69E-46 |
| MS.gene052825 | MS.gene98853 | 0.864319 | 1.32E-64 | -1.69E-46 |
| MS.gene052982 | MS.gene98853 | 0.81233 | 4.48E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene98853 | 0.857718 | 1.35E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene98853 | 0.804063 | 2.59E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene98853 | 0.836111 | 1.13E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene98853 | 0.835686 | 1.45E-56 | -1.69E-46 |
| MS.gene053436 | MS.gene98853 | 0.830812 | 2.38E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene98853 | 0.86584 | 4.41E-65 | -1.69E-46 |
| MS.gene053579 | MS.gene98853 | 0.828833 | 7.22E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene98853 | 0.831207 | 1.90E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene98853 | 0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene98853 | 0.804749 | 1.86E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene98853 | 0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene98853 | -0.819935 | 8.94E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene98853 | 0.889643 | 2.02E-73 | -1.69E-46 |
| MS.gene054884 | MS.gene98853 | -0.844712 | 6.38E-59 | -1.69E-46 |
| MS.gene054927 | MS.gene98853 | 0.854673 | 1.05E-61 | -1.69E-46 |
| MS.gene054954 | MS.gene98853 | 0.809005 | 2.34E-50 | -1.69E-46 |
| MS.gene055240 | MS.gene98853 | -0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene055289 | MS.gene98853 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene98853 | 0.819782 | 9.69E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene98853 | 0.843427 | 1.41E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene98853 | 0.857289 | 1.81E-62 | -1.69E-46 |
| MS.gene055629 | MS.gene98853 | 0.850729 | 1.41E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene98853 | 0.819353 | 1.21E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene98853 | 0.802874 | 4.56E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene98853 | 0.854943 | 8.79E-62 | -1.69E-46 |
| MS.gene056040 | MS.gene98853 | 0.851918 | 6.49E-61 | -1.69E-46 |
| MS.gene056166 | MS.gene98853 | 0.833985 | 3.89E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene98853 | 0.834914 | 2.28E-56 | -1.69E-46 |
| MS.gene056590 | MS.gene98853 | -0.807771 | 4.29E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene98853 | -0.808466 | 3.06E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene98853 | 0.812704 | 3.71E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene98853 | 0.818295 | 2.11E-52 | -1.69E-46 |
| MS.gene056748 | MS.gene98853 | -0.81784 | 2.68E-52 | -1.69E-46 |
| MS.gene056877 | MS.gene98853 | 0.830588 | 2.70E-55 | -1.69E-46 |
| MS.gene057048 | MS.gene98853 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene98853 | 0.801921 | 7.17E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene98853 | -0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene98853 | 0.80684 | 6.77E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene98853 | 0.861456 | 1.01E-63 | -1.69E-46 |
| MS.gene057831 | MS.gene98853 | 0.826429 | 2.73E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene98853 | 0.808563 | 2.91E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene98853 | 0.819392 | 1.19E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene98853 | -0.807059 | 6.08E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene98853 | 0.835172 | 1.96E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene98853 | 0.840449 | 8.64E-58 | -1.69E-46 |
| MS.gene058544 | MS.gene98853 | 0.877352 | 6.73E-69 | -1.69E-46 |
| MS.gene058838 | MS.gene98853 | 0.851439 | 8.87E-61 | -1.69E-46 |
| MS.gene05883 | MS.gene98853 | 0.823235 | 1.54E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene98853 | 0.80575 | 1.15E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene98853 | 0.843044 | 1.79E-58 | -1.69E-46 |
| MS.gene05914 | MS.gene98853 | 0.845811 | 3.22E-59 | -1.69E-46 |
| MS.gene05934 | MS.gene98853 | 0.818198 | 2.22E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene98853 | 0.868322 | 7.12E-66 | -1.69E-46 |
| MS.gene059677 | MS.gene98853 | 0.824918 | 6.22E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene98853 | 0.834772 | 2.47E-56 | -1.69E-46 |
| MS.gene059756 | MS.gene98853 | 0.817474 | 3.24E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene98853 | 0.8444 | 7.74E-59 | -1.69E-46 |
| MS.gene06000 | MS.gene98853 | 0.814395 | 1.58E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene98853 | -0.827853 | 1.24E-54 | -1.69E-46 |
| MS.gene060358 | MS.gene98853 | -0.801537 | 8.59E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene98853 | 0.837642 | 4.61E-57 | -1.69E-46 |
| MS.gene060778 | MS.gene98853 | 0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene98853 | 0.840158 | 1.03E-57 | -1.69E-46 |
| MS.gene060835 | MS.gene98853 | 0.844354 | 7.97E-59 | -1.69E-46 |
| MS.gene06092 | MS.gene98853 | 0.845725 | 3.39E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene98853 | 0.85842 | 8.34E-63 | -1.69E-46 |
| MS.gene061038 | MS.gene98853 | -0.813462 | 2.53E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene98853 | 0.81201 | 5.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98853.t1 | MTR_6g084620 | 90.857 | 175 | 12 | 2 | 1 | 175 | 1 | 171 | 6.86e-104 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98853.t1 | AT1G73885 | 58.824 | 85 | 33 | 2 | 92 | 174 | 95 | 179 | 1.92e-26 | 99.8 |
Find 54 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCTAGATTGTAATTTA+TGG | 0.123274 | 6.1:-74152545 | None:intergenic |
| AGGAGGGTGTAGGGTGTTGT+TGG | 0.287013 | 6.1:-74150336 | None:intergenic |
| GGAGAATGGTTGTGGATTCT+TGG | 0.288850 | 6.1:+74150600 | MS.gene98853:CDS |
| GGTATTTCAACCTCGTTTCT+TGG | 0.323311 | 6.1:-74150474 | None:intergenic |
| AAAGAGCCTGATTTCTTTGA+AGG | 0.327839 | 6.1:+74150549 | MS.gene98853:CDS |
| GGAGGGTGTAGGGTGTTGTT+GGG | 0.338885 | 6.1:-74150335 | None:intergenic |
| GGTGTAGGGTGTTGTTGGGG+TGG | 0.347713 | 6.1:-74150331 | None:intergenic |
| CAACAGTGGTTGTTGGTTGT+TGG | 0.374252 | 6.1:-74150437 | None:intergenic |
| TGGAATACTGTTGGGTTTGT+TGG | 0.381813 | 6.1:+74150579 | MS.gene98853:CDS |
| ATGTCCGATTCAGATGTTTC+AGG | 0.388886 | 6.1:-74152628 | None:intergenic |
| GAGGGTGTAGGGTGTTGTTG+GGG | 0.402150 | 6.1:-74150334 | None:intergenic |
| TCCTCATCAACAGTGGTTGT+TGG | 0.427475 | 6.1:-74150444 | None:intergenic |
| GAAGATGGTAGGAGGGTGTA+GGG | 0.430849 | 6.1:-74150345 | None:intergenic |
| GCAGCCATAAATTACAATCT+AGG | 0.431465 | 6.1:+74152541 | MS.gene98853:CDS |
| TGAGGACCTTCAAAGAAATC+AGG | 0.443462 | 6.1:-74150555 | None:intergenic |
| TGATTGCAGGTACTCGGTGG+TGG | 0.443641 | 6.1:+74152514 | MS.gene98853:intron |
| AGAAGATGGTAGGAGGGTGT+AGG | 0.446000 | 6.1:-74150346 | None:intergenic |
| GGTTTGTTGGAGAATGGTTG+TGG | 0.447045 | 6.1:+74150592 | MS.gene98853:CDS |
| ATGAAGATTGGCCTCTTGAA+TGG | 0.449971 | 6.1:+74150508 | MS.gene98853:CDS |
| TAAGGAAACTCCTGCATACA+AGG | 0.456201 | 6.1:+74152576 | MS.gene98853:CDS |
| CTGTTGGGTTTGTTGGAGAA+TGG | 0.461075 | 6.1:+74150586 | MS.gene98853:CDS |
| GTCCTCAGTGGAATACTGTT+GGG | 0.482795 | 6.1:+74150571 | MS.gene98853:CDS |
| AGAAGAAGAAGATGGTAGGA+GGG | 0.484589 | 6.1:-74150352 | None:intergenic |
| ACAACCTGAAACATCTGAAT+CGG | 0.485907 | 6.1:+74152624 | MS.gene98853:CDS |
| TTGGGGTGGTCTTGTTGTAG+AGG | 0.490468 | 6.1:-74150317 | None:intergenic |
| GTAGCTACATGCGGTGGTGC+AGG | 0.492658 | 6.1:+74150291 | MS.gene98853:CDS |
| AAGAAGAAGAAGATGGTAGG+AGG | 0.496497 | 6.1:-74150353 | None:intergenic |
| AGGAGCTACCTCTGTAGGAT+TGG | 0.496936 | 6.1:-74152659 | None:intergenic |
| GACTGAGATTCCTTGTATGC+AGG | 0.497420 | 6.1:-74152586 | None:intergenic |
| CTTCTTGAAGAAGAAGAAGA+TGG | 0.497936 | 6.1:-74150360 | None:intergenic |
| CCTCTTGAATGGAGACCTCC+TGG | 0.499989 | 6.1:+74150519 | MS.gene98853:CDS |
| AAACTAGGAGCTACCTCTGT+AGG | 0.526704 | 6.1:-74152664 | None:intergenic |
| AGATTTCTTCACGTTCAAGA+AGG | 0.538426 | 6.1:+74150412 | MS.gene98853:CDS |
| GGTCCTCAGTGGAATACTGT+TGG | 0.542352 | 6.1:+74150570 | MS.gene98853:CDS |
| CAATCTTCATCAGAGTAAAA+CGG | 0.547523 | 6.1:-74150495 | None:intergenic |
| AAATCTTCTTAGCTGAAACT+AGG | 0.551449 | 6.1:-74150395 | None:intergenic |
| TCATCGTGATTGCAGGTACT+CGG | 0.560112 | 6.1:+74152508 | MS.gene98853:intron |
| TGCACCACCGCATGTAGCTA+CGG | 0.561836 | 6.1:-74150289 | None:intergenic |
| GAATGGTTGTGGATTCTTGG+TGG | 0.562063 | 6.1:+74150603 | MS.gene98853:CDS |
| ACCAACAACCACTGTTGATG+AGG | 0.567125 | 6.1:+74150443 | MS.gene98853:CDS |
| TTGAAGAAGAAGAAGATGGT+AGG | 0.573751 | 6.1:-74150356 | None:intergenic |
| GATTGCAGGTACTCGGTGGT+GGG | 0.579381 | 6.1:+74152515 | MS.gene98853:intron |
| TGGATGGACTAGTTCAAACT+AGG | 0.580396 | 6.1:-74152679 | None:intergenic |
| TCAGGCTCTTTGTAAGTACC+AGG | 0.580767 | 6.1:-74150537 | None:intergenic |
| TTCTACTTCCTCATCAACAG+TGG | 0.592861 | 6.1:-74150451 | None:intergenic |
| ATTTCTTTGAAGGTCCTCAG+TGG | 0.623902 | 6.1:+74150559 | MS.gene98853:CDS |
| CCAGGAGGTCTCCATTCAAG+AGG | 0.637394 | 6.1:-74150519 | None:intergenic |
| GCATTCACCGTAGCTACATG+CGG | 0.676586 | 6.1:+74150282 | MS.gene98853:CDS |
| TCGTGATTGCAGGTACTCGG+TGG | 0.679621 | 6.1:+74152511 | MS.gene98853:intron |
| TTCACCGTAGCTACATGCGG+TGG | 0.691064 | 6.1:+74150285 | MS.gene98853:CDS |
| GGCTCTTTGTAAGTACCAGG+AGG | 0.691981 | 6.1:-74150534 | None:intergenic |
| ATTCGAGTCCAATCCTACAG+AGG | 0.715767 | 6.1:+74152651 | MS.gene98853:CDS |
| GGAAGTAGAACCAAGAAACG+AGG | 0.736887 | 6.1:+74150464 | MS.gene98853:CDS |
| AACCCAACAGTATTCCACTG+AGG | 0.795226 | 6.1:-74150573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATGAACTTGTTTT+AGG | - | chr6.1:74151933-74151952 | None:intergenic | 15.0% |
| !!! | TTTTAGTATAAGAAGAAATT+TGG | + | chr6.1:74151310-74151329 | MS.gene98853:intron | 15.0% |
| !! | AAAAACTTCCTAAATAGATT+AGG | + | chr6.1:74152326-74152345 | MS.gene98853:intron | 20.0% |
| !! | ACATTTAAATACCATAGTTA+TGG | - | chr6.1:74152000-74152019 | None:intergenic | 20.0% |
| !! | ACTATGGTATTTAAATGTTA+AGG | + | chr6.1:74152002-74152021 | MS.gene98853:intron | 20.0% |
| !! | ATAATATTGCAAAACAATTG+TGG | - | chr6.1:74152076-74152095 | None:intergenic | 20.0% |
| !!! | ACTTAGTTCATATTTTGAAT+TGG | - | chr6.1:74151519-74151538 | None:intergenic | 20.0% |
| !!! | AGTTAACTTTTGAGTTTATT+TGG | + | chr6.1:74151343-74151362 | MS.gene98853:intron | 20.0% |
| !!! | TAATCTATTTAGGAAGTTTT+TGG | - | chr6.1:74152327-74152346 | None:intergenic | 20.0% |
| !!! | TAATTTTATCTTCGAAAACT+TGG | - | chr6.1:74152168-74152187 | None:intergenic | 20.0% |
| !!! | TTTAGCTTCTTACAAAAAAA+AGG | + | chr6.1:74151019-74151038 | MS.gene98853:intron | 20.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr6.1:74150776-74150795 | None:intergenic | 25.0% |
| ! | AGTTAAAATGTTTCGATACA+AGG | + | chr6.1:74150879-74150898 | MS.gene98853:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr6.1:74150775-74150794 | None:intergenic | 25.0% |
| ! | CATAAGTAACTAGAACAATT+GGG | + | chr6.1:74151580-74151599 | MS.gene98853:intron | 25.0% |
| ! | CGAAGATAAAATTACTTATG+TGG | + | chr6.1:74152174-74152193 | MS.gene98853:intron | 25.0% |
| ! | TACTACAAGGTTTCTATATT+AGG | - | chr6.1:74151263-74151282 | None:intergenic | 25.0% |
| ! | TAGTATAAGAAGAAATTTGG+AGG | + | chr6.1:74151313-74151332 | MS.gene98853:intron | 25.0% |
| ! | TCATAAGTAACTAGAACAAT+TGG | + | chr6.1:74151579-74151598 | MS.gene98853:intron | 25.0% |
| !! | CTTGAGTATTAGAAGAATTT+TGG | + | chr6.1:74150737-74150756 | MS.gene98853:intron | 25.0% |
| !! | GTTTTCATAAGTATCTTGAA+GGG | + | chr6.1:74151050-74151069 | MS.gene98853:intron | 25.0% |
| !! | TGTTTTCATAAGTATCTTGA+AGG | + | chr6.1:74151049-74151068 | MS.gene98853:intron | 25.0% |
| !! | TTTTGCAATATTATGAATCC+TGG | + | chr6.1:74152082-74152101 | MS.gene98853:intron | 25.0% |
| !!! | TAAGTTGTTTTAACCCATTT+AGG | + | chr6.1:74150904-74150923 | MS.gene98853:intron | 25.0% |
| !!! | TAGTTCATATTTTGAATTGG+CGG | - | chr6.1:74151516-74151535 | None:intergenic | 25.0% |
| AAATACACACACATACTACA+AGG | - | chr6.1:74151276-74151295 | None:intergenic | 30.0% | |
| AAATCTTCTTAGCTGAAACT+AGG | - | chr6.1:74150398-74150417 | None:intergenic | 30.0% | |
| AGTTTCTGCTAATGAATTGT+AGG | + | chr6.1:74151759-74151778 | MS.gene98853:intron | 30.0% | |
| CAAAAAAAGGTTATACCGTA+TGG | - | chr6.1:74151095-74151114 | None:intergenic | 30.0% | |
| CAAACATGCCTAATCTATTT+AGG | - | chr6.1:74152337-74152356 | None:intergenic | 30.0% | |
| CAATCTTCATCAGAGTAAAA+CGG | - | chr6.1:74150498-74150517 | None:intergenic | 30.0% | |
| CTTGTCATATATCAACATGT+AGG | + | chr6.1:74152459-74152478 | MS.gene98853:intron | 30.0% | |
| GATCGAAATATTAGATCATG+TGG | - | chr6.1:74151668-74151687 | None:intergenic | 30.0% | |
| GCAGAGCAATAAAATTTGAA+TGG | - | chr6.1:74152232-74152251 | None:intergenic | 30.0% | |
| GTATTGTGCGTGAATATTAA+TGG | - | chr6.1:74151180-74151199 | None:intergenic | 30.0% | |
| TACTTGTGAGACTATTTGAA+CGG | - | chr6.1:74151123-74151142 | None:intergenic | 30.0% | |
| TATAAGAAGAAATTTGGAGG+AGG | + | chr6.1:74151837-74151856 | MS.gene98853:intron | 30.0% | |
| TCGCAAAATAGCAAAAGAAA+AGG | - | chr6.1:74151726-74151745 | None:intergenic | 30.0% | |
| TCTAATATTTCGATCCATCT+TGG | + | chr6.1:74151673-74151692 | MS.gene98853:intron | 30.0% | |
| TGATATACGGTATAACCATA+CGG | + | chr6.1:74151077-74151096 | MS.gene98853:intron | 30.0% | |
| TGCTCCTAGATTGTAATTTA+TGG | - | chr6.1:74152548-74152567 | None:intergenic | 30.0% | |
| TGGTCAAATATAGTATCATG+CGG | - | chr6.1:74152056-74152075 | None:intergenic | 30.0% | |
| ! | GTTTGTTGAATTTAAGCACA+AGG | + | chr6.1:74152265-74152284 | MS.gene98853:intron | 30.0% |
| ! | TTTGTTTGTTGCTGAATTGT+TGG | + | chr6.1:74150670-74150689 | MS.gene98853:intron | 30.0% |
| !!! | TTGTTTTAACCCATTTAGGT+TGG | + | chr6.1:74150908-74150927 | MS.gene98853:intron | 30.0% |
| AAAGAGCCTGATTTCTTTGA+AGG | + | chr6.1:74150549-74150568 | MS.gene98853:CDS | 35.0% | |
| ACAACCTGAAACATCTGAAT+CGG | + | chr6.1:74152624-74152643 | MS.gene98853:CDS | 35.0% | |
| ACTGCAGCACATAGATAAAT+GGG | - | chr6.1:74151961-74151980 | None:intergenic | 35.0% | |
| AGATTTCTTCACGTTCAAGA+AGG | + | chr6.1:74150412-74150431 | MS.gene98853:CDS | 35.0% | |
| AGTAACTAGAACAATTGGGT+TGG | + | chr6.1:74151584-74151603 | MS.gene98853:intron | 35.0% | |
| ATCTATGTGCTGCAGTATTA+AGG | + | chr6.1:74151965-74151984 | MS.gene98853:intron | 35.0% | |
| CAACTTATTGTGCAGCTTAT+AGG | + | chr6.1:74150787-74150806 | MS.gene98853:intron | 35.0% | |
| CACTTATCTAGGAACATGTT+TGG | + | chr6.1:74151375-74151394 | MS.gene98853:intron | 35.0% | |
| CCATTAAGCGTATCCATTAA+GGG | + | chr6.1:74151147-74151166 | MS.gene98853:intron | 35.0% | |
| CTTCTTGAAGAAGAAGAAGA+TGG | - | chr6.1:74150363-74150382 | None:intergenic | 35.0% | |
| CTTGAAGGGTTTGTGATATA+CGG | + | chr6.1:74151064-74151083 | MS.gene98853:intron | 35.0% | |
| GAAGAATATATGACCCTGTT+TGG | + | chr6.1:74150759-74150778 | MS.gene98853:intron | 35.0% | |
| GCAGCCATAAATTACAATCT+AGG | + | chr6.1:74152541-74152560 | MS.gene98853:CDS | 35.0% | |
| GCGTGAATATTAATGGTTGT+TGG | - | chr6.1:74151173-74151192 | None:intergenic | 35.0% | |
| TACTGCAGCACATAGATAAA+TGG | - | chr6.1:74151962-74151981 | None:intergenic | 35.0% | |
| TAGATCATGTGGCAACAATT+AGG | - | chr6.1:74151657-74151676 | None:intergenic | 35.0% | |
| TAGGAACATGTTTGGATTGA+CGG | + | chr6.1:74151383-74151402 | MS.gene98853:intron | 35.0% | |
| TATAAGTTCATCGTGATTGC+AGG | + | chr6.1:74152501-74152520 | MS.gene98853:intron | 35.0% | |
| TCCATTAAGCGTATCCATTA+AGG | + | chr6.1:74151146-74151165 | MS.gene98853:intron | 35.0% | |
| TTGAACGGAGTTGCAAAAAA+AGG | - | chr6.1:74151108-74151127 | None:intergenic | 35.0% | |
| TTGAAGAAGAAGAAGATGGT+AGG | - | chr6.1:74150359-74150378 | None:intergenic | 35.0% | |
| TTTGAACTTTGACGAAAGCA+CGG | + | chr6.1:74151410-74151429 | MS.gene98853:intron | 35.0% | |
| ! | CGTTTTACTCTGATGAAGAT+TGG | + | chr6.1:74150496-74150515 | MS.gene98853:CDS | 35.0% |
| ! | GGTTTTTCATGCCATAACTA+TGG | + | chr6.1:74151986-74152005 | MS.gene98853:intron | 35.0% |
| !! | TGTTTGTTTCTTTGAAGCCA+AGG | + | chr6.1:74152404-74152423 | MS.gene98853:intron | 35.0% |
| !!! | TCTAGGAGCATCAGATTTTA+AGG | + | chr6.1:74152558-74152577 | MS.gene98853:CDS | 35.0% |
| AAGAAGAAGAAGATGGTAGG+AGG | - | chr6.1:74150356-74150375 | None:intergenic | 40.0% | |
| AGAAGAAGAAGATGGTAGGA+GGG | - | chr6.1:74150355-74150374 | None:intergenic | 40.0% | |
| AGGAACATGTTTGGATTGAC+GGG | + | chr6.1:74151384-74151403 | MS.gene98853:intron | 40.0% | |
| ATGTCCGATTCAGATGTTTC+AGG | - | chr6.1:74152631-74152650 | None:intergenic | 40.0% | |
| GGCGACATAATCACTTATCT+AGG | + | chr6.1:74151364-74151383 | MS.gene98853:intron | 40.0% | |
| GGTATTTCAACCTCGTTTCT+TGG | - | chr6.1:74150477-74150496 | None:intergenic | 40.0% | |
| TAAGGAAACTCCTGCATACA+AGG | + | chr6.1:74152576-74152595 | MS.gene98853:CDS | 40.0% | |
| TAATGGTTGTTGGCCCTTAA+TGG | - | chr6.1:74151163-74151182 | None:intergenic | 40.0% | |
| TCTCTAGACAAGACATTCCT+TGG | - | chr6.1:74152424-74152443 | None:intergenic | 40.0% | |
| TGAGGACCTTCAAAGAAATC+AGG | - | chr6.1:74150558-74150577 | None:intergenic | 40.0% | |
| TGGAATACTGTTGGGTTTGT+TGG | + | chr6.1:74150579-74150598 | MS.gene98853:CDS | 40.0% | |
| TTCTACTTCCTCATCAACAG+TGG | - | chr6.1:74150454-74150473 | None:intergenic | 40.0% | |
| ! | ATTTCTTTGAAGGTCCTCAG+TGG | + | chr6.1:74150559-74150578 | MS.gene98853:CDS | 40.0% |
| ! | CCCTTAATGGATACGCTTAA+TGG | - | chr6.1:74151150-74151169 | None:intergenic | 40.0% |
| !! | ATGAAGATTGGCCTCTTGAA+TGG | + | chr6.1:74150508-74150527 | MS.gene98853:CDS | 40.0% |
| !! | GATTCTTGGTGGTCTTTTTG+CGG | + | chr6.1:74150614-74150633 | MS.gene98853:CDS | 40.0% |
| AAACTAGGAGCTACCTCTGT+AGG | - | chr6.1:74152667-74152686 | None:intergenic | 45.0% | |
| AACCCAACAGTATTCCACTG+AGG | - | chr6.1:74150576-74150595 | None:intergenic | 45.0% | |
| ACCAACAACCACTGTTGATG+AGG | + | chr6.1:74150443-74150462 | MS.gene98853:CDS | 45.0% | |
| ATTCGAGTCCAATCCTACAG+AGG | + | chr6.1:74152651-74152670 | MS.gene98853:CDS | 45.0% | |
| CTCTCACGCTCAACACTATT+GGG | - | chr6.1:74151202-74151221 | None:intergenic | 45.0% | |
| GAATCGAACATGAGACCTTG+AGG | - | chr6.1:74150972-74150991 | None:intergenic | 45.0% | |
| GAATGGTTGTGGATTCTTGG+TGG | + | chr6.1:74150603-74150622 | MS.gene98853:CDS | 45.0% | |
| GACTGAGATTCCTTGTATGC+AGG | - | chr6.1:74152589-74152608 | None:intergenic | 45.0% | |
| GGAACATGTTTGGATTGACG+GGG | + | chr6.1:74151385-74151404 | MS.gene98853:intron | 45.0% | |
| GGAAGTAGAACCAAGAAACG+AGG | + | chr6.1:74150464-74150483 | MS.gene98853:CDS | 45.0% | |
| GGAGAATGGTTGTGGATTCT+TGG | + | chr6.1:74150600-74150619 | MS.gene98853:CDS | 45.0% | |
| GTCCTCAGTGGAATACTGTT+GGG | + | chr6.1:74150571-74150590 | MS.gene98853:CDS | 45.0% | |
| GTCTCATGTTCGATTCTCTC+CGG | + | chr6.1:74150976-74150995 | MS.gene98853:intron | 45.0% | |
| TAGCCCACTCAAATTGACAC+CGG | - | chr6.1:74150998-74151017 | None:intergenic | 45.0% | |
| TCAGGCTCTTTGTAAGTACC+AGG | - | chr6.1:74150540-74150559 | None:intergenic | 45.0% | |
| TCATCGTGATTGCAGGTACT+CGG | + | chr6.1:74152508-74152527 | MS.gene98853:intron | 45.0% | |
| TCCTCATCAACAGTGGTTGT+TGG | - | chr6.1:74150447-74150466 | None:intergenic | 45.0% | |
| TCGCGAAAACACAACCAAGA+TGG | - | chr6.1:74151690-74151709 | None:intergenic | 45.0% | |
| TTTCTTGCCAAAATCGCGCT+GGG | + | chr6.1:74151468-74151487 | MS.gene98853:intron | 45.0% | |
| ! | CAACAGTGGTTGTTGGTTGT+TGG | - | chr6.1:74150440-74150459 | None:intergenic | 45.0% |
| ! | CAATAGTGTTGAGCGTGAGA+GGG | + | chr6.1:74151201-74151220 | MS.gene98853:intron | 45.0% |
| ! | GTTTAAAGCAGCGTTTCACC+AGG | - | chr6.1:74152103-74152122 | None:intergenic | 45.0% |
| ! | TCTCCGGTGTCAATTTGAGT+GGG | + | chr6.1:74150992-74151011 | MS.gene98853:intron | 45.0% |
| !! | CTGTTGGGTTTGTTGGAGAA+TGG | + | chr6.1:74150586-74150605 | MS.gene98853:CDS | 45.0% |
| !! | GGTTTGTTGGAGAATGGTTG+TGG | + | chr6.1:74150592-74150611 | MS.gene98853:CDS | 45.0% |
| !! | TTAACCCATTTAGGTTGGCC+CGG | + | chr6.1:74150913-74150932 | MS.gene98853:intron | 45.0% |
| AATTGGCGGTGAGTCTGACA+TGG | - | chr6.1:74151502-74151521 | None:intergenic | 50.0% | |
| AGGAGCTACCTCTGTAGGAT+TGG | - | chr6.1:74152662-74152681 | None:intergenic | 50.0% | |
| AGGTCCCAAGTCAATACCAC+CGG | - | chr6.1:74150935-74150954 | None:intergenic | 50.0% | |
| CCTCTCACGCTCAACACTAT+TGG | - | chr6.1:74151203-74151222 | None:intergenic | 50.0% | |
| GCATTCACCGTAGCTACATG+CGG | + | chr6.1:74150282-74150301 | MS.gene98853:CDS | 50.0% | |
| GGCTCTTTGTAAGTACCAGG+AGG | - | chr6.1:74150537-74150556 | None:intergenic | 50.0% | |
| GGTCCTCAGTGGAATACTGT+TGG | + | chr6.1:74150570-74150589 | MS.gene98853:CDS | 50.0% | |
| GTTTCTTGCCAAAATCGCGC+TGG | + | chr6.1:74151467-74151486 | MS.gene98853:intron | 50.0% | |
| TATGCGTGAAGGGGCTTACT+GGG | + | chr6.1:74151226-74151245 | MS.gene98853:intron | 50.0% | |
| TCGAACATGAGACCTTGAGG+AGG | - | chr6.1:74150969-74150988 | None:intergenic | 50.0% | |
| ! | AGAAGATGGTAGGAGGGTGT+AGG | - | chr6.1:74150349-74150368 | None:intergenic | 50.0% |
| ! | CAAATGACCCAGCGCGATTT+TGG | - | chr6.1:74151478-74151497 | None:intergenic | 50.0% |
| ! | CCAATAGTGTTGAGCGTGAG+AGG | + | chr6.1:74151200-74151219 | MS.gene98853:intron | 50.0% |
| ! | CTCTCCGGTGTCAATTTGAG+TGG | + | chr6.1:74150991-74151010 | MS.gene98853:intron | 50.0% |
| ! | GAAGATGGTAGGAGGGTGTA+GGG | - | chr6.1:74150348-74150367 | None:intergenic | 50.0% |
| ! | TGAGAGGGTGTATGCGTGAA+GGG | + | chr6.1:74151216-74151235 | MS.gene98853:intron | 50.0% |
| !! | GTGGTATTGACTTGGGACCT+GGG | + | chr6.1:74150935-74150954 | MS.gene98853:intron | 50.0% |
| !! | TTGGGGTGGTCTTGTTGTAG+AGG | - | chr6.1:74150320-74150339 | None:intergenic | 50.0% |
| ACCACCGGGCCAACCTAAAT+GGG | - | chr6.1:74150920-74150939 | None:intergenic | 55.0% | |
| ATGCGTGAAGGGGCTTACTG+GGG | + | chr6.1:74151227-74151246 | MS.gene98853:intron | 55.0% | |
| CCAGGAGGTCTCCATTCAAG+AGG | - | chr6.1:74150522-74150541 | None:intergenic | 55.0% | |
| CCTCTTGAATGGAGACCTCC+TGG | + | chr6.1:74150519-74150538 | MS.gene98853:CDS | 55.0% | |
| GGTCCCAAGTCAATACCACC+GGG | - | chr6.1:74150934-74150953 | None:intergenic | 55.0% | |
| GTATGCGTGAAGGGGCTTAC+TGG | + | chr6.1:74151225-74151244 | MS.gene98853:intron | 55.0% | |
| TACCACCGGGCCAACCTAAA+TGG | - | chr6.1:74150921-74150940 | None:intergenic | 55.0% | |
| TCGTGATTGCAGGTACTCGG+TGG | + | chr6.1:74152511-74152530 | MS.gene98853:intron | 55.0% | |
| TGCACCACCGCATGTAGCTA+CGG | - | chr6.1:74150292-74150311 | None:intergenic | 55.0% | |
| TTCACCGTAGCTACATGCGG+TGG | + | chr6.1:74150285-74150304 | MS.gene98853:CDS | 55.0% | |
| ! | GAGAGGGTGTATGCGTGAAG+GGG | + | chr6.1:74151217-74151236 | MS.gene98853:intron | 55.0% |
| ! | GATTGCAGGTACTCGGTGGT+GGG | + | chr6.1:74152515-74152534 | MS.gene98853:intron | 55.0% |
| ! | GTGAGAGGGTGTATGCGTGA+AGG | + | chr6.1:74151215-74151234 | MS.gene98853:intron | 55.0% |
| ! | TGATTGCAGGTACTCGGTGG+TGG | + | chr6.1:74152514-74152533 | MS.gene98853:intron | 55.0% |
| !! | AGGAGGGTGTAGGGTGTTGT+TGG | - | chr6.1:74150339-74150358 | None:intergenic | 55.0% |
| !! | GAGGGTGTAGGGTGTTGTTG+GGG | - | chr6.1:74150337-74150356 | None:intergenic | 55.0% |
| !! | GGAGGGTGTAGGGTGTTGTT+GGG | - | chr6.1:74150338-74150357 | None:intergenic | 55.0% |
| !! | GGTGGTATTGACTTGGGACC+TGG | + | chr6.1:74150934-74150953 | MS.gene98853:intron | 55.0% |
| !! | TGGCCCGGTGGTATTGACTT+GGG | + | chr6.1:74150928-74150947 | MS.gene98853:intron | 55.0% |
| !! | TTGGCCCGGTGGTATTGACT+TGG | + | chr6.1:74150927-74150946 | MS.gene98853:intron | 55.0% |
| GTAGCTACATGCGGTGGTGC+AGG | + | chr6.1:74150291-74150310 | MS.gene98853:CDS | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | + | chr6.1:74150954-74150973 | MS.gene98853:intron | 60.0% |
| ! | TTGAGGAGGAGCACACTCCC+AGG | - | chr6.1:74150955-74150974 | None:intergenic | 60.0% |
| !! | ACCCATTTAGGTTGGCCCGG+TGG | + | chr6.1:74150916-74150935 | MS.gene98853:intron | 60.0% |
| !! | GGTGTAGGGTGTTGTTGGGG+TGG | - | chr6.1:74150334-74150353 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 74150279 | 74152693 | 74150279 | ID=MS.gene98853 |
| chr6.1 | mRNA | 74150279 | 74152693 | 74150279 | ID=MS.gene98853.t1;Parent=MS.gene98853 |
| chr6.1 | exon | 74150279 | 74150635 | 74150279 | ID=MS.gene98853.t1.exon1;Parent=MS.gene98853.t1 |
| chr6.1 | CDS | 74150279 | 74150635 | 74150279 | ID=cds.MS.gene98853.t1;Parent=MS.gene98853.t1 |
| chr6.1 | exon | 74152523 | 74152693 | 74152523 | ID=MS.gene98853.t1.exon2;Parent=MS.gene98853.t1 |
| chr6.1 | CDS | 74152523 | 74152693 | 74152523 | ID=cds.MS.gene98853.t1;Parent=MS.gene98853.t1 |
| Gene Sequence |
| Protein sequence |
